AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425080 MtrunA17_Chr3g0127091 100.000 122 0 0 32 153 269 390 5.71e-82 246
Msa0425080 MtrunA17_Chr4g0068971 39.560 91 53 1 37 125 156 246 8.64e-15 69.3
Msa0425080 MtrunA17_Chr2g0293811 42.466 73 42 0 37 109 256 328 4.64e-14 68.2
Msa0425080 MtrunA17_Chr1g0194191 38.750 80 49 0 37 116 274 353 4.34e-12 62.4
Msa0425080 MtrunA17_Chr1g0171571 37.975 79 43 2 34 109 566 641 6.25e-12 62.4
Msa0425080 MtrunA17_Chr3g0136811 31.818 110 70 1 30 134 242 351 9.01e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425080 AT4G27800.1 73.554 121 32 0 32 152 268 388 4.88e-61 193
Msa0425080 AT4G27800.2 80.303 66 13 0 32 97 268 333 1.68e-30 112
Msa0425080 AT4G27800.3 75.862 58 14 0 32 89 268 325 1.28e-24 97.1
Msa0425080 AT1G48040.1 38.272 81 48 1 31 109 266 346 8.28e-13 65.1
Msa0425080 AT3G17250.1 36.986 73 46 0 37 109 318 390 2.76e-12 63.5
Msa0425080 AT3G62260.3 31.522 92 60 1 37 125 184 275 4.73e-12 62.4
Msa0425080 AT3G62260.1 31.522 92 60 1 37 125 273 364 6.34e-12 62.4
Msa0425080 AT3G62260.2 31.522 92 60 1 37 125 274 365 6.86e-12 62.4

Find 119 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGAGGTGGAGTGTTTA+TGG 0.113064 3_2:-75433619 None:intergenic
AAGGAATGATTTAGAGATTA+AGG 0.193123 3_2:-75436440 None:intergenic
TCTGTTTGTGTTTATGTATT+TGG 0.232802 3_2:-75433639 None:intergenic
GAGAAACCTTGGAGACTATT+TGG 0.260980 3_2:-75433815 None:intergenic
CTTATTATTTCCTAGGAATA+TGG 0.264600 3_2:-75434733 None:intergenic
TGTTAGCATCCGATGGCTTA+TGG 0.271564 3_2:+75436806 Msa0425080:CDS
TGAGGACTAGTTAGCAATTC+TGG 0.276029 3_2:-75435284 None:intergenic
CTGACATGAGGTTGTTAAAA+TGG 0.280042 3_2:+75434550 Msa0425080:five_prime_UTR
AAGTTTGAAGCTAAAGATAA+AGG 0.288053 3_2:-75433535 None:intergenic
GCTTCAAACTTGAAAGCTTT+AGG 0.297676 3_2:+75433547 Msa0425080:five_prime_UTR
TTGCTGTATCCCGTGCATTT+GGG 0.314251 3_2:+75436381 Msa0425080:five_prime_UTR
AAGCTGCTAATTTCACATAT+TGG 0.316833 3_2:+75434753 Msa0425080:five_prime_UTR
ATTGCTGTATCCCGTGCATT+TGG 0.322501 3_2:+75436380 Msa0425080:five_prime_UTR
ATAAATTCCTTTATACTAGA+AGG 0.328668 3_2:-75436459 None:intergenic
TGGAAGATGATATTATTCTT+AGG 0.339370 3_2:+75433792 Msa0425080:five_prime_UTR
AGAGTTACTTGATAAATATC+AGG 0.343230 3_2:-75436760 None:intergenic
TCTTTCGCGGCCGTGTTTGA+TGG 0.343544 3_2:+75433836 Msa0425080:five_prime_UTR
AACATTTAAAAGAAAATATC+AGG 0.346106 3_2:-75437816 None:intergenic
AATCATTCCTTCTAGTATAA+AGG 0.347628 3_2:+75436452 Msa0425080:five_prime_UTR
GAATTGTGTCTATTGGAATC+TGG 0.357830 3_2:+75437652 Msa0425080:CDS
ACCGTTGGAATTGTGTCTAT+TGG 0.358693 3_2:+75437645 Msa0425080:CDS
CAGACTCTCCTCCTATTAGA+TGG 0.360549 3_2:+75433735 Msa0425080:five_prime_UTR
AATCCGTTAAAATCAGTTAG+AGG 0.362802 3_2:+75433423 Msa0425080:five_prime_UTR
ATCCCTTGCACAAGTCGTTT+TGG 0.370646 3_2:+75437091 Msa0425080:CDS
AGCATTATAATTGCCGATCT+AGG 0.371221 3_2:+75437216 Msa0425080:CDS
GATACTGATCCCCATCTAAT+AGG 0.373259 3_2:-75433746 None:intergenic
TTAGCAGCTTATTATTTCCT+AGG 0.379640 3_2:-75434740 None:intergenic
GTTTATGGAGCTTAGTTAAG+AGG 0.385365 3_2:-75433604 None:intergenic
ACTAGTCCTCACCGTCCATA+TGG 0.386128 3_2:+75435296 Msa0425080:five_prime_UTR
GTTAGCATCCGATGGCTTAT+GGG 0.389003 3_2:+75436807 Msa0425080:CDS
AGTTTGAAGCTAAAGATAAA+GGG 0.389037 3_2:-75433534 None:intergenic
ATGGGGATCAGTATCTTTGC+AGG 0.390272 3_2:+75433754 Msa0425080:five_prime_UTR
TTGCTTCTGTCCAGTTCCTC+AGG 0.392143 3_2:+75433870 Msa0425080:five_prime_UTR
TTTAAAGGCTTGAAATGAAA+GGG 0.400684 3_2:+75434676 Msa0425080:five_prime_UTR
GTGAAAAGGATGCTACAAAA+AGG 0.413005 3_2:+75436550 Msa0425080:CDS
ATAGCTAAGACCTGAGGAAC+TGG 0.414366 3_2:-75433880 None:intergenic
GGGGAGGAGGAGGATGAATC+AGG 0.415467 3_2:+75434696 Msa0425080:five_prime_UTR
CACTTAGGAAGCATGTTAAC+AGG 0.423825 3_2:-75436510 None:intergenic
TGAAATGAAAGGGGAGGAGG+AGG 0.428058 3_2:+75434686 Msa0425080:five_prime_UTR
GATATTTATCAAGTAACTCT+TGG 0.438968 3_2:+75436763 Msa0425080:CDS
ATCAAAAGAATCAGAGAAGC+AGG 0.445855 3_2:+75435344 Msa0425080:five_prime_UTR
GGACAGAAAAGTTCATTTCC+CGG 0.447424 3_2:+75436590 Msa0425080:CDS
GCAGGGTCCACGTGAAGAAA+TGG 0.449478 3_2:+75433772 Msa0425080:five_prime_UTR
AAGAGGAATCTTTGTATATG+TGG 0.453079 3_2:-75433587 None:intergenic
GAGGCCTTGTTGCTCCCATA+TGG 0.455386 3_2:-75435311 None:intergenic
TTCCAACGGTGGCTAGGGCT+TGG 0.460560 3_2:-75437632 None:intergenic
TGTGTTTATGTATTTGGAAG+AGG 0.466639 3_2:-75433633 None:intergenic
