AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968970 MtrunA17_Chr3g0109111 96.750 400 9 2 1 396 1 400 0.0 763
Msa0968970 MtrunA17_Chr3g0109101 85.862 290 39 2 75 363 7 295 1.15e-175 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968970 AT3G02690.1 75.915 328 74 2 65 391 89 412 6.74e-167 474

Find 132 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.060471 6_4:-364241 Msa0968970:CDS
GTACTTGCTGCTTTGTTATT+TGG 0.128361 6_4:-363128 Msa0968970:CDS
TAATATCACCGTTCTTCTTT+TGG 0.200999 6_4:-364434 Msa0968970:CDS
ATTGGGAATGCTAGTGCTTT+TGG 0.236775 6_4:-360952 Msa0968970:three_prime_UTR
TACCTTCTGGTTTCAATGCT+TGG 0.281970 6_4:-364287 Msa0968970:CDS
TCTCACCTGTACAGCTTGTT+GGG 0.293813 6_4:-361098 Msa0968970:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.300946 6_4:-364240 Msa0968970:CDS
GCAGAAGACTTCAGCTGGTT+TGG 0.301404 6_4:-364199 Msa0968970:CDS
CAGAAGACTTCAGCTGGTTT+GGG 0.335089 6_4:-364198 Msa0968970:CDS
ATTGGAGTTGTTGGAGCTGC+CGG 0.341031 6_4:-363098 Msa0968970:CDS
GTGCCTTGGGGAAGCGTTAT+GGG 0.347839 6_4:-364469 Msa0968970:CDS
AAAATGGCATGAACTCGAAT+TGG 0.350977 6_4:-360970 Msa0968970:three_prime_UTR
GGTGGATTCTGTTGATTTGC+CGG 0.362199 6_4:+364596 None:intergenic
AGAGGAAGAGCTTTACCTTC+TGG 0.363399 6_4:-364300 Msa0968970:CDS
TGTGCCTTGGGGAAGCGTTA+TGG 0.370312 6_4:-364470 Msa0968970:CDS
GATGGAGTGGTGGAAGAAGT+TGG 0.370796 6_4:+364657 None:intergenic
GGTTGCGGTGACGGCGGTGA+AGG 0.376918 6_4:+364725 None:intergenic
TTCTCACCTGTACAGCTTGT+TGG 0.377272 6_4:-361099 Msa0968970:CDS
CATCGAAGAGACTGTGCCTT+GGG 0.379009 6_4:-364482 Msa0968970:CDS
GGTGAGTCCATTGGAGTTGT+TGG 0.381294 6_4:-363107 Msa0968970:CDS
GGTGGTGGTGGTTGCGGTGA+CGG 0.383927 6_4:+364716 None:intergenic
GGAGCTGCCGGGCTTGTACT+TGG 0.385948 6_4:-363086 Msa0968970:CDS
AAAATTGTATTTACACTGTA+AGG 0.386896 6_4:+360874 None:intergenic
AACAATGAGCCTGCTGTAAG+TGG 0.386921 6_4:-362081 Msa0968970:CDS
AGTTGCTCCCATCAAATGAT+AGG 0.387462 6_4:+362768 None:intergenic
TATTGATTCACAACCTTTGA+CGG 0.403423 6_4:-363156 Msa0968970:CDS
CACAAATGAAATATACATCT+TGG 0.403871 6_4:-360699 Msa0968970:three_prime_UTR
CGAAAATTGAGGCAAACATT+GGG 0.404211 6_4:+361517 None:intergenic
CCTAGCGTAACAGTAATCTA+TGG 0.407940 6_4:+360785 None:intergenic
AGAGTAGCGGCGGGTGGTGG+TGG 0.412700 6_4:+364704 None:intergenic
TTTCAGGGGTTTCTTGCTGA+AGG 0.419771 6_4:-364225 Msa0968970:CDS
CACTGTGGGGAAGTGGGGAG+TGG 0.422259 6_4:-362742 Msa0968970:CDS
TTCCTTCGTCTTCTTCGGTT+AGG 0.426662 6_4:+364523 None:intergenic
ATGGAGTGGTGGAAGAAGTT+GGG 0.436184 6_4:+364658 None:intergenic
CCGAAAATTGAGGCAAACAT+TGG 0.438271 6_4:+361516 None:intergenic
TGTGGGGAAGTGGGGAGTGG+TGG 0.438538 6_4:-362739 Msa0968970:CDS
ACCCATCCAGTTGCCATGAT+AGG 0.438828 6_4:+362647 None:intergenic
GCGGCGGGTGGTGGTGGTTG+CGG 0.441258 6_4:+364710 None:intergenic
TTGGAGTTGTTGGAGCTGCC+GGG 0.442346 6_4:-363097 Msa0968970:CDS
TTACCTGCCCTATCATTTGA+TGG 0.443344 6_4:-362776 Msa0968970:CDS
AACTTCTCACTGTGGGGAAG+TGG 0.443633 6_4:-362749 Msa0968970:CDS
AAATGGCATGAACTCGAATT+GGG 0.452973 6_4:-360969 Msa0968970:three_prime_UTR
GTGGAAGAAGTTGGGAATTG+AGG 0.453224 6_4:+364666 None:intergenic
AAAGAAGTGATTCCTAATTA+CGG 0.454305 6_4:-364390 Msa0968970:CDS
TCTGATCCTATCATGGCAAC+TGG 0.460438 6_4:-362653 Msa0968970:CDS
TTGCAGCATATGGTTATTGG+TGG 0.460764 6_4:-362132 Msa0968970:intron
TTGGTAGATTGCGTAGGAAC+AGG 0.464261 6_4:-364564 Msa0968970:CDS
CATGATAGGATCAGAGTACT+TGG 0.465171 6_4:+362661 None:intergenic
TTCAGGGGTTTCTTGCTGAA+GGG 0.468219 6_4:-364224 Msa0968970:CDS
TTGTTATTTGGTGAGTCCAT+TGG 0.469846 6_4:-363116 Msa0968970:CDS
GAAAGAGTAGCGGCGGGTGG+TGG 0.471413 6_4:+364701 None:intergenic
GTTGCGGTGACGGCGGTGAA+GGG 0.482225 6_4:+364726 None:intergenic
TTTGGAAGTGCTGTTAGCTA+TGG 0.483715 6_4:-362003 Msa0968970:CDS
ACAAATGAAATATACATCTT+GGG 0.490952 6_4:-360698 Msa0968970:three_prime_UTR
GTACAGTTCAACGGATGTAT+TGG 0.491468 6_4:-362046 Msa0968970:CDS
ATGCGGAAACGGAGAGAAGA+TGG 0.492013 6_4:+364639 None:intergenic
CTGGCCCCAACAAGCTGTAC+AGG 0.499277 6_4:+361093 None:intergenic
GGGTTGCAGAAGACTTCAGC+TGG 0.500512 6_4:-364204 Msa0968970:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 6_4:-362660 Msa0968970:CDS
ACTTCTCACTGTGGGGAAGT+GGG 0.511659 6_4:-362748 Msa0968970:CDS
CCATAGATTACTGTTACGCT+AGG 0.515095 6_4:-360785 Msa0968970:three_prime_UTR
GCAAGTACAGCCACCGTCAA+AGG 0.517053 6_4:+363143 None:intergenic
ATCCTATCATGGCAACTGGA+TGG 0.518310 6_4:-362649 Msa0968970:CDS
CAAGCCTCGTACTGCACAGA+TGG 0.525945 6_4:-360829 Msa0968970:three_prime_UTR
