AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123900 MtrunA17_Chr1g0184761 95.652 138 5 1 1 138 1 137 2.74e-91 260
Msa0123900 MtrunA17_Chr7g0260701 75.362 138 32 1 1 138 1 136 2.27e-65 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123900 AT2G30570.1 62.590 139 45 3 1 138 1 133 1.14e-46 148

Find 51 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGTGTTCGGTCTTATC+TGG 0.197833 1_3:+51233788 Msa0123900:CDS
GTTTCATCCTCTCCTGTTCT+TGG 0.207350 1_3:+51232874 Msa0123900:CDS
ATTCATTTCAAGCAATTTAA+AGG 0.218602 1_3:-51233867 None:intergenic
TCCACCAATGCCATGGCTGC+TGG 0.247914 1_3:-51233694 None:intergenic
GGACTCAGCAACAACCTTCT+TGG 0.302937 1_3:+51233754 Msa0123900:CDS
CTTCCTACCTTAGCCATTGT+TGG 0.362196 1_3:-51233559 None:intergenic
TTCATTTCAAGCAATTTAAA+GGG 0.388432 1_3:-51233866 None:intergenic
TAAGACCGAACACACCAAAA+AGG 0.399989 1_3:-51233783 None:intergenic
TTAGTAAGTGTGGATGATTA+TGG 0.401065 1_3:-51232763 None:intergenic
CCACCAATGCCATGGCTGCT+GGG 0.401839 1_3:-51233693 None:intergenic
ACTCCACTTAAACTAGTATC+TGG 0.403048 1_3:+51232698 Msa0123900:five_prime_UTR
CCCAGCAGCCATGGCATTGG+TGG 0.403670 1_3:+51233693 Msa0123900:CDS
AGGAAGAGTGAGGTGTTCAA+TGG 0.414580 1_3:+51233576 Msa0123900:CDS
GAAGGAACCGGGCTTCCGTT+TGG 0.431982 1_3:+51233733 Msa0123900:CDS
CTTGAAGAGGATGAAGAGTC+TGG 0.434178 1_3:+51233838 Msa0123900:CDS
AGAATGAGCACTGAAGGAAC+CGG 0.435090 1_3:+51233721 Msa0123900:CDS
TGGTGTGTTCGGTCTTATCT+GGG 0.435857 1_3:+51233789 Msa0123900:CDS
AAATTGCTTGAAATGAATCA+TGG 0.437775 1_3:+51233872 Msa0123900:exon
ACAAACAACATACCAAGAAC+AGG 0.443082 1_3:-51232886 None:intergenic
TTGCTTTCACTCACAGAAGA+AGG 0.463615 1_3:-51233610 None:intergenic
TCAGCAACAACCTTCTTGGT+TGG 0.473672 1_3:+51233758 Msa0123900:CDS
TCTCCAGATACTAGTTTAAG+TGG 0.478757 1_3:-51232701 None:intergenic
AAGAGTGAGGTGTTCAATGG+AGG 0.482197 1_3:+51233579 Msa0123900:CDS
AGTGAAAGCAACTCGAACAT+TGG 0.485913 1_3:+51233622 Msa0123900:CDS
GATACTAGTTTAAGTGGAGT+TGG 0.496075 1_3:-51232695 None:intergenic
AGCAACTCGAACATTGGAAT+GGG 0.500319 1_3:+51233628 Msa0123900:CDS
TAAGAGCTTAAGAAAAGAAG+AGG 0.505449 1_3:-51233971 None:intergenic
AGAGTGAGGTGTTCAATGGA+GGG 0.518257 1_3:+51233580 Msa0123900:CDS
AAGCCCAGCAGCCATGGCAT+TGG 0.535185 1_3:+51233690 Msa0123900:CDS
GCTGAGTCCAAACGGAAGCC+CGG 0.540538 1_3:-51233740 None:intergenic
GATAGATTGAAGCTCATGGT+TGG 0.546901 1_3:-51232623 None:intergenic
GAGACAGAAGAGAAGTAGCT+TGG 0.552653 1_3:+51232720 Msa0123900:five_prime_UTR
TCTTTCATCCACCAATGCCA+TGG 0.558482 1_3:-51233701 None:intergenic
AGGTTGTTGCTGAGTCCAAA+CGG 0.559641 1_3:-51233748 None:intergenic
AAGCAACTCGAACATTGGAA+TGG 0.561588 1_3:+51233627 Msa0123900:CDS
CAAGGATAGATTGAAGCTCA+TGG 0.568609 1_3:-51232627 None:intergenic
AGGATTGCCAACAATGGCTA+AGG 0.574193 1_3:+51233552 Msa0123900:intron
GATGAAAGAATGAGCACTGA+AGG 0.583467 1_3:+51233715 Msa0123900:CDS
AGTCCATGCACCACAAAACA+AGG 0.587249 1_3:-51232645 None:intergenic
GAATGAGCACTGAAGGAACC+GGG 0.588005 1_3:+51233722 Msa0123900:CDS
CTACGCCTCGAGTCTTGAAG+AGG 0.588236 1_3:+51233825 Msa0123900:CDS
TATGTCAAGCCCAGCAGCCA+TGG 0.588442 1_3:+51233684 Msa0123900:CDS
AGTTGTAGTGGTAGCTGAGA+TGG 0.594313 1_3:-51232806 None:intergenic
TTATTCAGGATTGCCAACAA+TGG 0.611540 1_3:+51233546 Msa0123900:intron
TTCATCCTCTTCAAGACTCG+AGG 0.612569 1_3:-51233830 None:intergenic
TTGCCAACAATGGCTAAGGT+AGG 0.622185 1_3:+51233556 Msa0123900:CDS
GGTGATCGATGCAGTTGTAG+TGG 0.624319 1_3:-51232818 None:intergenic
