AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0023090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0023090 MtrunA17_Chr1g0176391 97.131 488 12 2 1 488 1 486 0.0 990
Msa0023090 MtrunA17_Chr7g0268041 60.825 485 161 9 14 488 16 481 0.0 549
Msa0023090 MtrunA17_Chr2g0307041 52.525 99 47 0 68 166 21 119 1.15e-22 99.8
Msa0023090 MtrunA17_Chr1g0184441 46.789 109 56 1 57 163 522 630 1.12e-19 92.8
Msa0023090 MtrunA17_Chr4g0073651 45.283 106 58 0 61 166 4 109 1.87e-17 84.7
Msa0023090 MtrunA17_Chr4g0049631 36.364 121 74 1 42 162 282 399 7.68e-14 73.6
Msa0023090 MtrunA17_Chr5g0434681 46.053 76 41 0 66 141 620 695 1.73e-12 70.1
Msa0023090 MtrunA17_Chr3g0093241 35.099 151 84 3 42 180 310 458 2.19e-12 69.3
Msa0023090 MtrunA17_Chr8g0376151 44.737 76 42 0 66 141 600 675 5.25e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0023090 AT5G06560.1 52.571 525 203 14 1 486 1 518 1.62e-166 480
Msa0023090 AT3G11850.2 44.309 492 228 12 32 486 22 504 1.24e-122 368
Msa0023090 AT3G11850.1 44.309 492 228 12 32 486 22 504 1.24e-122 368
Msa0023090 AT3G54740.3 40.310 516 200 14 1 486 1 438 5.56e-104 318
Msa0023090 AT3G54740.6 40.310 516 200 14 1 486 1 438 5.56e-104 318
Msa0023090 AT3G54740.2 40.310 516 200 14 1 486 1 438 5.56e-104 318
Msa0023090 AT3G54740.5 40.310 516 200 14 1 486 1 438 5.56e-104 318
Msa0023090 AT3G54740.8 40.529 454 170 13 55 486 15 390 1.81e-93 289
Msa0023090 AT3G54740.1 40.529 454 170 13 55 486 15 390 1.81e-93 289
Msa0023090 AT3G54740.7 40.529 454 170 13 55 486 15 390 1.81e-93 289
Msa0023090 AT3G54740.4 40.529 454 170 13 55 486 15 390 1.81e-93 289
Msa0023090 AT2G24140.2 48.913 92 47 0 77 168 30 121 6.27e-20 91.3
Msa0023090 AT2G24140.3 48.913 92 47 0 77 168 30 121 6.27e-20 91.3
Msa0023090 AT4G30830.1 47.826 92 48 0 76 167 28 119 7.60e-20 91.3
Msa0023090 AT4G30830.2 47.826 92 48 0 76 167 28 119 7.60e-20 91.3
Msa0023090 AT1G70750.1 27.143 350 203 10 73 412 423 730 8.54e-19 90.1
Msa0023090 AT5G16720.1 40.833 120 71 0 46 165 340 459 1.42e-18 89.4
Msa0023090 AT5G57830.1 47.321 112 59 0 66 177 19 130 8.26e-18 85.5
Msa0023090 AT2G30690.1 42.308 104 58 1 58 159 606 709 6.81e-17 84.3
Msa0023090 AT2G30690.2 42.308 104 58 1 58 159 606 709 6.81e-17 84.3
Msa0023090 AT1G08800.2 41.121 107 63 0 53 159 880 986 1.36e-15 80.5
Msa0023090 AT1G08800.4 41.121 107 63 0 53 159 880 986 1.36e-15 80.5
Msa0023090 AT1G08800.3 41.121 107 63 0 53 159 880 986 1.36e-15 80.5
Msa0023090 AT1G08800.1 41.121 107 63 0 53 159 880 986 1.36e-15 80.5
Msa0023090 AT1G74830.1 41.739 115 64 1 59 173 301 412 1.27e-14 76.6
Msa0023090 AT2G24140.4 48.571 70 36 0 99 168 1 70 2.59e-13 70.5
Msa0023090 AT2G24140.1 48.571 70 36 0 99 168 1 70 2.59e-13 70.5
Msa0023090 AT4G13630.2 42.453 106 60 1 59 163 217 322 5.28e-12 68.6
Msa0023090 AT4G13630.1 42.453 106 60 1 59 163 217 322 5.28e-12 68.6
Msa0023090 AT1G18990.1 38.621 145 80 3 19 161 262 399 1.01e-11 67.4
Msa0023090 AT1G04890.1 41.346 104 47 1 71 160 105 208 1.20e-11 67.0

Find 153 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATACTTGTTATTGTTCT+TGG 0.136537 1_1:-43836234 None:intergenic
CTCGCGTGGCTTGTCAAATT+TGG 0.173314 1_1:-43836137 None:intergenic
CCCCATATCTTGCTGGAAAA+AGG 0.176118 1_1:+43839810 Msa0023090:three_prime_UTR
ACAATTGACTCTGTTCATTC+TGG 0.200824 1_1:+43836347 Msa0023090:CDS
TCGGTACTTGTCAATCTTTA+AGG 0.257955 1_1:+43836658 Msa0023090:CDS
AAAGCACGATGAGTTTAAAT+TGG 0.258642 1_1:+43835482 Msa0023090:CDS
AATAAATATAAAAGAATAAA+AGG 0.259114 1_1:-43840132 None:intergenic
AAACACAGGATGATGAGTTT+TGG 0.300857 1_1:+43835843 Msa0023090:CDS
GCACCGGATAATGGCTTTAC+AGG 0.308345 1_1:+43836371 Msa0023090:CDS
TCAGGAGGAACTTATGTCTT+TGG 0.312375 1_1:+43835758 Msa0023090:CDS
TATGCAGCAGAGAACGATTC+AGG 0.315470 1_1:+43835581 Msa0023090:CDS
TGGGCTACCAACTGACAGTA+TGG 0.319781 1_1:+43839627 Msa0023090:CDS
TTATACTTGTTATTGTTCTT+GGG 0.322493 1_1:-43836233 None:intergenic
TGATGATTCCCTGATTCCTT+TGG 0.328208 1_1:-43836431 None:intergenic
CAGCCGGCGGCGAAGGTCGC+CGG 0.330373 1_1:-43834916 None:intergenic
GGAAAACGGGAATCAATTTC+CGG 0.335275 1_1:-43834890 None:intergenic
TTCAAATTTGAATTGTCCTC+TGG 0.337959 1_1:-43836275 None:intergenic
AATAAGAAACTTCTAAGAAT+TGG 0.340626 1_1:-43834803 None:intergenic
GTCGCTTACATGCGAAGTTC+AGG 0.354088 1_1:+43835815 Msa0023090:CDS
CATTCTGGGGCACCGGATAA+TGG 0.354097 1_1:+43836362 Msa0023090:CDS
TTTCAACAAATTGACAAATC+AGG 0.355867 1_1:-43835287 None:intergenic
AACTGCTGTAGGTATATGTT+TGG 0.356349 1_1:+43839607 Msa0023090:intron
TTATCCTCCCCATATCTTGC+TGG 0.357554 1_1:+43839803 Msa0023090:three_prime_UTR
GGTGGGATGTGTAAAGAAAT+AGG 0.364734 1_1:+43836188 Msa0023090:CDS
AAATGTAATATCATGTATAA+TGG 0.365105 1_1:+43835933 Msa0023090:CDS
GAAGCTTTACATGAGGCTTC+AGG 0.375689 1_1:+43836484 Msa0023090:CDS
GCAACCAGTCCAAAGGAATC+AGG 0.378139 1_1:+43836422 Msa0023090:CDS
AAGCTCCTCAAACGGTCATT+AGG 0.378165 1_1:-43836011 None:intergenic
AAGGTGGGTGGCGTGAAGGT+AGG 0.381615 1_1:+43835199 Msa0023090:five_prime_UTR
CTCCGACGGCGTCTCCTTCA+AGG 0.382855 1_1:+43834948 Msa0023090:five_prime_UTR
TTAAGGTCACTTACTTGCTT+TGG 0.384628 1_1:-43837214 None:intergenic
GACAAGTACCGAGATCTTGC+AGG 0.390060 1_1:-43836647 None:intergenic
ATCATCGAAACCTCCAGCTT+TGG 0.392724 1_1:-43836396 None:intergenic
TCCTCTGACTCAGCAACATT+CGG 0.393176 1_1:+43836167 Msa0023090:CDS
GTTTGAGGAGCTTGGAGAAT+AGG 0.397127 1_1:+43836021 Msa0023090:CDS
TTCAGGCACTTGAGGCTGAT+AGG 0.398288 1_1:+43836501 Msa0023090:CDS
CATGTAAAGCTTCTTAATGT+AGG 0.398593 1_1:-43836474 None:intergenic
TCTCTCATATGGTTGGTTGT+TGG 0.400526 1_1:+43839930 Msa0023090:three_prime_UTR
GAAGGAGCGGGAATGGTGTT+TGG 0.403473 1_1:-43834720 None:intergenic
GGCTTTACAGGTTCCAAAGC+TGG 0.408092 1_1:+43836383 Msa0023090:CDS
CAATTGACTCTGTTCATTCT+GGG 0.412467 1_1:+43836348 Msa0023090:CDS
AGGTGGGTGGCGTGAAGGTA+GGG 0.418557 1_1:+43835200 Msa0023090:five_prime_UTR
TGGAAAATTACTGACCTTGA+AGG 0.421083 1_1:-43834962 None:intergenic
TGAAATTGAAAGTAATTTGT+TGG 0.422705 1_1:+43839867 Msa0023090:three_prime_UTR
ACCTGTGTCGTCGGTTGCGC+GGG 0.423829 1_1:+43835515 Msa0023090:CDS
GGAGAATAGGATTTCTCAAA+TGG 0.426445 1_1:+43836034 Msa0023090:CDS
GATATGAGCATTCTCTCATA+TGG 0.430882 1_1:+43839919 Msa0023090:three_prime_UTR
TAATGACCGTTTGAGGAGCT+TGG 0.436236 1_1:+43836013 Msa0023090:CDS
GGTGGGTGGCGTGAAGGTAG+GGG 0.440122 1_1:+43835201 Msa0023090:five_prime_UTR
GTACTTGAAATACATCTTTG+TGG 0.443980 1_1:-43839688 None:intergenic