GGGCTTGTACTTGGCGTCGT+AGG 0.527479 6_4:-363077 Msa0968970:CDS
TTGGCACTGTCATGGTTCGG+TGG 0.529695 6_4:-362688 Msa0968970:CDS
CTCACCTGTACAGCTTGTTG+GGG 0.533384 6_4:-361097 Msa0968970:CDS
TGGAGCATGGAATGCGGAAA+CGG 0.533737 6_4:+364628 None:intergenic
TGGCACTGTCATGGTTCGGT+GGG 0.533959 6_4:-362687 Msa0968970:CDS
TACCTGCCCTATCATTTGAT+GGG 0.539425 6_4:-362775 Msa0968970:CDS
CTTCTCACTGTGGGGAAGTG+GGG 0.546730 6_4:-362747 Msa0968970:CDS
TGGGAGCAACTTCTCACTGT+GGG 0.546919 6_4:-362756 Msa0968970:CDS
ACGGAGAGAAGATGGAGTGG+TGG 0.552388 6_4:+364647 None:intergenic
GGCAGCTCCAACAACTCCAA+TGG 0.552770 6_4:+363100 None:intergenic
GGTGACGGCGGTGAAGGGAG+TGG 0.554503 6_4:+364731 None:intergenic
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 6_4:-362714 Msa0968970:CDS
TCCTATCATGGCAACTGGAT+GGG 0.555793 6_4:-362648 Msa0968970:intron
TTAAGACTCCCACTTACAGC+AGG 0.557189 6_4:+362072 None:intergenic
TATAGATTATGACTTGTGTA+TGG 0.557434 6_4:-360748 Msa0968970:three_prime_UTR
TCATCGAAGAGACTGTGCCT+TGG 0.558301 6_4:-364483 Msa0968970:CDS
CGTAGGACTTGTGTTACTTG+AGG 0.562304 6_4:-363060 Msa0968970:intron
CTCCCATCAAATGATAGGGC+AGG 0.566112 6_4:+362773 None:intergenic
CAGTTGGCACTGTCATGGTT+CGG 0.567605 6_4:-362691 Msa0968970:CDS
TACTGTAGCTGCAATATACA+TGG 0.570176 6_4:-361067 Msa0968970:CDS
CGGCGACAGCATGGCCACGA+TGG 0.570207 6_4:+364764 None:intergenic
CGTAGGAACAGGACAAGATG+TGG 0.575114 6_4:-364553 Msa0968970:CDS
ATCTACCAACTCGAGGTCGG+TGG 0.578134 6_4:+364578 None:intergenic
GCAACAAGAAGAAACCCAGC+TGG 0.582668 6_4:+364336 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 6_4:-362696 Msa0968970:CDS
GTTGCTCCCATCAAATGATA+GGG 0.584772 6_4:+362769 None:intergenic
TACGACGCCAAGTACAAGCC+CGG 0.585440 6_4:+363079 None:intergenic
TCGATGCTGCTTGCTTTCAG+GGG 0.585931 6_4:-364239 Msa0968970:CDS
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 6_4:-362707 Msa0968970:CDS
TGGGAATTGAGGAGTGTGAG+AGG 0.588985 6_4:+364677 None:intergenic
CAAGTTCAATTAAGCACTTG+TGG 0.589636 6_4:-364834 Msa0968970:five_prime_UTR
GGTGGTGGTTGCGGTGACGG+CGG 0.590085 6_4:+364719 None:intergenic
TGATTCACAACCTTTGACGG+TGG 0.594698 6_4:-363153 Msa0968970:CDS
ATCCAAGCATTGAAACCAGA+AGG 0.594844 6_4:+364285 None:intergenic
GTAGCACCACGGCGACAGCA+TGG 0.599780 6_4:+364755 None:intergenic
GCAGTCTTACCCGAAAATTG+AGG 0.600905 6_4:+361506 None:intergenic
TAAGAATCGCGAATGCCACA+AGG 0.602922 6_4:+362103 None:intergenic
CCATGCTCCAACAAAACCAC+CGG 0.603023 6_4:-364615 Msa0968970:CDS
GCAATCTACCAACTCGAGGT+CGG 0.604725 6_4:+364575 None:intergenic
TCTGCCATCTGTGCAGTACG+AGG 0.611982 6_4:+360825 None:intergenic
AGAGGTGAAAGAGTAGCGGC+GGG 0.615126 6_4:+364695 None:intergenic
AGAATCCACCGACCTCGAGT+TGG 0.615914 6_4:-364583 Msa0968970:CDS
CTTGGGGAAGCGTTATGGGA+AGG 0.616732 6_4:-364465 Msa0968970:CDS
ACAATGAGCCTGCTGTAAGT+GGG 0.625638 6_4:-362080 Msa0968970:CDS
GAGAGGTGAAAGAGTAGCGG+CGG 0.626582 6_4:+364694 None:intergenic
TATTGCAGCTACAGTAACAC+TGG 0.628956 6_4:+361074 None:intergenic
AAGAATCGCGAATGCCACAA+GGG 0.631679 6_4:+362104 None:intergenic
GTGCTTAAGATCACATATCA+CGG 0.639978 6_4:+360908 None:intergenic
GAAAATTGAGGCAAACATTG+GGG 0.640798 6_4:+361518 None:intergenic
TCTTAAAGAGTACAGTTCAA+CGG 0.646276 6_4:-362055 Msa0968970:CDS
GCAGTTCCCCAAAAGAAGAA+CGG 0.646412 6_4:+364426 None:intergenic
ATGGGAGCAACTTCTCACTG+TGG 0.649529 6_4:-362757 Msa0968970:CDS
GGTGAAAGAGTAGCGGCGGG+TGG 0.654425 6_4:+364698 None:intergenic
ATCGAAGAGACTGTGCCTTG+GGG 0.656879 6_4:-364481 Msa0968970:CDS
GAAACGGAGAGAAGATGGAG+TGG 0.658221 6_4:+364644 None:intergenic
CTTCCCATAACGCTTCCCCA+AGG 0.660357 6_4:+364466 None:intergenic
AGAATCGCGAATGCCACAAG+GGG 0.663619 6_4:+362105 None:intergenic
CTACGCAATCTACCAACTCG+AGG 0.669742 6_4:+364571 None:intergenic
TGTGAGAGGTGAAAGAGTAG+CGG 0.670902 6_4:+364691 None:intergenic
GGATTCTGTTGATTTGCCGG+TGG 0.671329 6_4:+364599 None:intergenic
AACTCCACTCACTTCCATCG+TGG 0.678319 6_4:-364778 Msa0968970:five_prime_UTR
CTCGAGTTGGTAGATTGCGT+AGG 0.679030 6_4:-364570 Msa0968970:CDS
CTCCTAACCGAAGAAGACGA+AGG 0.687930 6_4:-364525 Msa0968970:CDS
ATGGCCACGATGGAAGTGAG+TGG 0.695329 6_4:+364774 None:intergenic
TCGTGGCCATGCTGTCGCCG+TGG 0.699440 6_4:-364761 Msa0968970:exon
GGGAGCAACTTCTCACTGTG+GGG 0.700978 6_4:-362755 Msa0968970:CDS
AAGGGAGTGGAGTAGCACCA+CGG 0.710930 6_4:+364744 None:intergenic
GAATCGCGAATGCCACAAGG+GGG 0.735698 6_4:+362106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTATTTTTTTTT+TGG - chr6_4:364057-364076 Msa0968970:intron 0.0%