CACAATTCCAACGGTGGCTA+GGG 0.467000 3_2:-75437637 None:intergenic
GCGGCCGTGTTTGATGGCCA+TGG 0.471142 3_2:+75433842 Msa0425080:five_prime_UTR
GAAGTAAAGAAGTATGCATC+TGG 0.475549 3_2:-75437727 None:intergenic
GCTTGAAATGAAAGGGGAGG+AGG 0.477022 3_2:+75434683 Msa0425080:five_prime_UTR
ATTACCAACGGTAGGATTTG+CGG 0.480678 3_2:+75436353 Msa0425080:five_prime_UTR
CCGTGTTTGATGGCCATGGA+GGG 0.482647 3_2:+75433846 Msa0425080:five_prime_UTR
ACATCTTAGTAGAATCTACT+TGG 0.485502 3_2:+75437781 Msa0425080:three_prime_UTR
ACACAATTCCAACGGTGGCT+AGG 0.491960 3_2:-75437638 None:intergenic
TCTCCAAGGTTTCTCTTTCG+CGG 0.496528 3_2:+75433823 Msa0425080:five_prime_UTR
ACAGCAACTGCCATATTCCT+AGG 0.507970 3_2:+75434723 Msa0425080:five_prime_UTR
AACTTGAAAGCTTTAGGTGA+TGG 0.512962 3_2:+75433553 Msa0425080:five_prime_UTR
CTTAGGCCAAATAGTCTCCA+AGG 0.519183 3_2:+75433809 Msa0425080:five_prime_UTR
GCTTATGGGATTACATGAGC+AGG 0.519531 3_2:+75436821 Msa0425080:CDS
ATGTACACTAAATATTATAC+AGG 0.519730 3_2:-75437753 None:intergenic
CTAGTCCTCACCGTCCATAT+GGG 0.520919 3_2:+75435297 Msa0425080:five_prime_UTR
GAATCAGAGAAGCAGGTGGA+TGG 0.523820 3_2:+75435351 Msa0425080:five_prime_UTR
AAGGAGCTCAGGAAGGAAGA+TGG 0.526606 3_2:+75436569 Msa0425080:CDS
TGCTGTATCCCGTGCATTTG+GGG 0.527648 3_2:+75436382 Msa0425080:five_prime_UTR
GCATTATAATTGCCGATCTA+GGG 0.535217 3_2:+75437217 Msa0425080:CDS
AGACTCTCCTCCTATTAGAT+GGG 0.543447 3_2:+75433736 Msa0425080:five_prime_UTR
TTTATAGTGTTAGCATCCGA+TGG 0.544491 3_2:+75436799 Msa0425080:CDS
AACGGATTGGATTCTCTCGG+TGG 0.545973 3_2:-75433408 None:intergenic
GTGCTTGCAGGAAGACAGAC+TGG 0.546345 3_2:+75437565 Msa0425080:intron
GGAGAGTCTGTCAATGATGA+AGG 0.549099 3_2:-75433722 None:intergenic
CGGCCGCGAAAGAGAAACCT+TGG 0.549935 3_2:-75433826 None:intergenic
GTCCAAGCCCTAGCCACCGT+TGG 0.555090 3_2:+75437630 Msa0425080:CDS
CAATGATGAAGGTGCATCAA+TGG 0.556018 3_2:-75433711 None:intergenic
ACAAAATACATACCCTAGAT+CGG 0.557827 3_2:-75437229 None:intergenic
CTCAGTTCAGATACTGAAGA+AGG 0.558867 3_2:-75433498 None:intergenic
ATCGCATGTCCCCAAATGCA+CGG 0.559501 3_2:-75436391 None:intergenic
TTTAACGGATTGGATTCTCT+CGG 0.562239 3_2:-75433411 None:intergenic
CCCTCCATGGCCATCAAACA+CGG 0.563996 3_2:-75433846 None:intergenic
TGTACAGTTCAAAGATGACT+TGG 0.565147 3_2:+75436726 Msa0425080:intron
AATCAGAGAAGCAGGTGGAT+GGG 0.572153 3_2:+75435352 Msa0425080:five_prime_UTR
GTTTATGTATTTGGAAGAGG+TGG 0.576117 3_2:-75433630 None:intergenic
TGTTGAAGAAGCATTAAAGC+AGG 0.576690 3_2:+75434515 Msa0425080:five_prime_UTR
TCGCATGTCCCCAAATGCAC+GGG 0.578399 3_2:-75436390 None:intergenic
TACCAAAACGACTTGTGCAA+GGG 0.580364 3_2:-75437093 None:intergenic
GAGTGTCTTGAAGCTCTACA+AGG 0.580723 3_2:+75434459 Msa0425080:five_prime_UTR
TTACCAAAACGACTTGTGCA+AGG 0.581838 3_2:-75437094 None:intergenic
TTAAAGGCTTGAAATGAAAG+GGG 0.583830 3_2:+75434677 Msa0425080:five_prime_UTR
ACACTAAATATTATACAGGC+AGG 0.583996 3_2:-75437749 None:intergenic
TCATCTTCCATTTCTTCACG+TGG 0.584276 3_2:-75433779 None:intergenic
CTACAGGGATGAGTTATACA+AGG 0.587623 3_2:+75434437 Msa0425080:intron
GGACAGAAGCAAACCCTCCA+TGG 0.588408 3_2:-75433859 None:intergenic
ATCTCCGCAAATCCTACCGT+TGG 0.588610 3_2:-75436357 None:intergenic
GAGTTACTTGATAAATATCA+GGG 0.596312 3_2:-75436759 None:intergenic
ACTGATCCCCATCTAATAGG+AGG 0.597752 3_2:-75433743 None:intergenic
GTCTTGAAGCTCTACAAGGT+GGG 0.604160 3_2:+75434463 Msa0425080:five_prime_UTR
GCAAAAGGTAGATAACACTT+AGG 0.605615 3_2:-75436525 None:intergenic
CATGTAATCCCATAAGCCAT+CGG 0.609703 3_2:-75436815 None:intergenic
GCCGTGTTTGATGGCCATGG+AGG 0.611537 3_2:+75433845 Msa0425080:five_prime_UTR
AAGGCTTGAAATGAAAGGGG+AGG 0.613590 3_2:+75434680 Msa0425080:five_prime_UTR
TGAAGGTGCATCAATGGCTA+TGG 0.614608 3_2:-75433705 None:intergenic
ACATATTGGTGACTCATCTG+TGG 0.614996 3_2:+75434767 Msa0425080:five_prime_UTR
TGGGGATCAGTATCTTTGCA+GGG 0.616882 3_2:+75433755 Msa0425080:five_prime_UTR
TTCTTTAGATTACCAACGGT+AGG 0.622788 3_2:+75436345 Msa0425080:intron
CCTTGTTGCTCCCATATGGA+CGG 0.623217 3_2:-75435307 None:intergenic
GACTCTCCTCCTATTAGATG+GGG 0.625445 3_2:+75433737 Msa0425080:five_prime_UTR
TGGCTATGGCAGAACAGCAA+CGG 0.629952 3_2:-75433691 None:intergenic
CCGTCCATATGGGAGCAACA+AGG 0.639612 3_2:+75435307 Msa0425080:five_prime_UTR
CATTTGTTAAAGCTGACATG+AGG 0.639772 3_2:+75434538 Msa0425080:five_prime_UTR
TCTGCAGGACCAACGTACAC+AGG 0.646615 3_2:+75437185 Msa0425080:intron