GGATTTGAATGAGGAGTTGG+AGG 0.445102 1_1:+43835602 Msa0023090:CDS
ATTCCCTGATTCCTTTGGAC+TGG 0.453675 1_1:-43836426 None:intergenic
CTCTGTTCATTCTGGGGCAC+CGG 0.453986 1_1:+43836355 Msa0023090:CDS
GGAGAAAATGACGCATGATC+AGG 0.455281 1_1:+43835740 Msa0023090:CDS
AGGTCGCCGGAGCGGAAAAC+GGG 0.458609 1_1:-43834903 None:intergenic
GGAAGGGAATTGTCGATGGT+TGG 0.458645 1_1:+43835222 Msa0023090:five_prime_UTR
AAGGTCGCCGGAGCGGAAAA+CGG 0.461243 1_1:-43834904 None:intergenic
TTGTTGAAATGTTGTGATTG+TGG 0.462676 1_1:+43835402 Msa0023090:CDS
TCAGGATTTGAATGAGGAGT+TGG 0.463110 1_1:+43835599 Msa0023090:CDS
TTTGAGGTTGCAGAGGGAAA+AGG 0.465476 1_1:+43835674 Msa0023090:CDS
TTTGAATGAGGAGTTGGAGG+AGG 0.470668 1_1:+43835605 Msa0023090:CDS
TCAACGGCAGCCGGCGGCGA+AGG 0.470704 1_1:-43834923 None:intergenic
GATATTGAGAAATATGCATT+TGG 0.470801 1_1:+43835981 Msa0023090:CDS
TTGTGGATGTAGTTGTTCCT+TGG 0.472863 1_1:+43835419 Msa0023090:CDS
ATGGTGTTTGGTGGGAACAA+TGG 0.477536 1_1:-43834708 None:intergenic
GTTACGGAGAAAGTAATTGT+TGG 0.483998 1_1:+43836107 Msa0023090:CDS
TTTAAAGGAGGGTATTCGTA+TGG 0.487165 1_1:-43835912 None:intergenic
GGAAAAGGCGGAAGTTCAAA+TGG 0.490761 1_1:+43835689 Msa0023090:CDS
TGGATGTAGTTGTTCCTTGG+TGG 0.490768 1_1:+43835422 Msa0023090:CDS
GAACCTGTAAAGCCATTATC+CGG 0.491366 1_1:-43836374 None:intergenic
GGACAATTCAAATTTGAAGA+AGG 0.492097 1_1:+43836280 Msa0023090:CDS
ACAATACCCTTGGTAGAGTC+AGG 0.500186 1_1:-43840021 None:intergenic
ACCATCCACCTGGCTGTAAG+TGG 0.503511 1_1:-43836066 None:intergenic
TCAGGCACTTGAGGCTGATA+GGG 0.504864 1_1:+43836502 Msa0023090:CDS
TTGTTCTTGGGAGACTCTGT+AGG 0.505523 1_1:-43836221 None:intergenic
CATGAGGCTTCAGGCACTTG+AGG 0.506019 1_1:+43836493 Msa0023090:CDS
TCACTTCTGCACTGAAGTTG+TGG 0.511391 1_1:-43840094 None:intergenic
GTCGGAGAATCAACGGCAGC+CGG 0.516611 1_1:-43834932 None:intergenic
GGTAGAGTCAGGTTGAGAAT+AGG 0.518331 1_1:-43840010 None:intergenic
ACTGCTGTAGGTATATGTTT+GGG 0.519653 1_1:+43839608 Msa0023090:intron
GGAGCGGGAATGGTGTTTGG+TGG 0.520071 1_1:-43834717 None:intergenic
AGTTGTGGAAGTTAAAGTTA+TGG 0.527722 1_1:-43840079 None:intergenic
CATTGCTTCATTCGCAGCTG+TGG 0.529998 1_1:-43835643 None:intergenic
TGTTCTTGGGAGACTCTGTA+GGG 0.530579 1_1:-43836220 None:intergenic
TACCTGTGTCGTCGGTTGCG+CGG 0.530945 1_1:+43835514 Msa0023090:CDS
TTTGATTTGCTGGAGAAGGT+GGG 0.531139 1_1:+43835184 Msa0023090:five_prime_UTR
GAACAATAACAAGTATAAGA+AGG 0.531882 1_1:+43836238 Msa0023090:CDS
ATGTAAAGCTTCTTAATGTA+GGG 0.531958 1_1:-43836473 None:intergenic
AAGAATGAATGAATGAATGA+AGG 0.532019 1_1:-43834738 None:intergenic
ATCACCTTCGACCTCATCCT+CGG 0.533257 1_1:-43835871 None:intergenic
AACGATTCAGGATTTGAATG+AGG 0.533822 1_1:+43835593 Msa0023090:CDS
AAACTCCTAATGACCGTTTG+AGG 0.535504 1_1:+43836006 Msa0023090:CDS
GCTCCGGCGACCTTCGCCGC+CGG 0.536269 1_1:+43834913 Msa0023090:five_prime_UTR
TTCAACAAATCCCTCGGAGA+TGG 0.542740 1_1:-43835387 None:intergenic
GAGCGGGAATGGTGTTTGGT+GGG 0.542857 1_1:-43834716 None:intergenic
GAATGAATGAATGAAGGAGC+GGG 0.543363 1_1:-43834732 None:intergenic
TGAGCATTCTCTCATATGGT+TGG 0.544257 1_1:+43839923 Msa0023090:three_prime_UTR
TTGTTGAAAATTGAAGCAAT+TGG 0.546431 1_1:+43835301 Msa0023090:five_prime_UTR
CAACCAGTCCAAAGGAATCA+GGG 0.548648 1_1:+43836423 Msa0023090:CDS
AAAGGAGGGTATTCGTATGG+AGG 0.549905 1_1:-43835909 None:intergenic
TGATAGGGAATCAATGAGGC+AGG 0.551938 1_1:+43836517 Msa0023090:CDS
CGAGCAAGCCTGCAAGATCT+CGG 0.551994 1_1:+43836639 Msa0023090:CDS
AATGAATGAAGGAGCGGGAA+TGG 0.556590 1_1:-43834727 None:intergenic
GGTGGCGTGAAGGTAGGGGA+AGG 0.558365 1_1:+43835205 Msa0023090:five_prime_UTR
GGGAGACTCTGTAGGGAACT+CGG 0.562340 1_1:-43836213 None:intergenic
TATTCTCCAAGCTCCTCAAA+CGG 0.563369 1_1:-43836019 None:intergenic
TAGGGGAAGGGAATTGTCGA+TGG 0.564241 1_1:+43835218 Msa0023090:five_prime_UTR
TAGTGTTACTAAAATTCAGT+TGG 0.568936 1_1:-43839752 None:intergenic
ACATAAAGCTACAATACCCT+TGG 0.570807 1_1:-43840031 None:intergenic
GTGGCGTGAAGGTAGGGGAA+GGG 0.574344 1_1:+43835206 Msa0023090:five_prime_UTR
GGCTGCCGTTGATTCTCCGA+CGG 0.574424 1_1:+43834934 Msa0023090:five_prime_UTR
GGAGAAGGTGGGTGGCGTGA+AGG 0.579153 1_1:+43835195 Msa0023090:five_prime_UTR
ACCGAATGTTGCTGAGTCAG+AGG 0.581426 1_1:-43836168 None:intergenic
GGGCTACCAACTGACAGTAT+GGG 0.583233 1_1:+43839628 Msa0023090:CDS
CCCACTTACAGCCAGGTGGA+TGG 0.583532 1_1:+43836065 Msa0023090:CDS
TCTGACTCAGCAACATTCGG+TGG 0.584263 1_1:+43836170 Msa0023090:CDS
ATGTGTGGTGTTACGTGAGA+TGG 0.587868 1_1:+43835554 Msa0023090:CDS
CAATAAAATCACCATCCACC+TGG 0.588402 1_1:-43836076 None:intergenic
GAAAACTCCCACTTACAGCC+AGG 0.590810 1_1:+43836058 Msa0023090:CDS
GGCGGCGAAGGTCGCCGGAG+CGG 0.593170 1_1:-43834911 None:intergenic
ATGTATTTCAAGTACACAAG+TGG 0.599685 1_1:+43839696 Msa0023090:CDS
AAGGTAGATAATGCTTCAGA+AGG 0.602096 1_1:+43836299 Msa0023090:CDS
AGACGCCGTCGGAGAATCAA+CGG 0.604160 1_1:-43834939 None:intergenic
AGCACAGGTTGTGTTACTGA+AGG 0.606214 1_1:+43836565 Msa0023090:CDS
AGCAAGCCCATACTGTCAGT+TGG 0.606366 1_1:-43839634 None:intergenic
AATGAGCACAGATAAAGCAC+AGG 0.607100 1_1:+43836550 Msa0023090:CDS
CAACATTTCAACAAATCCCT+CGG 0.610770 1_1:-43835393 None:intergenic
GGAGAATCAACGGCAGCCGG+CGG 0.612383 1_1:-43834929 None:intergenic
TTTACAGGTTCCAAAGCTGG+AGG 0.613417 1_1:+43836386 Msa0023090:CDS
AATTGACTCTGTTCATTCTG+GGG 0.616386 1_1:+43836349 Msa0023090:CDS
CTGACTCAGCAACATTCGGT+GGG 0.617640 1_1:+43836171 Msa0023090:CDS
TAATATCATGTATAATGGCA+TGG 0.619732 1_1:+43835938 Msa0023090:CDS
ACATTAAGAAGCTTTACATG+AGG 0.620076 1_1:+43836477 Msa0023090:CDS
TGATTATGCAACCAGTCCAA+AGG 0.622802 1_1:+43836415 Msa0023090:CDS
TTCAGAACATTGTTCCACCA+AGG 0.625495 1_1:-43835436 None:intergenic
TTCTCAACCTGACTCTACCA+AGG 0.626816 1_1:+43840014 Msa0023090:three_prime_UTR
ACCCGCGCAACCGACGACAC+AGG 0.633336 1_1:-43835516 None:intergenic
GAAAATGACGCATGATCAGG+AGG 0.634038 1_1:+43835743 Msa0023090:CDS
TAGTGAGTTACCTGTGTCGT+CGG 0.637113 1_1:+43835506 Msa0023090:CDS
CCATCCACCTGGCTGTAAGT+GGG 0.639457 1_1:-43836065 None:intergenic
TTGACAAAAGAACAAATGCA+AGG 0.639746 1_1:+43839665 Msa0023090:CDS
TGTATTTCAAGTACACAAGT+GGG 0.647014 1_1:+43839697 Msa0023090:CDS
TCTCAACCTGACTCTACCAA+GGG 0.647531 1_1:+43840015 Msa0023090:three_prime_UTR
TGAATGAATGAATGAAGGAG+CGG 0.648063 1_1:-43834733 None:intergenic
GAGGTTGCAGAGGGAAAAGG+CGG 0.649166 1_1:+43835677 Msa0023090:CDS
TGATATTATGAATGAATGTG+TGG 0.649814 1_1:+43835539 Msa0023090:CDS