AATTAATAATATCAGTGCAG+AGG 0.638910 1_3:-51232669 None:intergenic
CAACATACCAAGAACAGGAG+AGG 0.645270 1_3:-51232881 None:intergenic
TGGCTAAGGTAGGAAGAGTG+AGG 0.686087 1_3:+51233566 Msa0123900:CDS
GGAGAGGATGAAACTGCAAG+AGG 0.693611 1_3:-51232865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAAACAAAAATTAAAA+TGG + chr1_3:51232780-51232799 Msa0123900:exon 10.0%
!! TACTAAAACAAAAATTAAAA+TGG + chr1_3:51232780-51232799 Msa0123900:exon 10.0%
!!! AATATTTAGGATGAAAATTA+AGG - chr1_3:51232916-51232935 None:intergenic 15.0%
!!! AGATATATATGTTTTAAGAT+TGG + chr1_3:51233039-51233058 Msa0123900:intron 15.0%
!!! TTATTTCATAACTTTTATTG+AGG + chr1_3:51233284-51233303 Msa0123900:intron 15.0%
!!! AATATTTAGGATGAAAATTA+AGG - chr1_3:51232916-51232935 None:intergenic 15.0%
!!! AGATATATATGTTTTAAGAT+TGG + chr1_3:51233039-51233058 Msa0123900:intron 15.0%
!!! TTATTTCATAACTTTTATTG+AGG + chr1_3:51233284-51233303 Msa0123900:intron 15.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_3:51232776-51232795 None:intergenic 20.0%
!! TATCATGCTATTCAATATTT+AGG - chr1_3:51232929-51232948 None:intergenic 20.0%
!!! TTTTTCATCATTACAAAATC+GGG - chr1_3:51233230-51233249 None:intergenic 20.0%
!!! GTTTTTCATCATTACAAAAT+CGG - chr1_3:51233231-51233250 None:intergenic 20.0%
!!! TATTTGTCGATTTTTTTTCT+CGG + chr1_3:51233251-51233270 Msa0123900:intron 20.0%
!!! ATTTGAACCATTTTATACTA+TGG + chr1_3:51233326-51233345 Msa0123900:intron 20.0%
!!! AACATTCAATCATTTTATTC+AGG + chr1_3:51233532-51233551 Msa0123900:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_3:51233869-51233888 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_3:51233870-51233889 None:intergenic 20.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_3:51232776-51232795 None:intergenic 20.0%
!! TATCATGCTATTCAATATTT+AGG - chr1_3:51232929-51232948 None:intergenic 20.0%
!!! TTTTTCATCATTACAAAATC+GGG - chr1_3:51233230-51233249 None:intergenic 20.0%
!!! GTTTTTCATCATTACAAAAT+CGG - chr1_3:51233231-51233250 None:intergenic 20.0%
!!! TATTTGTCGATTTTTTTTCT+CGG + chr1_3:51233251-51233270 Msa0123900:intron 20.0%
!!! ATTTGAACCATTTTATACTA+TGG + chr1_3:51233326-51233345 Msa0123900:intron 20.0%
!!! AACATTCAATCATTTTATTC+AGG + chr1_3:51233532-51233551 Msa0123900:intron 20.0%
!! TTCATTTCAAGCAATTTAAA+GGG - chr1_3:51233869-51233888 None:intergenic 20.0%
!! ATTCATTTCAAGCAATTTAA+AGG - chr1_3:51233870-51233889 None:intergenic 20.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_3:51232672-51232691 None:intergenic 25.0%
!! TTCTCTAGAAAACTCATTAT+TGG - chr1_3:51232995-51233014 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_3:51233012-51233031 Msa0123900:intron 25.0%
! GATAAATATGAGAGACTATT+GGG - chr1_3:51233067-51233086 None:intergenic 25.0%
! TGATAAATATGAGAGACTAT+TGG - chr1_3:51233068-51233087 None:intergenic 25.0%
!!! GTTTTTGATTTTGTCAAACT+CGG + chr1_3:51233157-51233176 Msa0123900:intron 25.0%
!!! ATTTGTCGATTTTTTTTCTC+GGG + chr1_3:51233252-51233271 Msa0123900:intron 25.0%
!!! TTTACTCCATTTTTAATCGA+CGG + chr1_3:51233481-51233500 Msa0123900:intron 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_3:51233872-51233891 Msa0123900:exon 25.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_3:51232672-51232691 None:intergenic 25.0%
!! TTCTCTAGAAAACTCATTAT+TGG - chr1_3:51232995-51233014 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_3:51233012-51233031 Msa0123900:intron 25.0%
! GATAAATATGAGAGACTATT+GGG - chr1_3:51233067-51233086 None:intergenic 25.0%
! TGATAAATATGAGAGACTAT+TGG - chr1_3:51233068-51233087 None:intergenic 25.0%
!!! GTTTTTGATTTTGTCAAACT+CGG + chr1_3:51233157-51233176 Msa0123900:intron 25.0%
!!! ATTTGTCGATTTTTTTTCTC+GGG + chr1_3:51233252-51233271 Msa0123900:intron 25.0%
!!! TTTACTCCATTTTTAATCGA+CGG + chr1_3:51233481-51233500 Msa0123900:intron 25.0%
! AAATTGCTTGAAATGAATCA+TGG + chr1_3:51233872-51233891 Msa0123900:exon 25.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_3:51232635-51232654 Msa0123900:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_3:51232766-51232785 None:intergenic 30.0%
TTAGTGCATGTTTGATGTTA+CGG + chr1_3:51233104-51233123 Msa0123900:intron 30.0%
CAAAATCAAAAACCACATGT+TGG - chr1_3:51233150-51233169 None:intergenic 30.0%
!!! TTTGTCGATTTTTTTTCTCG+GGG + chr1_3:51233253-51233272 Msa0123900:intron 30.0%
AATCGAGCCATAGTATAAAA+TGG - chr1_3:51233336-51233355 None:intergenic 30.0%
! ATACTATGGCTCGATTATTT+TGG + chr1_3:51233340-51233359 Msa0123900:intron 30.0%
!!! TTATTTTGGCAATTCGATCA+CGG + chr1_3:51233354-51233373 Msa0123900:intron 30.0%
TAAGAGCTTAAGAAAAGAAG+AGG - chr1_3:51233974-51233993 None:intergenic 30.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_3:51232635-51232654 Msa0123900:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_3:51232766-51232785 None:intergenic 30.0%
TTAGTGCATGTTTGATGTTA+CGG + chr1_3:51233104-51233123 Msa0123900:intron 30.0%
CAAAATCAAAAACCACATGT+TGG - chr1_3:51233150-51233169 None:intergenic 30.0%
!!! TTTGTCGATTTTTTTTCTCG+GGG + chr1_3:51233253-51233272 Msa0123900:intron 30.0%
AATCGAGCCATAGTATAAAA+TGG - chr1_3:51233336-51233355 None:intergenic 30.0%
! ATACTATGGCTCGATTATTT+TGG + chr1_3:51233340-51233359 Msa0123900:intron 30.0%
!!! TTATTTTGGCAATTCGATCA+CGG + chr1_3:51233354-51233373 Msa0123900:intron 30.0%
TAAGAGCTTAAGAAAAGAAG+AGG - chr1_3:51233974-51233993 None:intergenic 30.0%
! GATACTAGTTTAAGTGGAGT+TGG - chr1_3:51232698-51232717 None:intergenic 35.0%
ACTCCACTTAAACTAGTATC+TGG + chr1_3:51232698-51232717 Msa0123900:five_prime_UTR 35.0%
! TCTCCAGATACTAGTTTAAG+TGG - chr1_3:51232704-51232723 None:intergenic 35.0%
ACAAACAACATACCAAGAAC+AGG - chr1_3:51232889-51232908 None:intergenic 35.0%
ATTGTTGAAGATCCAACATG+TGG + chr1_3:51233135-51233154 Msa0123900:intron 35.0%
TCATCATTACAAAATCGGGA+GGG - chr1_3:51233226-51233245 None:intergenic 35.0%
TTCATCATTACAAAATCGGG+AGG - chr1_3:51233227-51233246 None:intergenic 35.0%
! AAACCTCCGTCGATTAAAAA+TGG - chr1_3:51233490-51233509 None:intergenic 35.0%
! ATTTTTAATCGACGGAGGTT+TGG + chr1_3:51233489-51233508 Msa0123900:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_3:51233546-51233565 Msa0123900:intron 35.0%
! GATACTAGTTTAAGTGGAGT+TGG - chr1_3:51232698-51232717 None:intergenic 35.0%
ACTCCACTTAAACTAGTATC+TGG + chr1_3:51232698-51232717 Msa0123900:five_prime_UTR 35.0%
! TCTCCAGATACTAGTTTAAG+TGG - chr1_3:51232704-51232723 None:intergenic 35.0%
ACAAACAACATACCAAGAAC+AGG - chr1_3:51232889-51232908 None:intergenic 35.0%
ATTGTTGAAGATCCAACATG+TGG + chr1_3:51233135-51233154 Msa0123900:intron 35.0%
TCATCATTACAAAATCGGGA+GGG - chr1_3:51233226-51233245 None:intergenic 35.0%
TTCATCATTACAAAATCGGG+AGG - chr1_3:51233227-51233246 None:intergenic 35.0%
! AAACCTCCGTCGATTAAAAA+TGG - chr1_3:51233490-51233509 None:intergenic 35.0%
