AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298820 MtrunA17_Chr2g0291941 87.946 224 3 2 1 200 1 224 1.83e-136 382
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298820 AT1G31330.1 63.839 224 54 4 1 200 1 221 1.44e-91 269

Find 54 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGAGAGGAGTGATTTA+AGG 0.186212 2_3:+53024068 Msa0298820:three_prime_UTR
GTGATTTAAGGGATATATTT+TGG 0.191201 2_3:+53024080 Msa0298820:three_prime_UTR
TCTTAGGGTTGAGGTGGGTT+TGG 0.281147 2_3:-53022408 None:intergenic
TTTGGTTTATGAGGTAGTTT+TGG 0.294416 2_3:-53022431 None:intergenic
ATGATGTTGGTTGAGAGTTT+TGG 0.311230 2_3:-53022449 None:intergenic
CAAGGAGAGGAGTGATTTAA+GGG 0.340811 2_3:+53024069 Msa0298820:three_prime_UTR
TGTTCCACTTGCTTCTAGAT+TGG 0.359779 2_3:+53022955 Msa0298820:CDS
AAAAGAAGGTTTGATAACTA+TGG 0.369761 2_3:+53022737 Msa0298820:CDS
ATAGTTATCAAACCTTCTTT+TGG 0.372376 2_3:-53022735 None:intergenic
TTGTATATTGCTGGTTGGAT+TGG 0.374422 2_3:+53022860 Msa0298820:CDS
GTGGGTTTGGAGAGGTTAGT+TGG 0.391367 2_3:-53022395 None:intergenic
TGTATATTGCTGGTTGGATT+GGG 0.400227 2_3:+53022861 Msa0298820:CDS
GCCAGCGCTGGAGCGCTGTC+CGG 0.413463 2_3:-53022689 None:intergenic
TTTGGTCTTAGGGTTGAGGT+GGG 0.434939 2_3:-53022413 None:intergenic
ATAATAATCTCTTTCTGTGT+AGG 0.434953 2_3:-53022929 None:intergenic
GGGTGAAGCTTATTAATTTG+TGG 0.449217 2_3:-53023991 None:intergenic
TCCGGACAGCGCTCCAGCGC+TGG 0.450473 2_3:+53022688 Msa0298820:CDS
AGAATGCTTAAAGAATATAT+CGG 0.458361 2_3:-53024158 None:intergenic
TAGATTTGAGTTTACATCGT+TGG 0.460617 2_3:-53022501 None:intergenic
AGGATGATATTGATCAAGGA+TGG 0.465007 2_3:+53023762 Msa0298820:CDS
GAATGGTGATCAAAGACATT+GGG 0.484178 2_3:+53022808 Msa0298820:CDS
TTGTTGACTCATTGTGTGGA+TGG 0.485766 2_3:+53023818 Msa0298820:CDS
GGGTTGAGGTGGGTTTGGAG+AGG 0.489158 2_3:-53022403 None:intergenic
AACTCTCTATAAGCAGCAAT+AGG 0.489675 2_3:-53022998 None:intergenic
TGTGCTGCAGTGGATGATGT+TGG 0.507380 2_3:-53022462 None:intergenic
AAAAGAAACTTAGACATCCT+TGG 0.511183 2_3:-53023041 None:intergenic
CTCTCTCAAGCTTTACGCTC+CGG 0.514573 2_3:+53022670 Msa0298820:CDS
TTACCACATTTGATAGTGAA+TGG 0.520029 2_3:+53022791 Msa0298820:CDS
TATTGATCAAGGATGGAGGA+AGG 0.524472 2_3:+53023769 Msa0298820:CDS
GGTTTGTTGTGTGGTGCTGA+TGG 0.525144 2_3:+53022767 Msa0298820:CDS
TTTGAGTTTACATCGTTGGT+TGG 0.526095 2_3:-53022497 None:intergenic
TTTATTGTTGACTCATTGTG+TGG 0.527806 2_3:+53023814 Msa0298820:CDS
ATGTCGGCGACAGCGGGGAG+TGG 0.529776 2_3:-53022572 None:intergenic
TTTCTTGGTTTGTGCTGCAG+TGG 0.533687 2_3:-53022472 None:intergenic
AGAGAGGATGATATTGATCA+AGG 0.536833 2_3:+53023758 Msa0298820:CDS
TGGGGTGAGTTTATCACACC+AGG 0.538935 2_3:+53022827 Msa0298820:CDS
GAAGCTTATTAATTTGTGGA+AGG 0.551262 2_3:-53023987 None:intergenic
CAGTTGAGAAAACCAAAAGA+AGG 0.554512 2_3:+53022723 Msa0298820:CDS
GGAAGGGTGATTATGAGAGG+AGG 0.570852 2_3:+53023786 Msa0298820:CDS
GCTTATAGAGAGTTGTTGAA+TGG 0.572883 2_3:+53023007 Msa0298820:CDS
GAAGGGTGATTATGAGAGGA+GGG 0.573028 2_3:+53023787 Msa0298820:CDS
ATGATATTGATCAAGGATGG+AGG 0.574694 2_3:+53023765 Msa0298820:CDS
ATTGATCAAGGATGGAGGAA+GGG 0.578341 2_3:+53023770 Msa0298820:CDS