GACCTTGAAGGAGACGCCGT+CGG 0.651976 1_1:-43834950 None:intergenic
GATTTGCTGGAGAAGGTGGG+TGG 0.656050 1_1:+43835187 Msa0023090:five_prime_UTR
GGATTATTTCTCTCAACCAG+AGG 0.660219 1_1:+43836259 Msa0023090:CDS
AAGTTCAGGCTTATAAACAC+AGG 0.668096 1_1:+43835829 Msa0023090:CDS
TACACCGAGGATGAGGTCGA+AGG 0.669244 1_1:+43835867 Msa0023090:CDS
AACTCCCACTTACAGCCAGG+TGG 0.685414 1_1:+43836061 Msa0023090:CDS
AGGCTGATAGGGAATCAATG+AGG 0.730909 1_1:+43836513 Msa0023090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTACCAAATAAAAAAAA+AGG - chr1_1:43834848-43834867 None:intergenic 10.0%
!!! AAAAAATCGATTTTTATTAT+TGG + chr1_1:43835053-43835072 Msa0023090:intron 10.0%
!!! AAAAATCGATTTTTATTATT+GGG + chr1_1:43835054-43835073 Msa0023090:intron 10.0%
!!! TTGTTAATTTTTTTGTTATT+TGG + chr1_1:43835109-43835128 Msa0023090:intron 10.0%
!!! ATTTAGTTTTTTTTTTTGGT+AGG - chr1_1:43834563-43834582 None:intergenic 15.0%
!!! TGTGATTTAGTTTTTTTTTT+TGG - chr1_1:43834567-43834586 None:intergenic 15.0%
!! AAAAAAAAGGAAAAAGATAA+AGG - chr1_1:43834835-43834854 None:intergenic 15.0%
!!! CTTTTTCCTTTTTTTTTATT+TGG + chr1_1:43834839-43834858 Msa0023090:five_prime_UTR 15.0%
!!! AAAATCGATTTTTATTATTG+GGG + chr1_1:43835055-43835074 Msa0023090:intron 15.0%
!!! TGTTTTTTGTTATTGTTTTT+AGG + chr1_1:43835143-43835162 Msa0023090:intron 15.0%
!!! TACATGATATTACATTTTAA+AGG - chr1_1:43835930-43835949 None:intergenic 15.0%
!! AAATGTAATATCATGTATAA+TGG + chr1_1:43835933-43835952 Msa0023090:CDS 15.0%
!!! TTTTATTGGAAAAAATGTTA+CGG + chr1_1:43836091-43836110 Msa0023090:CDS 15.0%
!!! AAATGTATTTTTTTTCATCA+GGG - chr1_1:43837095-43837114 None:intergenic 15.0%
!! ATGAAAAAAAATACATTTCA+TGG + chr1_1:43837097-43837116 Msa0023090:intron 15.0%
!!! TATAAGTTATTTCAAAGATA+AGG + chr1_1:43837527-43837546 Msa0023090:intron 15.0%
!! AATTGTTGGTATAAAAAATA+AGG + chr1_1:43837676-43837695 Msa0023090:intron 15.0%
!!! ATTTTATAGGGTATTTTATA+GGG - chr1_1:43838307-43838326 None:intergenic 15.0%
!!! AATTTTATAGGGTATTTTAT+AGG - chr1_1:43838308-43838327 None:intergenic 15.0%
!! TATATATAAATTTGTGAAAC+TGG - chr1_1:43838483-43838502 None:intergenic 15.0%
!!! TATGTAGATTATAGAATTTT+GGG - chr1_1:43838574-43838593 None:intergenic 15.0%
!!! TTATGTAGATTATAGAATTT+TGG - chr1_1:43838575-43838594 None:intergenic 15.0%
!!! AATAAGAAACTTCTAAGAAT+TGG - chr1_1:43834806-43834825 None:intergenic 20.0%
!!! TGATATTACATTTTAAAGGA+GGG - chr1_1:43835926-43835945 None:intergenic 20.0%
!!! ATGATATTACATTTTAAAGG+AGG - chr1_1:43835927-43835946 None:intergenic 20.0%
!!! TTATACTTGTTATTGTTCTT+GGG - chr1_1:43836236-43836255 None:intergenic 20.0%
!!! GAAATGTATTTTTTTTCATC+AGG - chr1_1:43837096-43837115 None:intergenic 20.0%
!! AAAAAAAATACATTTCATGG+TGG + chr1_1:43837100-43837119 Msa0023090:intron 20.0%
!! TTGAAATAACTTATAAGCAT+AGG - chr1_1:43837522-43837541 None:intergenic 20.0%
!!! TACTGTACTTTTTGTTTTTT+TGG + chr1_1:43838135-43838154 Msa0023090:intron 20.0%
!!! ACTTTGGCAATAATTTTATA+GGG - chr1_1:43838319-43838338 None:intergenic 20.0%
!!! AACTTTGGCAATAATTTTAT+AGG - chr1_1:43838320-43838339 None:intergenic 20.0%
!! TGCATATAAATTGACATAAT+TGG + chr1_1:43838525-43838544 Msa0023090:intron 20.0%
!! GCATATAAATTGACATAATT+GGG + chr1_1:43838526-43838545 Msa0023090:intron 20.0%
!! ATCTACATAAACTCAAATTT+AGG + chr1_1:43838585-43838604 Msa0023090:intron 20.0%
!!! ATGATTACATTTTGATGTTT+TGG - chr1_1:43838684-43838703 None:intergenic 20.0%
!!! ACTTCGGTAATAATTTTATA+GGG - chr1_1:43839249-43839268 None:intergenic 20.0%
!!! AACTTCGGTAATAATTTTAT+AGG - chr1_1:43839250-43839269 None:intergenic 20.0%
!!! TCTATTGATTGAAATTCAAA+TGG + chr1_1:43839359-43839378 Msa0023090:intron 20.0%
!! TCTAATCTATAGTTAGAAAT+TGG - chr1_1:43839441-43839460 None:intergenic 20.0%
!!! TGAAATTGAAAGTAATTTGT+TGG + chr1_1:43839867-43839886 Msa0023090:three_prime_UTR 20.0%
! AAGAATGAATGAATGAATGA+AGG - chr1_1:43834741-43834760 None:intergenic 25.0%
!! TCATTTTCTGAACTTTTTAC+CGG + chr1_1:43834871-43834890 Msa0023090:five_prime_UTR 25.0%
!! GTTGAAATTTTCGTCAAATT+TGG + chr1_1:43835000-43835019 Msa0023090:intron 25.0%
!! GGTGAAATTAGGTTAATTTT+AGG + chr1_1:43835021-43835040 Msa0023090:intron 25.0%
!! GATTTTTATTATTGGGGTTT+AGG + chr1_1:43835061-43835080 Msa0023090:intron 25.0%
! TTTCAACAAATTGACAAATC+AGG - chr1_1:43835290-43835309 None:intergenic 25.0%
! TTGTTGAAAATTGAAGCAAT+TGG + chr1_1:43835301-43835320 Msa0023090:five_prime_UTR 25.0%
!! AAGCAATTGGTTGTAATTTT+TGG + chr1_1:43835314-43835333 Msa0023090:five_prime_UTR 25.0%
! TGATATTATGAATGAATGTG+TGG + chr1_1:43835539-43835558 Msa0023090:CDS 25.0%
! TAATATCATGTATAATGGCA+TGG + chr1_1:43835938-43835957 Msa0023090:CDS 25.0%
! GATATTGAGAAATATGCATT+TGG + chr1_1:43835981-43836000 Msa0023090:CDS 25.0%
!!! CTTATACTTGTTATTGTTCT+TGG - chr1_1:43836237-43836256 None:intergenic 25.0%
! GAACAATAACAAGTATAAGA+AGG + chr1_1:43836238-43836257 Msa0023090:CDS 25.0%
! ATGTAAAGCTTCTTAATGTA+GGG - chr1_1:43836476-43836495 None:intergenic 25.0%
! TTAAGGCATGTTTGAAAAAT+TGG - chr1_1:43836815-43836834 None:intergenic 25.0%
!!! TTTTTCAAACATGCCTTAAT+TGG + chr1_1:43836816-43836835 Msa0023090:intron 25.0%
!! CAAAATTTAGCTTCCAATTA+AGG - chr1_1:43836832-43836851 None:intergenic 25.0%
!!! TTTTTTTTTTTTGCGTTCAG+TGG + chr1_1:43837156-43837175 Msa0023090:intron 25.0%
!! CAATCAGTGTTGTTAAATAT+CGG - chr1_1:43837389-43837408 None:intergenic 25.0%
! AACTTTCAAAGATAAAGACA+TGG - chr1_1:43837586-43837605 None:intergenic 25.0%
! GGAAACTAATGTATATAGAA+GGG - chr1_1:43837744-43837763 None:intergenic 25.0%
! AGGAAACTAATGTATATAGA+AGG - chr1_1:43837745-43837764 None:intergenic 25.0%
! GGAAACTAATGTATATAGAA+GGG - chr1_1:43837744-43837763 None:intergenic 25.0%
! AGGAAACTAATGTATATAGA+AGG - chr1_1:43837745-43837764 None:intergenic 25.0%
!!! TTGTTTTTTTGGAACTTCTT+TGG + chr1_1:43838146-43838165 Msa0023090:intron 25.0%
! AATTAATAACAACATCACAG+TGG - chr1_1:43838243-43838262 None:intergenic 25.0%
!! TTGTTATTAATTATGCTTCC+TGG + chr1_1:43838251-43838270 Msa0023090:intron 25.0%
! TATAAATTTGTGAAACTGGT+AGG - chr1_1:43838479-43838498 None:intergenic 25.0%
!!! ATGTTTTGGATTTTCTTATG+GGG - chr1_1:43838670-43838689 None:intergenic 25.0%
!!! GATGTTTTGGATTTTCTTAT+GGG - chr1_1:43838671-43838690 None:intergenic 25.0%
!!! TGATGTTTTGGATTTTCTTA+TGG - chr1_1:43838672-43838691 None:intergenic 25.0%
! AGTTCATACACATAGAAAAT+TGG + chr1_1:43838820-43838839 Msa0023090:intron 25.0%
! ACAGTTATCCACTAATATAT+AGG + chr1_1:43838843-43838862 Msa0023090:intron 25.0%
! CAACTAATCCTATATATTAG+TGG - chr1_1:43838854-43838873 None:intergenic 25.0%
!!! AGGTGTTTAAAGTGTTATTT+TGG + chr1_1:43838907-43838926 Msa0023090:intron 25.0%
!!! GGTGTTTAAAGTGTTATTTT+GGG + chr1_1:43838908-43838927 Msa0023090:intron 25.0%
!! ATTTTATAGGGTAGTTTCAT+AGG - chr1_1:43839237-43839256 None:intergenic 25.0%
!!! TATGCTATCATGTTTTTTAG+AGG + chr1_1:43839292-43839311 Msa0023090:intron 25.0%
!! AATTCGCAGTTTTCAAATTT+CGG + chr1_1:43839725-43839744 Msa0023090:exon 25.0%
!! TAGTGTTACTAAAATTCAGT+TGG - chr1_1:43839755-43839774 None:intergenic 25.0%
GGAACAATGGAAAAAATTGA+AGG - chr1_1:43834698-43834717 None:intergenic 30.0%
! AACGTGAATTTCACACTTTT+CGG + chr1_1:43834773-43834792 Msa0023090:five_prime_UTR 30.0%
! AGGTCAGTAATTTTCCATTT+CGG + chr1_1:43834968-43834987 Msa0023090:intron 30.0%
! TCGTCAAATTTGGTGAAATT+AGG + chr1_1:43835010-43835029 Msa0023090:intron 30.0%
!!! TGTGTGATTTTTTGATTTGC+TGG + chr1_1:43835174-43835193 Msa0023090:five_prime_UTR 30.0%
!!! ATTTTTTGATTTGCTGGAGA+AGG + chr1_1:43835180-43835199 Msa0023090:five_prime_UTR 30.0%
!! GGTTGTAATTTTTGGATTGT+TGG + chr1_1:43835322-43835341 Msa0023090:five_prime_UTR 30.0%
!! GTAATTTTTGGATTGTTGGA+AGG + chr1_1:43835326-43835345 Msa0023090:five_prime_UTR 30.0%
TTGTTGAAATGTTGTGATTG+TGG + chr1_1:43835402-43835421 Msa0023090:CDS 30.0%
!! TGGAACAATGTTCTGAAAAA+TGG + chr1_1:43835442-43835461 Msa0023090:CDS 30.0%
AAAGCACGATGAGTTTAAAT+TGG + chr1_1:43835482-43835501 Msa0023090:CDS 30.0%
TTCAAATTTGAATTGTCCTC+TGG - chr1_1:43836278-43836297 None:intergenic 30.0%
GGACAATTCAAATTTGAAGA+AGG + chr1_1:43836280-43836299 Msa0023090:CDS 30.0%
CATGTAAAGCTTCTTAATGT+AGG - chr1_1:43836477-43836496 None:intergenic 30.0%
ACATTAAGAAGCTTTACATG+AGG + chr1_1:43836477-43836496 Msa0023090:CDS 30.0%
AAAAGCAAACAATGACGAAA+TGG - chr1_1:43836735-43836754 None:intergenic 30.0%
CTAGATAACGTTTACATACA+GGG - chr1_1:43836952-43836971 None:intergenic 30.0%
!!! ATCAGAGTATTTTTTGTGAG+GGG - chr1_1:43837011-43837030 None:intergenic 30.0%
!!! GATCAGAGTATTTTTTGTGA+GGG - chr1_1:43837012-43837031 None:intergenic 30.0%
!!! AGATCAGAGTATTTTTTGTG+AGG - chr1_1:43837013-43837032 None:intergenic 30.0%
GTTTCTCCAAAAAACAATTG+AGG - chr1_1:43837186-43837205 None:intergenic 30.0%
ATTGTTACATGTGTTATCGA+TGG + chr1_1:43837287-43837306 Msa0023090:intron 30.0%
ATCTCAATAAAAGGACTTCT+GGG - chr1_1:43837475-43837494 None:intergenic 30.0%
AGAACTACCATCTCAATAAA+AGG - chr1_1:43837484-43837503 None:intergenic 30.0%
! GTAGTTCTTTTGAATTCAAG+TGG + chr1_1:43837496-43837515 Msa0023090:intron 30.0%
TATGAAGTTTCAATGACAAC+TGG - chr1_1:43837611-43837630 None:intergenic 30.0%
GGAAAACACTTCTAAATTGT+TGG + chr1_1:43837662-43837681 Msa0023090:intron 30.0%
ATTCTCCTCAGTATCAATTT+CGG + chr1_1:43837997-43838016 Msa0023090:intron 30.0%
!! CTTTGGTAGTTTTTGAAAGT+TGG + chr1_1:43838163-43838182 Msa0023090:intron 30.0%
TTGATGGAACTGTATCAATA+TGG - chr1_1:43838194-43838213 None:intergenic 30.0%
! TTTTATAGGGTAGTTTCACA+AGG - chr1_1:43838294-43838313 None:intergenic 30.0%
AATCATAATCACAAGTCACT+CGG + chr1_1:43838698-43838717 Msa0023090:intron 30.0%
!!! GTTCATTAAAGGCATCTTTT+GGG - chr1_1:43838942-43838961 None:intergenic 30.0%
AAAAGATGCCTTTAATGAAC+CGG + chr1_1:43838942-43838961 Msa0023090:intron 30.0%
! TTTCTCAGATATGTTTTCGT+GGG - chr1_1:43838981-43839000 None:intergenic 30.0%
AATCTGCCAATTCTGTTATT+GGG - chr1_1:43839004-43839023 None:intergenic 30.0%
GTATAAATCGTATGATCGTA+TGG - chr1_1:43839133-43839152 None:intergenic 30.0%
GATCATACGATTTATACCAT+GGG + chr1_1:43839136-43839155 Msa0023090:intron 30.0%
CTATTTAAGTATTATGCCCA+TGG - chr1_1:43839155-43839174 None:intergenic 30.0%
! AAACCAGGAAGCATAATTAA+CGG - chr1_1:43839198-43839217 None:intergenic 30.0%
!!! CATCTGTTTTGTTTTAAACC+AGG - chr1_1:43839213-43839232 None:intergenic 30.0%
! TTTTCAAAAATAGTGAGGGT+TGG - chr1_1:43839386-43839405 None:intergenic 30.0%
! CCGATTTTCAAAAATAGTGA+GGG - chr1_1:43839390-43839409 None:intergenic 30.0%
!!! CCCTCACTATTTTTGAAAAT+CGG + chr1_1:43839387-43839406 Msa0023090:intron 30.0%
!! ACCGATTTTCAAAAATAGTG+AGG - chr1_1:43839391-43839410 None:intergenic 30.0%
TAAGATATCATGCTTTGCAT+AGG + chr1_1:43839479-43839498 Msa0023090:intron 30.0%
! TTGCATTTGTTCTTTTGTCA+AGG - chr1_1:43839666-43839685 None:intergenic 30.0%
TTGACAAAAGAACAAATGCA+AGG + chr1_1:43839665-43839684 Msa0023090:CDS 30.0%
GTACTTGAAATACATCTTTG+TGG - chr1_1:43839691-43839710 None:intergenic 30.0%
! ATGTATTTCAAGTACACAAG+TGG + chr1_1:43839696-43839715 Msa0023090:CDS 30.0%
! TGTATTTCAAGTACACAAGT+GGG + chr1_1:43839697-43839716 Msa0023090:CDS 30.0%
! TTTTGTACATAACGTATTGC+TGG + chr1_1:43839962-43839981 Msa0023090:three_prime_UTR 30.0%
AGTTGTGGAAGTTAAAGTTA+TGG - chr1_1:43840082-43840101 None:intergenic 30.0%
TGAATGAATGAATGAAGGAG+CGG - chr1_1:43834736-43834755 None:intergenic 35.0%
! ACGTGAATTTCACACTTTTC+GGG + chr1_1:43834774-43834793 Msa0023090:five_prime_UTR 35.0%
TGGAAAATTACTGACCTTGA+AGG - chr1_1:43834965-43834984 None:intergenic 35.0%
TCAACGAACAAAAACCGAAA+TGG - chr1_1:43834985-43835004 None:intergenic 35.0%
!!! GGTTTAGGTTTTATTGTAGC+TGG + chr1_1:43835076-43835095 Msa0023090:intron 35.0%
!!! ATTGTTGGAAGGTTTTGAGT+GGG + chr1_1:43835337-43835356 Msa0023090:five_prime_UTR 35.0%
!! TTTGAGTGGGTTTTGATCAA+TGG + chr1_1:43835350-43835369 Msa0023090:exon 35.0%
!! TGGGTTTTGATCAATGGATT+CGG + chr1_1:43835356-43835375 Msa0023090:exon 35.0%
CAACATTTCAACAAATCCCT+CGG - chr1_1:43835396-43835415 None:intergenic 35.0%
AACGATTCAGGATTTGAATG+AGG + chr1_1:43835593-43835612 Msa0023090:CDS 35.0%
! AAGCAATGTCGATGATTTTG+AGG + chr1_1:43835658-43835677 Msa0023090:CDS 35.0%
AAGTTCAGGCTTATAAACAC+AGG + chr1_1:43835829-43835848 Msa0023090:CDS 35.0%
! AAACACAGGATGATGAGTTT+TGG + chr1_1:43835843-43835862 Msa0023090:CDS 35.0%
! AACACAGGATGATGAGTTTT+GGG + chr1_1:43835844-43835863 Msa0023090:CDS 35.0%
!! TTTAAAGGAGGGTATTCGTA+TGG - chr1_1:43835915-43835934 None:intergenic 35.0%
GGAGAATAGGATTTCTCAAA+TGG + chr1_1:43836034-43836053 Msa0023090:CDS 35.0%
GTTACGGAGAAAGTAATTGT+TGG + chr1_1:43836107-43836126 Msa0023090:CDS 35.0%
AAGGTAGATAATGCTTCAGA+AGG + chr1_1:43836299-43836318 Msa0023090:CDS 35.0%
! ACAATTGACTCTGTTCATTC+TGG + chr1_1:43836347-43836366 Msa0023090:CDS 35.0%
! CAATTGACTCTGTTCATTCT+GGG + chr1_1:43836348-43836367 Msa0023090:CDS 35.0%
! AATTGACTCTGTTCATTCTG+GGG + chr1_1:43836349-43836368 Msa0023090:CDS 35.0%
!! CTCGTACTCATTTTTCTTTG+CGG - chr1_1:43836623-43836642 None:intergenic 35.0%
TCGGTACTTGTCAATCTTTA+AGG + chr1_1:43836658-43836677 Msa0023090:CDS 35.0%
CCTAGATAACGTTTACATAC+AGG - chr1_1:43836953-43836972 None:intergenic 35.0%
CCTGTATGTAAACGTTATCT+AGG + chr1_1:43836950-43836969 Msa0023090:intron 35.0%
!!! TCAGAGTATTTTTTGTGAGG+GGG - chr1_1:43837010-43837029 None:intergenic 35.0%
!!! TTTCATGGTGGATTTTGCAA+TGG + chr1_1:43837112-43837131 Msa0023090:intron 35.0%
!!! GGATCACCTCAATTGTTTTT+TGG + chr1_1:43837177-43837196 Msa0023090:CDS 35.0%
TTAAGGTCACTTACTTGCTT+TGG - chr1_1:43837217-43837236 None:intergenic 35.0%
AGAAGTCAGGAAAGATGTTA+AGG - chr1_1:43837234-43837253 None:intergenic 35.0%
!! TATGTATGTTCTGAGAAGTC+AGG - chr1_1:43837247-43837266 None:intergenic 35.0%
CTGATTGTTACTAACTGTGT+AGG + chr1_1:43837402-43837421 Msa0023090:intron 35.0%
CATCTCAATAAAAGGACTTC+TGG - chr1_1:43837476-43837495 None:intergenic 35.0%
! CAGAAGTCCTTTTATTGAGA+TGG + chr1_1:43837474-43837493 Msa0023090:intron 35.0%
! AACTTCATAGCATCTAGCTT+TGG + chr1_1:43837622-43837641 Msa0023090:intron 35.0%
!!! TTTGGTTTTCAAAGTGCGTA+TGG + chr1_1:43837640-43837659 Msa0023090:intron 35.0%
!! TTGGTTTTCAAAGTGCGTAT+GGG + chr1_1:43837641-43837660 Msa0023090:intron 35.0%
ATGTTAGTACAGTGCATGTT+GGG - chr1_1:43837704-43837723 None:intergenic 35.0%
AATGTTAGTACAGTGCATGT+TGG - chr1_1:43837705-43837724 None:intergenic 35.0%
ATTCTCCTCAGTACCAATTT+CGG + chr1_1:43837842-43837861 Msa0023090:intron 35.0%
TAGTTTCCTCTTTCTAACAC+CGG + chr1_1:43838051-43838070 Msa0023090:intron 35.0%
ACTAACACACTAAATGTTGC+CGG - chr1_1:43838073-43838092 None:intergenic 35.0%
ACATTTAGTGTGTTAGTCAC+CGG + chr1_1:43838076-43838095 Msa0023090:intron 35.0%
ACTAACAGACTTAATGTTGC+CGG - chr1_1:43838098-43838117 None:intergenic 35.0%
!!! AGTGGAATTGCTATTTTCGA+AGG - chr1_1:43838225-43838244 None:intergenic 35.0%
!!! GCAACTGTTTTGTTTTAACC+AGG - chr1_1:43838272-43838291 None:intergenic 35.0%
GACATCATCAAACTGAACTT+TGG - chr1_1:43838335-43838354 None:intergenic 35.0%
! GCTATCATGTTTTGTAGACT+AGG + chr1_1:43838365-43838384 Msa0023090:intron 35.0%
AGGATCTCAACTAACTACTT+TGG - chr1_1:43838393-43838412 None:intergenic 35.0%
ATCATAATCACAAGTCACTC+GGG + chr1_1:43838699-43838718 Msa0023090:intron 35.0%
!!! TTTTTCACCCTGCTTTGTTT+TGG - chr1_1:43838773-43838792 None:intergenic 35.0%
AAAACAAAGCAGGGTGAAAA+AGG + chr1_1:43838772-43838791 Msa0023090:intron 35.0%
AAACAAAGCAGGGTGAAAAA+GGG + chr1_1:43838773-43838792 Msa0023090:intron 35.0%
AGTAGAAAACTACGTTAGAG+AGG + chr1_1:43838796-43838815 Msa0023090:intron 35.0%
GTAGAAAACTACGTTAGAGA+GGG + chr1_1:43838797-43838816 Msa0023090:intron 35.0%
!!! GGTTCATTAAAGGCATCTTT+TGG - chr1_1:43838943-43838962 None:intergenic 35.0%
AAAGATGCCTTTAATGAACC+GGG + chr1_1:43838943-43838962 Msa0023090:intron 35.0%
! GTTTCTCAGATATGTTTTCG+TGG - chr1_1:43838982-43839001 None:intergenic 35.0%
GAGAAACCCAATAACAGAAT+TGG + chr1_1:43838995-43839014 Msa0023090:intron 35.0%
CAATCTGCCAATTCTGTTAT+TGG - chr1_1:43839005-43839024 None:intergenic 35.0%
CAATAACAGAATTGGCAGAT+TGG + chr1_1:43839003-43839022 Msa0023090:intron 35.0%
!! CGTATGATCGTATGGTTTTA+CGG - chr1_1:43839125-43839144 None:intergenic 35.0%
CGATCATACGATTTATACCA+TGG + chr1_1:43839135-43839154 Msa0023090:intron 35.0%
AACTGCTGTAGGTATATGTT+TGG + chr1_1:43839607-43839626 Msa0023090:intron 35.0%
ACTGCTGTAGGTATATGTTT+GGG + chr1_1:43839608-43839627 Msa0023090:intron 35.0%
GATATGAGCATTCTCTCATA+TGG + chr1_1:43839919-43839938 Msa0023090:three_prime_UTR 35.0%
ACATAAAGCTACAATACCCT+TGG - chr1_1:43840034-43840053 None:intergenic 35.0%
GAATGAATGAATGAAGGAGC+GGG - chr1_1:43834735-43834754 None:intergenic 40.0%
GGAAAACGGGAATCAATTTC+CGG - chr1_1:43834893-43834912 None:intergenic 40.0%
!!! TTTTGATTTGCTGGAGAAGG+TGG + chr1_1:43835183-43835202 Msa0023090:five_prime_UTR 40.0%
!! TTTGATTTGCTGGAGAAGGT+GGG + chr1_1:43835184-43835203 Msa0023090:five_prime_UTR 40.0%
!!! GATTGTTGGAAGGTTTTGAG+TGG + chr1_1:43835336-43835355 Msa0023090:five_prime_UTR 40.0%
TTGTGGATGTAGTTGTTCCT+TGG + chr1_1:43835419-43835438 Msa0023090:CDS 40.0%
TTCAGAACATTGTTCCACCA+AGG - chr1_1:43835439-43835458 None:intergenic 40.0%
TCAGGATTTGAATGAGGAGT+TGG + chr1_1:43835599-43835618 Msa0023090:CDS 40.0%
!!! GATGATTTTGAGGTTGCAGA+GGG + chr1_1:43835668-43835687 Msa0023090:CDS 40.0%
! TCAGTTTAAGCGTTTTGCAG+AGG + chr1_1:43835719-43835738 Msa0023090:CDS 40.0%
TCAGGAGGAACTTATGTCTT+TGG + chr1_1:43835758-43835777 Msa0023090:CDS 40.0%
AAACTCCTAATGACCGTTTG+AGG + chr1_1:43836006-43836025 Msa0023090:CDS 40.0%
TATTCTCCAAGCTCCTCAAA+CGG - chr1_1:43836022-43836041 None:intergenic 40.0%
CAATAAAATCACCATCCACC+TGG - chr1_1:43836079-43836098 None:intergenic 40.0%
! CAGGTGGATGGTGATTTTAT+TGG + chr1_1:43836077-43836096 Msa0023090:CDS 40.0%
GGTGGGATGTGTAAAGAAAT+AGG + chr1_1:43836188-43836207 Msa0023090:CDS 40.0%
! GGATTATTTCTCTCAACCAG+AGG + chr1_1:43836259-43836278 Msa0023090:CDS 40.0%
GAACCTGTAAAGCCATTATC+CGG - chr1_1:43836377-43836396 None:intergenic 40.0%
TGATTATGCAACCAGTCCAA+AGG + chr1_1:43836415-43836434 Msa0023090:CDS 40.0%
TGATGATTCCCTGATTCCTT+TGG - chr1_1:43836434-43836453 None:intergenic 40.0%
AATGAGCACAGATAAAGCAC+AGG + chr1_1:43836550-43836569 Msa0023090:CDS 40.0%
!! AGGGAAACTGAAGCTTTAGA+GGG - chr1_1:43836933-43836952 None:intergenic 40.0%
!!! CAGAGTATTTTTTGTGAGGG+GGG - chr1_1:43837009-43837028 None:intergenic 40.0%
GTTACATGTGTTATCGATGG+CGG + chr1_1:43837290-43837309 Msa0023090:intron 40.0%
TTTATGGCGGCTTAAAATGG+CGG - chr1_1:43837328-43837347 None:intergenic 40.0%
! CGTTTTATGGCGGCTTAAAA+TGG - chr1_1:43837331-43837350 None:intergenic 40.0%
! GTGTTGTTAAATATCGGCCA+TGG - chr1_1:43837383-43837402 None:intergenic 40.0%
AGTTTCCTCTTTAACCCACA+TGG + chr1_1:43837757-43837776 Msa0023090:intron 40.0%
GTTTCCTCTTTAACCCACAT+GGG + chr1_1:43837758-43837777 Msa0023090:intron 40.0%
AGTTTCCTCTTTAACCCACT+TGG + chr1_1:43837912-43837931 Msa0023090:intron 40.0%
GTTTCCTCTTTAACCCACTT+GGG + chr1_1:43837913-43837932 Msa0023090:intron 40.0%
GAATCAAACCTAAGACCTTG+AGG - chr1_1:43837981-43838000 None:intergenic 40.0%
TCCTCAGTATCAATTTCGGT+TGG + chr1_1:43838001-43838020 Msa0023090:intron 40.0%
! TTCGAAGGCATATGCTTTGA+TGG - chr1_1:43838210-43838229 None:intergenic 40.0%
TAGTTAGTTGAGATCCTGCA+CGG + chr1_1:43838396-43838415 Msa0023090:intron 40.0%
! TGATTTGGGAGATTGTAGCA+CGG + chr1_1:43838443-43838462 Msa0023090:intron 40.0%
GGGAGTTCTTTAGTTGTTTG+AGG - chr1_1:43838650-43838669 None:intergenic 40.0%
TCTTGCATCCAAAACAAAGC+AGG + chr1_1:43838762-43838781 Msa0023090:intron 40.0%
CTTGCATCCAAAACAAAGCA+GGG + chr1_1:43838763-43838782 Msa0023090:intron 40.0%
TGTTGTAGTCACAGCTAATG+AGG + chr1_1:43838887-43838906 Msa0023090:intron 40.0%
! CAGATATGTTTTCGTGGGTA+AGG - chr1_1:43838976-43838995 None:intergenic 40.0%
! ATTAACGGACAACTTCACAG+TGG - chr1_1:43839183-43839202 None:intergenic 40.0%
TGTCCGTTAATTATGCTTCC+TGG + chr1_1:43839192-43839211 Msa0023090:intron 40.0%
GACGTCATCAAACTGAACTT+CGG - chr1_1:43839265-43839284 None:intergenic 40.0%
CATGTACCGCATGATTTAGT+GGG - chr1_1:43839414-43839433 None:intergenic 40.0%
TCATGTACCGCATGATTTAG+TGG - chr1_1:43839415-43839434 None:intergenic 40.0%
GTTGCAAGCATTTCAGATGA+TGG - chr1_1:43839590-43839609 None:intergenic 40.0%
! CCTTTTTCCAGCAAGATATG+GGG - chr1_1:43839813-43839832 None:intergenic 40.0%
! CCCTTTTTCCAGCAAGATAT+GGG - chr1_1:43839814-43839833 None:intergenic 40.0%
CCCATATCTTGCTGGAAAAA+GGG + chr1_1:43839811-43839830 Msa0023090:three_prime_UTR 40.0%
CCATATCTTGCTGGAAAAAG+GGG + chr1_1:43839812-43839831 Msa0023090:three_prime_UTR 40.0%
TGAGCATTCTCTCATATGGT+TGG + chr1_1:43839923-43839942 Msa0023090:three_prime_UTR 40.0%
! TCTCTCATATGGTTGGTTGT+TGG + chr1_1:43839930-43839949 Msa0023090:three_prime_UTR 40.0%
! ATGGTGTTTGGTGGGAACAA+TGG - chr1_1:43834711-43834730 None:intergenic 45.0%
AATGAATGAAGGAGCGGGAA+TGG - chr1_1:43834730-43834749 None:intergenic 45.0%
GGAAAAAGTTCCATCTCCGA+GGG + chr1_1:43835377-43835396 Msa0023090:CDS 45.0%
TTCAACAAATCCCTCGGAGA+TGG - chr1_1:43835390-43835409 None:intergenic 45.0%
TGGATGTAGTTGTTCCTTGG+TGG + chr1_1:43835422-43835441 Msa0023090:CDS 45.0%
TAGTGAGTTACCTGTGTCGT+CGG + chr1_1:43835506-43835525 Msa0023090:CDS 45.0%
!! ATGTGTGGTGTTACGTGAGA+TGG + chr1_1:43835554-43835573 Msa0023090:CDS 45.0%
TATGCAGCAGAGAACGATTC+AGG + chr1_1:43835581-43835600 Msa0023090:CDS 45.0%
GGATTTGAATGAGGAGTTGG+AGG + chr1_1:43835602-43835621 Msa0023090:CDS 45.0%
TTTGAATGAGGAGTTGGAGG+AGG + chr1_1:43835605-43835624 Msa0023090:CDS 45.0%
!!! CGATGATTTTGAGGTTGCAG+AGG + chr1_1:43835667-43835686 Msa0023090:CDS 45.0%
! TTTGAGGTTGCAGAGGGAAA+AGG + chr1_1:43835674-43835693 Msa0023090:CDS 45.0%
GGAAAAGGCGGAAGTTCAAA+TGG + chr1_1:43835689-43835708 Msa0023090:CDS 45.0%
GGAGAAAATGACGCATGATC+AGG + chr1_1:43835740-43835759 Msa0023090:CDS 45.0%
GAAAATGACGCATGATCAGG+AGG + chr1_1:43835743-43835762 Msa0023090:CDS 45.0%
!! AAAGGAGGGTATTCGTATGG+AGG - chr1_1:43835912-43835931 None:intergenic 45.0%
AAGCTCCTCAAACGGTCATT+AGG - chr1_1:43836014-43836033 None:intergenic 45.0%
TAATGACCGTTTGAGGAGCT+TGG + chr1_1:43836013-43836032 Msa0023090:CDS 45.0%
GTTTGAGGAGCTTGGAGAAT+AGG + chr1_1:43836021-43836040 Msa0023090:CDS 45.0%
! CAGAGGAAAATTTTCTCGCG+TGG - chr1_1:43836154-43836173 None:intergenic 45.0%
TCCTCTGACTCAGCAACATT+CGG + chr1_1:43836167-43836186 Msa0023090:CDS 45.0%
TGTTCTTGGGAGACTCTGTA+GGG - chr1_1:43836223-43836242 None:intergenic 45.0%
TTGTTCTTGGGAGACTCTGT+AGG - chr1_1:43836224-43836243 None:intergenic 45.0%
TTTACAGGTTCCAAAGCTGG+AGG + chr1_1:43836386-43836405 Msa0023090:CDS 45.0%
ATCATCGAAACCTCCAGCTT+TGG - chr1_1:43836399-43836418 None:intergenic 45.0%
CAACCAGTCCAAAGGAATCA+GGG + chr1_1:43836423-43836442 Msa0023090:CDS 45.0%
ATTCCCTGATTCCTTTGGAC+TGG - chr1_1:43836429-43836448 None:intergenic 45.0%
GAAGCTTTACATGAGGCTTC+AGG + chr1_1:43836484-43836503 Msa0023090:CDS 45.0%
AGGCTGATAGGGAATCAATG+AGG + chr1_1:43836513-43836532 Msa0023090:CDS 45.0%
TGATAGGGAATCAATGAGGC+AGG + chr1_1:43836517-43836536 Msa0023090:CDS 45.0%
! AGCACAGGTTGTGTTACTGA+AGG + chr1_1:43836565-43836584 Msa0023090:CDS 45.0%
!! TGAAGCTTTAGAGGGAGCAA+GGG - chr1_1:43836925-43836944 None:intergenic 45.0%
! CAGGGAAACTGAAGCTTTAG+AGG - chr1_1:43836934-43836953 None:intergenic 45.0%
!!! GTATTTTTTGTGAGGGGGGA+AGG - chr1_1:43837005-43837024 None:intergenic 45.0%
CACTGCCATCCTTTACAAAC+TGG + chr1_1:43837357-43837376 Msa0023090:intron 45.0%
CATGGCCAGTTTGTAAAGGA+TGG - chr1_1:43837365-43837384 None:intergenic 45.0%
CATCCTTTACAAACTGGCCA+TGG + chr1_1:43837363-43837382 Msa0023090:intron 45.0%
TCCTCAGTACCAATTTCGGT+GGG + chr1_1:43837846-43837865 Msa0023090:intron 45.0%
TGTTAGTAGCCCACCGAAAT+TGG - chr1_1:43837858-43837877 None:intergenic 45.0%
TCAAACCTAAGACCTTGAGG+AGG - chr1_1:43837978-43837997 None:intergenic 45.0%
GCCAACCGAAATTGATACTG+AGG - chr1_1:43838005-43838024 None:intergenic 45.0%
! ATGTTGCCGGTGTTAGAAAG+AGG - chr1_1:43838060-43838079 None:intergenic 45.0%
TCTGTGACCCGGTTCATTAA+AGG - chr1_1:43838953-43838972 None:intergenic 45.0%
!! TATGGCATTGGCTGGAATTG+GGG - chr1_1:43839076-43839095 None:intergenic 45.0%
!! GTATGGCATTGGCTGGAATT+GGG - chr1_1:43839077-43839096 None:intergenic 45.0%
!! TGTATGGCATTGGCTGGAAT+TGG - chr1_1:43839078-43839097 None:intergenic 45.0%
ATCGGTCCCACTAAATCATG+CGG + chr1_1:43839405-43839424 Msa0023090:intron 45.0%
GAAATGCTTGCAACTGCTGT+AGG + chr1_1:43839596-43839615 Msa0023090:intron 45.0%
TTATCCTCCCCATATCTTGC+TGG + chr1_1:43839803-43839822 Msa0023090:three_prime_UTR 45.0%
! TTTTCCAGCAAGATATGGGG+AGG - chr1_1:43839810-43839829 None:intergenic 45.0%
CCCCATATCTTGCTGGAAAA+AGG + chr1_1:43839810-43839829 Msa0023090:three_prime_UTR 45.0%
! CCCCTTTTTCCAGCAAGATA+TGG - chr1_1:43839815-43839834 None:intergenic 45.0%
!! GGTAGAGTCAGGTTGAGAAT+AGG - chr1_1:43840013-43840032 None:intergenic 45.0%
TTCTCAACCTGACTCTACCA+AGG + chr1_1:43840014-43840033 Msa0023090:three_prime_UTR 45.0%
TCTCAACCTGACTCTACCAA+GGG + chr1_1:43840015-43840034 Msa0023090:three_prime_UTR 45.0%
ACAATACCCTTGGTAGAGTC+AGG - chr1_1:43840024-43840043 None:intergenic 45.0%
TCACTTCTGCACTGAAGTTG+TGG - chr1_1:43840097-43840116 None:intergenic 45.0%
!!! TTTTTAATTTTTTTTTTCTT+GGG - chr1_1:43834616-43834635 None:intergenic 5.0%
!!! ATTTTTAATTTTTTTTTTCT+TGG - chr1_1:43834617-43834636 None:intergenic 5.0%
!! AATAAATATAAAAGAATAAA+AGG - chr1_1:43840135-43840154 None:intergenic 5.0%
! TTGATTCCCGTTTTCCGCTC+CGG + chr1_1:43834897-43834916 Msa0023090:five_prime_UTR 50.0%
TAGGGGAAGGGAATTGTCGA+TGG + chr1_1:43835218-43835237 Msa0023090:five_prime_UTR 50.0%
GGAAGGGAATTGTCGATGGT+TGG + chr1_1:43835222-43835241 Msa0023090:five_prime_UTR 50.0%
CGGAAAAAGTTCCATCTCCG+AGG + chr1_1:43835376-43835395 Msa0023090:CDS 50.0%
CATTGCTTCATTCGCAGCTG+TGG - chr1_1:43835646-43835665 None:intergenic 50.0%
GTCGCTTACATGCGAAGTTC+AGG + chr1_1:43835815-43835834 Msa0023090:CDS 50.0%
!!! GATGAGTTTTGGGTACACCG+AGG + chr1_1:43835854-43835873 Msa0023090:CDS 50.0%
!! TTTTGGGTACACCGAGGATG+AGG + chr1_1:43835860-43835879 Msa0023090:CDS 50.0%
ATCACCTTCGACCTCATCCT+CGG - chr1_1:43835874-43835893 None:intergenic 50.0%
GAAAACTCCCACTTACAGCC+AGG + chr1_1:43836058-43836077 Msa0023090:CDS 50.0%
! CTCGCGTGGCTTGTCAAATT+TGG - chr1_1:43836140-43836159 None:intergenic 50.0%
ACCGAATGTTGCTGAGTCAG+AGG - chr1_1:43836171-43836190 None:intergenic 50.0%
TCTGACTCAGCAACATTCGG+TGG + chr1_1:43836170-43836189 Msa0023090:CDS 50.0%
CTGACTCAGCAACATTCGGT+GGG + chr1_1:43836171-43836190 Msa0023090:CDS 50.0%
! GCACCGGATAATGGCTTTAC+AGG + chr1_1:43836371-43836390 Msa0023090:CDS 50.0%
GGCTTTACAGGTTCCAAAGC+TGG + chr1_1:43836383-43836402 Msa0023090:CDS 50.0%
GCAACCAGTCCAAAGGAATC+AGG + chr1_1:43836422-43836441 Msa0023090:CDS 50.0%
TTCAGGCACTTGAGGCTGAT+AGG + chr1_1:43836501-43836520 Msa0023090:CDS 50.0%
TCAGGCACTTGAGGCTGATA+GGG + chr1_1:43836502-43836521 Msa0023090:CDS 50.0%
!! GACAAGTACCGAGATCTTGC+AGG - chr1_1:43836650-43836669 None:intergenic 50.0%
!! CTGAAGCTTTAGAGGGAGCA+AGG - chr1_1:43836926-43836945 None:intergenic 50.0%
! TTTTTGTGAGGGGGGAAGGT+CGG - chr1_1:43837001-43837020 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGATC+TGG + chr1_1:43837040-43837059 Msa0023090:intron 50.0%
TAAGCCGCCATAAAACGCCA+TGG + chr1_1:43837334-43837353 Msa0023090:intron 50.0%
! AGTGCCATGGCGTTTTATGG+CGG - chr1_1:43837341-43837360 None:intergenic 50.0%
TGTAAAGGATGGCAGTGCCA+TGG - chr1_1:43837354-43837373 None:intergenic 50.0%
! CCAACCCATGTGGGTTAAAG+AGG - chr1_1:43837765-43837784 None:intergenic 50.0%
CCTCTTTAACCCACATGGGT+TGG + chr1_1:43837762-43837781 Msa0023090:intron 50.0%
! TTGAGGAGGAGCACACTACA+AGG - chr1_1:43837809-43837828 None:intergenic 50.0%
TTGTAGTGTGCTCCTCCTCA+AGG + chr1_1:43837808-43837827 Msa0023090:intron 50.0%
GAATCGAACCCAAGACCTTG+AGG - chr1_1:43837826-43837845 None:intergenic 50.0%
CTCCTCAGTACCAATTTCGG+TGG + chr1_1:43837845-43837864 Msa0023090:intron 50.0%
!! CCAACCCAAGTGGGTTAAAG+AGG - chr1_1:43837920-43837939 None:intergenic 50.0%
CCTCTTTAACCCACTTGGGT+TGG + chr1_1:43837917-43837936 Msa0023090:intron 50.0%
!! TTAACCCACTTGGGTTGGTC+CGG + chr1_1:43837922-43837941 Msa0023090:intron 50.0%
! TTGAGGAGGAGCACACTACA+AGG - chr1_1:43837809-43837828 None:intergenic 50.0%
TTGTAGTGTGCTCCTCCTCA+AGG + chr1_1:43837808-43837827 Msa0023090:intron 50.0%
TGAGATCCTGCACGGTATTG+AGG + chr1_1:43838404-43838423 Msa0023090:intron 50.0%
! ATCCTGCACGGTATTGAGGA+GGG + chr1_1:43838408-43838427 Msa0023090:intron 50.0%
GGGTCACAAGGTCGTGATTT+GGG + chr1_1:43838429-43838448 Msa0023090:intron 50.0%
ACCGCTCCCATGATTTATCG+CGG + chr1_1:43839035-43839054 Msa0023090:intron 50.0%
GGATCCCCGCGATAAATCAT+GGG - chr1_1:43839044-43839063 None:intergenic 50.0%
!! ATGGCATTGGCTGGAATTGG+GGG - chr1_1:43839075-43839094 None:intergenic 50.0%
!! TGTTCGTGTATGGCATTGGC+TGG - chr1_1:43839084-43839103 None:intergenic 50.0%
GGTGTGTTCGTGTATGGCAT+TGG - chr1_1:43839088-43839107 None:intergenic 50.0%
TGCCATACACGAACACACCA+AGG + chr1_1:43839089-43839108 Msa0023090:intron 50.0%
GCCATACACGAACACACCAA+GGG + chr1_1:43839090-43839109 Msa0023090:intron 50.0%
CCATACACGAACACACCAAG+GGG + chr1_1:43839091-43839110 Msa0023090:intron 50.0%
TGGGCTACCAACTGACAGTA+TGG + chr1_1:43839627-43839646 Msa0023090:CDS 50.0%
GGGCTACCAACTGACAGTAT+GGG + chr1_1:43839628-43839647 Msa0023090:CDS 50.0%
AGCAAGCCCATACTGTCAGT+TGG - chr1_1:43839637-43839656 None:intergenic 50.0%
GAGCGGGAATGGTGTTTGGT+GGG - chr1_1:43834719-43834738 None:intergenic 55.0%
GAAGGAGCGGGAATGGTGTT+TGG - chr1_1:43834723-43834742 None:intergenic 55.0%
AGACGCCGTCGGAGAATCAA+CGG - chr1_1:43834942-43834961 None:intergenic 55.0%
!! GATTTGCTGGAGAAGGTGGG+TGG + chr1_1:43835187-43835206 Msa0023090:five_prime_UTR 55.0%
GAGGTTGCAGAGGGAAAAGG+CGG + chr1_1:43835677-43835696 Msa0023090:CDS 55.0%
TACACCGAGGATGAGGTCGA+AGG + chr1_1:43835867-43835886 Msa0023090:CDS 55.0%
AACTCCCACTTACAGCCAGG+TGG + chr1_1:43836061-43836080 Msa0023090:CDS 55.0%
CCATCCACCTGGCTGTAAGT+GGG - chr1_1:43836068-43836087 None:intergenic 55.0%
ACCATCCACCTGGCTGTAAG+TGG - chr1_1:43836069-43836088 None:intergenic 55.0%
GGGAGACTCTGTAGGGAACT+CGG - chr1_1:43836216-43836235 None:intergenic 55.0%
!! CTCTGTTCATTCTGGGGCAC+CGG + chr1_1:43836355-43836374 Msa0023090:CDS 55.0%
!! CATTCTGGGGCACCGGATAA+TGG + chr1_1:43836362-43836381 Msa0023090:CDS 55.0%
CATGAGGCTTCAGGCACTTG+AGG + chr1_1:43836493-43836512 Msa0023090:CDS 55.0%
CGAGCAAGCCTGCAAGATCT+CGG + chr1_1:43836639-43836658 Msa0023090:CDS 55.0%
GGGGGAAGGTCGGTATACAA+AGG - chr1_1:43836991-43837010 None:intergenic 55.0%
! GGCAGTGCCATGGCGTTTTA+TGG - chr1_1:43837344-43837363 None:intergenic 55.0%
CGGCCATGGCCAGTTTGTAA+AGG - chr1_1:43837369-43837388 None:intergenic 55.0%
!! TTAACCCACATGGGTTGGCC+CGG + chr1_1:43837767-43837786 Msa0023090:intron 55.0%
TGTGCTCCTCCTCAAGGTCT+TGG + chr1_1:43837814-43837833 Msa0023090:intron 55.0%
GTGCTCCTCCTCAAGGTCTT+GGG + chr1_1:43837815-43837834 Msa0023090:intron 55.0%
TCGAACCCAAGACCTTGAGG+AGG - chr1_1:43837823-43837842 None:intergenic 55.0%
GCCCACCGAAATTGGTACTG+AGG - chr1_1:43837850-43837869 None:intergenic 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG + chr1_1:43837815-43837834 Msa0023090:intron 55.0%
! GATCCTGCACGGTATTGAGG+AGG + chr1_1:43838407-43838426 Msa0023090:intron 55.0%
! TCCTGCACGGTATTGAGGAG+GGG + chr1_1:43838409-43838428 Msa0023090:intron 55.0%
! GGTATTGAGGAGGGGTCACA+AGG + chr1_1:43838417-43838436 Msa0023090:intron 55.0%
GGGGTCACAAGGTCGTGATT+TGG + chr1_1:43838428-43838447 Msa0023090:intron 55.0%
GCGATAAATCATGGGAGCGG+TGG - chr1_1:43839036-43839055 None:intergenic 55.0%
CCCGCGATAAATCATGGGAG+CGG - chr1_1:43839039-43839058 None:intergenic 55.0%
CCGCTCCCATGATTTATCGC+GGG + chr1_1:43839036-43839055 Msa0023090:intron 55.0%
CGCTCCCATGATTTATCGCG+GGG + chr1_1:43839037-43839056 Msa0023090:intron 55.0%
GGGATCCCCGCGATAAATCA+TGG - chr1_1:43839045-43839064 None:intergenic 55.0%
! CCCCTTGGTGTGTTCGTGTA+TGG - chr1_1:43839094-43839113 None:intergenic 55.0%
TACACGAACACACCAAGGGG+TGG + chr1_1:43839094-43839113 Msa0023090:intron 55.0%
TTTACGGTCTTGCCACCCCT+TGG - chr1_1:43839109-43839128 None:intergenic 55.0%
GGAGCGGGAATGGTGTTTGG+TGG - chr1_1:43834720-43834739 None:intergenic 60.0%
AAGGTCGCCGGAGCGGAAAA+CGG - chr1_1:43834907-43834926 None:intergenic 60.0%
GTCGGAGAATCAACGGCAGC+CGG - chr1_1:43834935-43834954 None:intergenic 60.0%
!! GGCTGCCGTTGATTCTCCGA+CGG + chr1_1:43834934-43834953 Msa0023090:five_prime_UTR 60.0%
GACCTTGAAGGAGACGCCGT+CGG - chr1_1:43834953-43834972 None:intergenic 60.0%
AAGGTGGGTGGCGTGAAGGT+AGG + chr1_1:43835199-43835218 Msa0023090:five_prime_UTR 60.0%
AGGTGGGTGGCGTGAAGGTA+GGG + chr1_1:43835200-43835219 Msa0023090:five_prime_UTR 60.0%
GTGGCGTGAAGGTAGGGGAA+GGG + chr1_1:43835206-43835225 Msa0023090:five_prime_UTR 60.0%
! TACCTGTGTCGTCGGTTGCG+CGG + chr1_1:43835514-43835533 Msa0023090:CDS 60.0%
CCCACTTACAGCCAGGTGGA+TGG + chr1_1:43836065-43836084 Msa0023090:CDS 60.0%
AGGACCCAAGCCAACACCTC+CGG - chr1_1:43837789-43837808 None:intergenic 60.0%
ACCTCCGGACCAACCCAAGT+GGG - chr1_1:43837929-43837948 None:intergenic 60.0%
!! TTGGGTTGGTCCGGAGGTGT+TGG + chr1_1:43837931-43837950 Msa0023090:intron 60.0%
!! TTGGTCCGGAGGTGTTGGCT+TGG + chr1_1:43837936-43837955 Msa0023090:intron 60.0%
!! TGGTCCGGAGGTGTTGGCTT+GGG + chr1_1:43837937-43837956 Msa0023090:intron 60.0%
AGGACCCAAGCCAACACCTC+CGG - chr1_1:43837789-43837808 None:intergenic 60.0%
ACCCCTCCTCAATACCGTGC+AGG - chr1_1:43838413-43838432 None:intergenic 60.0%
CGTGGGTAAGGTCTGTGACC+CGG - chr1_1:43838964-43838983 None:intergenic 60.0%
! CTGGAATTGGGGGTGCAGCT+GGG - chr1_1:43839065-43839084 None:intergenic 60.0%
AGGTCGCCGGAGCGGAAAAC+GGG - chr1_1:43834906-43834925 None:intergenic 65.0%
GGAGAATCAACGGCAGCCGG+CGG - chr1_1:43834932-43834951 None:intergenic 65.0%
CTCCGACGGCGTCTCCTTCA+AGG + chr1_1:43834948-43834967 Msa0023090:five_prime_UTR 65.0%
GGAGAAGGTGGGTGGCGTGA+AGG + chr1_1:43835195-43835214 Msa0023090:five_prime_UTR 65.0%
GGTGGGTGGCGTGAAGGTAG+GGG + chr1_1:43835201-43835220 Msa0023090:five_prime_UTR 65.0%
GGTGGCGTGAAGGTAGGGGA+AGG + chr1_1:43835205-43835224 Msa0023090:five_prime_UTR 65.0%
! ACCTGTGTCGTCGGTTGCGC+GGG + chr1_1:43835515-43835534 Msa0023090:CDS 65.0%
ACCTCCGGGCCAACCCATGT+GGG - chr1_1:43837774-43837793 None:intergenic 65.0%
!! ATGGGTTGGCCCGGAGGTGT+TGG + chr1_1:43837776-43837795 Msa0023090:intron 65.0%
!! TTGGCCCGGAGGTGTTGGCT+TGG + chr1_1:43837781-43837800 Msa0023090:intron 65.0%
!! TGGCCCGGAGGTGTTGGCTT+GGG + chr1_1:43837782-43837801 Msa0023090:intron 65.0%
GGACCCAAGCCAACACCTCC+GGG - chr1_1:43837788-43837807 None:intergenic 65.0%
!! ACCCACTTGGGTTGGTCCGG+AGG + chr1_1:43837925-43837944 Msa0023090:intron 65.0%
CACCTCCGGACCAACCCAAG+TGG - chr1_1:43837930-43837949 None:intergenic 65.0%
! GCTGGAATTGGGGGTGCAGC+TGG - chr1_1:43839066-43839085 None:intergenic 65.0%
ACCCGCGCAACCGACGACAC+AGG - chr1_1:43835519-43835538 None:intergenic 70.0%
!! ACCCACATGGGTTGGCCCGG+AGG + chr1_1:43837770-43837789 Msa0023090:intron 70.0%
CACCTCCGGGCCAACCCATG+TGG - chr1_1:43837775-43837794 None:intergenic 70.0%
TCAACGGCAGCCGGCGGCGA+AGG - chr1_1:43834926-43834945 None:intergenic 75.0%
! GGCGGCGAAGGTCGCCGGAG+CGG - chr1_1:43834914-43834933 None:intergenic 80.0%
! GCTCCGGCGACCTTCGCCGC+CGG + chr1_1:43834913-43834932 Msa0023090:five_prime_UTR 80.0%
! CAGCCGGCGGCGAAGGTCGC+CGG - chr1_1:43834919-43834938 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 43834543 43840174 43834543 ID=Msa0023090;Name=Msa0023090
chr1_1 mRNA 43834543 43840174 43834543 ID=Msa0023090-mRNA-1;Parent=Msa0023090;Name=Msa0023090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=631|1|1|1|0|0|4|448|488
chr1_1 exon 43834543 43834969 43834543 ID=Msa0023090-mRNA-1:exon:12655;Parent=Msa0023090-mRNA-1
chr1_1 exon 43835165 43836679 43835165 ID=Msa0023090-mRNA-1:exon:12656;Parent=Msa0023090-mRNA-1
chr1_1 exon 43837176 43837222 43837176 ID=Msa0023090-mRNA-1:exon:12657;Parent=Msa0023090-mRNA-1
chr1_1 exon 43839618 43840174 43839618 ID=Msa0023090-mRNA-1:exon:12658;Parent=Msa0023090-mRNA-1
chr1_1 five_prime_UTR 43834543 43834969 43834543 ID=Msa0023090-mRNA-1:five_prime_utr;Parent=Msa0023090-mRNA-1
chr1_1 five_prime_UTR 43835165 43835368 43835165 ID=Msa0023090-mRNA-1:five_prime_utr;Parent=Msa0023090-mRNA-1
chr1_1 CDS 43835369 43836679 43835369 ID=Msa0023090-mRNA-1:cds;Parent=Msa0023090-mRNA-1
chr1_1 CDS 43837176 43837222 43837176 ID=Msa0023090-mRNA-1:cds;Parent=Msa0023090-mRNA-1
chr1_1 CDS 43839618 43839726 43839618 ID=Msa0023090-mRNA-1:cds;Parent=Msa0023090-mRNA-1
chr1_1 three_prime_UTR 43839727 43840174 43839727 ID=Msa0023090-mRNA-1:three_prime_utr;Parent=Msa0023090-mRNA-1
Gene Sequence

>Msa0023090

ATGGATTCGGAAAAAGTTCCATCTCCGAGGGATTTGTTGAAATGTTGTGATTGTGGATGTAGTTGTTCCTTGGTGGAACAATGTTCTGAAAAATGGATGCGTTCTGTTAAGCGAAAGCACGATGAGTTTAAATTGGATAGTGAGTTACCTGTGTCGTCGGTTGCGCGGGTTGATATTATGAATGAATGTGTGGTGTTACGTGAGATGGTTAGTATGCAGCAGAGAACGATTCAGGATTTGAATGAGGAGTTGGAGGAGGAGAGAAATTCTGCGTCCACAGCTGCGAATGAAGCAATGTCGATGATTTTGAGGTTGCAGAGGGAAAAGGCGGAAGTTCAAATGGAAGCTCGTCAGTTTAAGCGTTTTGCAGAGGAGAAAATGACGCATGATCAGGAGGAACTTATGTCTTTGGAAGATTTGTTGTACAAGAGAGAGCAGATAATTCAGTCGCTTACATGCGAAGTTCAGGCTTATAAACACAGGATGATGAGTTTTGGGTACACCGAGGATGAGGTCGAAGGTGATCAATATGATGATATTCCTCCATACGAATACCCTCCTTTAAAATGTAATATCATGTATAATGGCATGGATGCTGATAATGACGACACTGATATTGAGAAATATGCATTTGGTGAAACTCCTAATGACCGTTTGAGGAGCTTGGAGAATAGGATTTCTCAAATGGAGAAAACTCCCACTTACAGCCAGGTGGATGGTGATTTTATTGGAAAAAATGTTACGGAGAAAGTAATTGTTGGACAATCTCCAAATTTGACAAGCCACGCGAGAAAATTTTCCTCTGACTCAGCAACATTCGGTGGGATGTGTAAAGAAATAGGTTCCGAGTTCCCTACAGAGTCTCCCAAGAACAATAACAAGTATAAGAAGGATTATTTCTCTCAACCAGAGGACAATTCAAATTTGAAGAAGGTAGATAATGCTTCAGAAGGTGATGATACGAGTGACAGAATTTATACAATTGACTCTGTTCATTCTGGGGCACCGGATAATGGCTTTACAGGTTCCAAAGCTGGAGGTTTCGATGATTATGCAACCAGTCCAAAGGAATCAGGGAATCATCATCATGCTGATTTCGAAGATCCCTACATTAAGAAGCTTTACATGAGGCTTCAGGCACTTGAGGCTGATAGGGAATCAATGAGGCAGGCAATCATTTCAATGAGCACAGATAAAGCACAGGTTGTGTTACTGAAGGAAATAGCTCAGCATTTGTGCAAAGAGATGTCACCGCAAAGAAAAATGAGTACGAGCAAGCCTGCAAGATCTCGGTACTTGTCAATCTTTAAGTGGATCACCTCAATTGTTTTTTGGAGAAACAAAGCTCACCAAAGCAAGTATATGTTTGGGCTACCAACTGACAGTATGGGCTTGCTACTGCTCCTTGACAAAAGAACAAATGCAAGGCCACAAAGATGTATTTCAAGTACACAAGTGGGAGATTAA
Protein sequence

>Msa0023090

MDSEKVPSPRDLLKCCDCGCSCSLVEQCSEKWMRSVKRKHDEFKLDSELPVSSVARVDIMNECVVLREMVSMQQRTIQDLNEELEEERNSASTAANEAMSMILRLQREKAEVQMEARQFKRFAEEKMTHDQEELMSLEDLLYKREQIIQSLTCEVQAYKHRMMSFGYTEDEVEGDQYDDIPPYEYPPLKCNIMYNGMDADNDDTDIEKYAFGETPNDRLRSLENRISQMEKTPTYSQVDGDFIGKNVTEKVIVGQSPNLTSHARKFSSDSATFGGMCKEIGSEFPTESPKNNNKYKKDYFSQPEDNSNLKKVDNASEGDDTSDRIYTIDSVHSGAPDNGFTGSKAGGFDDYATSPKESGNHHHADFEDPYIKKLYMRLQALEADRESMRQAIISMSTDKAQVVLLKEIAQHLCKEMSPQRKMSTSKPARSRYLSIFKWITSIVFWRNKAHQSKYMFGLPTDSMGLLLLLDKRTNARPQRCISSTQVGD*