AGGGATCAACTACGAAAACA+TGG 0.647059 3_2:+75436955 Msa0425080:CDS
TCCAATAGACACAATTCCAA+CGG 0.647966 3_2:-75437646 None:intergenic
TTGCTCCCATATGGACGGTG+AGG 0.659175 3_2:-75435302 None:intergenic
AAAAGAATCAGAGAAGCAGG+TGG 0.661475 3_2:+75435347 Msa0425080:five_prime_UTR
TGTCTTGAAGCTCTACAAGG+TGG 0.664593 3_2:+75434462 Msa0425080:five_prime_UTR
AGTTCAGATACTGAAGAAGG+TGG 0.674572 3_2:-75433495 None:intergenic
ACGAAAACATGGAAACACAC+AGG 0.687122 3_2:+75436966 Msa0425080:CDS
AATAGACACAATTCCAACGG+TGG 0.712558 3_2:-75437643 None:intergenic
TGACATTATCCTGTGTACGT+TGG 0.736320 3_2:-75437194 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGAAAATAAAATTC+TGG + chr3_2:75435579-75435598 Msa0425080:intron 10.0%
!! ATTAATTAATTATGTGTGTT+TGG + chr3_2:75433936-75433955 Msa0425080:intron 15.0%
!! TTAATTAATTATGTGTGTTT+GGG + chr3_2:75433937-75433956 Msa0425080:intron 15.0%
!! AAATTTACAAAATCAATACA+AGG - chr3_2:75433984-75434003 None:intergenic 15.0%
!!! TTAATCAATTTTATTCATGT+AGG + chr3_2:75435241-75435260 Msa0425080:intron 15.0%
!!! ATAATTAATCTGATGTTTTA+TGG + chr3_2:75435638-75435657 Msa0425080:intron 15.0%
!!! TAATTAATCTGATGTTTTAT+GGG + chr3_2:75435639-75435658 Msa0425080:intron 15.0%
!!! TCATTTTGAATAATTTGTTT+AGG + chr3_2:75435827-75435846 Msa0425080:intron 15.0%
!!! CTTTTTTAATAATATTGGAT+AGG - chr3_2:75435876-75435895 None:intergenic 15.0%
!!! CATCTCTTTTTTAATAATAT+TGG - chr3_2:75435881-75435900 None:intergenic 15.0%
!! TTTGAATTTCATTGATATTT+AGG + chr3_2:75436104-75436123 Msa0425080:intron 15.0%
!!! TTTTATTTAATTTACCTTGA+TGG + chr3_2:75436226-75436245 Msa0425080:intron 15.0%
!!! TTTTTTTTTTCTTTTCACAA+AGG - chr3_2:75437312-75437331 None:intergenic 15.0%
!! ATTTAATAAAACTCATATTC+TGG + chr3_2:75437343-75437362 Msa0425080:intron 15.0%
!! AACATTTAAAAGAAAATATC+AGG - chr3_2:75437819-75437838 None:intergenic 15.0%
!! TAATTAATTATGTGTGTTTG+GGG + chr3_2:75433938-75433957 Msa0425080:intron 20.0%
!! TAGTTAAATGCTTATAACAT+AGG + chr3_2:75434096-75434115 Msa0425080:intron 20.0%
!!! TTTAAGCTTATTTTCATAAG+TGG - chr3_2:75434161-75434180 None:intergenic 20.0%
!!! ATAACAAATCTAGAATCATT+TGG - chr3_2:75434617-75434636 None:intergenic 20.0%
!!! ATTTGTTATGATTACATTGA+AGG + chr3_2:75434628-75434647 Msa0425080:intron 20.0%
!!! AGACAGTATTTTGTTTTTAA+AGG + chr3_2:75434661-75434680 Msa0425080:intron 20.0%
!!! AAAACCAATTTTGTATTCTT+AGG + chr3_2:75434882-75434901 Msa0425080:intron 20.0%
!!! TTCAAAAAATGGAAAAGTAT+CGG - chr3_2:75435100-75435119 None:intergenic 20.0%
!! ATAAATCATACATTTGACTA+GGG + chr3_2:75435133-75435152 Msa0425080:intron 20.0%
!! ATATAAAAAATGAAGGAACA+AGG - chr3_2:75435386-75435405 None:intergenic 20.0%
!!! AAAGAGCATATAAAAAATGA+AGG - chr3_2:75435393-75435412 None:intergenic 20.0%
!!! AATTAATCTGATGTTTTATG+GGG + chr3_2:75435640-75435659 Msa0425080:intron 20.0%
!! GAAATATATTGTTTCCAATA+AGG + chr3_2:75435725-75435744 Msa0425080:intron 20.0%
!! AAACACAATCCTAATAAAAT+AGG + chr3_2:75436006-75436025 Msa0425080:intron 20.0%
!!! TGATTTCATGATTTTGTTTT+GGG - chr3_2:75436051-75436070 None:intergenic 20.0%
!!! TTGATTTCATGATTTTGTTT+TGG - chr3_2:75436052-75436071 None:intergenic 20.0%
!! TTCAAATTACACTTTATTGA+AGG + chr3_2:75436160-75436179 Msa0425080:intron 20.0%
!! ATAAATTCCTTTATACTAGA+AGG - chr3_2:75436462-75436481 None:intergenic 20.0%
!! ATGTACACTAAATATTATAC+AGG - chr3_2:75437756-75437775 None:intergenic 20.0%
!! AGTTTGAAGCTAAAGATAAA+GGG - chr3_2:75433537-75433556 None:intergenic 25.0%
!! AAGTTTGAAGCTAAAGATAA+AGG - chr3_2:75433538-75433557 None:intergenic 25.0%
! TCTGTTTGTGTTTATGTATT+TGG - chr3_2:75433642-75433661 None:intergenic 25.0%
! TGGAAGATGATATTATTCTT+AGG + chr3_2:75433792-75433811 Msa0425080:five_prime_UTR 25.0%
! TGTTTCTTTATTATGAAAGC+CGG + chr3_2:75434049-75434068 Msa0425080:intron 25.0%
! AATAAAACCACAAATGTGTT+TGG - chr3_2:75434314-75434333 None:intergenic 25.0%
!!! AAACACATTTGTGGTTTTAT+TGG + chr3_2:75434313-75434332 Msa0425080:intron 25.0%
! AAATTCACACGATGATTATA+TGG + chr3_2:75434377-75434396 Msa0425080:intron 25.0%
!!! TTTTAAAGGCTTGAAATGAA+AGG + chr3_2:75434675-75434694 Msa0425080:five_prime_UTR 25.0%
! TTTAAAGGCTTGAAATGAAA+GGG + chr3_2:75434676-75434695 Msa0425080:five_prime_UTR 25.0%
! CTTATTATTTCCTAGGAATA+TGG - chr3_2:75434736-75434755 None:intergenic 25.0%
! ACTACCTAAGAATACAAAAT+TGG - chr3_2:75434889-75434908 None:intergenic 25.0%
! CTACTTACTTAGTTACATAT+CGG + chr3_2:75435034-75435053 Msa0425080:intron 25.0%
! TACTTACTTAGTTACATATC+GGG + chr3_2:75435035-75435054 Msa0425080:intron 25.0%
!!! TCAAAAAATGGAAAAGTATC+GGG - chr3_2:75435099-75435118 None:intergenic 25.0%
! GTTGTAGATACTTCAAAAAA+TGG - chr3_2:75435111-75435130 None:intergenic 25.0%
! CATAAATCATACATTTGACT+AGG + chr3_2:75435132-75435151 Msa0425080:intron 25.0%
! ATCATTCAACTAGAATATCT+AGG + chr3_2:75435191-75435210 Msa0425080:intron 25.0%
! TCATTCAACTAGAATATCTA+GGG + chr3_2:75435192-75435211 Msa0425080:intron 25.0%
!!! TTTTATATGCTCTTTGAGTT+TGG + chr3_2:75435398-75435417 Msa0425080:intron 25.0%
!!! TTGAGTTTGGTCAATTTTTT+TGG + chr3_2:75435411-75435430 Msa0425080:intron 25.0%
!!! TTTTTGGTTTTAAAGAGTCT+AGG + chr3_2:75435427-75435446 Msa0425080:intron 25.0%
! GTCAAAAAGACATCAATTTA+TGG + chr3_2:75435766-75435785 Msa0425080:intron 25.0%
! AGAAATAACAAAAACAGTTG+AGG + chr3_2:75435904-75435923 Msa0425080:intron 25.0%
! GAAATAACAAAAACAGTTGA+GGG + chr3_2:75435905-75435924 Msa0425080:intron 25.0%
! AAATAACAAAAACAGTTGAG+GGG + chr3_2:75435906-75435925 Msa0425080:intron 25.0%
!!! TTTTTGCTTTTGTTTGAGTT+TGG - chr3_2:75435938-75435957 None:intergenic 25.0%
! CTAATATCCAACTACAAATT+AGG + chr3_2:75436074-75436093 Msa0425080:intron 25.0%
!! TTGAAGGTCATTCTTTTAAT+TGG + chr3_2:75436176-75436195 Msa0425080:intron 25.0%
!!! TGAAGGTCATTCTTTTAATT+GGG + chr3_2:75436177-75436196 Msa0425080:intron 25.0%
! AAGGAATGATTTAGAGATTA+AGG - chr3_2:75436443-75436462 None:intergenic 25.0%
! AATCATTCCTTCTAGTATAA+AGG + chr3_2:75436452-75436471 Msa0425080:five_prime_UTR 25.0%
! GAGTTACTTGATAAATATCA+GGG - chr3_2:75436762-75436781 None:intergenic 25.0%
! AGAGTTACTTGATAAATATC+AGG - chr3_2:75436763-75436782 None:intergenic 25.0%
! GATATTTATCAAGTAACTCT+TGG + chr3_2:75436763-75436782 Msa0425080:CDS 25.0%
! TGCCAAAAACTTTATATTTG+AGG + chr3_2:75436991-75437010 Msa0425080:intron 25.0%
!! TGCCTCAAATATAAAGTTTT+TGG - chr3_2:75436996-75437015 None:intergenic 25.0%
! TTGTCATGTATATATGACTT+TGG + chr3_2:75437248-75437267 Msa0425080:intron 25.0%
! TTGTTTAAATCCTAAACCTT+TGG - chr3_2:75437420-75437439 None:intergenic 25.0%
!! TCTAACTGATTTTAACGGAT+TGG - chr3_2:75433424-75433443 None:intergenic 30.0%
AATCCGTTAAAATCAGTTAG+AGG + chr3_2:75433423-75433442 Msa0425080:five_prime_UTR 30.0%
!! AAGCCTCTAACTGATTTTAA+CGG - chr3_2:75433429-75433448 None:intergenic 30.0%
AAGAGGAATCTTTGTATATG+TGG - chr3_2:75433590-75433609 None:intergenic 30.0%
TGTGTTTATGTATTTGGAAG+AGG - chr3_2:75433636-75433655 None:intergenic 30.0%
TAAGCTAACAAACATGAGAA+AGG - chr3_2:75433916-75433935 None:intergenic 30.0%
CTTATCCAAACAAATTACAC+CGG - chr3_2:75434071-75434090 None:intergenic 30.0%
AATAAGCTTAAAACAGCTCA+TGG + chr3_2:75434169-75434188 Msa0425080:intron 30.0%
AGATTGTTTGGAAAAGCTTA+TGG - chr3_2:75434215-75434234 None:intergenic 30.0%
CCAAATTTACACTAAGCTTT+AGG - chr3_2:75434289-75434308 None:intergenic 30.0%
CCTAAAGCTTAGTGTAAATT+TGG + chr3_2:75434286-75434305 Msa0425080:intron 30.0%
! GACACGTTTTATGTATTAAC+TGG - chr3_2:75434580-75434599 None:intergenic 30.0%
TTAAAGGCTTGAAATGAAAG+GGG + chr3_2:75434677-75434696 Msa0425080:five_prime_UTR 30.0%
TTAGCAGCTTATTATTTCCT+AGG - chr3_2:75434743-75434762 None:intergenic 30.0%
AAGCTGCTAATTTCACATAT+TGG + chr3_2:75434753-75434772 Msa0425080:five_prime_UTR 30.0%
CTAAAGACACAAATGTCATT+TGG - chr3_2:75434935-75434954 None:intergenic 30.0%
ATGACATTTGTGTCTTTAGT+TGG + chr3_2:75434936-75434955 Msa0425080:intron 30.0%
! TATCAGACATGTATCGATAT+TGG + chr3_2:75435061-75435080 Msa0425080:intron 30.0%
!! CAAAAAATGGAAAAGTATCG+GGG - chr3_2:75435098-75435117 None:intergenic 30.0%
CATTCAACTAGAATATCTAG+GGG + chr3_2:75435193-75435212 Msa0425080:intron 30.0%
!!! TCTTTTGATTTCTTGAAGAG+AGG - chr3_2:75435333-75435352 None:intergenic 30.0%
AAAATCACACTTACAAAGTG+TGG + chr3_2:75435454-75435473 Msa0425080:intron 30.0%
ATTATGAGTTGTGACAACTT+AGG + chr3_2:75435609-75435628 Msa0425080:intron 30.0%
! AATTGATGTCTTTTTGACAG+TGG - chr3_2:75435764-75435783 None:intergenic 30.0%
TCAGGTGATAGGAAATTAAT+TGG + chr3_2:75435804-75435823 Msa0425080:intron 30.0%
!!! AGGATTGTGTTTTTAGAGAT+AGG - chr3_2:75435998-75436017 None:intergenic 30.0%
CCTAATAAAATAGGACAGTT+CGG + chr3_2:75436015-75436034 Msa0425080:intron 30.0%
GACAACGTTCATTTCAAAAA+TGG - chr3_2:75436264-75436283 None:intergenic 30.0%
CGTGCTTTCATTATATAGAA+CGG - chr3_2:75436288-75436307 None:intergenic 30.0%
! CCTTTTCTTTAGATTACCAA+CGG + chr3_2:75436341-75436360 Msa0425080:intron 30.0%
ACATACATAAGATTACCTAC+CGG - chr3_2:75436612-75436631 None:intergenic 30.0%
GAACAAGCAGAATATTATTG+CGG - chr3_2:75437051-75437070 None:intergenic 30.0%
ACAAAATACATACCCTAGAT+CGG - chr3_2:75437232-75437251 None:intergenic 30.0%
CAGCAATTACGTTCTATAAT+TGG + chr3_2:75437275-75437294 Msa0425080:intron 30.0%
TAAAACTCATATTCTGGTCA+TGG + chr3_2:75437349-75437368 Msa0425080:intron 30.0%
! ATATCACTAGAGCATTAATG+TGG + chr3_2:75437393-75437412 Msa0425080:intron 30.0%
ACACTAAATATTATACAGGC+AGG - chr3_2:75437752-75437771 None:intergenic 30.0%
ACATCTTAGTAGAATCTACT+TGG + chr3_2:75437781-75437800 Msa0425080:three_prime_UTR 30.0%
!! TTTAACGGATTGGATTCTCT+CGG - chr3_2:75433414-75433433 None:intergenic 35.0%
GCTTCAAACTTGAAAGCTTT+AGG + chr3_2:75433547-75433566 Msa0425080:five_prime_UTR 35.0%
!! AACTTGAAAGCTTTAGGTGA+TGG + chr3_2:75433553-75433572 Msa0425080:five_prime_UTR 35.0%
GTTTATGGAGCTTAGTTAAG+AGG - chr3_2:75433607-75433626 None:intergenic 35.0%
GTTTATGTATTTGGAAGAGG+TGG - chr3_2:75433633-75433652 None:intergenic 35.0%
TTGAATATAGCTAAGACCTG+AGG - chr3_2:75433889-75433908 None:intergenic 35.0%
TGAACACTAGTGAGATTGTT+TGG - chr3_2:75434227-75434246 None:intergenic 35.0%
!! ACTAAGCTTTAGGACATGTT+TGG - chr3_2:75434279-75434298 None:intergenic 35.0%
! TTTGGAACCAAACACATTTG+TGG + chr3_2:75434304-75434323 Msa0425080:intron 35.0%
! ATCGTGTGAATTTGCTCTTA+TGG - chr3_2:75434370-75434389 None:intergenic 35.0%
!! TGTTGAAGAAGCATTAAAGC+AGG + chr3_2:75434515-75434534 Msa0425080:five_prime_UTR 35.0%
! CATTTGTTAAAGCTGACATG+AGG + chr3_2:75434538-75434557 Msa0425080:five_prime_UTR 35.0%
CTGACATGAGGTTGTTAAAA+TGG + chr3_2:75434550-75434569 Msa0425080:five_prime_UTR 35.0%
!! GTTTTATGAGAGGCACAATA+AGG - chr3_2:75434810-75434829 None:intergenic 35.0%
! CATTGTGCATGTTTTATGAG+AGG - chr3_2:75434820-75434839 None:intergenic 35.0%
!!! TTGGTTTTGTGACACATTCA+TGG - chr3_2:75434870-75434889 None:intergenic 35.0%
CTTAGGTAGTAATGTATCGA+AGG + chr3_2:75434899-75434918 Msa0425080:intron 35.0%
!! ATGTAGGTTTTATGCAGATC+TGG + chr3_2:75435257-75435276 Msa0425080:intron 35.0%
ATCAAAAGAATCAGAGAAGC+AGG + chr3_2:75435344-75435363 Msa0425080:five_prime_UTR 35.0%
CACTTGGTAAAACTAGGAAA+TGG - chr3_2:75435680-75435699 None:intergenic 35.0%
AACAATCAAACCACAACACT+TGG - chr3_2:75435696-75435715 None:intergenic 35.0%
GTAACTGATTGGAACCTTAT+TGG - chr3_2:75435742-75435761 None:intergenic 35.0%
! TTTTGACAGTGGTAACTGAT+TGG - chr3_2:75435753-75435772 None:intergenic 35.0%
TTAATTTCCTATCACCTGAC+AGG - chr3_2:75435803-75435822 None:intergenic 35.0%
! CCGAACTGTCCTATTTTATT+AGG - chr3_2:75436018-75436037 None:intergenic 35.0%
! ATGAGCACCTAATTTGTAGT+TGG - chr3_2:75436084-75436103 None:intergenic 35.0%
!! GGTCATTCTTTTAATTGGGT+TGG + chr3_2:75436181-75436200 Msa0425080:intron 35.0%
!!! TTACCTTGATGGTGCAATTT+TGG + chr3_2:75436237-75436256 Msa0425080:intron 35.0%
! TATAATGAAAGCACGTTGCA+TGG + chr3_2:75436293-75436312 Msa0425080:intron 35.0%
!! CCGTTGGTAATCTAAAGAAA+AGG - chr3_2:75436344-75436363 None:intergenic 35.0%
TTCTTTAGATTACCAACGGT+AGG + chr3_2:75436345-75436364 Msa0425080:intron 35.0%
GCAAAAGGTAGATAACACTT+AGG - chr3_2:75436528-75436547 None:intergenic 35.0%
GTGAAAAGGATGCTACAAAA+AGG + chr3_2:75436550-75436569 Msa0425080:CDS 35.0%
CATACATAAGATTACCTACC+GGG - chr3_2:75436611-75436630 None:intergenic 35.0%
TGTACAGTTCAAAGATGACT+TGG + chr3_2:75436726-75436745 Msa0425080:intron 35.0%
TTTATAGTGTTAGCATCCGA+TGG + chr3_2:75436799-75436818 Msa0425080:CDS 35.0%
! AGGGTAGCAGAAATGATTTT+GGG - chr3_2:75436861-75436880 None:intergenic 35.0%
! AAGGGTAGCAGAAATGATTT+TGG - chr3_2:75436862-75436881 None:intergenic 35.0%
!!! TTCTGCTACCCTTCTTTTTT+TGG + chr3_2:75436869-75436888 Msa0425080:intron 35.0%
ATTGTGAAGGTAATTCTCTG+CGG - chr3_2:75436897-75436916 None:intergenic 35.0%
AGCATTATAATTGCCGATCT+AGG + chr3_2:75437216-75437235 Msa0425080:CDS 35.0%
GCATTATAATTGCCGATCTA+GGG + chr3_2:75437217-75437236 Msa0425080:CDS 35.0%
!! TTCTTTTCACAAAGGCATAG+CGG - chr3_2:75437304-75437323 None:intergenic 35.0%
TTAATGTGGTCCAAAGGTTT+AGG + chr3_2:75437407-75437426 Msa0425080:intron 35.0%
AGCACTCAATATAAAACGCA+TGG - chr3_2:75437550-75437569 None:intergenic 35.0%
! GTTTTATATTGAGTGCTTGC+AGG + chr3_2:75437553-75437572 Msa0425080:intron 35.0%
TCCAATAGACACAATTCCAA+CGG - chr3_2:75437649-75437668 None:intergenic 35.0%
GAATTGTGTCTATTGGAATC+TGG + chr3_2:75437652-75437671 Msa0425080:CDS 35.0%
! GAAGTAAAGAAGTATGCATC+TGG - chr3_2:75437730-75437749 None:intergenic 35.0%
AGTTCAGATACTGAAGAAGG+TGG - chr3_2:75433498-75433517 None:intergenic 40.0%
CTCAGTTCAGATACTGAAGA+AGG - chr3_2:75433501-75433520 None:intergenic 40.0%
! CAATGATGAAGGTGCATCAA+TGG - chr3_2:75433714-75433733 None:intergenic 40.0%
AGACTCTCCTCCTATTAGAT+GGG + chr3_2:75433736-75433755 Msa0425080:five_prime_UTR 40.0%
GATACTGATCCCCATCTAAT+AGG - chr3_2:75433749-75433768 None:intergenic 40.0%
TCATCTTCCATTTCTTCACG+TGG - chr3_2:75433782-75433801 None:intergenic 40.0%
GAGAAACCTTGGAGACTATT+TGG - chr3_2:75433818-75433837 None:intergenic 40.0%
!! GAAAGCCGGTGTAATTTGTT+TGG + chr3_2:75434063-75434082 Msa0425080:intron 40.0%
!! GCTTTAGGACATGTTTGGAT+TGG - chr3_2:75434274-75434293 None:intergenic 40.0%
GTATAACTCATCCCTGTAGT+TGG - chr3_2:75434436-75434455 None:intergenic 40.0%
CTACAGGGATGAGTTATACA+AGG + chr3_2:75434437-75434456 Msa0425080:intron 40.0%
! ACATATTGGTGACTCATCTG+TGG + chr3_2:75434767-75434786 Msa0425080:five_prime_UTR 40.0%
! TATGAGAGGCACAATAAGGA+TGG - chr3_2:75434806-75434825 None:intergenic 40.0%
!! TGAGGACTAGTTAGCAATTC+TGG - chr3_2:75435287-75435306 None:intergenic 40.0%
AAAAGAATCAGAGAAGCAGG+TGG + chr3_2:75435347-75435366 Msa0425080:five_prime_UTR 40.0%
ACTTACAAAGTGTGGAGAAG+AGG + chr3_2:75435462-75435481 Msa0425080:intron 40.0%
CTTACAAAGTGTGGAGAAGA+GGG + chr3_2:75435463-75435482 Msa0425080:intron 40.0%
AAGTCAGCTTAGACGGTAAA+AGG - chr3_2:75435537-75435556 None:intergenic 40.0%
! TTACCGTCTAAGCTGACTTT+CGG + chr3_2:75435538-75435557 Msa0425080:intron 40.0%
AGTTGTGACAACTTAGGATG+TGG + chr3_2:75435615-75435634 Msa0425080:intron 40.0%
CCACAACACTTGGTAAAACT+AGG - chr3_2:75435686-75435705 None:intergenic 40.0%
!!! CCTAGTTTTACCAAGTGTTG+TGG + chr3_2:75435683-75435702 Msa0425080:intron 40.0%
ATTACCAACGGTAGGATTTG+CGG + chr3_2:75436353-75436372 Msa0425080:five_prime_UTR 40.0%
! CACTTAGGAAGCATGTTAAC+AGG - chr3_2:75436513-75436532 None:intergenic 40.0%
! TCTACCTTTTGCGTGTGAAA+AGG + chr3_2:75436536-75436555 Msa0425080:CDS 40.0%
GGACAGAAAAGTTCATTTCC+CGG + chr3_2:75436590-75436609 Msa0425080:CDS 40.0%
AGAAAAGTTCATTTCCCGGT+AGG + chr3_2:75436594-75436613 Msa0425080:intron 40.0%
GTCATCTTTGAACTGTACAC+TGG - chr3_2:75436725-75436744 None:intergenic 40.0%
CATGTAATCCCATAAGCCAT+CGG - chr3_2:75436818-75436837 None:intergenic 40.0%
! GGGTAGCAGAAATGATTTTG+GGG - chr3_2:75436860-75436879 None:intergenic 40.0%
CTGCGGAACCAAAAAAAGAA+GGG - chr3_2:75436880-75436899 None:intergenic 40.0%
TCTGCGGAACCAAAAAAAGA+AGG - chr3_2:75436881-75436900 None:intergenic 40.0%
CAAGGATAGCAAGATTGTGA+AGG - chr3_2:75436910-75436929 None:intergenic 40.0%
! AGACGCAGTTTCTTTTGTGA+GGG + chr3_2:75436936-75436955 Msa0425080:CDS 40.0%
AGGGATCAACTACGAAAACA+TGG + chr3_2:75436955-75436974 Msa0425080:CDS 40.0%
ACGAAAACATGGAAACACAC+AGG + chr3_2:75436966-75436985 Msa0425080:CDS 40.0%
TACCAAAACGACTTGTGCAA+GGG - chr3_2:75437096-75437115 None:intergenic 40.0%
TTACCAAAACGACTTGTGCA+AGG - chr3_2:75437097-75437116 None:intergenic 40.0%
TCCATTATGATACACTCTGC+AGG + chr3_2:75437170-75437189 Msa0425080:intron 40.0%
TCCTGCAGAGTGTATCATAA+TGG - chr3_2:75437174-75437193 None:intergenic 40.0%
TGACATTATCCTGTGTACGT+TGG - chr3_2:75437197-75437216 None:intergenic 40.0%
! AGAGCATTAATGTGGTCCAA+AGG + chr3_2:75437401-75437420 Msa0425080:intron 40.0%
AATAGACACAATTCCAACGG+TGG - chr3_2:75437646-75437665 None:intergenic 40.0%
ACCGTTGGAATTGTGTCTAT+TGG + chr3_2:75437645-75437664 Msa0425080:CDS 40.0%
! TGGAAGAGGTGGAGTGTTTA+TGG - chr3_2:75433622-75433641 None:intergenic 45.0%
! TGAAGGTGCATCAATGGCTA+TGG - chr3_2:75433708-75433727 None:intergenic 45.0%
GGAGAGTCTGTCAATGATGA+AGG - chr3_2:75433725-75433744 None:intergenic 45.0%
CAGACTCTCCTCCTATTAGA+TGG + chr3_2:75433735-75433754 Msa0425080:five_prime_UTR 45.0%
GACTCTCCTCCTATTAGATG+GGG + chr3_2:75433737-75433756 Msa0425080:five_prime_UTR 45.0%
ACTGATCCCCATCTAATAGG+AGG - chr3_2:75433746-75433765 None:intergenic 45.0%
ATGGGGATCAGTATCTTTGC+AGG + chr3_2:75433754-75433773 Msa0425080:five_prime_UTR 45.0%
TGGGGATCAGTATCTTTGCA+GGG + chr3_2:75433755-75433774 Msa0425080:five_prime_UTR 45.0%
CTTAGGCCAAATAGTCTCCA+AGG + chr3_2:75433809-75433828 Msa0425080:five_prime_UTR 45.0%
TCTCCAAGGTTTCTCTTTCG+CGG + chr3_2:75433823-75433842 Msa0425080:five_prime_UTR 45.0%
ATAGCTAAGACCTGAGGAAC+TGG - chr3_2:75433883-75433902 None:intergenic 45.0%
ATGTGCCAAATGCCAACTAC+AGG + chr3_2:75434421-75434440 Msa0425080:intron 45.0%
TGTGCCAAATGCCAACTACA+GGG + chr3_2:75434422-75434441 Msa0425080:intron 45.0%
TCATCCCTGTAGTTGGCATT+TGG - chr3_2:75434429-75434448 None:intergenic 45.0%
GAGTGTCTTGAAGCTCTACA+AGG + chr3_2:75434459-75434478 Msa0425080:five_prime_UTR 45.0%
TGTCTTGAAGCTCTACAAGG+TGG + chr3_2:75434462-75434481 Msa0425080:five_prime_UTR 45.0%
GTCTTGAAGCTCTACAAGGT+GGG + chr3_2:75434463-75434482 Msa0425080:five_prime_UTR 45.0%
AAGGCTTGAAATGAAAGGGG+AGG + chr3_2:75434680-75434699 Msa0425080:five_prime_UTR 45.0%
ACAGCAACTGCCATATTCCT+AGG + chr3_2:75434723-75434742 Msa0425080:five_prime_UTR 45.0%
AATCAGAGAAGCAGGTGGAT+GGG + chr3_2:75435352-75435371 Msa0425080:five_prime_UTR 45.0%
AGTGTGGAGAAGAGGGTTAT+TGG + chr3_2:75435470-75435489 Msa0425080:intron 45.0%
GTGTGGAGAAGAGGGTTATT+GGG + chr3_2:75435471-75435490 Msa0425080:intron 45.0%
TGTGGAGAAGAGGGTTATTG+GGG + chr3_2:75435472-75435491 Msa0425080:intron 45.0%
CGGAGACATTTGATGTGTTG+GGG - chr3_2:75435511-75435530 None:intergenic 45.0%
GCGGAGACATTTGATGTGTT+GGG - chr3_2:75435512-75435531 None:intergenic 45.0%
TGCGGAGACATTTGATGTGT+TGG - chr3_2:75435513-75435532 None:intergenic 45.0%
GCTTAGACGGTAAAAGGTTG+CGG - chr3_2:75435531-75435550 None:intergenic 45.0%
! TACCGTCTAAGCTGACTTTC+GGG + chr3_2:75435539-75435558 Msa0425080:intron 45.0%
GGTCCAAAATTGCACCATCA+AGG - chr3_2:75436243-75436262 None:intergenic 45.0%
ATTGCTGTATCCCGTGCATT+TGG + chr3_2:75436380-75436399 Msa0425080:five_prime_UTR 45.0%
TTGCTGTATCCCGTGCATTT+GGG + chr3_2:75436381-75436400 Msa0425080:five_prime_UTR 45.0%
! GCATCCTTTTCACACGCAAA+AGG - chr3_2:75436543-75436562 None:intergenic 45.0%
GATGCTACAAAAAGGAGCTC+AGG + chr3_2:75436558-75436577 Msa0425080:CDS 45.0%
CTACAAAAAGGAGCTCAGGA+AGG + chr3_2:75436562-75436581 Msa0425080:CDS 45.0%
TGTTAGCATCCGATGGCTTA+TGG + chr3_2:75436806-75436825 Msa0425080:CDS 45.0%
GTTAGCATCCGATGGCTTAT+GGG + chr3_2:75436807-75436826 Msa0425080:CDS 45.0%
GCTTATGGGATTACATGAGC+AGG + chr3_2:75436821-75436840 Msa0425080:CDS 45.0%
! CAGACGCAGTTTCTTTTGTG+AGG + chr3_2:75436935-75436954 Msa0425080:CDS 45.0%
TATTATTGCGGCTGCTTCGA+TGG - chr3_2:75437039-75437058 None:intergenic 45.0%
! ATCCCTTGCACAAGTCGTTT+TGG + chr3_2:75437091-75437110 Msa0425080:CDS 45.0%
! GTGACATTTTGTTGCTGCAG+TGG - chr3_2:75437600-75437619 None:intergenic 45.0%
TGGCTATGGCAGAACAGCAA+CGG - chr3_2:75433694-75433713 None:intergenic 50.0%
TTGCTTCTGTCCAGTTCCTC+AGG + chr3_2:75433870-75433889 Msa0425080:five_prime_UTR 50.0%
GCTTGAAATGAAAGGGGAGG+AGG + chr3_2:75434683-75434702 Msa0425080:five_prime_UTR 50.0%
TGAAATGAAAGGGGAGGAGG+AGG + chr3_2:75434686-75434705 Msa0425080:five_prime_UTR 50.0%
ACTAGTCCTCACCGTCCATA+TGG + chr3_2:75435296-75435315 Msa0425080:five_prime_UTR 50.0%
CTAGTCCTCACCGTCCATAT+GGG + chr3_2:75435297-75435316 Msa0425080:five_prime_UTR 50.0%
CCTTGTTGCTCCCATATGGA+CGG - chr3_2:75435310-75435329 None:intergenic 50.0%
GAATCAGAGAAGCAGGTGGA+TGG + chr3_2:75435351-75435370 Msa0425080:five_prime_UTR 50.0%
ACATTTGATGTGTTGGGGCG+TGG - chr3_2:75435506-75435525 None:intergenic 50.0%
GTCCCGAAAGTCAGCTTAGA+CGG - chr3_2:75435544-75435563 None:intergenic 50.0%
! TAAGCTGACTTTCGGGACTC+TGG + chr3_2:75435546-75435565 Msa0425080:intron 50.0%
CTATCACCTGACAGGCTAAC+GGG - chr3_2:75435795-75435814 None:intergenic 50.0%
CCTATCACCTGACAGGCTAA+CGG - chr3_2:75435796-75435815 None:intergenic 50.0%
ATCTCCGCAAATCCTACCGT+TGG - chr3_2:75436360-75436379 None:intergenic 50.0%
TGCTGTATCCCGTGCATTTG+GGG + chr3_2:75436382-75436401 Msa0425080:five_prime_UTR 50.0%
ATCGCATGTCCCCAAATGCA+CGG - chr3_2:75436394-75436413 None:intergenic 50.0%
AAGGAGCTCAGGAAGGAAGA+TGG + chr3_2:75436569-75436588 Msa0425080:CDS 50.0%
!! CATGTTGCACAGAAGTGCTC+TGG + chr3_2:75437456-75437475 Msa0425080:intron 50.0%
CACAATTCCAACGGTGGCTA+GGG - chr3_2:75437640-75437659 None:intergenic 50.0%
ACACAATTCCAACGGTGGCT+AGG - chr3_2:75437641-75437660 None:intergenic 50.0%
GCAGGGTCCACGTGAAGAAA+TGG + chr3_2:75433772-75433791 Msa0425080:five_prime_UTR 55.0%
TCTTTCGCGGCCGTGTTTGA+TGG + chr3_2:75433836-75433855 Msa0425080:five_prime_UTR 55.0%
CCCTCCATGGCCATCAAACA+CGG - chr3_2:75433849-75433868 None:intergenic 55.0%
! CCGTGTTTGATGGCCATGGA+GGG + chr3_2:75433846-75433865 Msa0425080:five_prime_UTR 55.0%
GGACAGAAGCAAACCCTCCA+TGG - chr3_2:75433862-75433881 None:intergenic 55.0%
TTGCTCCCATATGGACGGTG+AGG - chr3_2:75435305-75435324 None:intergenic 55.0%
CCGTCCATATGGGAGCAACA+AGG + chr3_2:75435307-75435326 Msa0425080:five_prime_UTR 55.0%
!! GAGGCCTTGTTGCTCCCATA+TGG - chr3_2:75435314-75435333 None:intergenic 55.0%
! CCGTTAGCCTGTCAGGTGAT+AGG + chr3_2:75435793-75435812 Msa0425080:intron 55.0%
TCGCATGTCCCCAAATGCAC+GGG - chr3_2:75436393-75436412 None:intergenic 55.0%
GAAACTGCGTCTGAGCTGCA+AGG - chr3_2:75436928-75436947 None:intergenic 55.0%
TCTGCAGGACCAACGTACAC+AGG + chr3_2:75437185-75437204 Msa0425080:intron 55.0%
GTGCTTGCAGGAAGACAGAC+TGG + chr3_2:75437565-75437584 Msa0425080:intron 55.0%
CGGCCGCGAAAGAGAAACCT+TGG - chr3_2:75433829-75433848 None:intergenic 60.0%
! GCCGTGTTTGATGGCCATGG+AGG + chr3_2:75433845-75433864 Msa0425080:five_prime_UTR 60.0%
GGGGAGGAGGAGGATGAATC+AGG + chr3_2:75434696-75434715 Msa0425080:five_prime_UTR 60.0%
! TGGTCTCCCGTTAGCCTGTC+AGG + chr3_2:75435786-75435805 Msa0425080:intron 60.0%
TTCCAACGGTGGCTAGGGCT+TGG - chr3_2:75437635-75437654 None:intergenic 60.0%
! GCGGCCGTGTTTGATGGCCA+TGG + chr3_2:75433842-75433861 Msa0425080:five_prime_UTR 65.0%
GTCCAAGCCCTAGCCACCGT+TGG + chr3_2:75437630-75437649 Msa0425080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 75433411 75437897 75433411 ID=Msa0425080;Name=Msa0425080
chr3_2 mRNA 75433411 75437897 75433411 ID=Msa0425080-mRNA-1;Parent=Msa0425080;Name=Msa0425080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1009|0.88|0.9|1|0.77|0.7|10|199|153
chr3_2 exon 75433411 75433891 75433411 ID=Msa0425080-mRNA-1:exon:19285;Parent=Msa0425080-mRNA-1
chr3_2 exon 75434443 75434571 75434443 ID=Msa0425080-mRNA-1:exon:19286;Parent=Msa0425080-mRNA-1
chr3_2 exon 75434667 75434788 75434667 ID=Msa0425080-mRNA-1:exon:19287;Parent=Msa0425080-mRNA-1
chr3_2 exon 75435263 75435373 75435263 ID=Msa0425080-mRNA-1:exon:19288;Parent=Msa0425080-mRNA-1
chr3_2 exon 75436353 75436611 75436353 ID=Msa0425080-mRNA-1:exon:19289;Parent=Msa0425080-mRNA-1
chr3_2 exon 75436733 75436842 75436733 ID=Msa0425080-mRNA-1:exon:19290;Parent=Msa0425080-mRNA-1
chr3_2 exon 75436933 75436987 75436933 ID=Msa0425080-mRNA-1:exon:19291;Parent=Msa0425080-mRNA-1
chr3_2 exon 75437080 75437112 75437080 ID=Msa0425080-mRNA-1:exon:19292;Parent=Msa0425080-mRNA-1
chr3_2 exon 75437192 75437238 75437192 ID=Msa0425080-mRNA-1:exon:19293;Parent=Msa0425080-mRNA-1
chr3_2 exon 75437575 75437897 75437575 ID=Msa0425080-mRNA-1:exon:19294;Parent=Msa0425080-mRNA-1
chr3_2 five_prime_UTR 75433411 75433891 75433411 ID=Msa0425080-mRNA-1:five_prime_utr;Parent=Msa0425080-mRNA-1
chr3_2 five_prime_UTR 75434443 75434571 75434443 ID=Msa0425080-mRNA-1:five_prime_utr;Parent=Msa0425080-mRNA-1
chr3_2 five_prime_UTR 75434667 75434788 75434667 ID=Msa0425080-mRNA-1:five_prime_utr;Parent=Msa0425080-mRNA-1
chr3_2 five_prime_UTR 75435263 75435373 75435263 ID=Msa0425080-mRNA-1:five_prime_utr;Parent=Msa0425080-mRNA-1
chr3_2 five_prime_UTR 75436353 75436518 75436353 ID=Msa0425080-mRNA-1:five_prime_utr;Parent=Msa0425080-mRNA-1
chr3_2 CDS 75436519 75436611 75436519 ID=Msa0425080-mRNA-1:cds;Parent=Msa0425080-mRNA-1
chr3_2 CDS 75436733 75436842 75436733 ID=Msa0425080-mRNA-1:cds;Parent=Msa0425080-mRNA-1
chr3_2 CDS 75436933 75436987 75436933 ID=Msa0425080-mRNA-1:cds;Parent=Msa0425080-mRNA-1
chr3_2 CDS 75437080 75437112 75437080 ID=Msa0425080-mRNA-1:cds;Parent=Msa0425080-mRNA-1
chr3_2 CDS 75437192 75437238 75437192 ID=Msa0425080-mRNA-1:cds;Parent=Msa0425080-mRNA-1
chr3_2 CDS 75437575 75437698 75437575 ID=Msa0425080-mRNA-1:cds;Parent=Msa0425080-mRNA-1
chr3_2 three_prime_UTR 75437699 75437897 75437699 ID=Msa0425080-mRNA-1:three_prime_utr;Parent=Msa0425080-mRNA-1
Gene Sequence

>Msa0425080

ATGCTTCCTAAGTGTTATCTACCTTTTGCGTGTGAAAAGGATGCTACAAAAAGGAGCTCAGGAAGGAAGATGGACAGAAAAGTTCATTTCCCGTTCAAAGATGACTTGGTTGTTGCACGCCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTATAGTGTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGACGCAGTTTCTTTTGTGAGGGATCAACTACGAAAACATGGAAACACACAGCTAGCTTGTGAATCCCTTGCACAAGTCGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGACTGGAAGAGTGTACCACTGCAGCAACAAAATGTCACATTTGAGCTAGTCCAAGCCCTAGCCACCGTTGGAATTGTGTCTATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG

Protein sequence

>Msa0425080

MLPKCYLPFACEKDATKRSSGRKMDRKVHFPFKDDLVVARPDIYQVTLGSDAEFIVLASDGLWDYMSSSDAVSFVRDQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKSVPLQQQNVTFELVQALATVGIVSIGIWFSSQLSL*