Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537890 | XP_039688589.1 | 79.675 | 123 | 23 | 2 | 4 | 125 | 3 | 124 | 5.99e-52 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537890 | sp|A0AT31|NLTP5_LENCU | 38.318 | 107 | 64 | 2 | 4 | 109 | 7 | 112 | 1.25e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537890 | G7JIC9 | 85.321 | 109 | 15 | 1 | 4 | 111 | 3 | 111 | 2.55e-51 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0537890 | 0.814664 | 1.373377e-51 | -8.615850e-47 |
| Msa0012460 | Msa0537890 | 0.803055 | 4.184158e-49 | -8.615850e-47 |
| Msa0017120 | Msa0537890 | 0.825619 | 4.247100e-54 | -8.615850e-47 |
| Msa0030730 | Msa0537890 | 0.818447 | 1.951183e-52 | -8.615850e-47 |
| Msa0056040 | Msa0537890 | 0.820528 | 6.540738e-53 | -8.615850e-47 |
| Msa0062750 | Msa0537890 | 0.813392 | 2.619304e-51 | -8.615850e-47 |
| Msa0065390 | Msa0537890 | 0.824862 | 6.414389e-54 | -8.615850e-47 |
| Msa0089210 | Msa0537890 | 0.841718 | 4.008314e-58 | -8.615850e-47 |
| Msa0092660 | Msa0537890 | 0.801175 | 1.019449e-48 | -8.615850e-47 |
| Msa0092680 | Msa0537890 | 0.801477 | 8.838822e-49 | -8.615850e-47 |
| Msa0092730 | Msa0537890 | 0.805151 | 1.533146e-49 | -8.615850e-47 |
| Msa0094420 | Msa0537890 | 0.806596 | 7.618107e-50 | -8.615850e-47 |
| Msa0105210 | Msa0537890 | 0.808253 | 3.391597e-50 | -8.615850e-47 |
| Msa0110710 | Msa0537890 | 0.829073 | 6.310500e-55 | -8.615850e-47 |
| Msa0123900 | Msa0537890 | 0.811940 | 5.444760e-51 | -8.615850e-47 |
| Msa0125230 | Msa0537890 | 0.809774 | 1.602695e-50 | -8.615850e-47 |
| Msa0137600 | Msa0537890 | 0.804766 | 1.844902e-49 | -8.615850e-47 |
| Msa0146470 | Msa0537890 | 0.800400 | 1.467231e-48 | -8.615850e-47 |
| Msa0149500 | Msa0537890 | 0.801563 | 8.486664e-49 | -8.615850e-47 |
| Msa0150210 | Msa0537890 | 0.814351 | 1.610547e-51 | -8.615850e-47 |
| Msa0153640 | Msa0537890 | 0.819119 | 1.372634e-52 | -8.615850e-47 |
| Msa0185390 | Msa0537890 | 0.803897 | 2.799150e-49 | -8.615850e-47 |
| Msa0207180 | Msa0537890 | 0.802816 | 4.688629e-49 | -8.615850e-47 |
| Msa0222070 | Msa0537890 | 0.800260 | 1.566969e-48 | -8.615850e-47 |
| Msa0222120 | Msa0537890 | 0.803694 | 3.084977e-49 | -8.615850e-47 |
| Msa0227490 | Msa0537890 | 0.807772 | 4.293696e-50 | -8.615850e-47 |
| Msa0227500 | Msa0537890 | 0.801210 | 1.002527e-48 | -8.615850e-47 |
| Msa0413180 | Msa0537890 | 0.804180 | 2.444263e-49 | -8.615850e-47 |
| Msa0415460 | Msa0537890 | 0.810846 | 9.409218e-51 | -8.615850e-47 |
| Msa0423110 | Msa0537890 | 0.801594 | 8.364275e-49 | -8.615850e-47 |
| Msa0432680 | Msa0537890 | 0.806907 | 6.547923e-50 | -8.615850e-47 |
| Msa0257130 | Msa0537890 | 0.811661 | 6.260995e-51 | -8.615850e-47 |
| Msa0263620 | Msa0537890 | 0.802064 | 6.696776e-49 | -8.615850e-47 |
| Msa0304870 | Msa0537890 | 0.800900 | 1.159827e-48 | -8.615850e-47 |
| Msa0315480 | Msa0537890 | 0.801274 | 9.729630e-49 | -8.615850e-47 |
| Msa0331780 | Msa0537890 | 0.802806 | 4.709824e-49 | -8.615850e-47 |
| Msa0334980 | Msa0537890 | 0.809417 | 1.912219e-50 | -8.615850e-47 |
| Msa0341260 | Msa0537890 | 0.800053 | 1.725717e-48 | -8.615850e-47 |
| Msa0537890 | Msa0538240 | 0.865938 | 4.107779e-65 | -8.615850e-47 |
| Msa0537890 | Msa0546740 | 0.803233 | 3.844821e-49 | -8.615850e-47 |
| Msa0537890 | Msa0550110 | 0.813622 | 2.331978e-51 | -8.615850e-47 |
| Msa0537890 | Msa0576420 | 0.811323 | 7.417003e-51 | -8.615850e-47 |
| Msa0537890 | Msa0600390 | 0.815174 | 1.057956e-51 | -8.615850e-47 |
| Msa0537890 | Msa0606060 | 0.823093 | 1.667589e-53 | -8.615850e-47 |
| Msa0537890 | Msa0607300 | 0.816928 | 4.294967e-52 | -8.615850e-47 |
| Msa0537890 | Msa0609990 | 0.805720 | 1.164973e-49 | -8.615850e-47 |
| Msa0537890 | Msa0619330 | 0.818298 | 2.108539e-52 | -8.615850e-47 |
| Msa0537890 | Msa0622390 | 0.806755 | 7.049812e-50 | -8.615850e-47 |
| Msa0537890 | Msa0633880 | 0.910812 | 1.231695e-82 | -8.615850e-47 |
| Msa0537890 | Msa0640880 | 0.800443 | 1.437701e-48 | -8.615850e-47 |
| Msa0537890 | Msa0681890 | 0.822424 | 2.386410e-53 | -8.615850e-47 |
| Msa0537890 | Msa0686610 | 0.823152 | 1.615825e-53 | -8.615850e-47 |
| Msa0537890 | Msa0702070 | 0.839799 | 1.276468e-57 | -8.615850e-47 |
| Msa0537890 | Msa0702120 | 0.831906 | 1.279744e-55 | -8.615850e-47 |
| Msa0537890 | Msa0703720 | 0.838404 | 2.934905e-57 | -8.615850e-47 |
| Msa0537890 | Msa0703760 | 0.821685 | 3.539918e-53 | -8.615850e-47 |
| Msa0537890 | Msa0704570 | 0.802407 | 5.692017e-49 | -8.615850e-47 |
| Msa0537890 | Msa0707780 | 0.807866 | 4.099376e-50 | -8.615850e-47 |
| Msa0537890 | Msa0709480 | 0.810872 | 9.287780e-51 | -8.615850e-47 |
| Msa0537890 | Msa0714020 | 0.816801 | 4.585361e-52 | -8.615850e-47 |
| Msa0537890 | Msa0714160 | 0.804897 | 1.732686e-49 | -8.615850e-47 |
| Msa0537890 | Msa0730180 | 0.802725 | 4.895359e-49 | -8.615850e-47 |
| Msa0537890 | Msa0770430 | 0.815092 | 1.103325e-51 | -8.615850e-47 |
| Msa0537890 | Msa0790830 | 0.804825 | 1.793756e-49 | -8.615850e-47 |
| Msa0537890 | Msa0820670 | 0.822502 | 2.288900e-53 | -8.615850e-47 |
| Msa0537890 | Msa0851740 | 0.807182 | 5.728547e-50 | -8.615850e-47 |
| Msa0537890 | Msa0906720 | 0.855397 | 6.485888e-62 | -8.615850e-47 |
| Msa0537890 | Msa0925160 | 0.814309 | 1.645270e-51 | -8.615850e-47 |
| Msa0537890 | Msa0930330 | 0.813264 | 2.795009e-51 | -8.615850e-47 |
| Msa0537890 | Msa0938970 | 0.857114 | 2.034507e-62 | -8.615850e-47 |
| Msa0537890 | Msa0955260 | 0.812745 | 3.631374e-51 | -8.615850e-47 |
| Msa0537890 | Msa0975910 | 0.849394 | 3.325735e-60 | -8.615850e-47 |
| Msa0537890 | Msa0990520 | 0.815941 | 7.141021e-52 | -8.615850e-47 |
| Msa0537890 | Msa1027790 | 0.819864 | 9.283512e-53 | -8.615850e-47 |
| Msa0537890 | Msa1028460 | 0.801746 | 7.784818e-49 | -8.615850e-47 |
| Msa0537890 | Msa1029320 | 0.807861 | 4.110833e-50 | -8.615850e-47 |
| Msa0537890 | Msa1051300 | 0.803753 | 2.999224e-49 | -8.615850e-47 |
| Msa0537890 | Msa1061180 | 0.810614 | 1.056061e-50 | -8.615850e-47 |
| Msa0537890 | Msa1081850 | 0.825462 | 4.627720e-54 | -8.615850e-47 |
| Msa0537890 | Msa1096280 | 0.803651 | 3.149156e-49 | -8.615850e-47 |
| Msa0537890 | Msa1097380 | 0.801835 | 7.463322e-49 | -8.615850e-47 |
| Msa0537890 | Msa1106560 | 0.800460 | 1.426420e-48 | -8.615850e-47 |
| Msa0537890 | Msa1112610 | 0.813992 | 1.932766e-51 | -8.615850e-47 |
| Msa0537890 | Msa1125780 | 0.813227 | 2.847875e-51 | -8.615850e-47 |
| Msa0537890 | Msa1125950 | 0.811624 | 6.378819e-51 | -8.615850e-47 |
| Msa0537890 | Msa1149760 | 0.837426 | 5.234426e-57 | -8.615850e-47 |
| Msa0537890 | Msa1151120 | 0.807004 | 6.245860e-50 | -8.615850e-47 |
| Msa0537890 | Msa1166180 | 0.812222 | 4.726956e-51 | -8.615850e-47 |
| Msa0537890 | Msa1166280 | 0.809088 | 2.248760e-50 | -8.615850e-47 |
| Msa0537890 | Msa1171340 | 0.814371 | 1.593724e-51 | -8.615850e-47 |
| Msa0537890 | Msa1214080 | 0.800175 | 1.630087e-48 | -8.615850e-47 |
| Msa0537890 | Msa1219250 | 0.800852 | 1.186547e-48 | -8.615850e-47 |
| Msa0537890 | Msa1220460 | -0.800515 | 1.390300e-48 | -8.615850e-47 |
| Msa0537890 | Msa1226600 | 0.813754 | 2.180626e-51 | -8.615850e-47 |
| Msa0537890 | Msa1250670 | 0.816999 | 4.138929e-52 | -8.615850e-47 |
| Msa0537890 | Msa1300880 | 0.815152 | 1.070087e-51 | -8.615850e-47 |
| Msa0537890 | Msa1302150 | 0.806185 | 9.298096e-50 | -8.615850e-47 |
| Msa0537890 | Msa1325650 | 0.811566 | 6.568229e-51 | -8.615850e-47 |
| Msa0537890 | Msa1325980 | 0.804352 | 2.251340e-49 | -8.615850e-47 |
| Msa0537890 | Msa1326000 | 0.821772 | 3.380466e-53 | -8.615850e-47 |
| Msa0537890 | Msa1352820 | 0.814374 | 1.591915e-51 | -8.615850e-47 |
| Msa0537890 | Msa1354040 | 0.825906 | 3.631360e-54 | -8.615850e-47 |
| Msa0537890 | Msa1381130 | 0.806102 | 9.682219e-50 | -8.615850e-47 |
| Msa0537890 | Msa1388230 | 0.809130 | 2.202486e-50 | -8.615850e-47 |
| Msa0537890 | Msa1397110 | 0.801130 | 1.040877e-48 | -8.615850e-47 |
| Msa0537890 | Msa1405770 | 0.806996 | 6.269439e-50 | -8.615850e-47 |
| Msa0537890 | Msa1410170 | 0.804881 | 1.746193e-49 | -8.615850e-47 |
| Msa0537890 | Msa1418200 | 0.804995 | 1.652706e-49 | -8.615850e-47 |
| Msa0537890 | Msa1432470 | 0.821080 | 4.882061e-53 | -8.615850e-47 |
| Msa0537890 | Msa1439670 | 0.801963 | 7.026216e-49 | -8.615850e-47 |
| Msa0537890 | Msa1439800 | 0.802082 | 6.640279e-49 | -8.615850e-47 |
| Msa0537890 | Msa1442030 | 0.806355 | 8.563613e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537890 | MtrunA17_Chr4g0012941 | 81.690 | 71 | 12 | 1 | 42 | 111 | 7 | 77 | 9.85e-29 | 103 |
| Msa0537890 | MtrunA17_Chr7g0228651 | 82.979 | 47 | 8 | 0 | 162 | 208 | 11 | 57 | 1.76e-18 | 77.0 |
| Msa0537890 | MtrunA17_Chr4g0013001 | 34.579 | 107 | 68 | 2 | 4 | 109 | 6 | 111 | 3.83e-18 | 76.6 |
| Msa0537890 | MtrunA17_Chr4g0012961 | 33.645 | 107 | 69 | 2 | 4 | 109 | 6 | 111 | 7.31e-18 | 75.9 |
| Msa0537890 | MtrunA17_Chr4g0012951 | 35.514 | 107 | 67 | 2 | 4 | 109 | 6 | 111 | 1.06e-17 | 75.5 |
| Msa0537890 | MtrunA17_Chr4g0012991 | 34.579 | 107 | 68 | 2 | 4 | 109 | 61 | 166 | 2.09e-17 | 76.3 |
| Msa0537890 | MtrunA17_Chr4g0012931 | 40.517 | 116 | 56 | 3 | 4 | 111 | 6 | 116 | 1.62e-16 | 72.8 |
| Msa0537890 | MtrunA17_Chr4g0013251 | 35.238 | 105 | 65 | 2 | 7 | 109 | 9 | 112 | 1.30e-13 | 64.7 |
| Msa0537890 | MtrunA17_Chr4g0013261 | 34.259 | 108 | 68 | 2 | 4 | 109 | 6 | 112 | 2.10e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTGCTTCACAACAATA+TGG | 0.222130 | 4_1:-16950375 | None:intergenic |
| GAATAGCACATAAGGCAAAT+AGG | 0.312637 | 4_1:-16950506 | None:intergenic |
| GCAGGTTCAGGAACCTTGTT+TGG | 0.321755 | 4_1:-16952145 | None:intergenic |
| TTGAAAACTTCTGCAGGTTC+AGG | 0.330028 | 4_1:-16952157 | None:intergenic |
| TGGAACTTCCACTGATTGTA+AGG | 0.386809 | 4_1:-16952125 | None:intergenic |
| AATCTATCAGCTTCTGCAAT+AGG | 0.389891 | 4_1:-16950285 | None:intergenic |
| AGTAAGAGTATAAATAATAA+AGG | 0.397290 | 4_1:-16950310 | None:intergenic |
| GGTCGTTGCATGTCTCGTTT+TGG | 0.415995 | 4_1:+16950242 | Msa0537890:CDS |
| GAAATATAACCTTGAAGAAA+AGG | 0.420263 | 4_1:-16950342 | None:intergenic |
| GAGCCAAGATGCTCATTTAG+AGG | 0.425503 | 4_1:+16952180 | Msa0537890:CDS |
| AATAGCACATAAGGCAAATA+GGG | 0.426613 | 4_1:-16950505 | None:intergenic |
| AGTTGATATCGCGAGTAATC+TGG | 0.431895 | 4_1:-16950539 | None:intergenic |
| AAATGTTGGGAGACAAGAAC+AGG | 0.438157 | 4_1:+16952012 | Msa0537890:CDS |
| TGGCTCTTGAAAACTTCTGC+AGG | 0.450689 | 4_1:-16952163 | None:intergenic |
| TTGTGACTGCTTGAGAGATA+TGG | 0.453187 | 4_1:+16950443 | Msa0537890:CDS |
| TCACTGCTTCACAACAATAT+GGG | 0.474158 | 4_1:-16950374 | None:intergenic |
| CTGCCTCTAAATGAGCATCT+TGG | 0.482937 | 4_1:-16952183 | None:intergenic |
| AGAAGTGATTGATACAGAAA+AGG | 0.493252 | 4_1:+16952045 | Msa0537890:CDS |
| GGGTGTTTGAATAGCACATA+AGG | 0.499046 | 4_1:-16950514 | None:intergenic |
| CAATGCTAATATTGATGAAG+AGG | 0.506239 | 4_1:+16952210 | Msa0537890:CDS |
| CCTTGAAGAAAAGGATAGCA+TGG | 0.525784 | 4_1:-16950333 | None:intergenic |
| CAATTAGAGAATGAAGTTGA+AGG | 0.534278 | 4_1:+16952076 | Msa0537890:CDS |
| TTCTTTAAAGACTTTGAGTG+TGG | 0.544723 | 4_1:+16950470 | Msa0537890:CDS |
| AAGACTTTGAGTGTGGAGAA+TGG | 0.572741 | 4_1:+16950477 | Msa0537890:CDS |
| TGCTGATGCCTTACAATCAG+TGG | 0.587460 | 4_1:+16952117 | Msa0537890:CDS |
| GATATCGCGAGTAATCTGGT+AGG | 0.618889 | 4_1:-16950535 | None:intergenic |
| ATATCGCGAGTAATCTGGTA+GGG | 0.629903 | 4_1:-16950534 | None:intergenic |
| ATCAGTGGAAGTTCCAAACA+AGG | 0.639476 | 4_1:+16952132 | Msa0537890:CDS |
| TAGACGATCATCATAGTCGA+TGG | 0.640137 | 4_1:-16950415 | None:intergenic |
| GATGAATCAGTTAGTTCACA+AGG | 0.661264 | 4_1:+16952256 | Msa0537890:CDS |
| AATGTTGGGAGACAAGAACA+GGG | 0.723797 | 4_1:+16952013 | Msa0537890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAAGAGTATAAATAATAA+AGG | - | chr4_1:16950313-16950332 | None:intergenic | 15.0% |
| !!! | AGTAAGAGTATAAATAATAA+AGG | - | chr4_1:16950313-16950332 | None:intergenic | 15.0% |
| !! | TCAATGTTATGTTATTGTTA+TGG | - | chr4_1:16950631-16950650 | None:intergenic | 20.0% |
| !! | AATCTCGTTTATATATTAGT+TGG | + | chr4_1:16950886-16950905 | Msa0537890:intron | 20.0% |
| !! | ATGTTCATATGAAATTACAT+CGG | + | chr4_1:16950947-16950966 | Msa0537890:intron | 20.0% |
| !! | ATATTCTATTTCCACAAAAA+AGG | - | chr4_1:16951837-16951856 | None:intergenic | 20.0% |
| !! | TCAATGTTATGTTATTGTTA+TGG | - | chr4_1:16950631-16950650 | None:intergenic | 20.0% |
| !! | AATCTCGTTTATATATTAGT+TGG | + | chr4_1:16950886-16950905 | Msa0537890:intron | 20.0% |
| !! | ATGTTCATATGAAATTACAT+CGG | + | chr4_1:16950947-16950966 | Msa0537890:intron | 20.0% |
| !! | ATATTCTATTTCCACAAAAA+AGG | - | chr4_1:16951837-16951856 | None:intergenic | 20.0% |
| ! | GAAATATAACCTTGAAGAAA+AGG | - | chr4_1:16950345-16950364 | None:intergenic | 25.0% |
| !! | TTAGTGAAAGTATACATACT+TGG | - | chr4_1:16950568-16950587 | None:intergenic | 25.0% |
| ! | TCGTTTATATATTAGTTGGT+AGG | + | chr4_1:16950890-16950909 | Msa0537890:intron | 25.0% |
| !!! | TGTTAGATAGGTGTTTTTTT+TGG | - | chr4_1:16951179-16951198 | None:intergenic | 25.0% |
| !! | TTTTTGTCCAGAAAAATGTT+GGG | + | chr4_1:16951999-16952018 | Msa0537890:CDS | 25.0% |
| ! | GAAATATAACCTTGAAGAAA+AGG | - | chr4_1:16950345-16950364 | None:intergenic | 25.0% |
| !! | TTAGTGAAAGTATACATACT+TGG | - | chr4_1:16950568-16950587 | None:intergenic | 25.0% |
| ! | TCGTTTATATATTAGTTGGT+AGG | + | chr4_1:16950890-16950909 | Msa0537890:intron | 25.0% |
| !!! | TGTTAGATAGGTGTTTTTTT+TGG | - | chr4_1:16951179-16951198 | None:intergenic | 25.0% |
| !! | TTTTTGTCCAGAAAAATGTT+GGG | + | chr4_1:16951999-16952018 | Msa0537890:CDS | 25.0% |
| ! | TTCTTTAAAGACTTTGAGTG+TGG | + | chr4_1:16950470-16950489 | Msa0537890:CDS | 30.0% |
| AATAGCACATAAGGCAAATA+GGG | - | chr4_1:16950508-16950527 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTAGTAACACTCT+TGG | + | chr4_1:16950603-16950622 | Msa0537890:intron | 30.0% |
| ! | TTTGAAGTAGTAACACTCTT+GGG | + | chr4_1:16950604-16950623 | Msa0537890:intron | 30.0% |
| GATGAAGACTAACAACTAAT+AGG | - | chr4_1:16950654-16950673 | None:intergenic | 30.0% | |
| TCAAAATCTAAGCATTTCCA+GGG | - | chr4_1:16951149-16951168 | None:intergenic | 30.0% | |
| !!! | TAGGTGTTTTTTTTGGTTCA+AGG | - | chr4_1:16951172-16951191 | None:intergenic | 30.0% |
| GATTGCAAATTCAATCTACA+TGG | + | chr4_1:16951338-16951357 | Msa0537890:intron | 30.0% | |
| !! | AAGAGTTAGCTTGCAATTTA+GGG | - | chr4_1:16951592-16951611 | None:intergenic | 30.0% |
| GTATTGTGATCTGTACAAAT+AGG | - | chr4_1:16951704-16951723 | None:intergenic | 30.0% | |
| !! | AAAAGGTTTTGCCTTTTTTG+TGG | + | chr4_1:16951823-16951842 | Msa0537890:intron | 30.0% |
| ! | ATGTGGATTATTGCAAGAAA+TGG | + | chr4_1:16951903-16951922 | Msa0537890:intron | 30.0% |
| GATTATTGCAAGAAATGGAA+TGG | + | chr4_1:16951908-16951927 | Msa0537890:intron | 30.0% | |
| TTCTGGACAAAAACTTTCTT+TGG | - | chr4_1:16951992-16952011 | None:intergenic | 30.0% | |
| ! | GTTTTTGTCCAGAAAAATGT+TGG | + | chr4_1:16951998-16952017 | Msa0537890:CDS | 30.0% |
| AGAAGTGATTGATACAGAAA+AGG | + | chr4_1:16952045-16952064 | Msa0537890:CDS | 30.0% | |
| CAATTAGAGAATGAAGTTGA+AGG | + | chr4_1:16952076-16952095 | Msa0537890:CDS | 30.0% | |
| CAATGCTAATATTGATGAAG+AGG | + | chr4_1:16952210-16952229 | Msa0537890:CDS | 30.0% | |
| ! | TTCTTTAAAGACTTTGAGTG+TGG | + | chr4_1:16950470-16950489 | Msa0537890:CDS | 30.0% |
| AATAGCACATAAGGCAAATA+GGG | - | chr4_1:16950508-16950527 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTAGTAACACTCT+TGG | + | chr4_1:16950603-16950622 | Msa0537890:intron | 30.0% |
| ! | TTTGAAGTAGTAACACTCTT+GGG | + | chr4_1:16950604-16950623 | Msa0537890:intron | 30.0% |
| GATGAAGACTAACAACTAAT+AGG | - | chr4_1:16950654-16950673 | None:intergenic | 30.0% | |
| TCAAAATCTAAGCATTTCCA+GGG | - | chr4_1:16951149-16951168 | None:intergenic | 30.0% | |
| !!! | TAGGTGTTTTTTTTGGTTCA+AGG | - | chr4_1:16951172-16951191 | None:intergenic | 30.0% |
| GATTGCAAATTCAATCTACA+TGG | + | chr4_1:16951338-16951357 | Msa0537890:intron | 30.0% | |
| !! | AAGAGTTAGCTTGCAATTTA+GGG | - | chr4_1:16951592-16951611 | None:intergenic | 30.0% |
| GTATTGTGATCTGTACAAAT+AGG | - | chr4_1:16951704-16951723 | None:intergenic | 30.0% | |
| !! | AAAAGGTTTTGCCTTTTTTG+TGG | + | chr4_1:16951823-16951842 | Msa0537890:intron | 30.0% |
| ! | ATGTGGATTATTGCAAGAAA+TGG | + | chr4_1:16951903-16951922 | Msa0537890:intron | 30.0% |
| GATTATTGCAAGAAATGGAA+TGG | + | chr4_1:16951908-16951927 | Msa0537890:intron | 30.0% | |
| TTCTGGACAAAAACTTTCTT+TGG | - | chr4_1:16951992-16952011 | None:intergenic | 30.0% | |
| ! | GTTTTTGTCCAGAAAAATGT+TGG | + | chr4_1:16951998-16952017 | Msa0537890:CDS | 30.0% |
| AGAAGTGATTGATACAGAAA+AGG | + | chr4_1:16952045-16952064 | Msa0537890:CDS | 30.0% | |
| CAATTAGAGAATGAAGTTGA+AGG | + | chr4_1:16952076-16952095 | Msa0537890:CDS | 30.0% | |
| CAATGCTAATATTGATGAAG+AGG | + | chr4_1:16952210-16952229 | Msa0537890:CDS | 30.0% | |
| AATCTATCAGCTTCTGCAAT+AGG | - | chr4_1:16950288-16950307 | None:intergenic | 35.0% | |
| TCACTGCTTCACAACAATAT+GGG | - | chr4_1:16950377-16950396 | None:intergenic | 35.0% | |
| TTCACTGCTTCACAACAATA+TGG | - | chr4_1:16950378-16950397 | None:intergenic | 35.0% | |
| GAATAGCACATAAGGCAAAT+AGG | - | chr4_1:16950509-16950528 | None:intergenic | 35.0% | |
| TGGTGAAAGGAAAGAAGAAA+CGG | - | chr4_1:16951109-16951128 | None:intergenic | 35.0% | |
| GTCAAAATCTAAGCATTTCC+AGG | - | chr4_1:16951150-16951169 | None:intergenic | 35.0% | |
| !! | TGAGGTTTAGGTTGTTAGAT+AGG | - | chr4_1:16951191-16951210 | None:intergenic | 35.0% |
| !!! | GCAAAGGTTTTTTGAGGTTT+AGG | - | chr4_1:16951203-16951222 | None:intergenic | 35.0% |
| ATCTACATGGTAGAGTGATT+TGG | + | chr4_1:16951351-16951370 | Msa0537890:intron | 35.0% | |
| !! | CGATGTTAACTTGGCTTTTA+AGG | - | chr4_1:16951408-16951427 | None:intergenic | 35.0% |
| TATGGAAGAACTTATCACCA+TGG | + | chr4_1:16951429-16951448 | Msa0537890:intron | 35.0% | |
| ATGGAAGAACTTATCACCAT+GGG | + | chr4_1:16951430-16951449 | Msa0537890:intron | 35.0% | |
| ATTAAGATTCCAAGAAGCGA+AGG | - | chr4_1:16951528-16951547 | None:intergenic | 35.0% | |
| CTTCTTGGAATCTTAATCCT+GGG | + | chr4_1:16951531-16951550 | Msa0537890:intron | 35.0% | |
| !! | GAAGAGTTAGCTTGCAATTT+AGG | - | chr4_1:16951593-16951612 | None:intergenic | 35.0% |
| AATATTCTTGAGCCAAACCA+TGG | - | chr4_1:16951637-16951656 | None:intergenic | 35.0% | |
| ! | ATGGTTTGGCTCAAGAATAT+TGG | + | chr4_1:16951636-16951655 | Msa0537890:intron | 35.0% |
| ! | ATCATTTTCTCAATCGCTAG+TGG | + | chr4_1:16951668-16951687 | Msa0537890:intron | 35.0% |
| CTGCAATAAGTACAATATGC+AGG | - | chr4_1:16951869-16951888 | None:intergenic | 35.0% | |
| CTGCATATTGTACTTATTGC+AGG | + | chr4_1:16951867-16951886 | Msa0537890:intron | 35.0% | |
| !! | TGTACTTATTGCAGGTTGAT+TGG | + | chr4_1:16951875-16951894 | Msa0537890:intron | 35.0% |
| !!! | GACAGGTTTTTTCTTTGCTA+GGG | - | chr4_1:16951963-16951982 | None:intergenic | 35.0% |
| !!! | TGACAGGTTTTTTCTTTGCT+AGG | - | chr4_1:16951964-16951983 | None:intergenic | 35.0% |
| AATCTATCAGCTTCTGCAAT+AGG | - | chr4_1:16950288-16950307 | None:intergenic | 35.0% | |
| TCACTGCTTCACAACAATAT+GGG | - | chr4_1:16950377-16950396 | None:intergenic | 35.0% | |
| TTCACTGCTTCACAACAATA+TGG | - | chr4_1:16950378-16950397 | None:intergenic | 35.0% | |
| GAATAGCACATAAGGCAAAT+AGG | - | chr4_1:16950509-16950528 | None:intergenic | 35.0% | |
| TGGTGAAAGGAAAGAAGAAA+CGG | - | chr4_1:16951109-16951128 | None:intergenic | 35.0% | |
| GTCAAAATCTAAGCATTTCC+AGG | - | chr4_1:16951150-16951169 | None:intergenic | 35.0% | |
| !! | TGAGGTTTAGGTTGTTAGAT+AGG | - | chr4_1:16951191-16951210 | None:intergenic | 35.0% |
| !!! | GCAAAGGTTTTTTGAGGTTT+AGG | - | chr4_1:16951203-16951222 | None:intergenic | 35.0% |
| ATCTACATGGTAGAGTGATT+TGG | + | chr4_1:16951351-16951370 | Msa0537890:intron | 35.0% | |
| !! | CGATGTTAACTTGGCTTTTA+AGG | - | chr4_1:16951408-16951427 | None:intergenic | 35.0% |
| TATGGAAGAACTTATCACCA+TGG | + | chr4_1:16951429-16951448 | Msa0537890:intron | 35.0% | |
| ATGGAAGAACTTATCACCAT+GGG | + | chr4_1:16951430-16951449 | Msa0537890:intron | 35.0% | |
| ATTAAGATTCCAAGAAGCGA+AGG | - | chr4_1:16951528-16951547 | None:intergenic | 35.0% | |
| CTTCTTGGAATCTTAATCCT+GGG | + | chr4_1:16951531-16951550 | Msa0537890:intron | 35.0% | |
| !! | GAAGAGTTAGCTTGCAATTT+AGG | - | chr4_1:16951593-16951612 | None:intergenic | 35.0% |
| AATATTCTTGAGCCAAACCA+TGG | - | chr4_1:16951637-16951656 | None:intergenic | 35.0% | |
| ! | ATGGTTTGGCTCAAGAATAT+TGG | + | chr4_1:16951636-16951655 | Msa0537890:intron | 35.0% |
| ! | ATCATTTTCTCAATCGCTAG+TGG | + | chr4_1:16951668-16951687 | Msa0537890:intron | 35.0% |
| CTGCAATAAGTACAATATGC+AGG | - | chr4_1:16951869-16951888 | None:intergenic | 35.0% | |
| CTGCATATTGTACTTATTGC+AGG | + | chr4_1:16951867-16951886 | Msa0537890:intron | 35.0% | |
| !! | TGTACTTATTGCAGGTTGAT+TGG | + | chr4_1:16951875-16951894 | Msa0537890:intron | 35.0% |
| !!! | GACAGGTTTTTTCTTTGCTA+GGG | - | chr4_1:16951963-16951982 | None:intergenic | 35.0% |
| !!! | TGACAGGTTTTTTCTTTGCT+AGG | - | chr4_1:16951964-16951983 | None:intergenic | 35.0% |
| CCTTGAAGAAAAGGATAGCA+TGG | - | chr4_1:16950336-16950355 | None:intergenic | 40.0% | |
| ! | CCATGCTATCCTTTTCTTCA+AGG | + | chr4_1:16950333-16950352 | Msa0537890:CDS | 40.0% |
| TAGACGATCATCATAGTCGA+TGG | - | chr4_1:16950418-16950437 | None:intergenic | 40.0% | |
| TTGTGACTGCTTGAGAGATA+TGG | + | chr4_1:16950443-16950462 | Msa0537890:CDS | 40.0% | |
| AAGACTTTGAGTGTGGAGAA+TGG | + | chr4_1:16950477-16950496 | Msa0537890:CDS | 40.0% | |
| GGGTGTTTGAATAGCACATA+AGG | - | chr4_1:16950517-16950536 | None:intergenic | 40.0% | |
| ATATCGCGAGTAATCTGGTA+GGG | - | chr4_1:16950537-16950556 | None:intergenic | 40.0% | |
| ! | AGTTGATATCGCGAGTAATC+TGG | - | chr4_1:16950542-16950561 | None:intergenic | 40.0% |
| AGACATAGAAAGAGAAGCTC+TGG | + | chr4_1:16951006-16951025 | Msa0537890:intron | 40.0% | |
| GGATAACTACACAAGGTTGA+AGG | - | chr4_1:16951065-16951084 | None:intergenic | 40.0% | |
| CGGTTAAGGATAACTACACA+AGG | - | chr4_1:16951072-16951091 | None:intergenic | 40.0% | |
| AAGAAACGGCTGGAAATTGA+AGG | - | chr4_1:16951095-16951114 | None:intergenic | 40.0% | |
| TTAAAGGTGGACATGGTGAA+AGG | - | chr4_1:16951122-16951141 | None:intergenic | 40.0% | |
| TTTCCAGGGTATGTTAAAGG+TGG | - | chr4_1:16951135-16951154 | None:intergenic | 40.0% | |
| GCATTTCCAGGGTATGTTAA+AGG | - | chr4_1:16951138-16951157 | None:intergenic | 40.0% | |
| !!! | GCTTCAGCAAAGGTTTTTTG+AGG | - | chr4_1:16951209-16951228 | None:intergenic | 40.0% |
| GTTTGATACAGCTTCAGCAA+AGG | - | chr4_1:16951219-16951238 | None:intergenic | 40.0% | |
| GATTACTGCTTGAGGAAGTT+GGG | - | chr4_1:16951261-16951280 | None:intergenic | 40.0% | |
| TGATTACTGCTTGAGGAAGT+TGG | - | chr4_1:16951262-16951281 | None:intergenic | 40.0% | |
| ACTTCCTCAAGCAGTAATCA+AGG | + | chr4_1:16951262-16951281 | Msa0537890:intron | 40.0% | |
| CTTCCTCAAGCAGTAATCAA+GGG | + | chr4_1:16951263-16951282 | Msa0537890:intron | 40.0% | |
| CTATGCTATTCAGATTCCTG+AGG | + | chr4_1:16951292-16951311 | Msa0537890:intron | 40.0% | |
| AAGCCAAGTTAACATCGCTA+TGG | + | chr4_1:16951411-16951430 | Msa0537890:intron | 40.0% | |
| CTTCCATAGCGATGTTAACT+TGG | - | chr4_1:16951417-16951436 | None:intergenic | 40.0% | |
| TGGAAGAACTTATCACCATG+GGG | + | chr4_1:16951431-16951450 | Msa0537890:intron | 40.0% | |
| TACCTTTCTGACATCTTCCA+GGG | - | chr4_1:16951501-16951520 | None:intergenic | 40.0% | |
| TTACCTTTCTGACATCTTCC+AGG | - | chr4_1:16951502-16951521 | None:intergenic | 40.0% | |
| GCTTCTTGGAATCTTAATCC+TGG | + | chr4_1:16951530-16951549 | Msa0537890:intron | 40.0% | |
| GGAAACAATTTCAGAAACCC+AGG | - | chr4_1:16951551-16951570 | None:intergenic | 40.0% | |
| !! | GGTTTCTGAAATTGTTTCCC+TGG | + | chr4_1:16951552-16951571 | Msa0537890:intron | 40.0% |
| GGGTTAAAATCTCTTGTCCA+GGG | - | chr4_1:16951572-16951591 | None:intergenic | 40.0% | |
| AGGGTTAAAATCTCTTGTCC+AGG | - | chr4_1:16951573-16951592 | None:intergenic | 40.0% | |
| TAACTCTTCAGCTCAAGTCT+GGG | + | chr4_1:16951604-16951623 | Msa0537890:intron | 40.0% | |
| ! | GTTTGGCTCAAGAATATTGG+AGG | + | chr4_1:16951639-16951658 | Msa0537890:intron | 40.0% |
| CTGTACAAATAGGAGATCCT+AGG | - | chr4_1:16951694-16951713 | None:intergenic | 40.0% | |
| TCACAATACTGCAAAGCCTA+TGG | + | chr4_1:16951715-16951734 | Msa0537890:intron | 40.0% | |
| ! | CAAAACCTTTTCTTTCCACC+AGG | - | chr4_1:16951814-16951833 | None:intergenic | 40.0% |
| TTTGCTAGGGTTTCATTGTC+TGG | - | chr4_1:16951950-16951969 | None:intergenic | 40.0% | |
| !! | ACTTTCTTTGGTTCTCTGAC+AGG | - | chr4_1:16951980-16951999 | None:intergenic | 40.0% |
| ! | CTTGTCTCCCAACATTTTTC+TGG | - | chr4_1:16952009-16952028 | None:intergenic | 40.0% |
| AAATGTTGGGAGACAAGAAC+AGG | + | chr4_1:16952012-16952031 | Msa0537890:CDS | 40.0% | |
| AATGTTGGGAGACAAGAACA+GGG | + | chr4_1:16952013-16952032 | Msa0537890:CDS | 40.0% | |
| ! | TGGAACTTCCACTGATTGTA+AGG | - | chr4_1:16952128-16952147 | None:intergenic | 40.0% |
| ATCAGTGGAAGTTCCAAACA+AGG | + | chr4_1:16952132-16952151 | Msa0537890:CDS | 40.0% | |
| TTGAAAACTTCTGCAGGTTC+AGG | - | chr4_1:16952160-16952179 | None:intergenic | 40.0% | |
| CCTTGAAGAAAAGGATAGCA+TGG | - | chr4_1:16950336-16950355 | None:intergenic | 40.0% | |
| ! | CCATGCTATCCTTTTCTTCA+AGG | + | chr4_1:16950333-16950352 | Msa0537890:CDS | 40.0% |
| TAGACGATCATCATAGTCGA+TGG | - | chr4_1:16950418-16950437 | None:intergenic | 40.0% | |
| TTGTGACTGCTTGAGAGATA+TGG | + | chr4_1:16950443-16950462 | Msa0537890:CDS | 40.0% | |
| AAGACTTTGAGTGTGGAGAA+TGG | + | chr4_1:16950477-16950496 | Msa0537890:CDS | 40.0% | |
| GGGTGTTTGAATAGCACATA+AGG | - | chr4_1:16950517-16950536 | None:intergenic | 40.0% | |
| ATATCGCGAGTAATCTGGTA+GGG | - | chr4_1:16950537-16950556 | None:intergenic | 40.0% | |
| ! | AGTTGATATCGCGAGTAATC+TGG | - | chr4_1:16950542-16950561 | None:intergenic | 40.0% |
| AGACATAGAAAGAGAAGCTC+TGG | + | chr4_1:16951006-16951025 | Msa0537890:intron | 40.0% | |
| GGATAACTACACAAGGTTGA+AGG | - | chr4_1:16951065-16951084 | None:intergenic | 40.0% | |
| CGGTTAAGGATAACTACACA+AGG | - | chr4_1:16951072-16951091 | None:intergenic | 40.0% | |
| AAGAAACGGCTGGAAATTGA+AGG | - | chr4_1:16951095-16951114 | None:intergenic | 40.0% | |
| TTAAAGGTGGACATGGTGAA+AGG | - | chr4_1:16951122-16951141 | None:intergenic | 40.0% | |
| TTTCCAGGGTATGTTAAAGG+TGG | - | chr4_1:16951135-16951154 | None:intergenic | 40.0% | |
| GCATTTCCAGGGTATGTTAA+AGG | - | chr4_1:16951138-16951157 | None:intergenic | 40.0% | |
| !!! | GCTTCAGCAAAGGTTTTTTG+AGG | - | chr4_1:16951209-16951228 | None:intergenic | 40.0% |
| GTTTGATACAGCTTCAGCAA+AGG | - | chr4_1:16951219-16951238 | None:intergenic | 40.0% | |
| GATTACTGCTTGAGGAAGTT+GGG | - | chr4_1:16951261-16951280 | None:intergenic | 40.0% | |
| TGATTACTGCTTGAGGAAGT+TGG | - | chr4_1:16951262-16951281 | None:intergenic | 40.0% | |
| ACTTCCTCAAGCAGTAATCA+AGG | + | chr4_1:16951262-16951281 | Msa0537890:intron | 40.0% | |
| CTTCCTCAAGCAGTAATCAA+GGG | + | chr4_1:16951263-16951282 | Msa0537890:intron | 40.0% | |
| CTATGCTATTCAGATTCCTG+AGG | + | chr4_1:16951292-16951311 | Msa0537890:intron | 40.0% | |
| AAGCCAAGTTAACATCGCTA+TGG | + | chr4_1:16951411-16951430 | Msa0537890:intron | 40.0% | |
| CTTCCATAGCGATGTTAACT+TGG | - | chr4_1:16951417-16951436 | None:intergenic | 40.0% | |
| TGGAAGAACTTATCACCATG+GGG | + | chr4_1:16951431-16951450 | Msa0537890:intron | 40.0% | |
| TACCTTTCTGACATCTTCCA+GGG | - | chr4_1:16951501-16951520 | None:intergenic | 40.0% | |
| TTACCTTTCTGACATCTTCC+AGG | - | chr4_1:16951502-16951521 | None:intergenic | 40.0% | |
| GCTTCTTGGAATCTTAATCC+TGG | + | chr4_1:16951530-16951549 | Msa0537890:intron | 40.0% | |
| GGAAACAATTTCAGAAACCC+AGG | - | chr4_1:16951551-16951570 | None:intergenic | 40.0% | |
| !! | GGTTTCTGAAATTGTTTCCC+TGG | + | chr4_1:16951552-16951571 | Msa0537890:intron | 40.0% |
| GGGTTAAAATCTCTTGTCCA+GGG | - | chr4_1:16951572-16951591 | None:intergenic | 40.0% | |
| AGGGTTAAAATCTCTTGTCC+AGG | - | chr4_1:16951573-16951592 | None:intergenic | 40.0% | |
| TAACTCTTCAGCTCAAGTCT+GGG | + | chr4_1:16951604-16951623 | Msa0537890:intron | 40.0% | |
| ! | GTTTGGCTCAAGAATATTGG+AGG | + | chr4_1:16951639-16951658 | Msa0537890:intron | 40.0% |
| CTGTACAAATAGGAGATCCT+AGG | - | chr4_1:16951694-16951713 | None:intergenic | 40.0% | |
| TCACAATACTGCAAAGCCTA+TGG | + | chr4_1:16951715-16951734 | Msa0537890:intron | 40.0% | |
| ! | CAAAACCTTTTCTTTCCACC+AGG | - | chr4_1:16951814-16951833 | None:intergenic | 40.0% |
| TTTGCTAGGGTTTCATTGTC+TGG | - | chr4_1:16951950-16951969 | None:intergenic | 40.0% | |
| !! | ACTTTCTTTGGTTCTCTGAC+AGG | - | chr4_1:16951980-16951999 | None:intergenic | 40.0% |
| ! | CTTGTCTCCCAACATTTTTC+TGG | - | chr4_1:16952009-16952028 | None:intergenic | 40.0% |
| AAATGTTGGGAGACAAGAAC+AGG | + | chr4_1:16952012-16952031 | Msa0537890:CDS | 40.0% | |
| AATGTTGGGAGACAAGAACA+GGG | + | chr4_1:16952013-16952032 | Msa0537890:CDS | 40.0% | |
| ! | TGGAACTTCCACTGATTGTA+AGG | - | chr4_1:16952128-16952147 | None:intergenic | 40.0% |
| ATCAGTGGAAGTTCCAAACA+AGG | + | chr4_1:16952132-16952151 | Msa0537890:CDS | 40.0% | |
| TTGAAAACTTCTGCAGGTTC+AGG | - | chr4_1:16952160-16952179 | None:intergenic | 40.0% | |
| GATATCGCGAGTAATCTGGT+AGG | - | chr4_1:16950538-16950557 | None:intergenic | 45.0% | |
| CTGGAAATTGAAGGCGGTTA+AGG | - | chr4_1:16951086-16951105 | None:intergenic | 45.0% | |
| AAACGGCTGGAAATTGAAGG+CGG | - | chr4_1:16951092-16951111 | None:intergenic | 45.0% | |
| GAAAGGAAAGAAGAAACGGC+TGG | - | chr4_1:16951105-16951124 | None:intergenic | 45.0% | |
| GGGTATGTTAAAGGTGGACA+TGG | - | chr4_1:16951129-16951148 | None:intergenic | 45.0% | |
| TGTCCACCTTTAACATACCC+TGG | + | chr4_1:16951129-16951148 | Msa0537890:intron | 45.0% | |
| TCACCCTTGATTACTGCTTG+AGG | - | chr4_1:16951269-16951288 | None:intergenic | 45.0% | |
| TGCTATTCAGATTCCTGAGG+AGG | + | chr4_1:16951295-16951314 | Msa0537890:intron | 45.0% | |
| ! | TGGTAGAGTGATTTGGCCAA+AGG | + | chr4_1:16951358-16951377 | Msa0537890:intron | 45.0% |
| ! | GGTAGAGTGATTTGGCCAAA+GGG | + | chr4_1:16951359-16951378 | Msa0537890:intron | 45.0% |
| ! | TTTAAGGCAACGACTGTGAG+AGG | - | chr4_1:16951392-16951411 | None:intergenic | 45.0% |
| TCTCTAGGCAGAGGATTCTT+CGG | + | chr4_1:16951461-16951480 | Msa0537890:intron | 45.0% | |
| !!! | CGGATTCACTTTTTCAACCC+TGG | + | chr4_1:16951481-16951500 | Msa0537890:intron | 45.0% |
| AACCCTGGAAGATGTCAGAA+AGG | + | chr4_1:16951496-16951515 | Msa0537890:intron | 45.0% | |
| AGGTAAGATCCTTCGCTTCT+TGG | + | chr4_1:16951516-16951535 | Msa0537890:intron | 45.0% | |
| CTAACTCTTCAGCTCAAGTC+TGG | + | chr4_1:16951603-16951622 | Msa0537890:intron | 45.0% | |
| CAAGTCTGGGTAAGAATCCA+TGG | + | chr4_1:16951617-16951636 | Msa0537890:intron | 45.0% | |
| CTGGGTAAGAATCCATGGTT+TGG | + | chr4_1:16951622-16951641 | Msa0537890:intron | 45.0% | |
| !! | CACGTTTGGTCAGTTTGCTA+GGG | + | chr4_1:16951745-16951764 | Msa0537890:intron | 45.0% |
| GAGCTTGTGTCTTAGGGTTT+GGG | - | chr4_1:16951792-16951811 | None:intergenic | 45.0% | |
| AAGCTCCTGGTGGAAAGAAA+AGG | + | chr4_1:16951806-16951825 | Msa0537890:intron | 45.0% | |
| !! | CAGGTTGATTGGTCATCATG+TGG | + | chr4_1:16951886-16951905 | Msa0537890:intron | 45.0% |
| TGCTGATGCCTTACAATCAG+TGG | + | chr4_1:16952117-16952136 | Msa0537890:CDS | 45.0% | |
| TGGCTCTTGAAAACTTCTGC+AGG | - | chr4_1:16952166-16952185 | None:intergenic | 45.0% | |
| GAGCCAAGATGCTCATTTAG+AGG | + | chr4_1:16952180-16952199 | Msa0537890:CDS | 45.0% | |
| CTGCCTCTAAATGAGCATCT+TGG | - | chr4_1:16952186-16952205 | None:intergenic | 45.0% | |
| GATATCGCGAGTAATCTGGT+AGG | - | chr4_1:16950538-16950557 | None:intergenic | 45.0% | |
| CTGGAAATTGAAGGCGGTTA+AGG | - | chr4_1:16951086-16951105 | None:intergenic | 45.0% | |
| AAACGGCTGGAAATTGAAGG+CGG | - | chr4_1:16951092-16951111 | None:intergenic | 45.0% | |
| GAAAGGAAAGAAGAAACGGC+TGG | - | chr4_1:16951105-16951124 | None:intergenic | 45.0% | |
| GGGTATGTTAAAGGTGGACA+TGG | - | chr4_1:16951129-16951148 | None:intergenic | 45.0% | |
| TGTCCACCTTTAACATACCC+TGG | + | chr4_1:16951129-16951148 | Msa0537890:intron | 45.0% | |
| TCACCCTTGATTACTGCTTG+AGG | - | chr4_1:16951269-16951288 | None:intergenic | 45.0% | |
| TGCTATTCAGATTCCTGAGG+AGG | + | chr4_1:16951295-16951314 | Msa0537890:intron | 45.0% | |
| ! | TGGTAGAGTGATTTGGCCAA+AGG | + | chr4_1:16951358-16951377 | Msa0537890:intron | 45.0% |
| ! | GGTAGAGTGATTTGGCCAAA+GGG | + | chr4_1:16951359-16951378 | Msa0537890:intron | 45.0% |
| ! | TTTAAGGCAACGACTGTGAG+AGG | - | chr4_1:16951392-16951411 | None:intergenic | 45.0% |
| TCTCTAGGCAGAGGATTCTT+CGG | + | chr4_1:16951461-16951480 | Msa0537890:intron | 45.0% | |
| !!! | CGGATTCACTTTTTCAACCC+TGG | + | chr4_1:16951481-16951500 | Msa0537890:intron | 45.0% |
| AACCCTGGAAGATGTCAGAA+AGG | + | chr4_1:16951496-16951515 | Msa0537890:intron | 45.0% | |
| AGGTAAGATCCTTCGCTTCT+TGG | + | chr4_1:16951516-16951535 | Msa0537890:intron | 45.0% | |
| CTAACTCTTCAGCTCAAGTC+TGG | + | chr4_1:16951603-16951622 | Msa0537890:intron | 45.0% | |
| CAAGTCTGGGTAAGAATCCA+TGG | + | chr4_1:16951617-16951636 | Msa0537890:intron | 45.0% | |
| CTGGGTAAGAATCCATGGTT+TGG | + | chr4_1:16951622-16951641 | Msa0537890:intron | 45.0% | |
| !! | CACGTTTGGTCAGTTTGCTA+GGG | + | chr4_1:16951745-16951764 | Msa0537890:intron | 45.0% |
| GAGCTTGTGTCTTAGGGTTT+GGG | - | chr4_1:16951792-16951811 | None:intergenic | 45.0% | |
| AAGCTCCTGGTGGAAAGAAA+AGG | + | chr4_1:16951806-16951825 | Msa0537890:intron | 45.0% | |
| !! | CAGGTTGATTGGTCATCATG+TGG | + | chr4_1:16951886-16951905 | Msa0537890:intron | 45.0% |
| TGCTGATGCCTTACAATCAG+TGG | + | chr4_1:16952117-16952136 | Msa0537890:CDS | 45.0% | |
| TGGCTCTTGAAAACTTCTGC+AGG | - | chr4_1:16952166-16952185 | None:intergenic | 45.0% | |
| GAGCCAAGATGCTCATTTAG+AGG | + | chr4_1:16952180-16952199 | Msa0537890:CDS | 45.0% | |
| CTGCCTCTAAATGAGCATCT+TGG | - | chr4_1:16952186-16952205 | None:intergenic | 45.0% | |
| !! | AAAATAAAAATATAATCTAT+AGG | + | chr4_1:16950703-16950722 | Msa0537890:intron | 5.0% |
| !! | AAAATAAAAATATAATCTAT+AGG | + | chr4_1:16950703-16950722 | Msa0537890:intron | 5.0% |
| ! | GGTCGTTGCATGTCTCGTTT+TGG | + | chr4_1:16950242-16950261 | Msa0537890:CDS | 50.0% |
| GCTTGAGGAAGTTGGGATTG+AGG | - | chr4_1:16951254-16951273 | None:intergenic | 50.0% | |
| GGAGGAATACTCAGCTGGTA+TGG | + | chr4_1:16951313-16951332 | Msa0537890:intron | 50.0% | |
| CCTAGAGACATGATTCCCCA+TGG | - | chr4_1:16951449-16951468 | None:intergenic | 50.0% | |
| CCATGGGGAATCATGTCTCT+AGG | + | chr4_1:16951446-16951465 | Msa0537890:intron | 50.0% | |
| GGAATCATGTCTCTAGGCAG+AGG | + | chr4_1:16951452-16951471 | Msa0537890:intron | 50.0% | |
| TTCTCAATCGCTAGTGGCCT+AGG | + | chr4_1:16951674-16951693 | Msa0537890:intron | 50.0% | |
| ! | GCACGTTTGGTCAGTTTGCT+AGG | + | chr4_1:16951744-16951763 | Msa0537890:intron | 50.0% |
| !! | TGGTCAGTTTGCTAGGGTTC+TGG | + | chr4_1:16951751-16951770 | Msa0537890:intron | 50.0% |
| GGAGCTTGTGTCTTAGGGTT+TGG | - | chr4_1:16951793-16951812 | None:intergenic | 50.0% | |
| AACCCTAAGACACAAGCTCC+TGG | + | chr4_1:16951793-16951812 | Msa0537890:intron | 50.0% | |
| CACCAGGAGCTTGTGTCTTA+GGG | - | chr4_1:16951798-16951817 | None:intergenic | 50.0% | |
| GCAGGTTCAGGAACCTTGTT+TGG | - | chr4_1:16952148-16952167 | None:intergenic | 50.0% | |
| ! | GGTCGTTGCATGTCTCGTTT+TGG | + | chr4_1:16950242-16950261 | Msa0537890:CDS | 50.0% |
| GCTTGAGGAAGTTGGGATTG+AGG | - | chr4_1:16951254-16951273 | None:intergenic | 50.0% | |
| GGAGGAATACTCAGCTGGTA+TGG | + | chr4_1:16951313-16951332 | Msa0537890:intron | 50.0% | |
| CCTAGAGACATGATTCCCCA+TGG | - | chr4_1:16951449-16951468 | None:intergenic | 50.0% | |
| CCATGGGGAATCATGTCTCT+AGG | + | chr4_1:16951446-16951465 | Msa0537890:intron | 50.0% | |
| GGAATCATGTCTCTAGGCAG+AGG | + | chr4_1:16951452-16951471 | Msa0537890:intron | 50.0% | |
| TTCTCAATCGCTAGTGGCCT+AGG | + | chr4_1:16951674-16951693 | Msa0537890:intron | 50.0% | |
| ! | GCACGTTTGGTCAGTTTGCT+AGG | + | chr4_1:16951744-16951763 | Msa0537890:intron | 50.0% |
| !! | TGGTCAGTTTGCTAGGGTTC+TGG | + | chr4_1:16951751-16951770 | Msa0537890:intron | 50.0% |
| GGAGCTTGTGTCTTAGGGTT+TGG | - | chr4_1:16951793-16951812 | None:intergenic | 50.0% | |
| AACCCTAAGACACAAGCTCC+TGG | + | chr4_1:16951793-16951812 | Msa0537890:intron | 50.0% | |
| CACCAGGAGCTTGTGTCTTA+GGG | - | chr4_1:16951798-16951817 | None:intergenic | 50.0% | |
| GCAGGTTCAGGAACCTTGTT+TGG | - | chr4_1:16952148-16952167 | None:intergenic | 50.0% | |
| CCAGCTGAGTATTCCTCCTC+AGG | - | chr4_1:16951311-16951330 | None:intergenic | 55.0% | |
| CCTGAGGAGGAATACTCAGC+TGG | + | chr4_1:16951308-16951327 | Msa0537890:intron | 55.0% | |
| CCACCAGGAGCTTGTGTCTT+AGG | - | chr4_1:16951799-16951818 | None:intergenic | 55.0% | |
| CCTAAGACACAAGCTCCTGG+TGG | + | chr4_1:16951796-16951815 | Msa0537890:intron | 55.0% | |
| CCAGCTGAGTATTCCTCCTC+AGG | - | chr4_1:16951311-16951330 | None:intergenic | 55.0% | |
| CCTGAGGAGGAATACTCAGC+TGG | + | chr4_1:16951308-16951327 | Msa0537890:intron | 55.0% | |
| CCACCAGGAGCTTGTGTCTT+AGG | - | chr4_1:16951799-16951818 | None:intergenic | 55.0% | |
| CCTAAGACACAAGCTCCTGG+TGG | + | chr4_1:16951796-16951815 | Msa0537890:intron | 55.0% | |
| ! | GTGAGAGGCGTGGAACCCTT+TGG | - | chr4_1:16951377-16951396 | None:intergenic | 60.0% |
| CCAAACGTGCGCTCTGCCAT+AGG | - | chr4_1:16951734-16951753 | None:intergenic | 60.0% | |
| CCTATGGCAGAGCGCACGTT+TGG | + | chr4_1:16951731-16951750 | Msa0537890:intron | 60.0% | |
| ! | GTGAGAGGCGTGGAACCCTT+TGG | - | chr4_1:16951377-16951396 | None:intergenic | 60.0% |
| CCAAACGTGCGCTCTGCCAT+AGG | - | chr4_1:16951734-16951753 | None:intergenic | 60.0% | |
| CCTATGGCAGAGCGCACGTT+TGG | + | chr4_1:16951731-16951750 | Msa0537890:intron | 60.0% | |
| GGCAACGACTGTGAGAGGCG+TGG | - | chr4_1:16951387-16951406 | None:intergenic | 65.0% | |
| GGCAACGACTGTGAGAGGCG+TGG | - | chr4_1:16951387-16951406 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16950237 | 16952276 | 16950237 | ID=Msa0537890;Name=Msa0537890 |
| chr4_1 | mRNA | 16950237 | 16952276 | 16950237 | ID=Msa0537890-mRNA-1;Parent=Msa0537890;Name=Msa0537890-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0|1|1|0.5|2|0|208 |
| chr4_1 | exon | 16950237 | 16950568 | 16950237 | ID=Msa0537890-mRNA-1:exon:5000;Parent=Msa0537890-mRNA-1 |
| chr4_1 | exon | 16951985 | 16952276 | 16951985 | ID=Msa0537890-mRNA-1:exon:5001;Parent=Msa0537890-mRNA-1 |
| chr4_1 | CDS | 16950237 | 16950568 | 16950237 | ID=Msa0537890-mRNA-1:cds;Parent=Msa0537890-mRNA-1 |
| chr4_1 | CDS | 16951985 | 16952276 | 16951985 | ID=Msa0537890-mRNA-1:cds;Parent=Msa0537890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