!!! TTTCATTATATTTATTTTTG+CGG - chr6_4:363013-363032 Msa0968970:intron 10.0%
!!! AATTTGTTAAAAAAAAAAAG+AGG - chr6_4:363275-363294 Msa0968970:intron 10.0%
!!! TTTTTTTTTTTTAAAGAAAG+TGG + chr6_4:363730-363749 None:intergenic 10.0%
!! AAAAATAAAAAATAAAAACC+CGG + chr6_4:364047-364066 None:intergenic 10.0%
!! AAATATATAATTGTAAAAGA+TGG + chr6_4:364175-364194 None:intergenic 10.0%
!!! AGATTTTGATTTCTAATTTT+GGG + chr6_4:362534-362553 None:intergenic 15.0%
!!! AAGATTTTGATTTCTAATTT+TGG + chr6_4:362535-362554 None:intergenic 15.0%
!!! AAAATCTTTTACATATATTG+TGG - chr6_4:362547-362566 Msa0968970:intron 15.0%
!! TAAAAATTACAAAATCAACT+AGG + chr6_4:362635-362654 None:intergenic 15.0%
!!! TCTTGATTTTTAATTGAAAA+AGG + chr6_4:362959-362978 None:intergenic 15.0%
!! TAAATATATGAATTTCAACA+AGG - chr6_4:363614-363633 Msa0968970:intron 15.0%
!!! AAAATATTTGAATTTTCTAG+AGG + chr6_4:364296-364315 None:intergenic 15.0%
!!! TTATATATTAAGTTTTCTAC+TGG - chr6_4:364490-364509 Msa0968970:CDS 15.0%
!! TAACATATCTATTCTACAAA+AGG + chr6_4:361590-361609 None:intergenic 20.0%
!! TACTAGTAGTACTATTAATA+AGG - chr6_4:361608-361627 Msa0968970:intron 20.0%
!! ACTAGTAGTACTATTAATAA+GGG - chr6_4:361609-361628 Msa0968970:intron 20.0%
!!! TACTTGAGGTATTTTAATTT+TGG - chr6_4:362461-362480 Msa0968970:intron 20.0%
!!! TAATTTTGGTTTTAACCTAA+AGG - chr6_4:362475-362494 Msa0968970:intron 20.0%
!!! GATAATTTTATGCTATGAAA+CGG - chr6_4:362915-362934 Msa0968970:intron 20.0%
!!! TTTTAAATTGTAACGCAAAA+AGG + chr6_4:363058-363077 None:intergenic 20.0%
!! TAGTGAAATGATGATTATAT+AGG - chr6_4:363214-363233 Msa0968970:intron 20.0%
!! ATAAATGAAAATTCACAGAA+AGG + chr6_4:363588-363607 None:intergenic 20.0%
!! AAATATGTAAGTGTACAAAA+TGG + chr6_4:363845-363864 None:intergenic 20.0%
!! TAATATGGTGTATTCTTTAT+GGG + chr6_4:363902-363921 None:intergenic 20.0%
!! ATAATATGGTGTATTCTTTA+TGG + chr6_4:363903-363922 None:intergenic 20.0%
!! GATACTTCAATAAATTATGA+AGG + chr6_4:364226-364245 None:intergenic 20.0%
!! AAAATTGTATTTACACTGTA+AGG + chr6_4:364636-364655 None:intergenic 20.0%
!!! TTTTGATTAGTTGTAAATTC+AGG - chr6_4:364652-364671 Msa0968970:CDS 20.0%
!! ACAAATGAAATATACATCTT+GGG - chr6_4:364809-364828 Msa0968970:five_prime_UTR 20.0%
! AAAGAAGTGATTCCTAATTA+CGG - chr6_4:361117-361136 Msa0968970:CDS 25.0%
! TTGAATTAGAGCTTATAGTT+AGG - chr6_4:361663-361682 Msa0968970:intron 25.0%
! TGAATTAGAGCTTATAGTTA+GGG - chr6_4:361664-361683 Msa0968970:intron 25.0%
! TTCAAATGAAGCTTACATTT+AGG - chr6_4:361706-361725 Msa0968970:intron 25.0%
! TCAAATGAAGCTTACATTTA+GGG - chr6_4:361707-361726 Msa0968970:intron 25.0%
! GTGTTTCATATTGATAGATA+TGG - chr6_4:362203-362222 Msa0968970:intron 25.0%
!!! TATTGATAGATATGGATTAG+AGG - chr6_4:362211-362230 Msa0968970:intron 25.0%
!! TTTACATATATTGTGGATTG+CGG - chr6_4:362554-362573 Msa0968970:intron 25.0%
!! TTTTAGCATACAATTTCTCT+TGG - chr6_4:362650-362669 Msa0968970:CDS 25.0%
! CTTTAGTGAATAAACATAGA+AGG + chr6_4:362687-362706 None:intergenic 25.0%
!! AAATTCACACTTTTGTAAAC+TGG + chr6_4:363094-363113 None:intergenic 25.0%
!! AGTTTACAAAAGTGTGAATT+TGG - chr6_4:363093-363112 Msa0968970:CDS 25.0%
!! GTTTACAAAAGTGTGAATTT+GGG - chr6_4:363094-363113 Msa0968970:CDS 25.0%
! GTTAAAAAAAAAAAGAGGCA+TGG - chr6_4:363280-363299 Msa0968970:intron 25.0%
!! TGTTTTCTTGAAAAATGAGA+GGG + chr6_4:363756-363775 None:intergenic 25.0%
!! ATGTTTTCTTGAAAAATGAG+AGG + chr6_4:363757-363776 None:intergenic 25.0%
! TACTAATTACCATATTGAAG+AGG + chr6_4:363804-363823 None:intergenic 25.0%
! GCACAATGTCAATAATAATA+TGG + chr6_4:363917-363936 None:intergenic 25.0%
! AAAATCAGAAAGACAACTAA+TGG - chr6_4:364101-364120 Msa0968970:intron 25.0%
! CTATGTAGCAATTCTTTAAA+CGG - chr6_4:364124-364143 Msa0968970:intron 25.0%
! AAATTATGAAGGATGTAAGT+GGG + chr6_4:364215-364234 None:intergenic 25.0%
! TAAATTATGAAGGATGTAAG+TGG + chr6_4:364216-364235 None:intergenic 25.0%
! ACGAAAAAATGTGTATACAA+AGG + chr6_4:364354-364373 None:intergenic 25.0%
!!! TGTATACACATTTTTTCGTT+TGG - chr6_4:364355-364374 Msa0968970:CDS 25.0%
!!! ATTTTTTCGTTTGGTATTTC+AGG - chr6_4:364364-364383 Msa0968970:CDS 25.0%
!!! TATTTCAGGTTTTTGTATCT+CGG - chr6_4:364378-364397 Msa0968970:CDS 25.0%
!! TATAGATTATGACTTGTGTA+TGG - chr6_4:364759-364778 Msa0968970:exon 25.0%
! CACAAATGAAATATACATCT+TGG - chr6_4:364808-364827 Msa0968970:five_prime_UTR 25.0%
!!! TTTGATGCTGAGATTTTTTG+TGG + chr6_4:360711-360730 None:intergenic 30.0%
! TAATATCACCGTTCTTCTTT+TGG - chr6_4:361073-361092 Msa0968970:CDS 30.0%