! ATTTTTAATCGACGGAGGTT+TGG + chr1_3:51233489-51233508 Msa0123900:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_3:51233546-51233565 Msa0123900:intron 35.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_3:51232626-51232645 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_3:51232630-51232649 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_3:51232642-51232661 Msa0123900:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_3:51232843-51232862 None:intergenic 40.0%
GTCCTGATTCAAGCAATTGA+AGG + chr1_3:51233381-51233400 Msa0123900:intron 40.0%
CACCTTCAATTGCTTGAATC+AGG - chr1_3:51233386-51233405 None:intergenic 40.0%
CTGATTCAAGCAATTGAAGG+TGG + chr1_3:51233384-51233403 Msa0123900:intron 40.0%
TGTCTCGCTCGATTGATATT+TGG + chr1_3:51233424-51233443 Msa0123900:intron 40.0%
CGCTCGATTGATATTTGGTT+CGG + chr1_3:51233429-51233448 Msa0123900:intron 40.0%
!! ACTCCATTTTTAATCGACGG+AGG + chr1_3:51233484-51233503 Msa0123900:intron 40.0%
TTGCTTTCACTCACAGAAGA+AGG - chr1_3:51233613-51233632 None:intergenic 40.0%
AGTGAAAGCAACTCGAACAT+TGG + chr1_3:51233622-51233641 Msa0123900:CDS 40.0%
AAGCAACTCGAACATTGGAA+TGG + chr1_3:51233627-51233646 Msa0123900:CDS 40.0%
AGCAACTCGAACATTGGAAT+GGG + chr1_3:51233628-51233647 Msa0123900:CDS 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_3:51233715-51233734 Msa0123900:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_3:51233771-51233790 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_3:51233769-51233788 Msa0123900:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_3:51233778-51233797 Msa0123900:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_3:51233786-51233805 None:intergenic 40.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_3:51232626-51232645 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_3:51232630-51232649 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_3:51232642-51232661 Msa0123900:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_3:51232843-51232862 None:intergenic 40.0%
GTCCTGATTCAAGCAATTGA+AGG + chr1_3:51233381-51233400 Msa0123900:intron 40.0%
CACCTTCAATTGCTTGAATC+AGG - chr1_3:51233386-51233405 None:intergenic 40.0%
CTGATTCAAGCAATTGAAGG+TGG + chr1_3:51233384-51233403 Msa0123900:intron 40.0%
TGTCTCGCTCGATTGATATT+TGG + chr1_3:51233424-51233443 Msa0123900:intron 40.0%
CGCTCGATTGATATTTGGTT+CGG + chr1_3:51233429-51233448 Msa0123900:intron 40.0%
!! ACTCCATTTTTAATCGACGG+AGG + chr1_3:51233484-51233503 Msa0123900:intron 40.0%
TTGCTTTCACTCACAGAAGA+AGG - chr1_3:51233613-51233632 None:intergenic 40.0%
AGTGAAAGCAACTCGAACAT+TGG + chr1_3:51233622-51233641 Msa0123900:CDS 40.0%
AAGCAACTCGAACATTGGAA+TGG + chr1_3:51233627-51233646 Msa0123900:CDS 40.0%
AGCAACTCGAACATTGGAAT+GGG + chr1_3:51233628-51233647 Msa0123900:CDS 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_3:51233715-51233734 Msa0123900:CDS 40.0%
CAAAAAGGATCCAACCAAGA+AGG - chr1_3:51233771-51233790 None:intergenic 40.0%
! CTTCTTGGTTGGATCCTTTT+TGG + chr1_3:51233769-51233788 Msa0123900:CDS 40.0%
!! TGGATCCTTTTTGGTGTGTT+CGG + chr1_3:51233778-51233797 Msa0123900:CDS 40.0%
TAAGACCGAACACACCAAAA+AGG - chr1_3:51233786-51233805 None:intergenic 40.0%
AGTCCATGCACCACAAAACA+AGG - chr1_3:51232648-51232667 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_3:51232720-51232739 Msa0123900:five_prime_UTR 45.0%
AGTTGTAGTGGTAGCTGAGA+TGG - chr1_3:51232809-51232828 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_3:51232842-51232861 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_3:51232874-51232893 Msa0123900:CDS 45.0%
CAACATACCAAGAACAGGAG+AGG - chr1_3:51232884-51232903 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_3:51233552-51233571 Msa0123900:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_3:51233556-51233575 Msa0123900:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_3:51233562-51233581 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_3:51233576-51233595 Msa0123900:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_3:51233579-51233598 Msa0123900:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_3:51233580-51233599 Msa0123900:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_3:51233704-51233723 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_3:51233721-51233740 Msa0123900:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+CGG - chr1_3:51233751-51233770 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_3:51233758-51233777 Msa0123900:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_3:51233788-51233807 Msa0123900:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_3:51233789-51233808 Msa0123900:CDS 45.0%
TTCATCCTCTTCAAGACTCG+AGG - chr1_3:51233833-51233852 None:intergenic 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_3:51233838-51233857 Msa0123900:CDS 45.0%
AGTCCATGCACCACAAAACA+AGG - chr1_3:51232648-51232667 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_3:51232720-51232739 Msa0123900:five_prime_UTR 45.0%
AGTTGTAGTGGTAGCTGAGA+TGG - chr1_3:51232809-51232828 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_3:51232842-51232861 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_3:51232874-51232893 Msa0123900:CDS 45.0%
CAACATACCAAGAACAGGAG+AGG - chr1_3:51232884-51232903 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_3:51233552-51233571 Msa0123900:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_3:51233556-51233575 Msa0123900:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_3:51233562-51233581 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_3:51233576-51233595 Msa0123900:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_3:51233579-51233598 Msa0123900:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_3:51233580-51233599 Msa0123900:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_3:51233704-51233723 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_3:51233721-51233740 Msa0123900:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+CGG - chr1_3:51233751-51233770 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGT+TGG + chr1_3:51233758-51233777 Msa0123900:CDS 45.0%
! TTGGTGTGTTCGGTCTTATC+TGG + chr1_3:51233788-51233807 Msa0123900:CDS 45.0%
! TGGTGTGTTCGGTCTTATCT+GGG + chr1_3:51233789-51233808 Msa0123900:CDS 45.0%
TTCATCCTCTTCAAGACTCG+AGG - chr1_3:51233833-51233852 None:intergenic 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_3:51233838-51233857 Msa0123900:CDS 45.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_3:51232821-51232840 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_3:51232868-51232887 None:intergenic 50.0%
CAAAATCGGGAGGGTAGTCT+TGG - chr1_3:51233217-51233236 None:intergenic 50.0%
CGACGGAGGTTTGGATGATT+TGG + chr1_3:51233498-51233517 Msa0123900:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_3:51233566-51233585 Msa0123900:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_3:51233722-51233741 Msa0123900:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_3:51233754-51233773 Msa0123900:CDS 50.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_3:51232821-51232840 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_3:51232868-51232887 None:intergenic 50.0%
