AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147870 MtrunA17_Chr7g0235021 94.529 329 18 0 1 329 1 329 0.0 634
Msa1147870 MtrunA17_Chr4g0015051 68.085 329 104 1 1 328 1 329 3.94e-163 458
Msa1147870 MtrunA17_Chr4g0014951 67.781 329 105 1 1 328 1 329 1.22e-158 446
Msa1147870 MtrunA17_Chr4g0014971 66.869 329 108 1 1 328 1 329 1.55e-158 446
Msa1147870 MtrunA17_Chr4g0015091 66.159 328 111 0 1 328 1 328 2.70e-157 443
Msa1147870 MtrunA17_Chr4g0014931 67.477 329 106 1 1 328 1 329 7.40e-157 442
Msa1147870 MtrunA17_Chr4g0014691 65.549 328 113 0 1 328 1 328 7.01e-153 432
Msa1147870 MtrunA17_Chr4g0014541 65.244 328 114 0 1 328 1 328 8.68e-152 429
Msa1147870 MtrunA17_Chr4g0015001 65.639 227 78 0 102 328 4 230 2.75e-102 300
Msa1147870 MtrunA17_Chr8g0365421 33.233 331 184 8 6 326 76 379 5.63e-37 136
Msa1147870 MtrunA17_Chr8g0351271 30.631 333 190 8 6 326 3 306 3.44e-35 130
Msa1147870 MtrunA17_Chr8g0351481 30.631 333 190 8 6 326 3 306 5.33e-35 130
Msa1147870 MtrunA17_Chr6g0453201 34.030 335 179 12 7 328 12 317 2.58e-31 120
Msa1147870 MtrunA17_Chr6g0466321 32.024 331 187 11 7 326 20 323 7.54e-28 110
Msa1147870 MtrunA17_Chr6g0453191 33.333 309 170 10 7 306 12 293 2.79e-27 108
Msa1147870 MtrunA17_Chr7g0228011 34.226 336 175 11 6 326 8 312 4.11e-27 108
Msa1147870 MtrunA17_Chr6g0465501 31.804 327 185 11 11 326 24 323 6.72e-27 108
Msa1147870 MtrunA17_Chr2g0316731 28.116 345 215 10 7 329 27 360 8.79e-24 100
Msa1147870 MtrunA17_Chr2g0281281 25.994 327 214 9 16 327 10 323 9.53e-22 94.0
Msa1147870 MtrunA17_Chr2g0281301 28.485 330 202 13 16 327 23 336 1.35e-20 90.9
Msa1147870 MtrunA17_Chr4g0045041 29.305 331 189 14 24 326 306 619 1.88e-15 77.0
Msa1147870 MtrunA17_Chr4g0045061 28.182 330 194 14 24 326 306 619 5.72e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147870 AT4G13010.1 70.732 328 96 0 1 328 1 328 9.48e-169 472
Msa1147870 AT1G23740.1 34.535 333 181 9 4 326 76 381 4.56e-37 137
Msa1147870 AT3G15090.1 27.326 344 219 9 7 329 33 366 7.93e-24 100
Msa1147870 AT4G21580.1 28.614 332 201 11 16 328 10 324 4.96e-21 92.4
Msa1147870 AT4G21580.3 28.701 331 196 11 16 328 10 318 3.69e-20 89.7
Msa1147870 AT1G49670.1 34.359 195 109 8 19 208 301 481 1.70e-17 83.6
Msa1147870 AT4G21580.2 27.304 293 184 8 52 328 12 291 3.92e-16 77.8
Msa1147870 AT1G49670.2 30.986 213 115 8 19 208 301 504 4.88e-15 76.3
Msa1147870 AT5G61510.1 23.512 336 236 7 2 327 80 404 4.76e-12 67.0

Find 83 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGATGCTGAGATTTC+TGG 0.190340 7_4:-27377821 None:intergenic
AAGAAGTAGAAGAACCTTTA+AGG 0.200493 7_4:-27374783 None:intergenic
AGCCTTAGCTAGAGGAAATT+TGG 0.203726 7_4:-27378365 None:intergenic
AGGAAGTTACATGGTATATA+TGG 0.205187 7_4:-27376382 None:intergenic
AGCTGAGTTTGCTGTTATTA+AGG 0.238342 7_4:+27377775 Msa1147870:CDS
TGGAGGATCCACTGCCTTAA+AGG 0.271645 7_4:+27374769 Msa1147870:CDS
CACTTTCTGTTTGTTCCAAT+TGG 0.275188 7_4:+27374658 Msa1147870:five_prime_UTR
AGTATTGATGGTCATGCAAC+TGG 0.350063 7_4:+27378406 Msa1147870:CDS
TTCTGTACTTTCCAATCAAA+TGG 0.355839 7_4:-27376325 None:intergenic
TTACCATTCGTGTTCAAGTT+AGG 0.361630 7_4:-27378175 None:intergenic
CTCTTTAATTCAACACCAAT+TGG 0.370280 7_4:-27378085 None:intergenic
GAGTTTGATTCCTATGGATT+TGG 0.372539 7_4:-27377888 None:intergenic
CCAATTGGTATCATACTTTG+TGG 0.374771 7_4:+27374673 Msa1147870:five_prime_UTR
CTAGTATAAATCCATTTGAT+TGG 0.387955 7_4:+27376314 Msa1147870:CDS
AACTGAAGATCCTTACCCTT+TGG 0.395500 7_4:-27378295 None:intergenic
GTTGAATTAAAGAGTCCTTC+TGG 0.400486 7_4:+27378094 Msa1147870:CDS
CCACAAAGTATGATACCAAT+TGG 0.428345 7_4:-27374673 None:intergenic
GGTGTTAAGAAGTTCAAAAC+TGG 0.429943 7_4:+27377269 Msa1147870:CDS
ATCAAAACTTCATCTTTACT+AGG 0.431176 7_4:-27376277 None:intergenic
ATGGAAATTGTCAAAAGCTT+AGG 0.438856 7_4:+27378034 Msa1147870:CDS
TTCCATGTTTCGAGCGCCGC+AGG 0.443235 7_4:-27378017 None:intergenic
ATTGACTATAAAACACCAAT+TGG 0.445370 7_4:+27378070 Msa1147870:CDS
TCCGTCGAGTTTGATTCCTA+TGG 0.448350 7_4:-27377894 None:intergenic
TCTTTACTAGGACTTGGTAT+TGG 0.449528 7_4:-27376265 None:intergenic
GCTTCTAATTCCAAAGGGTA+AGG 0.460785 7_4:+27378285 Msa1147870:CDS
GGTTGGTCTAAGAGTATTGA+TGG 0.460981 7_4:+27378394 Msa1147870:CDS
ACATGGTATATATGGGAACT+TGG 0.461377 7_4:-27376374 None:intergenic
CTATGGATTTGGTGAGTGCT+TGG 0.465508 7_4:-27377877 None:intergenic
CCCTTTGGAATTAGAAGCAA+AGG 0.479238 7_4:-27378280 None:intergenic
AAAACTGGTGACAAAGTTGT+AGG 0.479548 7_4:+27377284 Msa1147870:CDS
TCACTCTCTCGCTGTGGACA+TGG 0.482787 7_4:+27374706 Msa1147870:exon
GGAAGTTACATGGTATATAT+GGG 0.494611 7_4:-27376381 None:intergenic
CTTGTTGATTTGATTAAGCA+AGG 0.495471 7_4:+27378319 Msa1147870:CDS
TTATTATGGTAGAGTGGTGG+AGG 0.497869 7_4:+27377749 Msa1147870:intron
GCCTTTGCTTCTAATTCCAA+AGG 0.500098 7_4:+27378279 Msa1147870:CDS
TAGAAGAACCTTTAAGGCAG+TGG 0.507826 7_4:-27374777 None:intergenic
ACTTCATCTTTACTAGGACT+TGG 0.510602 7_4:-27376271 None:intergenic
CCTCTAGCTAAGGCTGAAGA+TGG 0.513384 7_4:+27378373 Msa1147870:CDS
CACCTGCGGCGCTCGAAACA+TGG 0.515827 7_4:+27378015 Msa1147870:CDS
TGATGTAGCAGGAGAGGTCA+TGG 0.520868 7_4:+27377235 Msa1147870:CDS
CAGTACTATGCCTATGGTGG+AGG 0.522680 7_4:+27374752 Msa1147870:CDS
GGAATCAAACTCGACGGAAG+TGG 0.533552 7_4:+27377899 Msa1147870:CDS
CTCCAAATTTCCTCTAGCTA+AGG 0.534188 7_4:+27378363 Msa1147870:CDS
TGCTTGGAGAGCTGTTAGAC+CGG 0.534643 7_4:-27377861 None:intergenic
CCTTTGCTTCTAATTCCAAA+GGG 0.536074 7_4:+27378280 Msa1147870:CDS
GAGCCTAACTTGAACACGAA+TGG 0.537643 7_4:+27378172 Msa1147870:CDS
GCTGTTCAGTACTATGCCTA+TGG 0.546682 7_4:+27374746 Msa1147870:CDS
ATAATAGGTACTGATGTAGC+AGG 0.548468 7_4:+27377224 Msa1147870:intron
GCAGGAGAGGTCATGGAGGT+TGG 0.552538 7_4:+27377242 Msa1147870:CDS
CATGTTTCGAGCGCCGCAGG+TGG 0.554237 7_4:-27378014 None:intergenic
TAGCTAAGGCTGAAGATGGT+TGG 0.558067 7_4:+27378377 Msa1147870:CDS
ATCTCAGCATCTGAATGCGC+CGG 0.558268 7_4:+27377827 Msa1147870:CDS
TGCGCCGGCTTACCTGTCGC+CGG 0.562445 7_4:+27377842 Msa1147870:CDS
CATGGTATATATGGGAACTT+GGG 0.564940 7_4:-27376373 None:intergenic
TAGACCGGCGACAGGTAAGC+CGG 0.566177 7_4:-27377846 None:intergenic
CAAAAGCTTAGGAGCTGATG+AGG 0.570564 7_4:+27378045 Msa1147870:CDS
GCGTCATATTTCTTACCAGA+AGG 0.583556 7_4:-27378109 None:intergenic
CGCAGTGGTTCATTGTGCAA+CGG 0.584166 7_4:+27378129 Msa1147870:CDS
AACTCGACGGAAGTGGTGAG+CGG 0.589128 7_4:+27377906 Msa1147870:CDS
CAAGCACTCACCAAATCCAT+AGG 0.589785 7_4:+27377878 Msa1147870:CDS
AGAGCTGTTAGACCGGCGAC+AGG 0.591885 7_4:-27377854 None:intergenic
ACAGCTGCATCAGGTGGTGT+AGG 0.593635 7_4:+27377944 Msa1147870:CDS
GTCAACATTGAAGTAGAGCT+AGG 0.594837 7_4:-27378214 None:intergenic
TAACTTGAACACGAATGGTA+AGG 0.595964 7_4:+27378177 Msa1147870:CDS
GAGGTCATGGAGGTTGGCAA+AGG 0.596213 7_4:+27377248 Msa1147870:CDS
GCAGTTCAATTAGCAAAGCT+AGG 0.598271 7_4:+27377974 Msa1147870:CDS
GGTATATATGGGAACTTGGG+AGG 0.598419 7_4:-27376370 None:intergenic
GGCAGTGGATCCTCCACCAT+AGG 0.599133 7_4:-27374762 None:intergenic
GTTCAGTACTATGCCTATGG+TGG 0.599990 7_4:+27374749 Msa1147870:CDS
TCCATAGGAATCAAACTCGA+CGG 0.609909 7_4:+27377893 Msa1147870:CDS
TTGATCACAGCTGCATCAGG+TGG 0.613019 7_4:+27377938 Msa1147870:CDS
ATTGTGCAACGGATATTGCA+TGG 0.613154 7_4:+27378140 Msa1147870:CDS
CCATCTTCAGCCTTAGCTAG+AGG 0.614800 7_4:-27378373 None:intergenic
AGGTACTGATGTAGCAGGAG+AGG 0.620397 7_4:+27377229 Msa1147870:intron
TCAGATGCTGAGATTTCTGG+TGG 0.635883 7_4:-27377818 None:intergenic
AAGTACAGAAACGCATGTTG+TGG 0.646892 7_4:+27376338 Msa1147870:CDS
GTATTGATGGTCATGCAACT+GGG 0.661439 7_4:+27378407 Msa1147870:CDS
CAGCGAGAGAGTGAGTGTGT+AGG 0.665809 7_4:-27374697 None:intergenic
ACACACTCACTCTCTCGCTG+TGG 0.671473 7_4:+27374700 Msa1147870:five_prime_UTR
TGGTAAGAAATATGACGCAG+TGG 0.679832 7_4:+27378114 Msa1147870:CDS
GATTTCTGGTGGTATTGAAG+CGG 0.693223 7_4:-27377807 None:intergenic
ACTCATGTAACAGCCACCTG+CGG 0.721402 7_4:+27378001 Msa1147870:CDS
TGTAGCAGGAGAGGTCATGG+AGG 0.747398 7_4:+27377238 Msa1147870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTATTTATAAATGTGATT+TGG + chr7_4:27374852-27374871 Msa1147870:intron 15.0%
!! TGTATTTATAAATGTGATTT+GGG + chr7_4:27374853-27374872 Msa1147870:intron 15.0%
!!! GTTTTTATAATAAGCTATAT+TGG - chr7_4:27375541-27375560 None:intergenic 15.0%
!! TATATTTGATTCTTAAGATA+TGG - chr7_4:27376063-27376082 None:intergenic 15.0%
!! AAAATATTTCAATATGATGT+AGG + chr7_4:27376120-27376139 Msa1147870:intron 15.0%
!! AAAATTAATATATAGTGAGA+GGG - chr7_4:27376410-27376429 None:intergenic 15.0%
!! AATACGTTATTTAGTATAAA+GGG + chr7_4:27376661-27376680 Msa1147870:intron 15.0%
!! CAAATATTTGTAATAAACAA+GGG - chr7_4:27377174-27377193 None:intergenic 15.0%
!! TCAAATATTTGTAATAAACA+AGG - chr7_4:27377175-27377194 None:intergenic 15.0%
!!! ATTGATGAATCTATTTTTAA+GGG + chr7_4:27377355-27377374 Msa1147870:intron 15.0%
!! TGATGATTACATTTAGATTA+GGG + chr7_4:27374921-27374940 Msa1147870:intron 20.0%
!! ATGTTTATAATTAGTGATCA+AGG + chr7_4:27375003-27375022 Msa1147870:intron 20.0%
!!! AGTTCATTAGTTCTATATTA+AGG + chr7_4:27375390-27375409 Msa1147870:intron 20.0%
!!! GTTCATTAGTTCTATATTAA+GGG + chr7_4:27375391-27375410 Msa1147870:intron 20.0%
!!! TTGTTTAACTTAACAACTTA+GGG - chr7_4:27375781-27375800 None:intergenic 20.0%
!!! ATTGTTTAACTTAACAACTT+AGG - chr7_4:27375782-27375801 None:intergenic 20.0%
!! AAGTTGTTAAGTTAAACAAT+AGG + chr7_4:27375782-27375801 Msa1147870:intron 20.0%
!!! TCATATTGAAATATTTTGTG+AGG - chr7_4:27376117-27376136 None:intergenic 20.0%
!!! ACTACTAATTTTTTTGTCAT+TGG - chr7_4:27376186-27376205 None:intergenic 20.0%
!!! AGATGAAGTTTTGATAAAAT+TGG + chr7_4:27376285-27376304 Msa1147870:CDS 20.0%
!! CAAAATTAATATATAGTGAG+AGG - chr7_4:27376411-27376430 None:intergenic 20.0%
!!! TGTCAAAGATTTAAGATTTT+TGG + chr7_4:27376429-27376448 Msa1147870:intron 20.0%
!! TTATACTAAATAACGTATTG+TGG - chr7_4:27376660-27376679 None:intergenic 20.0%
!! CAATACGTTATTTAGTATAA+AGG + chr7_4:27376660-27376679 Msa1147870:intron 20.0%
!! ATTATACTGCATTCTATAAT+AGG + chr7_4:27377209-27377228 Msa1147870:intron 20.0%
!! AAATAGATTCATCAATGAAA+TGG - chr7_4:27377351-27377370 None:intergenic 20.0%
!!! CATTGATGAATCTATTTTTA+AGG + chr7_4:27377354-27377373 Msa1147870:intron 20.0%
!!! TGAGTCATGAAATTTTATTA+TGG + chr7_4:27377735-27377754 Msa1147870:intron 20.0%
!! ATTTATAAATGTGATTTGGG+TGG + chr7_4:27374856-27374875 Msa1147870:intron 25.0%
! CTGATGATTACATTTAGATT+AGG + chr7_4:27374920-27374939 Msa1147870:intron 25.0%
! GATGATTACATTTAGATTAG+GGG + chr7_4:27374922-27374941 Msa1147870:intron 25.0%
! GTTCTAACTTAACATAAGAT+TGG - chr7_4:27375293-27375312 None:intergenic 25.0%
! AGTTAGAACAACATTGTTAT+AGG + chr7_4:27375304-27375323 Msa1147870:intron 25.0%
!! CATGATGAGAATGTATATTT+TGG - chr7_4:27375344-27375363 None:intergenic 25.0%
! CAAAATATACATTCTCATCA+TGG + chr7_4:27375342-27375361 Msa1147870:intron 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr7_4:27375449-27375468 Msa1147870:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG + chr7_4:27375450-27375469 Msa1147870:intron 25.0%
! GTGATTATGTTAACAACTTA+GGG - chr7_4:27375702-27375721 None:intergenic 25.0%
! AGTGATTATGTTAACAACTT+AGG - chr7_4:27375703-27375722 None:intergenic 25.0%
! ACATTGGTATCAAAATTATC+TGG + chr7_4:27375838-27375857 Msa1147870:intron 25.0%
! TGATTCTTAAGATATGGATA+TGG - chr7_4:27376057-27376076 None:intergenic 25.0%
! ATCAAAACTTCATCTTTACT+AGG - chr7_4:27376280-27376299 None:intergenic 25.0%
! CTAGTATAAATCCATTTGAT+TGG + chr7_4:27376314-27376333 Msa1147870:CDS 25.0%
!!! TTGAACAAACTGCTATTTTT+CGG + chr7_4:27376729-27376748 Msa1147870:intron 25.0%
!!! GGTATTTTGAATCAGAAAAA+AGG + chr7_4:27377666-27377685 Msa1147870:intron 25.0%
!! GAAATTTTATTATGGTAGAG+TGG + chr7_4:27377743-27377762 Msa1147870:intron 25.0%
! ATTGACTATAAAACACCAAT+TGG + chr7_4:27378070-27378089 Msa1147870:CDS 25.0%
AAGAAGTAGAAGAACCTTTA+AGG - chr7_4:27374786-27374805 None:intergenic 30.0%
! TTTAAAACCTTGATCAAGGT+GGG - chr7_4:27375126-27375145 None:intergenic 30.0%
!!! TTTTAAAACCTTGATCAAGG+TGG - chr7_4:27375127-27375146 None:intergenic 30.0%
!!! GCATTTTAAAACCTTGATCA+AGG - chr7_4:27375130-27375149 None:intergenic 30.0%
! ATTTTTGCGGAAATTACAGT+CGG + chr7_4:27375166-27375185 Msa1147870:intron 30.0%
AGAAAAAAACTCACAATCAC+CGG - chr7_4:27375268-27375287 None:intergenic 30.0%
!! GATGAGAATGTATATTTTGG+TGG - chr7_4:27375341-27375360 None:intergenic 30.0%
GTTTATGTATAAGCTTGCAT+AGG - chr7_4:27375621-27375640 None:intergenic 30.0%
AACAAGTTGTTTATCCAAAC+AGG + chr7_4:27375676-27375695 Msa1147870:intron 30.0%
TTCTGTACTTTCCAATCAAA+TGG - chr7_4:27376328-27376347 None:intergenic 30.0%
GGAAGTTACATGGTATATAT+GGG - chr7_4:27376384-27376403 None:intergenic 30.0%
AGGAAGTTACATGGTATATA+TGG - chr7_4:27376385-27376404 None:intergenic 30.0%
TAATATATAGTGAGAGGGAA+AGG - chr7_4:27376405-27376424 None:intergenic 30.0%
! TTTTGAATTAGATGCGAGAA+AGG - chr7_4:27376785-27376804 None:intergenic 30.0%
TTCATGTAGTAGAAGTTCTT+TGG + chr7_4:27376811-27376830 Msa1147870:intron 30.0%
TTAATCAGAAGCTCAATACA+TGG + chr7_4:27376884-27376903 Msa1147870:intron 30.0%
AAGTTTATACACCAATTGGT+GGG + chr7_4:27377100-27377119 Msa1147870:intron 30.0%
!!! AATCTATTTTTAAGGGCTGT+TGG + chr7_4:27377362-27377381 Msa1147870:intron 30.0%
AAAAGAATGTTTCCGATGAA+AGG - chr7_4:27377548-27377567 None:intergenic 30.0%
! TTCATCGGAAACATTCTTTT+CGG + chr7_4:27377548-27377567 Msa1147870:intron 30.0%
! CATTCTTTTCGGAATTTTCT+CGG + chr7_4:27377559-27377578 Msa1147870:intron 30.0%
!! CTTTCAGTTTTTAAGGGTTA+CGG + chr7_4:27377595-27377614 Msa1147870:intron 30.0%
!! TTTTAAGGGTTACGGTTAAA+CGG + chr7_4:27377603-27377622 Msa1147870:intron 30.0%
!! GCTTGTTTTCTGTTTCTTTT+TGG + chr7_4:27377645-27377664 Msa1147870:intron 30.0%
! ATTTTATTATGGTAGAGTGG+TGG + chr7_4:27377746-27377765 Msa1147870:intron 30.0%
ATGGAAATTGTCAAAAGCTT+AGG + chr7_4:27378034-27378053 Msa1147870:CDS 30.0%
CTCTTTAATTCAACACCAAT+TGG - chr7_4:27378088-27378107 None:intergenic 30.0%
!! CTTGTTGATTTGATTAAGCA+AGG + chr7_4:27378319-27378338 Msa1147870:CDS 30.0%
CACTTTCTGTTTGTTCCAAT+TGG + chr7_4:27374658-27374677 Msa1147870:five_prime_UTR 35.0%
CCACAAAGTATGATACCAAT+TGG - chr7_4:27374676-27374695 None:intergenic 35.0%
CCAATTGGTATCATACTTTG+TGG + chr7_4:27374673-27374692 Msa1147870:five_prime_UTR 35.0%
GATTACATTTAGATTAGGGG+AGG + chr7_4:27374925-27374944 Msa1147870:intron 35.0%
! CGGATTAAAGGGTTCTAATA+TGG - chr7_4:27375078-27375097 None:intergenic 35.0%
!! GGTTTAGCTAACGGATTAAA+GGG - chr7_4:27375089-27375108 None:intergenic 35.0%
!! TGGTTTAGCTAACGGATTAA+AGG - chr7_4:27375090-27375109 None:intergenic 35.0%
!!! AATGTATATTTTGGTGGAGG+AGG - chr7_4:27375335-27375354 None:intergenic 35.0%
!!! GAGAATGTATATTTTGGTGG+AGG - chr7_4:27375338-27375357 None:intergenic 35.0%
TTCTATATTAAGGGCCTGTT+TGG + chr7_4:27375400-27375419 Msa1147870:intron 35.0%
GCTAATAAGACAATCCAAAC+AGG - chr7_4:27375417-27375436 None:intergenic 35.0%
AACAAGCTGTTTATCCAAAC+TGG + chr7_4:27375755-27375774 Msa1147870:intron 35.0%
ATGTGAAAAATTGTACTCCC+TGG + chr7_4:27375811-27375830 Msa1147870:intron 35.0%
TGTGAAAAATTGTACTCCCT+GGG + chr7_4:27375812-27375831 Msa1147870:intron 35.0%
TTGATACCAATGTAATCCCA+GGG - chr7_4:27375831-27375850 None:intergenic 35.0%
TTTGATACCAATGTAATCCC+AGG - chr7_4:27375832-27375851 None:intergenic 35.0%
! CATGCTGATTGTGATAAGTT+AGG - chr7_4:27375888-27375907 None:intergenic 35.0%
AACTTATCACAATCAGCATG+TGG + chr7_4:27375888-27375907 Msa1147870:intron 35.0%
AGATAGACTAAGAACCATCA+CGG + chr7_4:27376016-27376035 Msa1147870:intron 35.0%
! GATATGGATATGGACTATGA+AGG - chr7_4:27376047-27376066 None:intergenic 35.0%
! TCTTTACTAGGACTTGGTAT+TGG - chr7_4:27376268-27376287 None:intergenic 35.0%
ACTTCATCTTTACTAGGACT+TGG - chr7_4:27376274-27376293 None:intergenic 35.0%
CATGGTATATATGGGAACTT+GGG - chr7_4:27376376-27376395 None:intergenic 35.0%
ACATGGTATATATGGGAACT+TGG - chr7_4:27376377-27376396 None:intergenic 35.0%
AACAGATTCTTGTCAAATGC+AGG - chr7_4:27376479-27376498 None:intergenic 35.0%
GATCACAATGTTGTCAATCT+CGG - chr7_4:27376758-27376777 None:intergenic 35.0%
CTCGCATCTAATTCAAAACA+TGG + chr7_4:27376787-27376806 Msa1147870:intron 35.0%
AAGACAGAGTTTGAATGACT+TGG - chr7_4:27377048-27377067 None:intergenic 35.0%
CTGCAAGTTTATACACCAAT+TGG + chr7_4:27377096-27377115 Msa1147870:intron 35.0%
CAAGTTTATACACCAATTGG+TGG + chr7_4:27377099-27377118 Msa1147870:intron 35.0%
!! ATAATAGGTACTGATGTAGC+AGG + chr7_4:27377224-27377243 Msa1147870:intron 35.0%
GGTGTTAAGAAGTTCAAAAC+TGG + chr7_4:27377269-27377288 Msa1147870:CDS 35.0%
AAAACTGGTGACAAAGTTGT+AGG + chr7_4:27377284-27377303 Msa1147870:CDS 35.0%
CAGTTGACAACATGAAATCA+AGG - chr7_4:27377445-27377464 None:intergenic 35.0%
ATGAAAGGACACAGGTTAAA+GGG - chr7_4:27377533-27377552 None:intergenic 35.0%
TTTAACCTGTGTCCTTTCAT+CGG + chr7_4:27377533-27377552 Msa1147870:intron 35.0%
! AGCTCAGCTTTCAGTTTTTA+AGG + chr7_4:27377588-27377607 Msa1147870:intron 35.0%
! GCTCAGCTTTCAGTTTTTAA+GGG + chr7_4:27377589-27377608 Msa1147870:intron 35.0%
!! AGCTGAGTTTGCTGTTATTA+AGG + chr7_4:27377775-27377794 Msa1147870:CDS 35.0%
GAGTTTGATTCCTATGGATT+TGG - chr7_4:27377891-27377910 None:intergenic 35.0%
GTTGAATTAAAGAGTCCTTC+TGG + chr7_4:27378094-27378113 Msa1147870:CDS 35.0%
! TTACCATTCGTGTTCAAGTT+AGG - chr7_4:27378178-27378197 None:intergenic 35.0%
TAACTTGAACACGAATGGTA+AGG + chr7_4:27378177-27378196 Msa1147870:CDS 35.0%
!!! CACAAGTTGTTTTTTGGAGA+AGG - chr7_4:27378260-27378279 None:intergenic 35.0%
!!! CAAAGGCACAAGTTGTTTTT+TGG - chr7_4:27378266-27378285 None:intergenic 35.0%
CCTTTGCTTCTAATTCCAAA+GGG + chr7_4:27378280-27378299 Msa1147870:CDS 35.0%
!! TAGAAGAACCTTTAAGGCAG+TGG - chr7_4:27374780-27374799 None:intergenic 40.0%
CCAATTGCAGTCTGTACATA+TGG - chr7_4:27374981-27375000 None:intergenic 40.0%
CCATATGTACAGACTGCAAT+TGG + chr7_4:27374978-27374997 Msa1147870:intron 40.0%
! AAAGGGTTCTAATATGGCGA+GGG - chr7_4:27375072-27375091 None:intergenic 40.0%
! TAAAGGGTTCTAATATGGCG+AGG - chr7_4:27375073-27375092 None:intergenic 40.0%
!!! CGTGTGTGTCGTTATTTTTG+CGG + chr7_4:27375153-27375172 Msa1147870:intron 40.0%
AAGCCAGATGACCAAAACTA+TGG + chr7_4:27375191-27375210 Msa1147870:intron 40.0%
!!! TGACCATAGTTTTGGTCATC+TGG - chr7_4:27375197-27375216 None:intergenic 40.0%
! TGTCTCTCTGACCATAGTTT+TGG - chr7_4:27375205-27375224 None:intergenic 40.0%
TTAACAACTTAGGGCCTGTT+TGG - chr7_4:27375693-27375712 None:intergenic 40.0%
TTAACAACTTAGGGCCAGTT+TGG - chr7_4:27375772-27375791 None:intergenic 40.0%
AAATTTCGTCACGTGTCATC+TGG + chr7_4:27375973-27375992 Msa1147870:intron 40.0%
AAGTACAGAAACGCATGTTG+TGG + chr7_4:27376338-27376357 Msa1147870:CDS 40.0%
AGATTCTTGTCAAATGCAGG+TGG - chr7_4:27376476-27376495 None:intergenic 40.0%
TGTAATAAACAAGGGAAGCC+CGG - chr7_4:27377166-27377185 None:intergenic 40.0%
!! AATGAAATGGACTGAGTAGC+CGG - chr7_4:27377338-27377357 None:intergenic 40.0%
TAAAGGGTTGAAACTCCAAG+TGG - chr7_4:27377517-27377536 None:intergenic 40.0%
GATGAAAGGACACAGGTTAA+AGG - chr7_4:27377534-27377553 None:intergenic 40.0%
AAAACTGAAAGCTGAGCTGA+CGG - chr7_4:27377586-27377605 None:intergenic 40.0%
TTATTATGGTAGAGTGGTGG+AGG + chr7_4:27377749-27377768 Msa1147870:intron 40.0%
!! GATTTCTGGTGGTATTGAAG+CGG - chr7_4:27377810-27377829 None:intergenic 40.0%
CATTCAGATGCTGAGATTTC+TGG - chr7_4:27377824-27377843 None:intergenic 40.0%
TCCATAGGAATCAAACTCGA+CGG + chr7_4:27377893-27377912 Msa1147870:CDS 40.0%
!! ATTTTGATCACAGCTGCATC+AGG + chr7_4:27377935-27377954 Msa1147870:CDS 40.0%
GCAGTTCAATTAGCAAAGCT+AGG + chr7_4:27377974-27377993 Msa1147870:CDS 40.0%
GCGTCATATTTCTTACCAGA+AGG - chr7_4:27378112-27378131 None:intergenic 40.0%
TGGTAAGAAATATGACGCAG+TGG + chr7_4:27378114-27378133 Msa1147870:CDS 40.0%
ATTGTGCAACGGATATTGCA+TGG + chr7_4:27378140-27378159 Msa1147870:CDS 40.0%
GTCAACATTGAAGTAGAGCT+AGG - chr7_4:27378217-27378236 None:intergenic 40.0%
GCCTTTGCTTCTAATTCCAA+AGG + chr7_4:27378279-27378298 Msa1147870:CDS 40.0%
!! CCCTTTGGAATTAGAAGCAA+AGG - chr7_4:27378283-27378302 None:intergenic 40.0%
GCTTCTAATTCCAAAGGGTA+AGG + chr7_4:27378285-27378304 Msa1147870:CDS 40.0%
AACTGAAGATCCTTACCCTT+TGG - chr7_4:27378298-27378317 None:intergenic 40.0%
CTCCAAATTTCCTCTAGCTA+AGG + chr7_4:27378363-27378382 Msa1147870:CDS 40.0%
AGCCTTAGCTAGAGGAAATT+TGG - chr7_4:27378368-27378387 None:intergenic 40.0%
!! GGTTGGTCTAAGAGTATTGA+TGG + chr7_4:27378394-27378413 Msa1147870:CDS 40.0%
!! AGTATTGATGGTCATGCAAC+TGG + chr7_4:27378406-27378425 Msa1147870:CDS 40.0%
! GTATTGATGGTCATGCAACT+GGG + chr7_4:27378407-27378426 Msa1147870:CDS 40.0%
GCTGTTCAGTACTATGCCTA+TGG + chr7_4:27374746-27374765 Msa1147870:CDS 45.0%
GTTCAGTACTATGCCTATGG+TGG + chr7_4:27374749-27374768 Msa1147870:CDS 45.0%
! ATTAGGGGAGGCACATTTGT+TGG + chr7_4:27374937-27374956 Msa1147870:intron 45.0%
GGCTCACTTGGTTTAGCTAA+CGG - chr7_4:27375098-27375117 None:intergenic 45.0%
!!! GACAGCTTTTAAAACCTCGC+CGG + chr7_4:27375246-27375265 Msa1147870:intron 45.0%
TGTACTCCCTGGGATTACAT+TGG + chr7_4:27375822-27375841 Msa1147870:intron 45.0%
CTATGAAGGTGAATCCGTGA+TGG - chr7_4:27376033-27376052 None:intergenic 45.0%
GGTATATATGGGAACTTGGG+AGG - chr7_4:27376373-27376392 None:intergenic 45.0%
GAGAGGGAAAGGAAGTTACA+TGG - chr7_4:27376394-27376413 None:intergenic 45.0%
CCGGCTAAGAACTTACAAAG+GGG - chr7_4:27377319-27377338 None:intergenic 45.0%
CCCCTTTGTAAGTTCTTAGC+CGG + chr7_4:27377316-27377335 Msa1147870:intron 45.0%
GCCGGCTAAGAACTTACAAA+GGG - chr7_4:27377320-27377339 None:intergenic 45.0%
AGCCGGCTAAGAACTTACAA+AGG - chr7_4:27377321-27377340 None:intergenic 45.0%
ACTTCAGATTCCAAGCCACT+TGG + chr7_4:27377499-27377518 Msa1147870:intron 45.0%
TGTTTCCGATGAAAGGACAC+AGG - chr7_4:27377541-27377560 None:intergenic 45.0%
AAACTGAAAGCTGAGCTGAC+GGG - chr7_4:27377585-27377604 None:intergenic 45.0%
ACGGTTGAAACTCCAAGTCA+AGG + chr7_4:27377622-27377641 Msa1147870:intron 45.0%
CGGTTGAAACTCCAAGTCAA+GGG + chr7_4:27377623-27377642 Msa1147870:intron 45.0%
CAGAAAACAAGCCCTTGACT+TGG - chr7_4:27377637-27377656 None:intergenic 45.0%
! TCAGATGCTGAGATTTCTGG+TGG - chr7_4:27377821-27377840 None:intergenic 45.0%
!! CTATGGATTTGGTGAGTGCT+TGG - chr7_4:27377880-27377899 None:intergenic 45.0%
CAAGCACTCACCAAATCCAT+AGG + chr7_4:27377878-27377897 Msa1147870:CDS 45.0%
TCCGTCGAGTTTGATTCCTA+TGG - chr7_4:27377897-27377916 None:intergenic 45.0%
CAAAAGCTTAGGAGCTGATG+AGG + chr7_4:27378045-27378064 Msa1147870:CDS 45.0%
GAGCCTAACTTGAACACGAA+TGG + chr7_4:27378172-27378191 Msa1147870:CDS 45.0%
TAGCTAAGGCTGAAGATGGT+TGG + chr7_4:27378377-27378396 Msa1147870:CDS 45.0%
CAGTACTATGCCTATGGTGG+AGG + chr7_4:27374752-27374771 Msa1147870:CDS 50.0%
TGGAGGATCCACTGCCTTAA+AGG + chr7_4:27374769-27374788 Msa1147870:CDS 50.0%
! GGCACATTTGTTGGTGTGAG+CGG + chr7_4:27374946-27374965 Msa1147870:intron 50.0%
! CATTTGTTGGTGTGAGCGGA+AGG + chr7_4:27374950-27374969 Msa1147870:intron 50.0%
AAAACTCACAATCACCGGCG+AGG - chr7_4:27375263-27375282 None:intergenic 50.0%
GGGAACTTGGGAGGCAAAAA+TGG - chr7_4:27376364-27376383 None:intergenic 50.0%
CTAAAGCTCCCGCATACACA+GGG - chr7_4:27377139-27377158 None:intergenic 50.0%
!! AGGTACTGATGTAGCAGGAG+AGG + chr7_4:27377229-27377248 Msa1147870:intron 50.0%
TGATGTAGCAGGAGAGGTCA+TGG + chr7_4:27377235-27377254 Msa1147870:CDS 50.0%
GGTTGAAACTCCAAGTGGCT+TGG - chr7_4:27377512-27377531 None:intergenic 50.0%
ATCTCAGCATCTGAATGCGC+CGG + chr7_4:27377827-27377846 Msa1147870:CDS 50.0%
TGCTTGGAGAGCTGTTAGAC+CGG - chr7_4:27377864-27377883 None:intergenic 50.0%
GGAATCAAACTCGACGGAAG+TGG + chr7_4:27377899-27377918 Msa1147870:CDS 50.0%
TTGATCACAGCTGCATCAGG+TGG + chr7_4:27377938-27377957 Msa1147870:CDS 50.0%
ACTCATGTAACAGCCACCTG+CGG + chr7_4:27378001-27378020 Msa1147870:CDS 50.0%
CGCAGTGGTTCATTGTGCAA+CGG + chr7_4:27378129-27378148 Msa1147870:CDS 50.0%
CCATCTTCAGCCTTAGCTAG+AGG - chr7_4:27378376-27378395 None:intergenic 50.0%
CCTCTAGCTAAGGCTGAAGA+TGG + chr7_4:27378373-27378392 Msa1147870:CDS 50.0%
CAGCGAGAGAGTGAGTGTGT+AGG - chr7_4:27374700-27374719 None:intergenic 55.0%
ACACACTCACTCTCTCGCTG+TGG + chr7_4:27374700-27374719 Msa1147870:five_prime_UTR 55.0%
TCACTCTCTCGCTGTGGACA+TGG + chr7_4:27374706-27374725 Msa1147870:exon 55.0%
CCTTGATCAAGGTGGGTGAG+CGG - chr7_4:27375119-27375138 None:intergenic 55.0%
CATACACAGGGTTCGGGAAG+GGG - chr7_4:27377127-27377146 None:intergenic 55.0%
GCATACACAGGGTTCGGGAA+GGG - chr7_4:27377128-27377147 None:intergenic 55.0%
CTTCCCGAACCCTGTGTATG+CGG + chr7_4:27377127-27377146 Msa1147870:intron 55.0%
TTCCCGAACCCTGTGTATGC+GGG + chr7_4:27377128-27377147 Msa1147870:intron 55.0%
CCTAAAGCTCCCGCATACAC+AGG - chr7_4:27377140-27377159 None:intergenic 55.0%
CCTGTGTATGCGGGAGCTTT+AGG + chr7_4:27377137-27377156 Msa1147870:intron 55.0%
!! ATGCGGGAGCTTTAGGTCAC+CGG + chr7_4:27377144-27377163 Msa1147870:intron 55.0%
TGTAGCAGGAGAGGTCATGG+AGG + chr7_4:27377238-27377257 Msa1147870:CDS 55.0%
GAGGTCATGGAGGTTGGCAA+AGG + chr7_4:27377248-27377267 Msa1147870:CDS 55.0%
AACTCGACGGAAGTGGTGAG+CGG + chr7_4:27377906-27377925 Msa1147870:CDS 55.0%
ACAGCTGCATCAGGTGGTGT+AGG + chr7_4:27377944-27377963 Msa1147870:CDS 55.0%
GGCAGTGGATCCTCCACCAT+AGG - chr7_4:27374765-27374784 None:intergenic 60.0%
CCGCTCACCCACCTTGATCA+AGG + chr7_4:27375116-27375135 Msa1147870:intron 60.0%
CGCATACACAGGGTTCGGGA+AGG - chr7_4:27377129-27377148 None:intergenic 60.0%
CTCCCGCATACACAGGGTTC+GGG - chr7_4:27377133-27377152 None:intergenic 60.0%
GCTCCCGCATACACAGGGTT+CGG - chr7_4:27377134-27377153 None:intergenic 60.0%
!! TGCGGGAGCTTTAGGTCACC+GGG + chr7_4:27377145-27377164 Msa1147870:intron 60.0%
GCAGGAGAGGTCATGGAGGT+TGG + chr7_4:27377242-27377261 Msa1147870:CDS 60.0%
TAGACCGGCGACAGGTAAGC+CGG - chr7_4:27377849-27377868 None:intergenic 60.0%
AGAGCTGTTAGACCGGCGAC+AGG - chr7_4:27377857-27377876 None:intergenic 60.0%
! TTCCATGTTTCGAGCGCCGC+AGG - chr7_4:27378020-27378039 None:intergenic 60.0%
AGGTGGGTGAGCGGCTCACT+TGG - chr7_4:27375110-27375129 None:intergenic 65.0%
CGGGAAGGGGTCCCACCAAT+TGG - chr7_4:27377114-27377133 None:intergenic 65.0%
! CATGTTTCGAGCGCCGCAGG+TGG - chr7_4:27378017-27378036 None:intergenic 65.0%
CACCTGCGGCGCTCGAAACA+TGG + chr7_4:27378015-27378034 Msa1147870:CDS 65.0%
!! TGCGCCGGCTTACCTGTCGC+CGG + chr7_4:27377842-27377861 Msa1147870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27374647 27378646 27374647 ID=Msa1147870;Name=Msa1147870
chr7_4 mRNA 27374647 27378646 27374647 ID=Msa1147870-mRNA-1;Parent=Msa1147870;Name=Msa1147870-mRNA-1;_AED=0.07;_eAED=0.07;_QI=78|1|1|1|1|1|4|196|329
chr7_4 exon 27374647 27374790 27374647 ID=Msa1147870-mRNA-1:exon:6704;Parent=Msa1147870-mRNA-1
chr7_4 exon 27376253 27376394 27376253 ID=Msa1147870-mRNA-1:exon:6705;Parent=Msa1147870-mRNA-1
chr7_4 exon 27377231 27377322 27377231 ID=Msa1147870-mRNA-1:exon:6706;Parent=Msa1147870-mRNA-1
chr7_4 exon 27377761 27378646 27377761 ID=Msa1147870-mRNA-1:exon:6707;Parent=Msa1147870-mRNA-1
chr7_4 five_prime_UTR 27374647 27374724 27374647 ID=Msa1147870-mRNA-1:five_prime_utr;Parent=Msa1147870-mRNA-1
chr7_4 CDS 27374725 27374790 27374725 ID=Msa1147870-mRNA-1:cds;Parent=Msa1147870-mRNA-1
chr7_4 CDS 27376253 27376394 27376253 ID=Msa1147870-mRNA-1:cds;Parent=Msa1147870-mRNA-1
chr7_4 CDS 27377231 27377322 27377231 ID=Msa1147870-mRNA-1:cds;Parent=Msa1147870-mRNA-1
chr7_4 CDS 27377761 27378450 27377761 ID=Msa1147870-mRNA-1:cds;Parent=Msa1147870-mRNA-1
chr7_4 three_prime_UTR 27378451 27378646 27378451 ID=Msa1147870-mRNA-1:three_prime_utr;Parent=Msa1147870-mRNA-1
Gene Sequence

>Msa1147870

ATGGAGAACAAACTCATGCGTGCTGTTCAGTACTATGCCTATGGTGGAGGATCCACTGCCTTAAAGCATGTTGACGTGCCAATACCAAGTCCTAGTAAAGATGAAGTTTTGATAAAATTGGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCATTTTTGCCTCCCAAGTTCCCATATATACCATGTACTGATGTAGCAGGAGAGGTCATGGAGGTTGGCAAAGGTGTTAAGAAGTTCAAAACTGGTGACAAAGTTGTAGGCGTAGTCAGCCCCTTTAGTGGTGGAGGACTAGCTGAGTTTGCTGTTATTAAGGAGAGTCTCACCGCTTCAATACCACCAGAAATCTCAGCATCTGAATGCGCCGGCTTACCTGTCGCCGGTCTAACAGCTCTCCAAGCACTCACCAAATCCATAGGAATCAAACTCGACGGAAGTGGTGAGCGGAAAAACATTTTGATCACAGCTGCATCAGGTGGTGTAGGACACTATGCAGTTCAATTAGCAAAGCTAGGTAACACTCATGTAACAGCCACCTGCGGCGCTCGAAACATGGAAATTGTCAAAAGCTTAGGAGCTGATGAGGTAATTGACTATAAAACACCAATTGGTGTTGAATTAAAGAGTCCTTCTGGTAAGAAATATGACGCAGTGGTTCATTGTGCAACGGATATTGCATGGTCAGTTTTTGAGCCTAACTTGAACACGAATGGTAAGGTTGTAGATATAACTCCTAGCTCTACTTCAATGTTGACATTTGCTCTTACTAAAATTACCTTCTCCAAAAAACAACTTGTGCCTTTGCTTCTAATTCCAAAGGGTAAGGATCTTCAGTTTCTTGTTGATTTGATTAAGCAAGGAAAGATTAAAACAGTTATAGACTCCAAATTTCCTCTAGCTAAGGCTGAAGATGGTTGGTCTAAGAGTATTGATGGTCATGCAACTGGGAAGATCATTTTTGAGTTTTAA

Protein sequence

>Msa1147870

MENKLMRAVQYYAYGGGSTALKHVDVPIPSPSKDEVLIKLEAASINPFDWKVQKRMLWPFLPPKFPYIPCTDVAGEVMEVGKGVKKFKTGDKVVGVVSPFSGGGLAEFAVIKESLTASIPPEISASECAGLPVAGLTALQALTKSIGIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNMEIVKSLGADEVIDYKTPIGVELKSPSGKKYDAVVHCATDIAWSVFEPNLNTNGKVVDITPSSTSMLTFALTKITFSKKQLVPLLLIPKGKDLQFLVDLIKQGKIKTVIDSKFPLAKAEDGWSKSIDGHATGKIIFEF*