! AATATCACCGTTCTTCTTTT+GGG - chr6_4:361074-361093 Msa0968970:CDS 30.0%
AAACGTTGGATATATAAGAG+AGG - chr6_4:361817-361836 Msa0968970:intron 30.0%
ATAAAAACCCAAACATGTTG+GGG + chr6_4:361949-361968 None:intergenic 30.0%
CATAAAAACCCAAACATGTT+GGG + chr6_4:361950-361969 None:intergenic 30.0%
ACATAAAAACCCAAACATGT+TGG + chr6_4:361951-361970 None:intergenic 30.0%
ACTGTAGTGTAGTTCTTATT+TGG - chr6_4:361995-362014 Msa0968970:CDS 30.0%
!!! GCTTAGTTTTATGTTGTAAC+CGG - chr6_4:362031-362050 Msa0968970:CDS 30.0%
AAAAGTTGGGGATTCATATT+TGG + chr6_4:362061-362080 None:intergenic 30.0%
!! TATTGATAGACATGGATTAG+AGG + chr6_4:362162-362181 None:intergenic 30.0%
CAGATTCATATTGATAGACA+TGG + chr6_4:362170-362189 None:intergenic 30.0%
!!! GTCAACTTTTTGTGTTGATT+CGG - chr6_4:362248-362267 Msa0968970:intron 30.0%
!!! TGTTGCTTGTTTTAACTATC+TGG - chr6_4:362307-362326 Msa0968970:intron 30.0%
!! TATTGATTCACAACCTTTGA+CGG - chr6_4:362351-362370 Msa0968970:intron 30.0%
AACTAGGTAATTGTATGTTG+TGG + chr6_4:362619-362638 None:intergenic 30.0%
! TATTTCTGCAACTATGATCA+GGG + chr6_4:363151-363170 None:intergenic 30.0%
! ATATTTCTGCAACTATGATC+AGG + chr6_4:363152-363171 None:intergenic 30.0%
! TCTTAAAGAGTACAGTTCAA+CGG - chr6_4:363452-363471 Msa0968970:intron 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr6_4:363531-363550 Msa0968970:intron 30.0%
!! ATTTTGACCTTGTAACCTTA+AGG - chr6_4:363656-363675 Msa0968970:intron 30.0%
! TTTTGACCTTGTAACCTTAA+GGG - chr6_4:363657-363676 Msa0968970:intron 30.0%
! GTTTTCTTGAAAAATGAGAG+GGG + chr6_4:363755-363774 None:intergenic 30.0%
CATCCATGTAAAATCCAAAA+CGG - chr6_4:363774-363793 Msa0968970:intron 30.0%
!! TAACCGTTTTGGATTTTACA+TGG + chr6_4:363780-363799 None:intergenic 30.0%
!!! GGTCAATTTTTTCTCTTGAA+TGG + chr6_4:364154-364173 None:intergenic 30.0%
! CATGTTTGTGTATCTTTTTG+AGG - chr6_4:364327-364346 Msa0968970:CDS 30.0%
!! TGTATGGCAAGTTTTGTATA+TGG - chr6_4:364775-364794 Msa0968970:exon 30.0%
CAAGTTCAATTAAGCACTTG+TGG - chr6_4:360673-360692 Msa0968970:three_prime_UTR 35.0%
! TGTTTTTCCTTCGTCTTCTT+CGG + chr6_4:360992-361011 None:intergenic 35.0%
! ATATCACCGTTCTTCTTTTG+GGG - chr6_4:361075-361094 Msa0968970:CDS 35.0%
ACGAAAAAAGGACCGTAATT+AGG + chr6_4:361132-361151 None:intergenic 35.0%
! TCTTTTCGTTTAATTCCAGC+TGG - chr6_4:361156-361175 Msa0968970:intron 35.0%
! CTTTTCGTTTAATTCCAGCT+GGG - chr6_4:361157-361176 Msa0968970:intron 35.0%
AAGCTGAAAACAGCTTATGA+AGG - chr6_4:361511-361530 Msa0968970:intron 35.0%
TAGAGCTTATAGTTAGGGTT+AGG - chr6_4:361669-361688 Msa0968970:intron 35.0%
AGAGCTTATAGTTAGGGTTA+GGG - chr6_4:361670-361689 Msa0968970:intron 35.0%
!!! TTGTTGCTGCTTTGTTTTGT+TGG - chr6_4:361748-361767 Msa0968970:intron 35.0%
!! CTTTAAGGCAATGGGTTTAT+GGG + chr6_4:361846-361865 None:intergenic 35.0%
!! ACTTTAAGGCAATGGGTTTA+TGG + chr6_4:361847-361866 None:intergenic 35.0%
! AACCCATTGCCTTAAAGTTT+TGG - chr6_4:361849-361868 Msa0968970:intron 35.0%
! ACCCATTGCCTTAAAGTTTT+GGG - chr6_4:361850-361869 Msa0968970:intron 35.0%
!! ACCCAAAACTTTAAGGCAAT+GGG + chr6_4:361854-361873 None:intergenic 35.0%
!! TACCCAAAACTTTAAGGCAA+TGG + chr6_4:361855-361874 None:intergenic 35.0%
CACTCTTACCCAAAACTTTA+AGG + chr6_4:361861-361880 None:intergenic 35.0%
!!! TAAAGTTTTGGGTAAGAGTG+TGG - chr6_4:361861-361880 Msa0968970:intron 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG - chr6_4:362005-362024 Msa0968970:CDS 35.0%
!! AGTTCTTATTTGGTGCACAT+TGG + chr6_4:362005-362024 None:intergenic 35.0%
ACTGCAGTGTAGTTCTTATT+TGG + chr6_4:362106-362125 None:intergenic 35.0%
!! ATGGATTAGAGGAAAAGTTG+GGG + chr6_4:362222-362241 None:intergenic 35.0%
!! CATGGATTAGAGGAAAAGTT+GGG + chr6_4:362152-362171 None:intergenic 35.0%
!! ACATGGATTAGAGGAAAAGT+TGG + chr6_4:362153-362172 None:intergenic 35.0%
!!! CTTGTTTTAACTATCTGGCA+TGG - chr6_4:362312-362331 Msa0968970:intron 35.0%
!! GTACTTGCTGCTTTGTTATT+TGG - chr6_4:362379-362398 Msa0968970:intron 35.0%
!! TTGTTATTTGGTGAGTCCAT+TGG - chr6_4:362391-362410 Msa0968970:intron 35.0%
CGAATTAAGACACTTCCTTT+AGG + chr6_4:362493-362512 None:intergenic 35.0%
! AATTTTGGGCTGTGCTTAAA+GGG + chr6_4:362520-362539 None:intergenic 35.0%
! TAATTTTGGGCTGTGCTTAA+AGG + chr6_4:362521-362540 None:intergenic 35.0%
TTCACTAAAGCAAACACTAC+TGG - chr6_4:362697-362716 Msa0968970:CDS 35.0%
CCATATGCTGCAAAAGAAAA+AGG + chr6_4:363368-363387 None:intergenic 35.0%
! CCTTTTTCTTTTGCAGCATA+TGG - chr6_4:363365-363384 Msa0968970:intron 35.0%