CAAAATCGGGAGGGTAGTCT+TGG - chr1_3:51233217-51233236 None:intergenic 50.0%
CGACGGAGGTTTGGATGATT+TGG + chr1_3:51233498-51233517 Msa0123900:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_3:51233566-51233585 Msa0123900:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_3:51233722-51233741 Msa0123900:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_3:51233754-51233773 Msa0123900:CDS 50.0%
TATGTCAAGCCCAGCAGCCA+TGG + chr1_3:51233684-51233703 Msa0123900:CDS 55.0%
CTACGCCTCGAGTCTTGAAG+AGG + chr1_3:51233825-51233844 Msa0123900:CDS 55.0%
TATGTCAAGCCCAGCAGCCA+TGG + chr1_3:51233684-51233703 Msa0123900:CDS 55.0%
CTACGCCTCGAGTCTTGAAG+AGG + chr1_3:51233825-51233844 Msa0123900:CDS 55.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_3:51233690-51233709 Msa0123900:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_3:51233696-51233715 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_3:51233697-51233716 None:intergenic 60.0%
GAAGGAACCGGGCTTCCGTT+TGG + chr1_3:51233733-51233752 Msa0123900:CDS 60.0%
GCTGAGTCCAAACGGAAGCC+CGG - chr1_3:51233743-51233762 None:intergenic 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_3:51233690-51233709 Msa0123900:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_3:51233696-51233715 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_3:51233697-51233716 None:intergenic 60.0%
GAAGGAACCGGGCTTCCGTT+TGG + chr1_3:51233733-51233752 Msa0123900:CDS 60.0%
GCTGAGTCCAAACGGAAGCC+CGG - chr1_3:51233743-51233762 None:intergenic 60.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_3:51233693-51233712 Msa0123900:CDS 65.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_3:51233693-51233712 Msa0123900:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51232617 51234077 51232617 ID=Msa0123900;Name=Msa0123900
chr1_3 mRNA 51232617 51234077 51232617 ID=Msa0123900-mRNA-1;Parent=Msa0123900;Name=Msa0123900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|1|1|2|204|138
chr1_3 exon 51232617 51232895 51232617 ID=Msa0123900-mRNA-1:exon:15645;Parent=Msa0123900-mRNA-1
chr1_3 exon 51233554 51234077 51233554 ID=Msa0123900-mRNA-1:exon:15646;Parent=Msa0123900-mRNA-1
chr1_3 five_prime_UTR 51232617 51232798 51232617 ID=Msa0123900-mRNA-1:five_prime_utr;Parent=Msa0123900-mRNA-1
chr1_3 CDS 51232799 51232895 51232799 ID=Msa0123900-mRNA-1:cds;Parent=Msa0123900-mRNA-1
chr1_3 CDS 51233554 51233873 51233554 ID=Msa0123900-mRNA-1:cds;Parent=Msa0123900-mRNA-1
chr1_3 three_prime_UTR 51233874 51234077 51233874 ID=Msa0123900-mRNA-1:three_prime_utr;Parent=Msa0123900-mRNA-1
Gene Sequence

>Msa0123900

ATGGCAACCATCTCAGCTACCACTACAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTAGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCAACCTTCTTCTGTGAGTGAAAGCAACTCGAACATTGGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCTATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGCACTGAAGGAACCGGGCTTCCGTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTCGGTCTTATCTGGGCTCTCTACTTTATCTACGCCTCGAGTCTTGAAGAGGATGAAGAGTCTGGATTATCCCTTTAA

Protein sequence

>Msa0123900

MATISATTTTASITRACLAQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKQPSSVSESNSNIGMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL*