AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1218080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218080 MtrunA17_Chr4g0067721 83.613 238 10 3 1 210 1 237 6.92e-141 393
Msa1218080 MtrunA17_Chr2g0295391 60.550 218 60 1 19 210 71 288 8.19e-92 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218080 AT4G16060.1 58.257 218 65 1 19 210 72 289 1.39e-88 263

Find 74 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCAAGTACTTTGAGAAAA+TGG 0.145102 8_1:+80648459 Msa1218080:CDS
AAATTGTGAACTTTCCTTAT+TGG 0.162625 8_1:+80648733 Msa1218080:three_prime_UTR
GGCACCCCAGCTAGTGATTC+AGG 0.267588 8_1:-80647136 None:intergenic
CGCCGTCTCTTCTCCGTTGT+AGG 0.276680 8_1:+80646551 Msa1218080:CDS
CATACTGCTGGACTGGTAAA+TGG 0.282405 8_1:-80647157 None:intergenic
TGGCGGTTCGGAAGTTAATT+AGG 0.283431 8_1:-80646514 None:intergenic
CGTCATTGCGCCAAATCTTA+TGG 0.285949 8_1:-80647715 None:intergenic
TTTACATATTACAACCAATA+AGG 0.304596 8_1:-80648747 None:intergenic
TGAAGCTTACAATAACTTCT+TGG 0.307664 8_1:+80648402 Msa1218080:CDS
TTCCGAACCGCCAGGTTAAC+TGG 0.308875 8_1:+80646524 Msa1218080:CDS
TACATCTCCATCTGCGGTTA+CGG 0.359911 8_1:+80646379 Msa1218080:CDS
ATTGTTACACCAATTGAATT+CGG 0.362171 8_1:-80646175 None:intergenic
AGGTGCTCTGTTTGTTGTGA+TGG 0.373378 8_1:+80646300 Msa1218080:exon
CTTGGGCCATAGGCTGTTGA+TGG 0.378581 8_1:+80648873 Msa1218080:three_prime_UTR
AAACAAAAGCTCCTCTTACT+TGG 0.381635 8_1:+80648855 Msa1218080:three_prime_UTR
TATATCTAGTGAAAACAATA+AGG 0.391789 8_1:-80648815 None:intergenic
AATACAATATCCATAAGATT+TGG 0.407312 8_1:+80647705 Msa1218080:CDS
AACCAGTTAACCTGGCGGTT+CGG 0.412216 8_1:-80646526 None:intergenic
CGCAAGTACTTTGAGAAAAT+GGG 0.412722 8_1:+80648460 Msa1218080:CDS
CGTATCATCTGATGATCTCT+TGG 0.413270 8_1:+80646324 Msa1218080:CDS
CCATACATGCATATCAATAT+CGG 0.416731 8_1:-80648647 None:intergenic
AGGATAATCAAATTCAGAAA+TGG 0.426232 8_1:-80648558 None:intergenic
ACCAATTGAATTCGGATTGT+CGG 0.430197 8_1:-80646167 None:intergenic
CACCAACAAAACAGAGTAGC+TGG 0.445700 8_1:+80646275 Msa1218080:five_prime_UTR
AACAATTTCTGACCAGACTT+TGG 0.458837 8_1:+80646192 Msa1218080:five_prime_UTR
CAGCCTATGGCCCAAGTAAG+AGG 0.459033 8_1:-80648866 None:intergenic
TCCGACAATCCGAATTCAAT+TGG 0.463436 8_1:+80646166 Msa1218080:five_prime_UTR
TTCTTTAAATTTAGATGTTG+CGG 0.464297 8_1:+80647348 Msa1218080:CDS
CATCAGAGATAACCAAAGTC+TGG 0.476972 8_1:-80646204 None:intergenic
CCGATATTGATATGCATGTA+TGG 0.482384 8_1:+80648647 Msa1218080:three_prime_UTR
GCTCCTCTTACTTGGGCCAT+AGG 0.489360 8_1:+80648863 Msa1218080:three_prime_UTR
ATCTGATGATCTCTTGGCGC+TGG 0.492929 8_1:+80646330 Msa1218080:CDS
AAAATAACATACTGCTGGAC+TGG 0.495139 8_1:-80647164 None:intergenic
GGTGCTCTGTTTGTTGTGAT+GGG 0.499142 8_1:+80646301 Msa1218080:exon
AACCGTCTACGTCACTAGGC+AGG 0.502793 8_1:-80646357 None:intergenic
GTCAAGTGAAATGTAATTTG+TGG 0.503687 8_1:+80648895 Msa1218080:three_prime_UTR
AACAAAAGCTCCTCTTACTT+GGG 0.507157 8_1:+80648856 Msa1218080:three_prime_UTR
TGCGATCAGCAATGAAGGTA+TGG 0.514634 8_1:-80648426 None:intergenic
ACTTGACCATCAACAGCCTA+TGG 0.516362 8_1:-80648879 None:intergenic
TTTCTTTCTTGCAGAGGGAA+GGG 0.518178 8_1:+80647658 Msa1218080:intron
GAGAGAACCGTAACCGCAGA+TGG 0.529391 8_1:-80646386 None:intergenic
GCCGTGTTTATCTTCGACAC+TGG 0.534592 8_1:+80647747 Msa1218080:CDS
CTTAAGATTTCAAGTGGCGG+AGG 0.548457 8_1:+80648924 Msa1218080:three_prime_UTR
TAATTAACTTCCGAACCGCC+AGG 0.549159 8_1:+80646516 Msa1218080:CDS
GCACCCCAGCTAGTGATTCA+GGG 0.553187 8_1:-80647135 None:intergenic
GAAAATGGGCACAAGCATCA+TGG 0.560285 8_1:+80648474 Msa1218080:CDS
ATGTAACCGTCTACGTCACT+AGG 0.560623 8_1:-80646361 None:intergenic
TACGGAGGTTGATCTGCCTA+TGG 0.571545 8_1:+80648529 Msa1218080:exon
CTCCTACAACGGAGAAGAGA+CGG 0.579571 8_1:-80646553 None:intergenic
ATTAAACTTAAGATTTCAAG+TGG 0.581707 8_1:+80648918 Msa1218080:three_prime_UTR
TTTCCCTGAATCACTAGCTG+GGG 0.586678 8_1:+80647132 Msa1218080:CDS
ACCAACAAAACAGAGTAGCT+GGG 0.588052 8_1:+80646276 Msa1218080:five_prime_UTR
TCAGAAATGGAAAACGCCAT+AGG 0.593569 8_1:-80648545 None:intergenic
AATGAGTTATTGCAGTGTCC+TGG 0.604289 8_1:+80648360 Msa1218080:intron
ACGGCGAAAACCAGTTAACC+TGG 0.604333 8_1:-80646534 None:intergenic
ACCGTCTACGTCACTAGGCA+GGG 0.610465 8_1:-80646356 None:intergenic
CATAGCCAACCTCAAAACTC+AGG 0.618116 8_1:+80646595 Msa1218080:CDS
GATCATCTACGGTGGTCGCA+CGG 0.618782 8_1:+80648669 Msa1218080:three_prime_UTR
ATGTGCATCTTACAGTGATG+AGG 0.623093 8_1:+80647323 Msa1218080:CDS
GGTTACGGTTCTCTCCTCTC+CGG 0.623222 8_1:+80646394 Msa1218080:CDS
TAGTTAGTTAGTTACCGGAG+AGG 0.623837 8_1:-80646408 None:intergenic
GTTCGGAAGTTAATTAGGTG+AGG 0.635418 8_1:-80646509 None:intergenic
TGTCGAAGATAAACACGGCA+TGG 0.637854 8_1:-80647743 None:intergenic
ATGCATGTATGGATCATCTA+CGG 0.645924 8_1:+80648658 Msa1218080:three_prime_UTR
AAACTTAAGATTTCAAGTGG+CGG 0.657427 8_1:+80648921 Msa1218080:three_prime_UTR
CCAACAAAACAGAGTAGCTG+GGG 0.665051 8_1:+80646277 Msa1218080:five_prime_UTR
ACAAAACAGAGTAGCTGGGG+AGG 0.669374 8_1:+80646280 Msa1218080:five_prime_UTR
GACGGTTACATCTCCATCTG+CGG 0.683494 8_1:+80646373 Msa1218080:CDS
ACCAGTGTCGAAGATAAACA+CGG 0.717328 8_1:-80647748 None:intergenic
GTCTACGTCACTAGGCAGGG+AGG 0.725563 8_1:-80646353 None:intergenic
TCCCTGCCTAGTGACGTAGA+CGG 0.732148 8_1:+80646355 Msa1218080:CDS
CATGTATGGATCATCTACGG+TGG 0.733401 8_1:+80648661 Msa1218080:three_prime_UTR
TCACAAATCGATAGTACACG+AGG 0.734118 8_1:-80648578 None:intergenic
GCGAAAACCAGTTAACCTGG+CGG 0.779318 8_1:-80646531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTATATTCTTTTT+TGG - chr8_1:80646234-80646253 None:intergenic 10.0%
!! AATTTACTTAATTTATGAAT+AGG - chr8_1:80647219-80647238 None:intergenic 10.0%
!!! GAAATATATTTTAAACAATA+TGG + chr8_1:80647680-80647699 Msa1218080:CDS 10.0%
!!! AATATATTTTAAACAATATG+GGG + chr8_1:80647682-80647701 Msa1218080:CDS 10.0%
!!! TATTTTGTAAAATTAACTAA+TGG + chr8_1:80648336-80648355 Msa1218080:intron 10.0%
!! AAATGATGAAATGATTAATT+AGG - chr8_1:80646461-80646480 None:intergenic 15.0%
!! AATTCATTGATCAAATAATA+AGG - chr8_1:80646647-80646666 None:intergenic 15.0%
!! ATCAAAAACAGTAATTATAA+TGG - chr8_1:80646757-80646776 None:intergenic 15.0%
!! TGAAATTTATTTATATGAAC+TGG + chr8_1:80647407-80647426 Msa1218080:intron 15.0%
!! ATGTGTATATTATTTATGTT+TGG + chr8_1:80647819-80647838 Msa1218080:intron 15.0%
!! TGTGTATATTATTTATGTTT+GGG + chr8_1:80647820-80647839 Msa1218080:intron 15.0%
!! ATATGATTATTGTTCTTAAT+TGG + chr8_1:80648095-80648114 Msa1218080:intron 15.0%
!!! AATTTTACAAAATAACTGTT+CGG - chr8_1:80648330-80648349 None:intergenic 15.0%
!!! TTTTGATATTAAGAAATCAG+AGG + chr8_1:80646770-80646789 Msa1218080:intron 20.0%
!! ATAGATAAAAAGAATTGATC+TGG - chr8_1:80646890-80646909 None:intergenic 20.0%
!! AATCTGTCTTCATAATTAAT+TGG - chr8_1:80646958-80646977 None:intergenic 20.0%
!! GAATTAATTATAAGATGTGA+TGG + chr8_1:80647256-80647275 Msa1218080:intron 20.0%
!! TTCTTTAAATTTAGATGTTG+CGG + chr8_1:80647348-80647367 Msa1218080:CDS 20.0%
!! TAAATAAATTTCACAAGAAC+TGG - chr8_1:80647400-80647419 None:intergenic 20.0%
!! AATACAATATCCATAAGATT+TGG + chr8_1:80647705-80647724 Msa1218080:CDS 20.0%
!! GTGTATATTATTTATGTTTG+GGG + chr8_1:80647821-80647840 Msa1218080:intron 20.0%
!!! TATTTGAAAAACAGATTTTG+AGG + chr8_1:80647901-80647920 Msa1218080:intron 20.0%
!! AATTCCTAATATATCTTCTA+TGG + chr8_1:80648011-80648030 Msa1218080:intron 20.0%
!! AAATCCATAGAAGATATATT+AGG - chr8_1:80648018-80648037 None:intergenic 20.0%
!!! TTATAATTGCATTCTTTTCA+TGG + chr8_1:80648606-80648625 Msa1218080:three_prime_UTR 20.0%
!! TTTACATATTACAACCAATA+AGG - chr8_1:80648750-80648769 None:intergenic 20.0%
!!! GTTTTTGTTTGAATAGATTT+TGG - chr8_1:80648773-80648792 None:intergenic 20.0%
!! TATATCTAGTGAAAACAATA+AGG - chr8_1:80648818-80648837 None:intergenic 20.0%
!! ATTAAACTTAAGATTTCAAG+TGG + chr8_1:80648918-80648937 Msa1218080:three_prime_UTR 20.0%
! ATTGTTACACCAATTGAATT+CGG - chr8_1:80646178-80646197 None:intergenic 25.0%
! AATAATAAGGAGGAGATAAA+AGG - chr8_1:80646634-80646653 None:intergenic 25.0%
! TCATTGATCAAATAATAAGG+AGG - chr8_1:80646644-80646663 None:intergenic 25.0%
! TGATTAATTGCTTCAATGTT+TGG + chr8_1:80646671-80646690 Msa1218080:intron 25.0%
! GATTAATTGCTTCAATGTTT+GGG + chr8_1:80646672-80646691 Msa1218080:intron 25.0%
! ATTGATCTGGTATCTAAAAA+AGG - chr8_1:80646877-80646896 None:intergenic 25.0%
! ATTATTTATACTGTCTCTGT+AGG + chr8_1:80647108-80647127 Msa1218080:intron 25.0%
! GAATTAAAATAACATACTGC+TGG - chr8_1:80647172-80647191 None:intergenic 25.0%
!!! AAGTAAATTGATTTTCTTGC+TGG + chr8_1:80647230-80647249 Msa1218080:intron 25.0%
!!! ATAAGATGTGATGGTTTTTT+TGG + chr8_1:80647265-80647284 Msa1218080:intron 25.0%
!!! TTTTTGGTTTGATGATATTG+TGG + chr8_1:80647281-80647300 Msa1218080:intron 25.0%
!! ATGCATTTTCTGATACAAAT+TGG + chr8_1:80647454-80647473 Msa1218080:intron 25.0%
! AAGAAAGAAAAAAACACAGA+AGG - chr8_1:80647648-80647667 None:intergenic 25.0%
!!! ACAAACATTTTTCTGAAGAT+TGG + chr8_1:80648042-80648061 Msa1218080:intron 25.0%
!!! CAAACATTTTTCTGAAGATT+GGG + chr8_1:80648043-80648062 Msa1218080:intron 25.0%
!!! AAACATTTTTCTGAAGATTG+GGG + chr8_1:80648044-80648063 Msa1218080:intron 25.0%
! AGGATAATCAAATTCAGAAA+TGG - chr8_1:80648561-80648580 None:intergenic 25.0%
! AAATTGTGAACTTTCCTTAT+TGG + chr8_1:80648733-80648752 Msa1218080:three_prime_UTR 25.0%
!! AAACAAAAACTCGTCTTATT+TGG + chr8_1:80648783-80648802 Msa1218080:three_prime_UTR 25.0%
! TTGGTTAGTTAGTTAGTTAC+CGG - chr8_1:80646416-80646435 None:intergenic 30.0%
TATGCCATGATTGAAAAAGA+AGG - chr8_1:80646579-80646598 None:intergenic 30.0%
CACAATCACAATTATCTACA+TGG + chr8_1:80646821-80646840 Msa1218080:intron 30.0%
CTGGTGTAGTAATAATTAGT+TGG - chr8_1:80647381-80647400 None:intergenic 30.0%
!!! TGTTTTTTTCTTTCTTGCAG+AGG + chr8_1:80647652-80647671 Msa1218080:intron 30.0%
!!! GTTTTTTTCTTTCTTGCAGA+GGG + chr8_1:80647653-80647672 Msa1218080:intron 30.0%
ATTGACAGAGAAATGTTACA+AGG + chr8_1:80647963-80647982 Msa1218080:intron 30.0%
TTGACAGAGAAATGTTACAA+GGG + chr8_1:80647964-80647983 Msa1218080:intron 30.0%
!! AACATTTTTCTGAAGATTGG+GGG + chr8_1:80648045-80648064 Msa1218080:intron 30.0%
! CTCATTGTCTTTTCATGATT+TGG + chr8_1:80648124-80648143 Msa1218080:intron 30.0%
! TGTTGTTTAGTCCTTAATTC+AGG + chr8_1:80648188-80648207 Msa1218080:intron 30.0%
TGAAGCTTACAATAACTTCT+TGG + chr8_1:80648402-80648421 Msa1218080:CDS 30.0%
!! TAACGTGTTTTTAAGGATTC+AGG - chr8_1:80648511-80648530 None:intergenic 30.0%
GAATCCTTAAAAACACGTTA+CGG + chr8_1:80648511-80648530 Msa1218080:CDS 30.0%
CCATACATGCATATCAATAT+CGG - chr8_1:80648650-80648669 None:intergenic 30.0%
! CATAGTTTTCTTTTCATGCT+AGG - chr8_1:80648703-80648722 None:intergenic 30.0%
GTCAAGTGAAATGTAATTTG+TGG + chr8_1:80648895-80648914 Msa1218080:three_prime_UTR 30.0%
! AAACTTAAGATTTCAAGTGG+CGG + chr8_1:80648921-80648940 Msa1218080:three_prime_UTR 30.0%
ACCAATTGAATTCGGATTGT+CGG - chr8_1:80646170-80646189 None:intergenic 35.0%
AACAATTTCTGACCAGACTT+TGG + chr8_1:80646192-80646211 Msa1218080:five_prime_UTR 35.0%
!! AAAGAATAAGACGAGTTGGT+TGG - chr8_1:80646435-80646454 None:intergenic 35.0%
! TTTGGGCTTATTCTCTTTTC+AGG + chr8_1:80646689-80646708 Msa1218080:intron 35.0%
AAAATAACATACTGCTGGAC+TGG - chr8_1:80647167-80647186 None:intergenic 35.0%
TCTGATACAAATTGGCATGA+AGG + chr8_1:80647462-80647481 Msa1218080:intron 35.0%
CTGATACAAATTGGCATGAA+GGG + chr8_1:80647463-80647482 Msa1218080:intron 35.0%
TGATACAAATTGGCATGAAG+GGG + chr8_1:80647464-80647483 Msa1218080:intron 35.0%
AACTGTTCTGACAACTAACT+AGG - chr8_1:80647595-80647614 None:intergenic 35.0%
TAGTCCTTAATTCAGGAAAG+AGG + chr8_1:80648195-80648214 Msa1218080:intron 35.0%
AGTCCTTAATTCAGGAAAGA+GGG + chr8_1:80648196-80648215 Msa1218080:intron 35.0%
CACAACTTTATGAGTCAGTT+AGG + chr8_1:80648244-80648263 Msa1218080:intron 35.0%
CTTTCTCCTGATGTAAAAGA+CGG - chr8_1:80648274-80648293 None:intergenic 35.0%
! TCGCAAGTACTTTGAGAAAA+TGG + chr8_1:80648459-80648478 Msa1218080:CDS 35.0%
! CGCAAGTACTTTGAGAAAAT+GGG + chr8_1:80648460-80648479 Msa1218080:CDS 35.0%
CCGATATTGATATGCATGTA+TGG + chr8_1:80648647-80648666 Msa1218080:three_prime_UTR 35.0%
ATGCATGTATGGATCATCTA+CGG + chr8_1:80648658-80648677 Msa1218080:three_prime_UTR 35.0%
AAACAAAAGCTCCTCTTACT+TGG + chr8_1:80648855-80648874 Msa1218080:three_prime_UTR 35.0%
AACAAAAGCTCCTCTTACTT+GGG + chr8_1:80648856-80648875 Msa1218080:three_prime_UTR 35.0%
TCCGACAATCCGAATTCAAT+TGG + chr8_1:80646166-80646185 Msa1218080:five_prime_UTR 40.0%
CATCAGAGATAACCAAAGTC+TGG - chr8_1:80646207-80646226 None:intergenic 40.0%
ACCAACAAAACAGAGTAGCT+GGG + chr8_1:80646276-80646295 Msa1218080:five_prime_UTR 40.0%
CGTATCATCTGATGATCTCT+TGG + chr8_1:80646324-80646343 Msa1218080:CDS 40.0%
TAGTTAGTTAGTTACCGGAG+AGG - chr8_1:80646411-80646430 None:intergenic 40.0%
GCTGAAAGAATAAGACGAGT+TGG - chr8_1:80646439-80646458 None:intergenic 40.0%
GTTCGGAAGTTAATTAGGTG+AGG - chr8_1:80646512-80646531 None:intergenic 40.0%
GAAAAAGAAGGCTCCTACAA+CGG - chr8_1:80646567-80646586 None:intergenic 40.0%
!!! GGAGCCTTCTTTTTCAATCA+TGG + chr8_1:80646572-80646591 Msa1218080:CDS 40.0%
!! TTCTCTTTTCAGGAAGTTGC+TGG + chr8_1:80646699-80646718 Msa1218080:intron 40.0%
! CGCTCTCTTTTGATAAATGC+TGG - chr8_1:80646981-80647000 None:intergenic 40.0%
! TTTTCCCTGAATCACTAGCT+GGG + chr8_1:80647131-80647150 Msa1218080:CDS 40.0%
TATTGTGGTCTCTTCAATGC+AGG + chr8_1:80647296-80647315 Msa1218080:intron 40.0%
ATGTGCATCTTACAGTGATG+AGG + chr8_1:80647323-80647342 Msa1218080:CDS 40.0%
! TTTTCTTTCTTGCAGAGGGA+AGG + chr8_1:80647657-80647676 Msa1218080:intron 40.0%
TTTCTTTCTTGCAGAGGGAA+GGG + chr8_1:80647658-80647677 Msa1218080:intron 40.0%
! ACCAGTGTCGAAGATAAACA+CGG - chr8_1:80647751-80647770 None:intergenic 40.0%
TACTATCGAAGTCGTATTGC+AGG + chr8_1:80648158-80648177 Msa1218080:intron 40.0%
CAACCCTCTTTCCTGAATTA+AGG - chr8_1:80648202-80648221 None:intergenic 40.0%
AATGAGTTATTGCAGTGTCC+TGG + chr8_1:80648360-80648379 Msa1218080:intron 40.0%
! TGTTTTGCGATCAGCAATGA+AGG - chr8_1:80648434-80648453 None:intergenic 40.0%
!! CGTGTTTTTAAGGATTCAGG+AGG - chr8_1:80648508-80648527 None:intergenic 40.0%
TCCTTAAAAACACGTTACGG+AGG + chr8_1:80648514-80648533 Msa1218080:CDS 40.0%
!! ACCTCCGTAACGTGTTTTTA+AGG - chr8_1:80648518-80648537 None:intergenic 40.0%
TCAGAAATGGAAAACGCCAT+AGG - chr8_1:80648548-80648567 None:intergenic 40.0%
TCACAAATCGATAGTACACG+AGG - chr8_1:80648581-80648600 None:intergenic 40.0%
CACCAACAAAACAGAGTAGC+TGG + chr8_1:80646275-80646294 Msa1218080:five_prime_UTR 45.0%
CCAACAAAACAGAGTAGCTG+GGG + chr8_1:80646277-80646296 Msa1218080:five_prime_UTR 45.0%
!! AGGTGCTCTGTTTGTTGTGA+TGG + chr8_1:80646300-80646319 Msa1218080:exon 45.0%
!! GGTGCTCTGTTTGTTGTGAT+GGG + chr8_1:80646301-80646320 Msa1218080:exon 45.0%
ATGTAACCGTCTACGTCACT+AGG - chr8_1:80646364-80646383 None:intergenic 45.0%
TACATCTCCATCTGCGGTTA+CGG + chr8_1:80646379-80646398 Msa1218080:CDS 45.0%
! TGGCGGTTCGGAAGTTAATT+AGG - chr8_1:80646517-80646536 None:intergenic 45.0%
TAATTAACTTCCGAACCGCC+AGG + chr8_1:80646516-80646535 Msa1218080:CDS 45.0%
CATAGCCAACCTCAAAACTC+AGG + chr8_1:80646595-80646614 Msa1218080:CDS 45.0%
!!! CATCACCTGAGTTTTGAGGT+TGG - chr8_1:80646603-80646622 None:intergenic 45.0%
! GAGACATCACCTGAGTTTTG+AGG - chr8_1:80646607-80646626 None:intergenic 45.0%
ATGGTTTCACCTCCTTGACA+AGG - chr8_1:80646738-80646757 None:intergenic 45.0%
CTCTTGCAGCAGATATGTGT+AGG - chr8_1:80647066-80647085 None:intergenic 45.0%
! GTTTTCCCTGAATCACTAGC+TGG + chr8_1:80647130-80647149 Msa1218080:CDS 45.0%
TTTCCCTGAATCACTAGCTG+GGG + chr8_1:80647132-80647151 Msa1218080:CDS 45.0%
!! CATACTGCTGGACTGGTAAA+TGG - chr8_1:80647160-80647179 None:intergenic 45.0%
ATTGGCATGAAGGGGATTGT+TGG + chr8_1:80647472-80647491 Msa1218080:intron 45.0%
CAACTAACTAGGAGCAGCAT+GGG - chr8_1:80647584-80647603 None:intergenic 45.0%
ACAACTAACTAGGAGCAGCA+TGG - chr8_1:80647585-80647604 None:intergenic 45.0%
ACACAGAAGGCAGAGCTATA+AGG - chr8_1:80647635-80647654 None:intergenic 45.0%
CGTCATTGCGCCAAATCTTA+TGG - chr8_1:80647718-80647737 None:intergenic 45.0%
TGTCGAAGATAAACACGGCA+TGG - chr8_1:80647746-80647765 None:intergenic 45.0%
! GGTCTTCCGTCTTTTACATC+AGG + chr8_1:80648265-80648284 Msa1218080:intron 45.0%
TGCGATCAGCAATGAAGGTA+TGG - chr8_1:80648429-80648448 None:intergenic 45.0%
