AlfalfaGEDB | Msa0380710

M. sativa cultivar zhongmu-4 / Msa0380710

KEGG: K06627
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00134.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380710	XP_013461731.1	94.034	352	21	0	1	352	1	352	0.0	679

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380710	sp\|Q9FMH5\|CCA31_ARATH	55.398	352	143	4	3	351	12	352	2.06e-132	385

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380710	G8A2C7	94.034	352	21	0	1	352	1	352	0.0	679

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015570	Msa0380710	0.831304	1.801190e-55	-8.615850e-47
Msa0018920	Msa0380710	0.813110	3.021945e-51	-8.615850e-47
Msa0019930	Msa0380710	0.806372	8.494165e-50	-8.615850e-47
Msa0020540	Msa0380710	0.833508	5.121757e-56	-8.615850e-47
Msa0067060	Msa0380710	0.828712	7.717092e-55	-8.615850e-47
Msa0068150	Msa0380710	0.814955	1.183586e-51	-8.615850e-47
Msa0112670	Msa0380710	0.818143	2.286533e-52	-8.615850e-47
Msa0115550	Msa0380710	0.811720	6.079057e-51	-8.615850e-47
Msa0125590	Msa0380710	0.813254	2.808825e-51	-8.615850e-47
Msa0140200	Msa0380710	0.880065	7.461818e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380710	MtrunA17_Chr3g0134421	94.034	352	21	0	1	352	1	352	0.0	679
Msa0380710	MtrunA17_Chr3g0134411	68.802	359	105	3	1	352	1	359	5.61e-176	493
Msa0380710	MtrunA17_Chr3g0134401	68.524	359	87	5	1	352	1	340	1.66e-172	483
Msa0380710	MtrunA17_Chr1g0152871	54.023	348	156	2	4	350	14	358	6.05e-123	358
Msa0380710	MtrunA17_Chr3g0134441	51.429	350	147	4	1	349	2	329	6.51e-110	323
Msa0380710	MtrunA17_Chr3g0138431	49.621	264	131	1	79	342	208	469	7.84e-85	265
Msa0380710	MtrunA17_Chr1g0148681	49.049	263	132	1	80	342	152	412	6.80e-83	258
Msa0380710	MtrunA17_Chr3g0125051	45.196	281	150	2	72	350	226	504	1.13e-81	257
Msa0380710	MtrunA17_Chr3g0125041	46.642	268	139	2	84	349	243	508	6.26e-80	253
Msa0380710	MtrunA17_Chr3g0134431	53.175	252	96	4	88	339	13	242	1.30e-79	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0380710	AT5G43080.1	55.398	352	143	4	3	351	12	352	2.09e-133	385
Msa0380710	AT5G43080.2	54.545	352	141	5	3	351	12	347	3.51e-129	374
Msa0380710	AT1G47210.2	52.355	361	158	3	3	351	11	369	2.39e-127	370
Msa0380710	AT1G47230.1	52.355	361	151	4	3	351	11	362	8.54e-126	366
Msa0380710	AT1G47230.2	52.210	362	151	5	3	351	11	363	6.33e-124	361
Msa0380710	AT1G47220.1	56.184	283	124	0	69	351	41	323	1.03e-108	321
Msa0380710	AT1G44110.1	40.909	352	196	4	2	349	114	457	6.83e-83	259
Msa0380710	AT1G80370.1	50.000	266	130	2	84	349	197	459	6.03e-82	257
Msa0380710	AT5G11300.1	50.195	257	126	1	84	340	172	426	1.23e-81	255
Msa0380710	AT5G25380.3	38.642	383	195	5	4	349	56	435	3.66e-80	251

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Find 84 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATCCTAGGAAAAT+AGG	0.271109	3_1:-82654176	None:intergenic
AAATAGGTTGTGTATAAAGT+TGG	0.419997	3_1:-82654160	None:intergenic
AAATATGAGAGGGATACTGG+TGG	0.717057	3_1:+82652624	Msa0380710:CDS
AACATTGAGATTTGGTAAAT+TGG	0.141731	3_1:-82652254	None:intergenic
AACCATATGCACAGAGATCC+AGG	0.460423	3_1:-82654055	None:intergenic
AACCTGGATCTCTGTGCATA+TGG	0.453964	3_1:+82654053	Msa0380710:three_prime_UTR
AAGATTCTTGCCTTCTATGG+TGG	0.516025	3_1:+82653452	Msa0380710:CDS
AAGTAATGATTCGGTATTTC+TGG	0.133993	3_1:-82653889	None:intergenic
AATGAAGGAAATGTTGTCTT+AGG	0.248161	3_1:+82653961	Msa0380710:three_prime_UTR
ACAGATGCAGCCACCATAGA+AGG	0.440042	3_1:-82653462	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGGAGAAACATTGAGATT+TGG	-	chr3_1:82652265-82652284	None:intergenic	30.0%
TTAAGATTCTTCAAAGCTTG+GGG	-	chr3_1:82652289-82652308	None:intergenic	30.0%
CTTAAGATTCTTCAAAGCTT+GGG	-	chr3_1:82652290-82652309	None:intergenic	30.0%
CATTATAAACAAAAGACCCA+TGG	-	chr3_1:82653037-82653056	None:intergenic	30.0%
ATGTTAATTGATGTTCGTGT+AGG	+	chr3_1:82653054-82653073	Msa0380710:intron	30.0%
ATGTGCAATAATTGTGTTTC+AGG	+	chr3_1:82653228-82653247	Msa0380710:intron	30.0%
TGTGCAATAATTGTGTTTCA+GGG	+	chr3_1:82653229-82653248	Msa0380710:intron	30.0%
TCAGACCTCAAAATTACAAA+TGG	+	chr3_1:82653377-82653396	Msa0380710:intron	30.0%
TATAAGATTCTTGCCTTCTA+TGG	+	chr3_1:82653449-82653468	Msa0380710:CDS	30.0%
GAACATCAAATATTTACCCA+AGG	-	chr3_1:82653528-82653547	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	82652114	82654234	82652114	ID=Msa0380710;Name=Msa0380710
chr3_1	mRNA	82652114	82654234	82652114	ID=Msa0380710-mRNA-1;Parent=Msa0380710;Name=Msa0380710-mRNA-1;_AED=0.33;_eAED=0.33;_QI=52\|1\|1\|1\|1\|1\|8\|310\|352
chr3_1	exon	82652114	82652453	82652114	ID=Msa0380710-mRNA-1:exon:21084;Parent=Msa0380710-mRNA-1
chr3_1	exon	82652562	82652794	82652562	ID=Msa0380710-mRNA-1:exon:21085;Parent=Msa0380710-mRNA-1
chr3_1	exon	82652884	82652959	82652884	ID=Msa0380710-mRNA-1:exon:21086;Parent=Msa0380710-mRNA-1
chr3_1	exon	82653076	82653152	82653076	ID=Msa0380710-mRNA-1:exon:21087;Parent=Msa0380710-mRNA-1
chr3_1	exon	82653250	82653283	82653250	ID=Msa0380710-mRNA-1:exon:21088;Parent=Msa0380710-mRNA-1
chr3_1	exon	82653381	82653530	82653381	ID=Msa0380710-mRNA-1:exon:21089;Parent=Msa0380710-mRNA-1
chr3_1	exon	82653633	82653767	82653633	ID=Msa0380710-mRNA-1:exon:21090;Parent=Msa0380710-mRNA-1
chr3_1	exon	82653859	82654234	82653859	ID=Msa0380710-mRNA-1:exon:21091;Parent=Msa0380710-mRNA-1
chr3_1	five_prime_UTR	82652114	82652165	82652114	ID=Msa0380710-mRNA-1:five_prime_utr;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82652166	82652453	82652166	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82652562	82652794	82652562	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82652884	82652959	82652884	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82653076	82653152	82653076	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82653250	82653283	82653250	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82653381	82653530	82653381	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82653633	82653767	82653633	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	CDS	82653859	82653924	82653859	ID=Msa0380710-mRNA-1:cds;Parent=Msa0380710-mRNA-1
chr3_1	three_prime_UTR	82653925	82654234	82653925	ID=Msa0380710-mRNA-1:three_prime_utr;Parent=Msa0380710-mRNA-1

Gene Sequence

>Msa0380710

ATGGAGACTCGTGCTTCAAGGAAGAGGGCTAACGCTGAACCAATTGTTCTTAACAACAAAAAACAAAGGGTTGTTTTGGGTGATCTTCCCAATTTACCAAATCTCAATGTTTCTCCTAAACCCCAAGCTTTGAAGAATCTTAAGCCAAAGAAATCTGATGCTTTTCGTTTGTTTTCTGGTTTCAATTTCGATAAGCCAGATTTCAGCAAAAACAATGCAAAATCTGATTATGAAGAGATTTTTGAGCCTTATGCAGCTGATATTTCCAACTATCTTCGCTCAATGGAGGTTCAGAAAAAGAGAAGACCAATAATTGGTTATATTGAGAAAGTTCAAAGAGGTGTTACTGCAAATATGAGAGGGATACTGGTGGATTGGTTGGTTGAGGTTGCTGAAGAATACAAGCTTCTTCCTCAAACCCTTCATCTTGCTGTTTCATACATCGACAGATTCCTGTCTAATGAGTCTGTCAACAGATCTAAGCTTCAATTGCTTGGTGTTTCATCCATGCTCATTGCATCAAAGTATGAAGAAATCTCCCCACCTAAGGCTGTTGATTTCTGCCAGATTACTGATAACACCTATGAGCTGAAACAGGTCATTAAGATGGAAGTTGACATTCTTAAGTCATTGAATTTTGAAATGGGCAACCCTCATGTTAACACTTTTCTAAAGGAGTTTATTGGGTCTGCTACTGAAGATCTAAAGACCTCAAAATTACAAATGGAATTTCTGTGTAACTATCTTGCCGAGCTAAGCTTGATAGACTATGAATGTATAAGATTCTTGCCTTCTATGGTGGCTGCATCTGTTGTATTTCTTGCTAGATTCATAATCTGTCCTGGAGTACATCCTTGGACTTCATCATTGAGTGAATGCTTGTTTTATAAATCTGCTGAGTTGGAGGAATGTGTTCTGATTTTACATGATTTGTATTTGGTAAGAAGGGCTGCATCATTGAAAGCTGTTAGGGAGAAATACAAGCAACACAAGTTCAAGAATGTGGCAAACCTTCCTTCATCACCAGAAATACCGAATCATTACTTTGAAGAAGATTGA

Protein sequence

>Msa0380710

METRASRKRANAEPIVLNNKKQRVVLGDLPNLPNLNVSPKPQALKNLKPKKSDAFRLFSGFNFDKPDFSKNNAKSDYEEIFEPYAADISNYLRSMEVQKKRRPIIGYIEKVQRGVTANMRGILVDWLVEVAEEYKLLPQTLHLAVSYIDRFLSNESVNRSKLQLLGVSSMLIASKYEEISPPKAVDFCQITDNTYELKQVIKMEVDILKSLNFEMGNPHVNTFLKEFIGSATEDLKTSKLQMEFLCNYLAELSLIDYECIRFLPSMVAASVVFLARFIICPGVHPWTSSLSECLFYKSAELEECVLILHDLYLVRRAASLKAVREKYKQHKFKNVANLPSSPEIPNHYFEED*