GGAGGAAGGGTGATTATGAG+AGG 0.587504 2_3:+53023783 Msa0298820:CDS
TGAATGGTGATCAAAGACAT+TGG 0.591211 2_3:+53022807 Msa0298820:CDS
AAAACCAATCTAGAAGCAAG+TGG 0.593997 2_3:-53022959 None:intergenic
TTTGATAACTATGGAAAACA+AGG 0.596332 2_3:+53022746 Msa0298820:CDS
CGGGGAGTGGTGATGAGATG+AGG 0.601172 2_3:-53022559 None:intergenic
TCACCATTCACTATCAAATG+TGG 0.665222 2_3:-53022794 None:intergenic
GAATGGTGAACTCATTGCCA+AGG 0.676808 2_3:+53023024 Msa0298820:CDS
GGAAAACAAGGTTTGTTGTG+TGG 0.679016 2_3:+53022758 Msa0298820:CDS
CGGAGCGTAAAGCTTGAGAG+AGG 0.679223 2_3:-53022669 None:intergenic
GGGGTGAGTTTATCACACCA+GGG 0.698649 2_3:+53022828 Msa0298820:CDS
AATGGTGATCAAAGACATTG+GGG 0.721922 2_3:+53022809 Msa0298820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTTTGTTATTTTT+AGG + chr2_3:53023668-53023687 Msa0298820:intron 10.0%
!!! AATGAAATTTTGTTATTTTT+AGG + chr2_3:53023668-53023687 Msa0298820:intron 10.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr2_3:53023208-53023227 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG + chr2_3:53023290-53023309 Msa0298820:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG + chr2_3:53023291-53023310 Msa0298820:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG + chr2_3:53023292-53023311 Msa0298820:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG - chr2_3:53023577-53023596 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr2_3:53023208-53023227 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG + chr2_3:53023290-53023309 Msa0298820:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG + chr2_3:53023291-53023310 Msa0298820:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG + chr2_3:53023292-53023311 Msa0298820:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG - chr2_3:53023577-53023596 None:intergenic 15.0%
!!! ATATTGTTTTTGTATATTGC+TGG + chr2_3:53022851-53022870 Msa0298820:CDS 20.0%
!! ATACTACAATTTAACCAATA+AGG - chr2_3:53023171-53023190 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG + chr2_3:53023281-53023300 Msa0298820:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG + chr2_3:53023396-53023415 Msa0298820:intron 20.0%
!! TGAAGAAGAAAAAAATGAAA+GGG - chr2_3:53024014-53024033 None:intergenic 20.0%
!! ATGAAGAAGAAAAAAATGAA+AGG - chr2_3:53024015-53024034 None:intergenic 20.0%
!!! TTTTTTCTTCTTCATGAAAA+TGG + chr2_3:53024020-53024039 Msa0298820:three_prime_UTR 20.0%
!!! ATATTGTTTTTGTATATTGC+TGG + chr2_3:53022851-53022870 Msa0298820:CDS 20.0%
!! ATACTACAATTTAACCAATA+AGG - chr2_3:53023171-53023190 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG + chr2_3:53023281-53023300 Msa0298820:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG + chr2_3:53023396-53023415 Msa0298820:intron 20.0%
!! TGAAGAAGAAAAAAATGAAA+GGG - chr2_3:53024014-53024033 None:intergenic 20.0%
!! ATGAAGAAGAAAAAAATGAA+AGG - chr2_3:53024015-53024034 None:intergenic 20.0%
!!! TTTTTTCTTCTTCATGAAAA+TGG + chr2_3:53024020-53024039 Msa0298820:three_prime_UTR 20.0%
!! ATAGTTATCAAACCTTCTTT+TGG - chr2_3:53022738-53022757 None:intergenic 25.0%
!! AAAAGAAGGTTTGATAACTA+TGG + chr2_3:53022737-53022756 Msa0298820:CDS 25.0%
!! TTTGATAACTATGGAAAACA+AGG + chr2_3:53022746-53022765 Msa0298820:CDS 25.0%
! ATATACAAAAACAATATCCC+TGG - chr2_3:53022848-53022867 None:intergenic 25.0%
! ATAATAATCTCTTTCTGTGT+AGG - chr2_3:53022932-53022951 None:intergenic 25.0%
!!! AGTTTCTTTTGTTTACAACA+AGG + chr2_3:53023054-53023073 Msa0298820:intron 25.0%
! GATTGAGTAAATATCCTTAT+TGG + chr2_3:53023154-53023173 Msa0298820:intron 25.0%
! TTTGTAACCAATCTAATTAG+AGG + chr2_3:53023352-53023371 Msa0298820:intron 25.0%
!! TTGATTCACATTTTGCAATT+AGG + chr2_3:53023381-53023400 Msa0298820:intron 25.0%
! CTTGAAAATGTGTTTATAAG+TGG + chr2_3:53023447-53023466 Msa0298820:intron 25.0%
! TTGTCAAACATAAACTAATG+TGG + chr2_3:53023626-53023645 Msa0298820:intron 25.0%
! TGTCAAACATAAACTAATGT+GGG + chr2_3:53023627-53023646 Msa0298820:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG + chr2_3:53023722-53023741 Msa0298820:intron 25.0%
!! GTGATTTAAGGGATATATTT+TGG + chr2_3:53024080-53024099 Msa0298820:three_prime_UTR 25.0%
!! ATAGTTATCAAACCTTCTTT+TGG - chr2_3:53022738-53022757 None:intergenic 25.0%
!! AAAAGAAGGTTTGATAACTA+TGG + chr2_3:53022737-53022756 Msa0298820:CDS 25.0%
!! TTTGATAACTATGGAAAACA+AGG + chr2_3:53022746-53022765 Msa0298820:CDS 25.0%
! ATATACAAAAACAATATCCC+TGG - chr2_3:53022848-53022867 None:intergenic 25.0%
! ATAATAATCTCTTTCTGTGT+AGG - chr2_3:53022932-53022951 None:intergenic 25.0%
!!! AGTTTCTTTTGTTTACAACA+AGG + chr2_3:53023054-53023073 Msa0298820:intron 25.0%
! GATTGAGTAAATATCCTTAT+TGG + chr2_3:53023154-53023173 Msa0298820:intron 25.0%
! TTTGTAACCAATCTAATTAG+AGG + chr2_3:53023352-53023371 Msa0298820:intron 25.0%
!! TTGATTCACATTTTGCAATT+AGG + chr2_3:53023381-53023400 Msa0298820:intron 25.0%
! CTTGAAAATGTGTTTATAAG+TGG + chr2_3:53023447-53023466 Msa0298820:intron 25.0%
! TTGTCAAACATAAACTAATG+TGG + chr2_3:53023626-53023645 Msa0298820:intron 25.0%
! TGTCAAACATAAACTAATGT+GGG + chr2_3:53023627-53023646 Msa0298820:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG + chr2_3:53023722-53023741 Msa0298820:intron 25.0%
!! GTGATTTAAGGGATATATTT+TGG + chr2_3:53024080-53024099 Msa0298820:three_prime_UTR 25.0%
!! TTTGGTTTATGAGGTAGTTT+TGG - chr2_3:53022434-53022453 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG - chr2_3:53022504-53022523 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG - chr2_3:53022611-53022630 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG - chr2_3:53022714-53022733 None:intergenic 30.0%
!! TTACCACATTTGATAGTGAA+TGG + chr2_3:53022791-53022810 Msa0298820:CDS 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG + chr2_3:53022855-53022874 Msa0298820:CDS 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG + chr2_3:53022966-53022985 Msa0298820:CDS 30.0%
AAAAGAAACTTAGACATCCT+TGG - chr2_3:53023044-53023063 None:intergenic 30.0%
TACGGATTCGATACAAATAT+TGG - chr2_3:53023246-53023265 None:intergenic 30.0%
TTTAGTCCTTCAAATACTGA+AGG - chr2_3:53023269-53023288 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG - chr2_3:53023362-53023381 None:intergenic 30.0%
AGTTTCAAATAACCTAGATG+TGG - chr2_3:53023520-53023539 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG + chr2_3:53023814-53023833 Msa0298820:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG + chr2_3:53023927-53023946 Msa0298820:three_prime_UTR 30.0%
AGTCCACATTTGAGTAAAAA+AGG - chr2_3:53023933-53023952 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG + chr2_3:53023933-53023952 Msa0298820:three_prime_UTR 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG - chr2_3:53023990-53024009 None:intergenic 30.0%
!! TTTGGTTTATGAGGTAGTTT+TGG - chr2_3:53022434-53022453 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG - chr2_3:53022504-53022523 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG - chr2_3:53022611-53022630 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG - chr2_3:53022714-53022733 None:intergenic 30.0%
!! TTACCACATTTGATAGTGAA+TGG + chr2_3:53022791-53022810 Msa0298820:CDS 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG + chr2_3:53022855-53022874 Msa0298820:CDS 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG + chr2_3:53022966-53022985 Msa0298820:CDS 30.0%
AAAAGAAACTTAGACATCCT+TGG - chr2_3:53023044-53023063 None:intergenic 30.0%
TACGGATTCGATACAAATAT+TGG - chr2_3:53023246-53023265 None:intergenic 30.0%
TTTAGTCCTTCAAATACTGA+AGG - chr2_3:53023269-53023288 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG - chr2_3:53023362-53023381 None:intergenic 30.0%
AGTTTCAAATAACCTAGATG+TGG - chr2_3:53023520-53023539 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG + chr2_3:53023814-53023833 Msa0298820:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG + chr2_3:53023927-53023946 Msa0298820:three_prime_UTR 30.0%
AGTCCACATTTGAGTAAAAA+AGG - chr2_3:53023933-53023952 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG + chr2_3:53023933-53023952 Msa0298820:three_prime_UTR 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG - chr2_3:53023990-53024009 None:intergenic 30.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG - chr2_3:53022426-53022445 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG - chr2_3:53022427-53022446 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG - chr2_3:53022443-53022462 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG - chr2_3:53022452-53022471 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG - chr2_3:53022500-53022519 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG - chr2_3:53022636-53022655 None:intergenic 35.0%
CAGTTGAGAAAACCAAAAGA+AGG + chr2_3:53022723-53022742 Msa0298820:CDS 35.0%
TCACCATTCACTATCAAATG+TGG - chr2_3:53022797-53022816 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG + chr2_3:53022807-53022826 Msa0298820:CDS 35.0%
GAATGGTGATCAAAGACATT+GGG + chr2_3:53022808-53022827 Msa0298820:CDS 35.0%
AATGGTGATCAAAGACATTG+GGG + chr2_3:53022809-53022828 Msa0298820:CDS 35.0%
! TTGTATATTGCTGGTTGGAT+TGG + chr2_3:53022860-53022879 Msa0298820:CDS 35.0%
! TGTATATTGCTGGTTGGATT+GGG + chr2_3:53022861-53022880 Msa0298820:CDS 35.0%
AAAACCAATCTAGAAGCAAG+TGG - chr2_3:53022962-53022981 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG + chr2_3:53022965-53022984 Msa0298820:CDS 35.0%
AACTCTCTATAAGCAGCAAT+AGG - chr2_3:53023001-53023020 None:intergenic 35.0%
GCTTATAGAGAGTTGTTGAA+TGG + chr2_3:53023007-53023026 Msa0298820:CDS 35.0%
TCCTTCAAATACTGAAGGTA+CGG - chr2_3:53023264-53023283 None:intergenic 35.0%
TCTTACAAAACGAATCTGTG+AGG - chr2_3:53023486-53023505 None:intergenic 35.0%
AGAGAGGATGATATTGATCA+AGG + chr2_3:53023758-53023777 Msa0298820:CDS 35.0%
AGGATGATATTGATCAAGGA+TGG + chr2_3:53023762-53023781 Msa0298820:CDS 35.0%
ATGATATTGATCAAGGATGG+AGG + chr2_3:53023765-53023784 Msa0298820:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG - chr2_3:53023994-53024013 None:intergenic 35.0%
GCTAGTACAAAAATGAAGCA+AGG + chr2_3:53024051-53024070 Msa0298820:three_prime_UTR 35.0%
TACAAAAATGAAGCAAGGAG+AGG + chr2_3:53024056-53024075 Msa0298820:three_prime_UTR 35.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG - chr2_3:53022426-53022445 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG - chr2_3:53022427-53022446 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG - chr2_3:53022443-53022462 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG - chr2_3:53022452-53022471 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG - chr2_3:53022500-53022519 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG - chr2_3:53022636-53022655 None:intergenic 35.0%
CAGTTGAGAAAACCAAAAGA+AGG + chr2_3:53022723-53022742 Msa0298820:CDS 35.0%
TCACCATTCACTATCAAATG+TGG - chr2_3:53022797-53022816 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG + chr2_3:53022807-53022826 Msa0298820:CDS 35.0%
GAATGGTGATCAAAGACATT+GGG + chr2_3:53022808-53022827 Msa0298820:CDS 35.0%
AATGGTGATCAAAGACATTG+GGG + chr2_3:53022809-53022828 Msa0298820:CDS 35.0%
! TTGTATATTGCTGGTTGGAT+TGG + chr2_3:53022860-53022879 Msa0298820:CDS 35.0%
! TGTATATTGCTGGTTGGATT+GGG + chr2_3:53022861-53022880 Msa0298820:CDS 35.0%
AAAACCAATCTAGAAGCAAG+TGG - chr2_3:53022962-53022981 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG + chr2_3:53022965-53022984 Msa0298820:CDS 35.0%
AACTCTCTATAAGCAGCAAT+AGG - chr2_3:53023001-53023020 None:intergenic 35.0%
GCTTATAGAGAGTTGTTGAA+TGG + chr2_3:53023007-53023026 Msa0298820:CDS 35.0%
TCCTTCAAATACTGAAGGTA+CGG - chr2_3:53023264-53023283 None:intergenic 35.0%
TCTTACAAAACGAATCTGTG+AGG - chr2_3:53023486-53023505 None:intergenic 35.0%
AGAGAGGATGATATTGATCA+AGG + chr2_3:53023758-53023777 Msa0298820:CDS 35.0%
AGGATGATATTGATCAAGGA+TGG + chr2_3:53023762-53023781 Msa0298820:CDS 35.0%
ATGATATTGATCAAGGATGG+AGG + chr2_3:53023765-53023784 Msa0298820:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG - chr2_3:53023994-53024013 None:intergenic 35.0%
GCTAGTACAAAAATGAAGCA+AGG + chr2_3:53024051-53024070 Msa0298820:three_prime_UTR 35.0%
TACAAAAATGAAGCAAGGAG+AGG + chr2_3:53024056-53024075 Msa0298820:three_prime_UTR 35.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG - chr2_3:53022420-53022439 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG - chr2_3:53022490-53022509 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG - chr2_3:53022604-53022623 None:intergenic 40.0%
!! GGAAAACAAGGTTTGTTGTG+TGG + chr2_3:53022758-53022777 Msa0298820:CDS 40.0%
TGTTCCACTTGCTTCTAGAT+TGG + chr2_3:53022955-53022974 Msa0298820:CDS 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG + chr2_3:53022975-53022994 Msa0298820:CDS 40.0%
TCCGTACCTTCAGTATTTGA+AGG + chr2_3:53023260-53023279 Msa0298820:intron 40.0%
AGTTGAGTTAGACCACATCT+AGG + chr2_3:53023505-53023524 Msa0298820:intron 40.0%
TTGCAATCGTGACTTTGTGT+TGG + chr2_3:53023705-53023724 Msa0298820:intron 40.0%
! TGGTGATTTTCAGACAAGAG+AGG + chr2_3:53023742-53023761 Msa0298820:intron 40.0%
TATTGATCAAGGATGGAGGA+AGG + chr2_3:53023769-53023788 Msa0298820:CDS 40.0%
ATTGATCAAGGATGGAGGAA+GGG + chr2_3:53023770-53023789 Msa0298820:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG + chr2_3:53023818-53023837 Msa0298820:CDS 40.0%
CAAGGAGAGGAGTGATTTAA+GGG + chr2_3:53024069-53024088 Msa0298820:three_prime_UTR 40.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG - chr2_3:53022420-53022439 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG - chr2_3:53022490-53022509 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG - chr2_3:53022604-53022623 None:intergenic 40.0%
!! GGAAAACAAGGTTTGTTGTG+TGG + chr2_3:53022758-53022777 Msa0298820:CDS 40.0%
TGTTCCACTTGCTTCTAGAT+TGG + chr2_3:53022955-53022974 Msa0298820:CDS 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG + chr2_3:53022975-53022994 Msa0298820:CDS 40.0%
TCCGTACCTTCAGTATTTGA+AGG + chr2_3:53023260-53023279 Msa0298820:intron 40.0%
AGTTGAGTTAGACCACATCT+AGG + chr2_3:53023505-53023524 Msa0298820:intron 40.0%
TTGCAATCGTGACTTTGTGT+TGG + chr2_3:53023705-53023724 Msa0298820:intron 40.0%
! TGGTGATTTTCAGACAAGAG+AGG + chr2_3:53023742-53023761 Msa0298820:intron 40.0%
TATTGATCAAGGATGGAGGA+AGG + chr2_3:53023769-53023788 Msa0298820:CDS 40.0%
ATTGATCAAGGATGGAGGAA+GGG + chr2_3:53023770-53023789 Msa0298820:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG + chr2_3:53023818-53023837 Msa0298820:CDS 40.0%
CAAGGAGAGGAGTGATTTAA+GGG + chr2_3:53024069-53024088 Msa0298820:three_prime_UTR 40.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG - chr2_3:53022416-53022435 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG - chr2_3:53022417-53022436 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG - chr2_3:53022475-53022494 None:intergenic 45.0%
! ATATTGCTGGTTGGATTGGG+TGG + chr2_3:53022864-53022883 Msa0298820:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG + chr2_3:53022865-53022884 Msa0298820:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG + chr2_3:53023024-53023043 Msa0298820:CDS 45.0%
GAAGGGTGATTATGAGAGGA+GGG + chr2_3:53023787-53023806 Msa0298820:CDS 45.0%
GCAAGGAGAGGAGTGATTTA+AGG + chr2_3:53024068-53024087 Msa0298820:three_prime_UTR 45.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG - chr2_3:53022416-53022435 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG - chr2_3:53022417-53022436 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG - chr2_3:53022475-53022494 None:intergenic 45.0%
! ATATTGCTGGTTGGATTGGG+TGG + chr2_3:53022864-53022883 Msa0298820:intron 45.0%
! TATTGCTGGTTGGATTGGGT+GGG + chr2_3:53022865-53022884 Msa0298820:intron 45.0%
GAATGGTGAACTCATTGCCA+AGG + chr2_3:53023024-53023043 Msa0298820:CDS 45.0%
GAAGGGTGATTATGAGAGGA+GGG + chr2_3:53023787-53023806 Msa0298820:CDS 45.0%
GCAAGGAGAGGAGTGATTTA+AGG + chr2_3:53024068-53024087 Msa0298820:three_prime_UTR 45.0%
GTGGGTTTGGAGAGGTTAGT+TGG - chr2_3:53022398-53022417 None:intergenic 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG - chr2_3:53022411-53022430 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG - chr2_3:53022465-53022484 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG - chr2_3:53022600-53022619 None:intergenic 50.0%
CTCTCTCAAGCTTTACGCTC+CGG + chr2_3:53022670-53022689 Msa0298820:CDS 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG + chr2_3:53022767-53022786 Msa0298820:CDS 50.0%
TGGGGTGAGTTTATCACACC+AGG + chr2_3:53022827-53022846 Msa0298820:CDS 50.0%
GGGGTGAGTTTATCACACCA+GGG + chr2_3:53022828-53022847 Msa0298820:CDS 50.0%
GGAGGAAGGGTGATTATGAG+AGG + chr2_3:53023783-53023802 Msa0298820:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG + chr2_3:53023786-53023805 Msa0298820:CDS 50.0%
GTGGGTTTGGAGAGGTTAGT+TGG - chr2_3:53022398-53022417 None:intergenic 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG - chr2_3:53022411-53022430 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG - chr2_3:53022465-53022484 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG - chr2_3:53022600-53022619 None:intergenic 50.0%
CTCTCTCAAGCTTTACGCTC+CGG + chr2_3:53022670-53022689 Msa0298820:CDS 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG + chr2_3:53022767-53022786 Msa0298820:CDS 50.0%
TGGGGTGAGTTTATCACACC+AGG + chr2_3:53022827-53022846 Msa0298820:CDS 50.0%
GGGGTGAGTTTATCACACCA+GGG + chr2_3:53022828-53022847 Msa0298820:CDS 50.0%
GGAGGAAGGGTGATTATGAG+AGG + chr2_3:53023783-53023802 Msa0298820:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG + chr2_3:53023786-53023805 Msa0298820:CDS 50.0%
! TGGTGTTAGGCCGGAGATGT+CGG - chr2_3:53022591-53022610 None:intergenic 55.0%
CGGAGCGTAAAGCTTGAGAG+AGG - chr2_3:53022672-53022691 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG - chr2_3:53022704-53022723 None:intergenic 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG - chr2_3:53022591-53022610 None:intergenic 55.0%
CGGAGCGTAAAGCTTGAGAG+AGG - chr2_3:53022672-53022691 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG - chr2_3:53022704-53022723 None:intergenic 55.0%
! GGGTTGAGGTGGGTTTGGAG+AGG - chr2_3:53022406-53022425 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG - chr2_3:53022562-53022581 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG + chr2_3:53022869-53022888 Msa0298820:intron 60.0%
!! GTTGGATTGGGTGGGTTGGC+AGG + chr2_3:53022873-53022892 Msa0298820:intron 60.0%
! GGGTTGAGGTGGGTTTGGAG+AGG - chr2_3:53022406-53022425 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG - chr2_3:53022562-53022581 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG + chr2_3:53022869-53022888 Msa0298820:intron 60.0%
!! GTTGGATTGGGTGGGTTGGC+AGG + chr2_3:53022873-53022892 Msa0298820:intron 60.0%
ATGTCGGCGACAGCGGGGAG+TGG - chr2_3:53022575-53022594 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG - chr2_3:53022580-53022599 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG - chr2_3:53022581-53022600 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG + chr2_3:53022578-53022597 Msa0298820:intron 70.0%
GCCGGAGATGTCGGCGACAG+CGG - chr2_3:53022582-53022601 None:intergenic 70.0%
ATGTCGGCGACAGCGGGGAG+TGG - chr2_3:53022575-53022594 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG - chr2_3:53022580-53022599 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG - chr2_3:53022581-53022600 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG + chr2_3:53022578-53022597 Msa0298820:intron 70.0%
GCCGGAGATGTCGGCGACAG+CGG - chr2_3:53022582-53022601 None:intergenic 70.0%
TCCGGACAGCGCTCCAGCGC+TGG + chr2_3:53022688-53022707 Msa0298820:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG - chr2_3:53022692-53022711 None:intergenic 75.0%
TCCGGACAGCGCTCCAGCGC+TGG + chr2_3:53022688-53022707 Msa0298820:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG - chr2_3:53022692-53022711 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 53022380 53024175 53022380 ID=Msa0298820;Name=Msa0298820
chr2_3 mRNA 53022380 53024175 53022380 ID=Msa0298820-mRNA-1;Parent=Msa0298820;Name=Msa0298820-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0.25|1|0|0|4|304|237
chr2_3 exon 53022380 53022583 53022380 ID=Msa0298820-mRNA-1:exon:16966;Parent=Msa0298820-mRNA-1
chr2_3 exon 53022644 53022882 53022644 ID=Msa0298820-mRNA-1:exon:16967;Parent=Msa0298820-mRNA-1
chr2_3 exon 53022895 53023048 53022895 ID=Msa0298820-mRNA-1:exon:16968;Parent=Msa0298820-mRNA-1
chr2_3 exon 53023755 53024175 53023755 ID=Msa0298820-mRNA-1:exon:16969;Parent=Msa0298820-mRNA-1
chr2_3 CDS 53022380 53022583 53022380 ID=Msa0298820-mRNA-1:cds;Parent=Msa0298820-mRNA-1
chr2_3 CDS 53022644 53022882 53022644 ID=Msa0298820-mRNA-1:cds;Parent=Msa0298820-mRNA-1
chr2_3 CDS 53022895 53023048 53022895 ID=Msa0298820-mRNA-1:cds;Parent=Msa0298820-mRNA-1
chr2_3 CDS 53023755 53023871 53023755 ID=Msa0298820-mRNA-1:cds;Parent=Msa0298820-mRNA-1
chr2_3 three_prime_UTR 53023872 53024175 53023872 ID=Msa0298820-mRNA-1:three_prime_utr;Parent=Msa0298820-mRNA-1
Gene Sequence

>Msa0298820

ATGTCTCTAACAATTCCAACTAACCTCTCCAAACCCACCTCAACCCTAAGACCAAAACTACCTCATAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAAGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCTGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTAAACAATCAATCAAAAAGCTTGAATCCTCTCTCAAGCTTTACGCTCCGGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAAAGAAGGTTTGATAACTATGGAAAACAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGTGAGTTTATCACACCAGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGAGTTACTTGATTGCTATTCGTGACGAGAAGAAACCTACACAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTATAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATACAAGAGAGGATGATATTGATCAAGGATGGAGGAAGGGTGATTATGAGAGGAGGGTGCTTTTATTGTTGACTCATTGTGTGGATGGATCTTATAATATTTATGCGCTCAATTTGTAA

Protein sequence

>Msa0298820

MSLTIPTNLSKPTSTLRPKLPHKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDTREDDIDQGWRKGDYERRVLLLLTHCVDGSYNIYALNL*