GAAAATGGGCACAAGCATCA+TGG + chr8_1:80648474-80648493 Msa1218080:CDS 45.0%
CATGTATGGATCATCTACGG+TGG + chr8_1:80648661-80648680 Msa1218080:three_prime_UTR 45.0%
ACTTGACCATCAACAGCCTA+TGG - chr8_1:80648882-80648901 None:intergenic 45.0%
! CTTAAGATTTCAAGTGGCGG+AGG + chr8_1:80648924-80648943 Msa1218080:three_prime_UTR 45.0%
!! AATAATTATCAAATTATATT+TGG - chr8_1:80647091-80647110 None:intergenic 5.0%
!!! AAATATATTTTAAACAATAT+GGG + chr8_1:80647681-80647700 Msa1218080:CDS 5.0%
! CCCCAGCTACTCTGTTTTGT+TGG - chr8_1:80646280-80646299 None:intergenic 50.0%
ACAAAACAGAGTAGCTGGGG+AGG + chr8_1:80646280-80646299 Msa1218080:five_prime_UTR 50.0%
ATCTGATGATCTCTTGGCGC+TGG + chr8_1:80646330-80646349 Msa1218080:CDS 50.0%
GACGGTTACATCTCCATCTG+CGG + chr8_1:80646373-80646392 Msa1218080:CDS 50.0%
AACCAGTTAACCTGGCGGTT+CGG - chr8_1:80646529-80646548 None:intergenic 50.0%
GCGAAAACCAGTTAACCTGG+CGG - chr8_1:80646534-80646553 None:intergenic 50.0%
ACGGCGAAAACCAGTTAACC+TGG - chr8_1:80646537-80646556 None:intergenic 50.0%
CTCCTACAACGGAGAAGAGA+CGG - chr8_1:80646556-80646575 None:intergenic 50.0%
CTTGACAAGGCTCAACAGAG+AGG - chr8_1:80646725-80646744 None:intergenic 50.0%
! CTCTCTGTTGAGCCTTGTCA+AGG + chr8_1:80646723-80646742 Msa1218080:intron 50.0%
! TCTGTTGAGCCTTGTCAAGG+AGG + chr8_1:80646726-80646745 Msa1218080:intron 50.0%
GCCGTGTTTATCTTCGACAC+TGG + chr8_1:80647747-80647766 Msa1218080:CDS 50.0%
GTCCTGGCAGCAAAAAGCTT+AGG + chr8_1:80648376-80648395 Msa1218080:CDS 50.0%
! TACGGAGGTTGATCTGCCTA+TGG + chr8_1:80648529-80648548 Msa1218080:exon 50.0%
TCCCTGCCTAGTGACGTAGA+CGG + chr8_1:80646355-80646374 Msa1218080:CDS 55.0%
ACCGTCTACGTCACTAGGCA+GGG - chr8_1:80646359-80646378 None:intergenic 55.0%
AACCGTCTACGTCACTAGGC+AGG - chr8_1:80646360-80646379 None:intergenic 55.0%
GAGAGAACCGTAACCGCAGA+TGG - chr8_1:80646389-80646408 None:intergenic 55.0%
GGTTACGGTTCTCTCCTCTC+CGG + chr8_1:80646394-80646413 Msa1218080:CDS 55.0%
TTCCGAACCGCCAGGTTAAC+TGG + chr8_1:80646524-80646543 Msa1218080:CDS 55.0%
GCACCCCAGCTAGTGATTCA+GGG - chr8_1:80647138-80647157 None:intergenic 55.0%
! CGCCTAAGCTTTTTGCTGCC+AGG - chr8_1:80648381-80648400 None:intergenic 55.0%
GATCATCTACGGTGGTCGCA+CGG + chr8_1:80648669-80648688 Msa1218080:three_prime_UTR 55.0%
GCTCCTCTTACTTGGGCCAT+AGG + chr8_1:80648863-80648882 Msa1218080:three_prime_UTR 55.0%
CAGCCTATGGCCCAAGTAAG+AGG - chr8_1:80648869-80648888 None:intergenic 55.0%
CTTGGGCCATAGGCTGTTGA+TGG + chr8_1:80648873-80648892 Msa1218080:three_prime_UTR 55.0%
GTCTACGTCACTAGGCAGGG+AGG - chr8_1:80646356-80646375 None:intergenic 60.0%
CGCCGTCTCTTCTCCGTTGT+AGG + chr8_1:80646551-80646570 Msa1218080:CDS 60.0%
GGCACCCCAGCTAGTGATTC+AGG - chr8_1:80647139-80647158 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 80646144 80648956 80646144 ID=Msa1218080;Name=Msa1218080
chr8_1 mRNA 80646144 80648956 80646144 ID=Msa1218080-mRNA-1;Parent=Msa1218080;Name=Msa1218080-mRNA-1;_AED=0.16;_eAED=0.16;_QI=175|0.83|1|1|0.66|0.85|7|416|210
chr8_1 exon 80646144 80646415 80646144 ID=Msa1218080-mRNA-1:exon:28302;Parent=Msa1218080-mRNA-1
chr8_1 exon 80646486 80646616 80646486 ID=Msa1218080-mRNA-1:exon:28303;Parent=Msa1218080-mRNA-1
chr8_1 exon 80646975 80647019 80646975 ID=Msa1218080-mRNA-1:exon:28304;Parent=Msa1218080-mRNA-1
chr8_1 exon 80647130 80647174 80647130 ID=Msa1218080-mRNA-1:exon:28305;Parent=Msa1218080-mRNA-1
chr8_1 exon 80647318 80647369 80647318 ID=Msa1218080-mRNA-1:exon:28306;Parent=Msa1218080-mRNA-1
chr8_1 exon 80647672 80647768 80647672 ID=Msa1218080-mRNA-1:exon:28307;Parent=Msa1218080-mRNA-1
chr8_1 exon 80648375 80648956 80648375 ID=Msa1218080-mRNA-1:exon:28308;Parent=Msa1218080-mRNA-1
chr8_1 five_prime_UTR 80646144 80646318 80646144 ID=Msa1218080-mRNA-1:five_prime_utr;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80646319 80646415 80646319 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80646486 80646616 80646486 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80646975 80647019 80646975 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80647130 80647174 80647130 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80647318 80647369 80647318 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80647672 80647768 80647672 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 CDS 80648375 80648540 80648375 ID=Msa1218080-mRNA-1:cds;Parent=Msa1218080-mRNA-1
chr8_1 three_prime_UTR 80648541 80648956 80648541 ID=Msa1218080-mRNA-1:three_prime_utr;Parent=Msa1218080-mRNA-1
Gene Sequence

>Msa1218080

ATGGGCGTATCATCTGATGATCTCTTGGCGCTGGCCTCCCTGCCTAGTGACGTAGACGGTTACATCTCCATCTGCGGTTACGGTTCTCTCCTCTCCGAGAAAAGTGCAAGAAGCACGTTTCCTCACCTAATTAACTTCCGAACCGCCAGGTTAACTGGTTTTCGCCGTCTCTTCTCCGTTGTAGGAGCCTTCTTTTTCAATCATGGCATAGCCAACCTCAAAACTCAGATTCCAGCATTTATCAAAAGAGAGCGCGAATATCGCTTTTTATCTGTTTTCCCTGAATCACTAGCTGGGGTGCCATTTACCAGTCCAGCAGTCATATGTGCATCTTACAGTGATGAGGAATTCTTTAAATTTAGATGTTGCGAGGGAAGGGAAATATATTTTAAACAATATGGGGAATACAATATCCATAAGATTTGGCGCAATGACGTGTTACCATGCCGTGTTTATCTTCGACACTGTGTCCTGGCAGCAAAAAGCTTAGGCGATGAAGCTTACAATAACTTCTTGGACCATACCTTCATTGCTGATCGCAAAACAACAATTCGCAAGTACTTTGAGAAAATGGGCACAAGCATCATGGATGAAGAACCTCCTGAATCCTTAAAAACACGTTACGGAGGTTGA

Protein sequence

>Msa1218080

MGVSSDDLLALASLPSDVDGYISICGYGSLLSEKSARSTFPHLINFRTARLTGFRRLFSVVGAFFFNHGIANLKTQIPAFIKREREYRFLSVFPESLAGVPFTSPAVICASYSDEEFFKFRCCEGREIYFKQYGEYNIHKIWRNDVLPCRVYLRHCVLAAKSLGDEAYNNFLDHTFIADRKTTIRKYFEKMGTSIMDEEPPESLKTRYGG*