! CTTTTGCAGCATATGGTTAT+TGG - chr6_4:363372-363391 Msa0968970:intron 35.0%
! ATTGAAGAGGTTAACCGTTT+TGG + chr6_4:363791-363810 None:intergenic 35.0%
AACGGTTAACCTCTTCAATA+TGG - chr6_4:363792-363811 Msa0968970:intron 35.0%
GAAAATTGAGGCAAACATTG+GGG + chr6_4:363992-364011 None:intergenic 35.0%
CGAAAATTGAGGCAAACATT+GGG + chr6_4:363993-364012 None:intergenic 35.0%
! CCAATGTTTGCCTCAATTTT+CGG - chr6_4:363991-364010 Msa0968970:intron 35.0%
! CAATGTTTGCCTCAATTTTC+GGG - chr6_4:363992-364011 Msa0968970:intron 35.0%
GTAGCAATTCTTTAAACGGA+AGG - chr6_4:364128-364147 Msa0968970:intron 35.0%
! TTTTTCGTACCTTTTGTCAC+CGG - chr6_4:364265-364284 Msa0968970:CDS 35.0%
!! GAATTTTCTAGAGGAAATGC+CGG + chr6_4:364287-364306 None:intergenic 35.0%
TACTGTAGCTGCAATATACA+TGG - chr6_4:364440-364459 Msa0968970:CDS 35.0%
ACATAACCCAGCGTTAAAAA+TGG - chr6_4:364521-364540 Msa0968970:CDS 35.0%
!!! TTCATGCCATTTTTAACGCT+GGG + chr6_4:364530-364549 None:intergenic 35.0%
AAAATGGCATGAACTCGAAT+TGG - chr6_4:364537-364556 Msa0968970:CDS 35.0%
AAATGGCATGAACTCGAATT+GGG - chr6_4:364538-364557 Msa0968970:CDS 35.0%
GTGCTTAAGATCACATATCA+CGG + chr6_4:364602-364621 None:intergenic 35.0%
!!! GATGCTGAGATTTTTTGTGG+TGG + chr6_4:360708-360727 None:intergenic 40.0%
! TTTTGTTGGAGCATGGAATG+CGG + chr6_4:360888-360907 None:intergenic 40.0%
CGAAAAGACGCAACGAAAAA+AGG + chr6_4:361144-361163 None:intergenic 40.0%
!! TACCTTCTGGTTTCAATGCT+TGG - chr6_4:361220-361239 Msa0968970:intron 40.0%
!! ATCCAAGCATTGAAACCAGA+AGG + chr6_4:361225-361244 None:intergenic 40.0%
! AAGCTTACATTTAGGGTCAG+AGG - chr6_4:361714-361733 Msa0968970:intron 40.0%
ACTAGAAATGGAGGAAACGT+TGG - chr6_4:361803-361822 Msa0968970:intron 40.0%
!! CTTATTTGGTGCACATTGGA+TGG - chr6_4:362009-362028 Msa0968970:CDS 40.0%
ATGGCTTAGAGGAAAAGTTG+GGG + chr6_4:362073-362092 None:intergenic 40.0%
GATGGCTTAGAGGAAAAGTT+GGG + chr6_4:362074-362093 None:intergenic 40.0%
!! CTTATTTGGTGCACATTGGA+TGG + chr6_4:362009-362028 None:intergenic 40.0%
TTACCTGCCCTATCATTTGA+TGG - chr6_4:362731-362750 Msa0968970:CDS 40.0%
TACCTGCCCTATCATTTGAT+GGG - chr6_4:362732-362751 Msa0968970:CDS 40.0%
GTTGCTCCCATCAAATGATA+GGG + chr6_4:362741-362760 None:intergenic 40.0%
AGTTGCTCCCATCAAATGAT+AGG + chr6_4:362742-362761 None:intergenic 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr6_4:362849-362868 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr6_4:362847-362866 Msa0968970:intron 40.0%
TTGTAACGCAAAAAGGCTTG+AGG + chr6_4:363051-363070 None:intergenic 40.0%
AAGTGTGAATTTGGGTGTGT+TGG - chr6_4:363102-363121 Msa0968970:CDS 40.0%
TGAAAGGTCTCTCGTTGTTT+AGG - chr6_4:363308-363327 Msa0968970:intron 40.0%
TTGCAGCATATGGTTATTGG+TGG - chr6_4:363375-363394 Msa0968970:intron 40.0%
GTACAGTTCAACGGATGTAT+TGG - chr6_4:363461-363480 Msa0968970:intron 40.0%
TTCCAAAAATGGACGTGTAG+AGG + chr6_4:363491-363510 None:intergenic 40.0%
GCTAACAGCACTTCCAAAAA+TGG + chr6_4:363502-363521 None:intergenic 40.0%
!! TTTGGAAGTGCTGTTAGCTA+TGG - chr6_4:363504-363523 Msa0968970:intron 40.0%
TCACAGAAAGGAAAAGAGAG+AGG + chr6_4:363576-363595 None:intergenic 40.0%
! AAGGTGTCAGTTCAGTGTTA+AGG - chr6_4:363633-363652 Msa0968970:intron 40.0%
CTACATCCCTTAAGGTTACA+AGG + chr6_4:363666-363685 None:intergenic 40.0%
GATCTAGACTACATCCCTTA+AGG + chr6_4:363674-363693 None:intergenic 40.0%
GATGTAGTCTAGATCACCTT+GGG - chr6_4:363679-363698 Msa0968970:intron 40.0%
ATGTAGTCTAGATCACCTTG+GGG - chr6_4:363680-363699 Msa0968970:intron 40.0%
CCGAAAATTGAGGCAAACAT+TGG + chr6_4:363994-364013 None:intergenic 40.0%
TAACAATGGGAAAGAGTTGC+CGG - chr6_4:364025-364044 Msa0968970:intron 40.0%
TATTGCAGCTACAGTAACAC+TGG + chr6_4:364436-364455 None:intergenic 40.0%
!!! GTTCATGCCATTTTTAACGC+TGG + chr6_4:364531-364550 None:intergenic 40.0%
! ATTGGGAATGCTAGTGCTTT+TGG - chr6_4:364555-364574 Msa0968970:CDS 40.0%
! TAGTGCTTTTGGACATGTAG+AGG - chr6_4:364566-364585 Msa0968970:CDS 40.0%
CCTAGCGTAACAGTAATCTA+TGG + chr6_4:364725-364744 None:intergenic 40.0%
CCATAGATTACTGTTACGCT+AGG - chr6_4:364722-364741 Msa0968970:CDS 40.0%
TGTGAGAGGTGAAAGAGTAG+CGG + chr6_4:360819-360838 None:intergenic 45.0%
GTGGAAGAAGTTGGGAATTG+AGG + chr6_4:360844-360863 None:intergenic 45.0%
! ATGGAGTGGTGGAAGAAGTT+GGG + chr6_4:360852-360871 None:intergenic 45.0%
!!! TGATTTGCCGGTGGTTTTGT+TGG + chr6_4:360902-360921 None:intergenic 45.0%
!! GGTGGATTCTGTTGATTTGC+CGG + chr6_4:360914-360933 None:intergenic 45.0%
TTGGTAGATTGCGTAGGAAC+AGG - chr6_4:360943-360962 Msa0968970:three_prime_UTR 45.0%
TTCCTTCGTCTTCTTCGGTT+AGG + chr6_4:360987-361006 None:intergenic 45.0%
GCAGTTCCCCAAAAGAAGAA+CGG + chr6_4:361084-361103 None:intergenic 45.0%
!! CTTCTTTTGGGGAACTGCAA+TGG - chr6_4:361086-361105 Msa0968970:CDS 45.0%
!!! GTTGCTTTCGCTGCTTTTAG+AGG - chr6_4:361189-361208 Msa0968970:intron 45.0%
AGAGGAAGAGCTTTACCTTC+TGG - chr6_4:361207-361226 Msa0968970:intron 45.0%
TTTCAGGGGTTTCTTGCTGA+AGG - chr6_4:361282-361301 Msa0968970:intron 45.0%
TTCAGGGGTTTCTTGCTGAA+GGG - chr6_4:361283-361302 Msa0968970:intron 45.0%
! CAGAAGACTTCAGCTGGTTT+GGG - chr6_4:361309-361328 Msa0968970:intron 45.0%
! CTTACATTTAGGGTCAGAGG+TGG - chr6_4:361717-361736 Msa0968970:intron 45.0%
! TGTCCCACATCGACTAGAAA+TGG - chr6_4:361791-361810 Msa0968970:intron 45.0%
!! CCTCCATTTCTAGTCGATGT+GGG + chr6_4:361797-361816 None:intergenic 45.0%
!! TCCTCCATTTCTAGTCGATG+TGG + chr6_4:361798-361817 None:intergenic 45.0%
! GTGTGGTGTCTCTCTTTTAG+CGG - chr6_4:361878-361897 Msa0968970:intron 45.0%
! TGTGGTGTCTCTCTTTTAGC+GGG - chr6_4:361879-361898 Msa0968970:intron 45.0%
CAAACATGTTGGGGATTCTG+GGG + chr6_4:361940-361959 None:intergenic 45.0%
CCAAACATGTTGGGGATTCT+GGG + chr6_4:361941-361960 None:intergenic 45.0%
CCAGAATCCCCAACATGTTT+GGG - chr6_4:361939-361958 Msa0968970:intron 45.0%
!! GGGATTCATATTTGGTGCAC+CGG + chr6_4:362053-362072 None:intergenic 45.0%
GGATGGCTTAGAGGAAAAGT+TGG + chr6_4:362075-362094 None:intergenic 45.0%
AGAGGAAAAGTTGGGGATTC+TGG + chr6_4:362066-362085 None:intergenic 45.0%
ATCTGGCATGGATATATCGC+AGG - chr6_4:362324-362343 Msa0968970:intron 45.0%
TGATTCACAACCTTTGACGG+TGG - chr6_4:362354-362373 Msa0968970:intron 45.0%
!! CGTAGGACTTGTGTTACTTG+AGG - chr6_4:362447-362466 Msa0968970:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr6_4:362854-362873 Msa0968970:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr6_4:362858-362877 Msa0968970:intron 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr6_4:362859-362878 Msa0968970:intron 45.0%
CAACTATGATCAGGGACTCA+GGG + chr6_4:363143-363162 None:intergenic 45.0%
! AAGAGGCATGGACATCTGAA+AGG - chr6_4:363292-363311 Msa0968970:intron 45.0%
CTCGTTGTTTAGGAACTCTC+TGG - chr6_4:363318-363337 Msa0968970:intron 45.0%
! TTAGGAACTCTCTGGAAGCT+TGG - chr6_4:363326-363345 Msa0968970:intron 45.0%
AAGAATCGCGAATGCCACAA+GGG + chr6_4:363406-363425 None:intergenic 45.0%
TAAGAATCGCGAATGCCACA+AGG + chr6_4:363407-363426 None:intergenic 45.0%
AACAATGAGCCTGCTGTAAG+TGG - chr6_4:363426-363445 Msa0968970:intron 45.0%
ACAATGAGCCTGCTGTAAGT+GGG - chr6_4:363427-363446 Msa0968970:intron 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr6_4:363438-363457 None:intergenic 45.0%
! CTCCTCTACACGTCCATTTT+TGG - chr6_4:363486-363505 Msa0968970:intron 45.0%
GGATGTAGTCTAGATCACCT+TGG - chr6_4:363678-363697 Msa0968970:intron 45.0%
! CCATTTTACAACTGTCCCCA+AGG + chr6_4:363698-363717 None:intergenic 45.0%
CCTTGGGGACAGTTGTAAAA+TGG - chr6_4:363695-363714 Msa0968970:intron 45.0%
TTGTGCTTGTGATGCATTGC+AGG - chr6_4:363931-363950 Msa0968970:intron 45.0%
GCAGTCTTACCCGAAAATTG+AGG + chr6_4:364004-364023 None:intergenic 45.0%
GGGTAAGACTGCCTAACAAT+GGG - chr6_4:364012-364031 Msa0968970:intron 45.0%
GGCAACTCTTTCCCATTGTT+AGG + chr6_4:364026-364045 None:intergenic 45.0%
AACAATGGGAAAGAGTTGCC+GGG - chr6_4:364026-364045 Msa0968970:intron 45.0%
TTCTCACCTGTACAGCTTGT+TGG - chr6_4:364408-364427 Msa0968970:CDS 45.0%
! TCTCACCTGTACAGCTTGTT+GGG - chr6_4:364409-364428 Msa0968970:CDS 45.0%
AACTCCACTCACTTCCATCG+TGG - chr6_4:360729-360748 Msa0968970:three_prime_UTR 50.0%
! TGGGAATTGAGGAGTGTGAG+AGG + chr6_4:360833-360852 None:intergenic 50.0%
! GATGGAGTGGTGGAAGAAGT+TGG + chr6_4:360853-360872 None:intergenic 50.0%
GAAACGGAGAGAAGATGGAG+TGG + chr6_4:360866-360885 None:intergenic 50.0%
ATGCGGAAACGGAGAGAAGA+TGG + chr6_4:360871-360890 None:intergenic 50.0%
TGGAGCATGGAATGCGGAAA+CGG + chr6_4:360882-360901 None:intergenic 50.0%
CCATGCTCCAACAAAACCAC+CGG - chr6_4:360892-360911 Msa0968970:three_prime_UTR 50.0%
!! GGATTCTGTTGATTTGCCGG+TGG + chr6_4:360911-360930 None:intergenic 50.0%
GCAATCTACCAACTCGAGGT+CGG + chr6_4:360935-360954 None:intergenic 50.0%
CTACGCAATCTACCAACTCG+AGG + chr6_4:360939-360958 None:intergenic 50.0%
!! CTCGAGTTGGTAGATTGCGT+AGG - chr6_4:360937-360956 Msa0968970:three_prime_UTR 50.0%
CGTAGGAACAGGACAAGATG+TGG - chr6_4:360954-360973 Msa0968970:three_prime_UTR 50.0%
CTCCTAACCGAAGAAGACGA+AGG - chr6_4:360982-361001 Msa0968970:three_prime_UTR 50.0%
TCATCGAAGAGACTGTGCCT+TGG - chr6_4:361024-361043 Msa0968970:exon 50.0%
CATCGAAGAGACTGTGCCTT+GGG - chr6_4:361025-361044 Msa0968970:exon 50.0%
ATCGAAGAGACTGTGCCTTG+GGG - chr6_4:361026-361045 Msa0968970:exon 50.0%
!! CTTTTGGGGAACTGCAATGG+TGG - chr6_4:361089-361108 Msa0968970:CDS 50.0%
GCAACAAGAAGAAACCCAGC+TGG + chr6_4:361174-361193 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr6_4:361267-361286 Msa0968970:intron 50.0%
! TCGATGCTGCTTGCTTTCAG+GGG - chr6_4:361268-361287 Msa0968970:intron 50.0%
GCAGAAGACTTCAGCTGGTT+TGG - chr6_4:361308-361327 Msa0968970:intron 50.0%
! CCCACATCGACTAGAAATGG+AGG - chr6_4:361794-361813 Msa0968970:intron 50.0%
CCCAGAATCCCCAACATGTT+TGG - chr6_4:361938-361957 Msa0968970:intron 50.0%
CCCAAACATGTTGGGGATTC+TGG + chr6_4:361942-361961 None:intergenic 50.0%
GTGCACATTGGATGGCTTAG+AGG + chr6_4:362017-362036 None:intergenic 50.0%
GGTGAGTCCATTGGAGTTGT+TGG - chr6_4:362400-362419 Msa0968970:intron 50.0%
ATTGGAGTTGTTGGAGCTGC+CGG - chr6_4:362409-362428 Msa0968970:intron 50.0%
CTCCCATCAAATGATAGGGC+AGG + chr6_4:362737-362756 None:intergenic 50.0%
ATGGGAGCAACTTCTCACTG+TGG - chr6_4:362750-362769 Msa0968970:CDS 50.0%
TGGGAGCAACTTCTCACTGT+GGG - chr6_4:362751-362770 Msa0968970:CDS 50.0%
AACTTCTCACTGTGGGGAAG+TGG - chr6_4:362758-362777 Msa0968970:CDS 50.0%
ACTTCTCACTGTGGGGAAGT+GGG - chr6_4:362759-362778 Msa0968970:CDS 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr6_4:362816-362835 Msa0968970:intron 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr6_4:362863-362882 None:intergenic 50.0%
GCAACTATGATCAGGGACTC+AGG + chr6_4:363144-363163 None:intergenic 50.0%
AGAATCGCGAATGCCACAAG+GGG + chr6_4:363405-363424 None:intergenic 50.0%
CGGGTAAGACTGCCTAACAA+TGG - chr6_4:364011-364030 Msa0968970:intron 50.0%
GAGGAAATGCCGGTGACAAA+AGG + chr6_4:364277-364296 None:intergenic 50.0%
!! CTCACCTGTACAGCTTGTTG+GGG - chr6_4:364410-364429 Msa0968970:CDS 50.0%
ATGGCCACGATGGAAGTGAG+TGG + chr6_4:360736-360755 None:intergenic 55.0%
AAGGGAGTGGAGTAGCACCA+CGG + chr6_4:360766-360785 None:intergenic 55.0%
AGAGGTGAAAGAGTAGCGGC+GGG + chr6_4:360815-360834 None:intergenic 55.0%
GAGAGGTGAAAGAGTAGCGG+CGG + chr6_4:360816-360835 None:intergenic 55.0%
ACGGAGAGAAGATGGAGTGG+TGG + chr6_4:360863-360882 None:intergenic 55.0%
!!! CCGGTGGTTTTGTTGGAGCA+TGG + chr6_4:360895-360914 None:intergenic 55.0%
AGAATCCACCGACCTCGAGT+TGG - chr6_4:360924-360943 Msa0968970:three_prime_UTR 55.0%
ATCTACCAACTCGAGGTCGG+TGG + chr6_4:360932-360951 None:intergenic 55.0%
!! TGTGCCTTGGGGAAGCGTTA+TGG - chr6_4:361037-361056 Msa0968970:exon 55.0%
!! GTGCCTTGGGGAAGCGTTAT+GGG - chr6_4:361038-361057 Msa0968970:exon 55.0%
CTTCCCATAACGCTTCCCCA+AGG + chr6_4:361044-361063 None:intergenic 55.0%
!! CTTGGGGAAGCGTTATGGGA+AGG - chr6_4:361042-361061 Msa0968970:CDS 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr6_4:361266-361285 Msa0968970:intron 55.0%
GGGTTGCAGAAGACTTCAGC+TGG - chr6_4:361303-361322 Msa0968970:intron 55.0%
!! CGGCAATGGGCTAAACGTCT+AGG + chr6_4:361906-361925 None:intergenic 55.0%
GCAAGTACAGCCACCGTCAA+AGG + chr6_4:362367-362386 None:intergenic 55.0%
GGCAGCTCCAACAACTCCAA+TGG + chr6_4:362410-362429 None:intergenic 55.0%
TTGGAGTTGTTGGAGCTGCC+GGG - chr6_4:362410-362429 Msa0968970:intron 55.0%
TACGACGCCAAGTACAAGCC+CGG + chr6_4:362431-362450 None:intergenic 55.0%
GGGAGCAACTTCTCACTGTG+GGG - chr6_4:362752-362771 Msa0968970:CDS 55.0%
CTTCTCACTGTGGGGAAGTG+GGG - chr6_4:362760-362779 Msa0968970:CDS 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr6_4:362793-362812 Msa0968970:intron 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr6_4:362811-362830 Msa0968970:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr6_4:362819-362838 Msa0968970:intron 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr6_4:362820-362839 Msa0968970:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr6_4:363389-363408 Msa0968970:intron 55.0%
GAATCGCGAATGCCACAAGG+GGG + chr6_4:363404-363423 None:intergenic 55.0%
CAAGCCTCGTACTGCACAGA+TGG - chr6_4:364678-364697 Msa0968970:CDS 55.0%
TCTGCCATCTGTGCAGTACG+AGG + chr6_4:364685-364704 None:intergenic 55.0%
!! ATTCTGGGGAGCGCTTGGAG+CGG + chr6_4:361926-361945 None:intergenic 60.0%
GGGCTTGTACTTGGCGTCGT+AGG - chr6_4:362430-362449 Msa0968970:intron 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr6_4:362800-362819 Msa0968970:intron 60.0%
CTGGCCCCAACAAGCTGTAC+AGG + chr6_4:364417-364436 None:intergenic 60.0%
GTAGCACCACGGCGACAGCA+TGG + chr6_4:360755-360774 None:intergenic 65.0%
! GTTGCGGTGACGGCGGTGAA+GGG + chr6_4:360784-360803 None:intergenic 65.0%
!! GGTGGTGGTGGTTGCGGTGA+CGG + chr6_4:360794-360813 None:intergenic 65.0%
GAAAGAGTAGCGGCGGGTGG+TGG + chr6_4:360809-360828 None:intergenic 65.0%
GGTGAAAGAGTAGCGGCGGG+TGG + chr6_4:360812-360831 None:intergenic 65.0%
! GGAGCGCTTGGAGCGGCAAT+GGG + chr6_4:361919-361938 None:intergenic 65.0%
!! TGGGGATTCTGGGGAGCGCT+TGG + chr6_4:361931-361950 None:intergenic 65.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr6_4:362421-362440 Msa0968970:intron 65.0%
CACTGTGGGGAAGTGGGGAG+TGG - chr6_4:362765-362784 Msa0968970:CDS 65.0%
TGTGGGGAAGTGGGGAGTGG+TGG - chr6_4:362768-362787 Msa0968970:CDS 65.0%
CGGCGACAGCATGGCCACGA+TGG + chr6_4:360746-360765 None:intergenic 70.0%
TCGTGGCCATGCTGTCGCCG+TGG - chr6_4:360746-360765 Msa0968970:three_prime_UTR 70.0%
! GGTGACGGCGGTGAAGGGAG+TGG + chr6_4:360779-360798 None:intergenic 70.0%
! GGTTGCGGTGACGGCGGTGA+AGG + chr6_4:360785-360804 None:intergenic 70.0%
! GGTGGTGGTTGCGGTGACGG+CGG + chr6_4:360791-360810 None:intergenic 70.0%
! AGAGTAGCGGCGGGTGGTGG+TGG + chr6_4:360806-360825 None:intergenic 70.0%
!! GGGAGCGCTTGGAGCGGCAA+TGG + chr6_4:361920-361939 None:intergenic 70.0%
!! GCGGCGGGTGGTGGTGGTTG+CGG + chr6_4:360800-360819 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 360665 364864 360665 ID=Msa0968970;Name=Msa0968970
chr6_4 mRNA 360665 364864 360665 ID=Msa0968970-mRNA-1;Parent=Msa0968970;Name=Msa0968970-mRNA-1;_AED=0.31;_eAED=0.31;_QI=89|1|1|1|1|1|6|376|396
chr6_4 exon 360665 361143 360665 ID=Msa0968970-mRNA-1:exon:232;Parent=Msa0968970-mRNA-1
chr6_4 exon 361516 361576 361516 ID=Msa0968970-mRNA-1:exon:231;Parent=Msa0968970-mRNA-1
chr6_4 exon 361977 362148 361977 ID=Msa0968970-mRNA-1:exon:230;Parent=Msa0968970-mRNA-1
chr6_4 exon 362649 362798 362649 ID=Msa0968970-mRNA-1:exon:229;Parent=Msa0968970-mRNA-1
chr6_4 exon 363061 363183 363061 ID=Msa0968970-mRNA-1:exon:228;Parent=Msa0968970-mRNA-1
chr6_4 exon 364194 364864 364194 ID=Msa0968970-mRNA-1:exon:227;Parent=Msa0968970-mRNA-1
chr6_4 five_prime_UTR 364776 364864 364776 ID=Msa0968970-mRNA-1:five_prime_utr;Parent=Msa0968970-mRNA-1
chr6_4 CDS 364194 364775 364194 ID=Msa0968970-mRNA-1:cds;Parent=Msa0968970-mRNA-1
chr6_4 CDS 363061 363183 363061 ID=Msa0968970-mRNA-1:cds;Parent=Msa0968970-mRNA-1
chr6_4 CDS 362649 362798 362649 ID=Msa0968970-mRNA-1:cds;Parent=Msa0968970-mRNA-1
chr6_4 CDS 361977 362148 361977 ID=Msa0968970-mRNA-1:cds;Parent=Msa0968970-mRNA-1
chr6_4 CDS 361516 361576 361516 ID=Msa0968970-mRNA-1:cds;Parent=Msa0968970-mRNA-1
chr6_4 CDS 361041 361143 361041 ID=Msa0968970-mRNA-1:cds;Parent=Msa0968970-mRNA-1
chr6_4 three_prime_UTR 360665 361040 360665 ID=Msa0968970-mRNA-1:three_prime_utr;Parent=Msa0968970-mRNA-1
Gene Sequence

>Msa0968970

ATGCTGTCGCCGTGGTGCTACTCCACTCCCTTCACCGCCGTCACCGCAACCACCACCACCCGCCGCTACTCTTTCACCTCTCACACTCCTCAATTCCCAACTTCTTCCACCACTCCATCTTCTCTCCGTTTCCGCATTCCATGCTCCAACAAAACCACCGGCAAATCAACAGAATCCACCGACCTCGAGTTGGTAGATTGCGTAGGAACAGGACAAGATGTGGAGTGTCTCCTAACCGAAGAAGACGAAGGAAAAACAAAAGATGAATCATCATCGAAGAGACTGTGCCTTGGGGAAGCGTTATGGGAAGGTGCAGTGTTAATATCACCGTTCTTCTTTTGGGGAACTGCAATGGTGGCGATGAAAGAAGTGATTCCTAATTACGGTCCTTTTTTCGTTGCGTCTTTTCGTTTAATTCCAGCTGGGTTTCTTCTTGTTGCTTTCGCTGCTTTTAGAGGAAGAGCTTTACCTTCTGGTTTCAATGCTTGGATTTCTATCGCAATATTCGCACTCGTCGATGCTGCTTGCTTTCAGGGGTTTCTTGCTGAAGGGTTGCAGAAGACTTCAGCTGGTTTGGGCAGTGTTATTATTGATTCACAACCTTTGACGGTGGCTGTACTTGCTGCTTTGTTATTTGGTGAGTCCATTGGAGTTGTTGGAGCTGCCGGGCTTGTACTTGGCGTCGTAGGACTTGTGTTACTTGAGTTACCTGCCCTATCATTTGATGGGAGCAACTTCTCACTGTGGGGAAGTGGGGAGTGGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTCGCGATTCTTAACAATGAGCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAACGGATGTATTGGCACTCCTCTACACGTCCATTTTTGGAAGTGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTAGCTTGACAAAGCTCAGTTCACTTACATTTCTAACCCCAATGTTTGCCTCAATTTTCGGGTTTTTGTATCTCGGTGAGACATTCTCACCTGTACAGCTTGTTGGGGCCAGTGTTACTGTAGCTGCAATATACATGGTTAACTTCAGAAACACTTCAGAATGA

Protein sequence

>Msa0968970

MLSPWCYSTPFTAVTATTTTRRYSFTSHTPQFPTSSTTPSSLRFRIPCSNKTTGKSTESTDLELVDCVGTGQDVECLLTEEDEGKTKDESSSKRLCLGEALWEGAVLISPFFFWGTAMVAMKEVIPNYGPFFVASFRLIPAGFLLVAFAAFRGRALPSGFNAWISIAIFALVDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAVLAALLFGESIGVVGAAGLVLGVVGLVLLELPALSFDGSNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVAFAILNNEPAVSGSLKEYSSTDVLALLYTSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGASVTVAAIYMVNFRNTSE*