Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298810 | XP_013457775.1 | 97.708 | 349 | 8 | 0 | 1 | 349 | 1 | 349 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298810 | sp|A0A078ISJ6|TC32B_BRANA | 47.727 | 308 | 157 | 2 | 19 | 326 | 7 | 310 | 1.06e-91 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298810 | A0A072UR37 | 97.708 | 349 | 8 | 0 | 1 | 349 | 1 | 349 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1298810 | 0.807585 | 4.703388e-50 | -8.615850e-47 |
| Msa0001940 | Msa1298810 | 0.802917 | 4.468100e-49 | -8.615850e-47 |
| Msa0024550 | Msa1298810 | 0.810816 | 9.551553e-51 | -8.615850e-47 |
| Msa0027820 | Msa1298810 | 0.820233 | 7.641547e-53 | -8.615850e-47 |
| Msa0061340 | Msa1298810 | 0.810929 | 9.028060e-51 | -8.615850e-47 |
| Msa0063890 | Msa1298810 | 0.801872 | 7.334341e-49 | -8.615850e-47 |
| Msa0081520 | Msa1298810 | 0.808875 | 2.498196e-50 | -8.615850e-47 |
| Msa0097770 | Msa1298810 | 0.801427 | 9.052209e-49 | -8.615850e-47 |
| Msa0101440 | Msa1298810 | 0.800135 | 1.661324e-48 | -8.615850e-47 |
| Msa0120400 | Msa1298810 | 0.815410 | 9.375717e-52 | -8.615850e-47 |
| Msa0611210 | Msa1298810 | 0.802467 | 5.532882e-49 | -8.615850e-47 |
| Msa0623330 | Msa1298810 | 0.807140 | 5.844719e-50 | -8.615850e-47 |
| Msa0626450 | Msa1298810 | 0.824276 | 8.810851e-54 | -8.615850e-47 |
| Msa0626490 | Msa1298810 | 0.820395 | 7.017435e-53 | -8.615850e-47 |
| Msa0626510 | Msa1298810 | 0.814846 | 1.251406e-51 | -8.615850e-47 |
| Msa0651550 | Msa1298810 | 0.802716 | 4.916449e-49 | -8.615850e-47 |
| Msa0664600 | Msa1298810 | 0.826521 | 2.592480e-54 | -8.615850e-47 |
| Msa0664910 | Msa1298810 | 0.807205 | 5.662388e-50 | -8.615850e-47 |
| Msa0727640 | Msa1298810 | 0.813597 | 2.361795e-51 | -8.615850e-47 |
| Msa0733390 | Msa1298810 | 0.806852 | 6.725533e-50 | -8.615850e-47 |
| Msa0741220 | Msa1298810 | 0.807563 | 4.756033e-50 | -8.615850e-47 |
| Msa0768990 | Msa1298810 | 0.808538 | 2.949256e-50 | -8.615850e-47 |
| Msa0780270 | Msa1298810 | 0.816820 | 4.541498e-52 | -8.615850e-47 |
| Msa0795870 | Msa1298810 | 0.811523 | 6.708791e-51 | -8.615850e-47 |
| Msa0815960 | Msa1298810 | 0.802949 | 4.400829e-49 | -8.615850e-47 |
| Msa0821780 | Msa1298810 | 0.803909 | 2.783335e-49 | -8.615850e-47 |
| Msa0826130 | Msa1298810 | 0.802656 | 5.057412e-49 | -8.615850e-47 |
| Msa0828560 | Msa1298810 | 0.813015 | 3.169956e-51 | -8.615850e-47 |
| Msa0829300 | Msa1298810 | 0.814303 | 1.650128e-51 | -8.615850e-47 |
| Msa0829330 | Msa1298810 | 0.812300 | 4.544766e-51 | -8.615850e-47 |
| Msa0832120 | Msa1298810 | 0.806863 | 6.688834e-50 | -8.615850e-47 |
| Msa0833650 | Msa1298810 | 0.815092 | 1.103667e-51 | -8.615850e-47 |
| Msa0136650 | Msa1298810 | 0.802448 | 5.584625e-49 | -8.615850e-47 |
| Msa0144360 | Msa1298810 | 0.806295 | 8.818011e-50 | -8.615850e-47 |
| Msa0152400 | Msa1298810 | 0.812416 | 4.287609e-51 | -8.615850e-47 |
| Msa0174450 | Msa1298810 | 0.808794 | 2.599994e-50 | -8.615850e-47 |
| Msa0211140 | Msa1298810 | 0.812564 | 3.979468e-51 | -8.615850e-47 |
| Msa0212990 | Msa1298810 | 0.813272 | 2.783820e-51 | -8.615850e-47 |
| Msa0218810 | Msa1298810 | 0.804324 | 2.281071e-49 | -8.615850e-47 |
| Msa0225100 | Msa1298810 | 0.848110 | 7.550234e-60 | -8.615850e-47 |
| Msa0225460 | Msa1298810 | 0.801111 | 1.050544e-48 | -8.615850e-47 |
| Msa0225680 | Msa1298810 | 0.814297 | 1.654917e-51 | -8.615850e-47 |
| Msa0225860 | Msa1298810 | 0.821219 | 4.535142e-53 | -8.615850e-47 |
| Msa1225860 | Msa1298810 | -0.801815 | 7.534586e-49 | -8.615850e-47 |
| Msa1228200 | Msa1298810 | 0.807550 | 4.785548e-50 | -8.615850e-47 |
| Msa1236410 | Msa1298810 | 0.815273 | 1.005873e-51 | -8.615850e-47 |
| Msa1238820 | Msa1298810 | 0.801210 | 1.002709e-48 | -8.615850e-47 |
| Msa1267770 | Msa1298810 | 0.816139 | 6.449389e-52 | -8.615850e-47 |
| Msa1297230 | Msa1298810 | 0.822273 | 2.587452e-53 | -8.615850e-47 |
| Msa1298370 | Msa1298810 | 0.810046 | 1.400509e-50 | -8.615850e-47 |
| Msa1298810 | Msa1328640 | 0.814148 | 1.785530e-51 | -8.615850e-47 |
| Msa1298810 | Msa1328710 | 0.821173 | 4.646977e-53 | -8.615850e-47 |
| Msa1298810 | Msa1330420 | 0.921080 | 5.657035e-88 | -8.615850e-47 |
| Msa1298810 | Msa1343430 | 0.809990 | 1.440061e-50 | -8.615850e-47 |
| Msa1298810 | Msa1348090 | 0.810458 | 1.141000e-50 | -8.615850e-47 |
| Msa1298810 | Msa1355450 | 0.800654 | 1.302546e-48 | -8.615850e-47 |
| Msa1298810 | Msa1356830 | 0.803491 | 3.399314e-49 | -8.615850e-47 |
| Msa1298810 | Msa1366340 | 0.809261 | 2.065058e-50 | -8.615850e-47 |
| Msa1298810 | Msa1385890 | 0.800667 | 1.294144e-48 | -8.615850e-47 |
| Msa1298810 | Msa1402400 | 0.809458 | 1.873820e-50 | -8.615850e-47 |
| Msa1298810 | Msa1419370 | 0.800777 | 1.229033e-48 | -8.615850e-47 |
| Msa1298810 | Msa1425880 | 0.813622 | 2.331832e-51 | -8.615850e-47 |
| Msa1298810 | Msa1427200 | 0.803145 | 4.007716e-49 | -8.615850e-47 |
| Msa1298810 | Msa1432500 | 0.804758 | 1.852422e-49 | -8.615850e-47 |
| Msa1298810 | Msa1440960 | 0.818971 | 1.483389e-52 | -8.615850e-47 |
| Msa0365100 | Msa1298810 | 0.808592 | 2.871780e-50 | -8.615850e-47 |
| Msa0367870 | Msa1298810 | 0.842089 | 3.199210e-58 | -8.615850e-47 |
| Msa0376350 | Msa1298810 | 0.814675 | 1.365613e-51 | -8.615850e-47 |
| Msa0378720 | Msa1298810 | 0.843200 | 1.621352e-58 | -8.615850e-47 |
| Msa0380620 | Msa1298810 | 0.810367 | 1.193882e-50 | -8.615850e-47 |
| Msa0392510 | Msa1298810 | 0.809369 | 1.957864e-50 | -8.615850e-47 |
| Msa0417880 | Msa1298810 | 0.807215 | 5.635526e-50 | -8.615850e-47 |
| Msa0424790 | Msa1298810 | 0.804013 | 2.648385e-49 | -8.615850e-47 |
| Msa0427120 | Msa1298810 | 0.802413 | 5.677517e-49 | -8.615850e-47 |
| Msa0428370 | Msa1298810 | 0.807566 | 4.747394e-50 | -8.615850e-47 |
| Msa0430260 | Msa1298810 | 0.805274 | 1.444506e-49 | -8.615850e-47 |
| Msa0450720 | Msa1298810 | 0.807039 | 6.139251e-50 | -8.615850e-47 |
| Msa0460590 | Msa1298810 | 0.813504 | 2.475087e-51 | -8.615850e-47 |
| Msa0464680 | Msa1298810 | 0.837206 | 5.960367e-57 | -8.615850e-47 |
| Msa0467430 | Msa1298810 | 0.833517 | 5.096140e-56 | -8.615850e-47 |
| Msa0474730 | Msa1298810 | 0.836431 | 9.398311e-57 | -8.615850e-47 |
| Msa1005870 | Msa1298810 | 0.827818 | 1.268225e-54 | -8.615850e-47 |
| Msa1019000 | Msa1298810 | 0.802797 | 4.730679e-49 | -8.615850e-47 |
| Msa1019430 | Msa1298810 | 0.823409 | 1.406670e-53 | -8.615850e-47 |
| Msa1019470 | Msa1298810 | 0.809577 | 1.766860e-50 | -8.615850e-47 |
| Msa1020510 | Msa1298810 | 0.830741 | 2.476312e-55 | -8.615850e-47 |
| Msa1023500 | Msa1298810 | 0.803427 | 3.505044e-49 | -8.615850e-47 |
| Msa1034500 | Msa1298810 | 0.801658 | 8.114748e-49 | -8.615850e-47 |
| Msa1041670 | Msa1298810 | 0.815917 | 7.229795e-52 | -8.615850e-47 |
| Msa1043370 | Msa1298810 | 0.818003 | 2.459007e-52 | -8.615850e-47 |
| Msa1051830 | Msa1298810 | 0.818609 | 1.792351e-52 | -8.615850e-47 |
| Msa1092010 | Msa1298810 | 0.827418 | 1.581924e-54 | -8.615850e-47 |
| Msa1096960 | Msa1298810 | 0.800147 | 1.651505e-48 | -8.615850e-47 |
| Msa0244640 | Msa1298810 | 0.808303 | 3.308582e-50 | -8.615850e-47 |
| Msa0253290 | Msa1298810 | 0.803625 | 3.188371e-49 | -8.615850e-47 |
| Msa0258310 | Msa1298810 | 0.819135 | 1.361573e-52 | -8.615850e-47 |
| Msa0259500 | Msa1298810 | 0.812087 | 5.056249e-51 | -8.615850e-47 |
| Msa0261340 | Msa1298810 | 0.803229 | 3.850844e-49 | -8.615850e-47 |
| Msa0265850 | Msa1298810 | 0.812373 | 4.381441e-51 | -8.615850e-47 |
| Msa0266180 | Msa1298810 | 0.822768 | 1.984923e-53 | -8.615850e-47 |
| Msa0267110 | Msa1298810 | 0.805155 | 1.530268e-49 | -8.615850e-47 |
| Msa0283330 | Msa1298810 | 0.803683 | 3.101255e-49 | -8.615850e-47 |
| Msa0287740 | Msa1298810 | 0.832225 | 1.067339e-55 | -8.615850e-47 |
| Msa0297790 | Msa1298810 | 0.822725 | 2.031899e-53 | -8.615850e-47 |
| Msa0300270 | Msa1298810 | 0.817965 | 2.508434e-52 | -8.615850e-47 |
| Msa0300320 | Msa1298810 | 0.823541 | 1.310378e-53 | -8.615850e-47 |
| Msa0305700 | Msa1298810 | 0.803696 | 3.081964e-49 | -8.615850e-47 |
| Msa0321620 | Msa1298810 | 0.813382 | 2.633346e-51 | -8.615850e-47 |
| Msa0330340 | Msa1298810 | 0.804225 | 2.392567e-49 | -8.615850e-47 |
| Msa0335800 | Msa1298810 | 0.811589 | 6.490527e-51 | -8.615850e-47 |
| Msa0337700 | Msa1298810 | 0.806824 | 6.818890e-50 | -8.615850e-47 |
| Msa0338210 | Msa1298810 | 0.801171 | 1.021081e-48 | -8.615850e-47 |
| Msa0341540 | Msa1298810 | 0.800899 | 1.160492e-48 | -8.615850e-47 |
| Msa0363200 | Msa1298810 | 0.832894 | 7.283781e-56 | -8.615850e-47 |
| Msa1132840 | Msa1298810 | 0.819674 | 1.025849e-52 | -8.615850e-47 |
| Msa1140210 | Msa1298810 | 0.816561 | 5.191183e-52 | -8.615850e-47 |
| Msa1145810 | Msa1298810 | 0.807045 | 6.121410e-50 | -8.615850e-47 |
| Msa1155170 | Msa1298810 | -0.813654 | 2.294734e-51 | -8.615850e-47 |
| Msa1166560 | Msa1298810 | 0.814444 | 1.536227e-51 | -8.615850e-47 |
| Msa1192090 | Msa1298810 | 0.820024 | 8.531972e-53 | -8.615850e-47 |
| Msa1193170 | Msa1298810 | 0.814458 | 1.525351e-51 | -8.615850e-47 |
| Msa1196440 | Msa1298810 | 0.809244 | 2.082548e-50 | -8.615850e-47 |
| Msa1198250 | Msa1298810 | 0.809703 | 1.659380e-50 | -8.615850e-47 |
| Msa1199570 | Msa1298810 | 0.824373 | 8.360840e-54 | -8.615850e-47 |
| Msa1208160 | Msa1298810 | 0.826635 | 2.435240e-54 | -8.615850e-47 |
| Msa1209450 | Msa1298810 | 0.942692 | 4.581746e-102 | -8.615850e-47 |
| Msa0498060 | Msa1298810 | 0.811635 | 6.344855e-51 | -8.615850e-47 |
| Msa0516170 | Msa1298810 | 0.803616 | 3.201896e-49 | -8.615850e-47 |
| Msa0580370 | Msa1298810 | 0.816323 | 5.866227e-52 | -8.615850e-47 |
| Msa0581470 | Msa1298810 | 0.801486 | 8.802504e-49 | -8.615850e-47 |
| Msa0600930 | Msa1298810 | 0.804381 | 2.220058e-49 | -8.615850e-47 |
| Msa0601950 | Msa1298810 | 0.812180 | 4.827551e-51 | -8.615850e-47 |
| Msa0861510 | Msa1298810 | 0.827546 | 1.473798e-54 | -8.615850e-47 |
| Msa0861530 | Msa1298810 | 0.817265 | 3.606924e-52 | -8.615850e-47 |
| Msa0861600 | Msa1298810 | 0.828191 | 1.031154e-54 | -8.615850e-47 |
| Msa0875290 | Msa1298810 | 0.812993 | 3.204988e-51 | -8.615850e-47 |
| Msa0936220 | Msa1298810 | 0.801423 | 9.067260e-49 | -8.615850e-47 |
| Msa0945110 | Msa1298810 | 0.802061 | 6.708099e-49 | -8.615850e-47 |
| Msa0967380 | Msa1298810 | 0.829810 | 4.180002e-55 | -8.615850e-47 |
| Msa0967870 | Msa1298810 | 0.829695 | 4.458421e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298810 | MtrunA17_Chr4g0058731 | 97.708 | 349 | 8 | 0 | 1 | 349 | 1 | 349 | 0.0 | 698 |
| Msa1298810 | MtrunA17_Chr8g0388831 | 54.114 | 316 | 141 | 2 | 12 | 325 | 1 | 314 | 9.44e-121 | 352 |
| Msa1298810 | MtrunA17_Chr3g0117251 | 83.333 | 174 | 29 | 0 | 166 | 339 | 1 | 174 | 5.68e-106 | 308 |
| Msa1298810 | MtrunA17_Chr7g0262941 | 48.916 | 323 | 160 | 3 | 12 | 333 | 1 | 319 | 6.15e-102 | 303 |
| Msa1298810 | MtrunA17_Chr1g0182541 | 48.137 | 322 | 163 | 2 | 12 | 333 | 1 | 318 | 2.24e-101 | 301 |
| Msa1298810 | MtrunA17_Chr3g0117241 | 84.211 | 152 | 24 | 0 | 12 | 163 | 1 | 152 | 8.87e-91 | 268 |
| Msa1298810 | MtrunA17_Chr6g0470321 | 47.742 | 310 | 157 | 2 | 25 | 332 | 17 | 323 | 9.89e-90 | 272 |
| Msa1298810 | MtrunA17_Chr8g0386971 | 45.130 | 308 | 165 | 2 | 18 | 325 | 2 | 305 | 1.11e-89 | 271 |
| Msa1298810 | MtrunA17_Chr1g0202931 | 46.795 | 312 | 162 | 2 | 24 | 335 | 8 | 315 | 1.44e-89 | 271 |
| Msa1298810 | MtrunA17_Chr6g0470501 | 47.525 | 303 | 154 | 3 | 26 | 326 | 37 | 336 | 7.05e-87 | 265 |
| Msa1298810 | MtrunA17_Chr1g0202861 | 43.910 | 312 | 171 | 2 | 24 | 335 | 49 | 356 | 2.33e-83 | 257 |
| Msa1298810 | MtrunA17_Chr1g0202891 | 44.231 | 312 | 170 | 2 | 24 | 335 | 8 | 315 | 4.69e-83 | 254 |
| Msa1298810 | MtrunA17_Chr1g0202871 | 43.269 | 312 | 173 | 2 | 24 | 335 | 8 | 315 | 1.24e-81 | 251 |
| Msa1298810 | MtrunA17_Chr6g0466681 | 29.730 | 259 | 167 | 6 | 52 | 309 | 70 | 314 | 5.54e-26 | 106 |
| Msa1298810 | MtrunA17_Chr6g0469251 | 29.592 | 294 | 184 | 8 | 56 | 332 | 14 | 301 | 8.37e-25 | 102 |
| Msa1298810 | MtrunA17_Chr6g0481311 | 28.797 | 316 | 185 | 10 | 40 | 328 | 51 | 353 | 3.43e-23 | 99.4 |
| Msa1298810 | MtrunA17_Chr2g0317921 | 28.076 | 317 | 186 | 12 | 50 | 332 | 88 | 396 | 2.86e-21 | 94.0 |
| Msa1298810 | MtrunA17_Chr3g0079561 | 28.958 | 259 | 161 | 8 | 91 | 332 | 5 | 257 | 9.79e-20 | 87.8 |
| Msa1298810 | MtrunA17_Chr3g0131521 | 28.912 | 294 | 151 | 11 | 51 | 308 | 37 | 308 | 4.87e-17 | 80.9 |
| Msa1298810 | MtrunA17_Chr1g0171831 | 31.651 | 218 | 113 | 7 | 52 | 256 | 20 | 214 | 6.92e-16 | 76.6 |
| Msa1298810 | MtrunA17_Chr4g0028921 | 27.969 | 261 | 158 | 8 | 52 | 303 | 17 | 256 | 1.06e-15 | 76.3 |
| Msa1298810 | MtrunA17_Chr3g0126521 | 27.461 | 193 | 127 | 4 | 149 | 332 | 69 | 257 | 8.88e-14 | 70.5 |
| Msa1298810 | MtrunA17_Chr5g0425391 | 24.920 | 313 | 163 | 11 | 47 | 310 | 5 | 294 | 1.31e-13 | 70.5 |
| Msa1298810 | MtrunA17_Chr8g0349671 | 25.321 | 312 | 153 | 11 | 51 | 308 | 9 | 294 | 1.70e-12 | 67.4 |
| Msa1298810 | MtrunA17_Chr7g0247011 | 26.117 | 291 | 156 | 10 | 51 | 303 | 9 | 278 | 1.08e-11 | 64.7 |
| Msa1298810 | MtrunA17_Chr8g0381191 | 34.965 | 143 | 84 | 3 | 51 | 189 | 50 | 187 | 1.39e-11 | 64.7 |
| Msa1298810 | MtrunA17_Chr4g0025981 | 27.686 | 242 | 145 | 6 | 41 | 278 | 36 | 251 | 2.18e-11 | 64.3 |
| Msa1298810 | MtrunA17_Chr7g0267881 | 31.973 | 147 | 84 | 5 | 51 | 191 | 11 | 147 | 6.31e-11 | 62.0 |
| Msa1298810 | MtrunA17_Chr1g0202911 | 41.429 | 70 | 41 | 0 | 52 | 121 | 4 | 73 | 8.18e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298810 | AT5G50130.1 | 72.700 | 337 | 90 | 2 | 12 | 347 | 1 | 336 | 3.11e-176 | 493 |
| Msa1298810 | AT5G50130.8 | 71.622 | 296 | 84 | 0 | 52 | 347 | 7 | 302 | 8.31e-154 | 434 |
| Msa1298810 | AT5G50130.7 | 71.380 | 297 | 84 | 1 | 52 | 347 | 7 | 303 | 2.76e-152 | 431 |
| Msa1298810 | AT5G50130.2 | 76.619 | 278 | 63 | 2 | 12 | 288 | 1 | 277 | 1.67e-151 | 429 |
| Msa1298810 | AT5G50130.4 | 76.344 | 279 | 63 | 3 | 12 | 288 | 1 | 278 | 4.90e-150 | 426 |
| Msa1298810 | AT5G50130.9 | 76.265 | 257 | 60 | 1 | 12 | 268 | 1 | 256 | 1.91e-140 | 399 |
| Msa1298810 | AT5G50130.3 | 75.969 | 258 | 60 | 2 | 12 | 268 | 1 | 257 | 4.98e-139 | 395 |
| Msa1298810 | AT5G50130.6 | 75.630 | 238 | 57 | 1 | 52 | 288 | 7 | 244 | 6.16e-128 | 369 |
| Msa1298810 | AT5G50130.5 | 75.314 | 239 | 57 | 2 | 52 | 288 | 7 | 245 | 1.56e-126 | 365 |
| Msa1298810 | AT4G24050.1 | 54.747 | 316 | 138 | 2 | 12 | 325 | 1 | 313 | 2.72e-121 | 353 |
| Msa1298810 | AT1G64590.1 | 53.293 | 334 | 141 | 3 | 12 | 333 | 1 | 331 | 1.47e-105 | 313 |
| Msa1298810 | AT4G24050.2 | 53.763 | 279 | 122 | 3 | 12 | 288 | 1 | 274 | 3.26e-101 | 300 |
| Msa1298810 | AT5G02540.1 | 48.632 | 329 | 165 | 2 | 14 | 342 | 2 | 326 | 1.10e-93 | 283 |
| Msa1298810 | AT2G37540.1 | 47.604 | 313 | 160 | 2 | 14 | 326 | 2 | 310 | 1.14e-93 | 282 |
| Msa1298810 | AT4G23420.1 | 43.631 | 314 | 174 | 1 | 18 | 331 | 2 | 312 | 8.10e-87 | 265 |
| Msa1298810 | AT4G23420.2 | 43.631 | 314 | 174 | 1 | 18 | 331 | 2 | 312 | 8.10e-87 | 265 |
| Msa1298810 | AT4G23430.2 | 42.857 | 329 | 180 | 2 | 18 | 346 | 2 | 322 | 3.09e-86 | 263 |
| Msa1298810 | AT4G23420.3 | 44.118 | 306 | 168 | 1 | 26 | 331 | 27 | 329 | 1.94e-85 | 262 |
| Msa1298810 | AT4G11410.1 | 45.695 | 302 | 160 | 2 | 24 | 325 | 8 | 305 | 4.77e-85 | 260 |
| Msa1298810 | AT4G23430.1 | 43.161 | 329 | 177 | 4 | 18 | 346 | 2 | 320 | 4.73e-84 | 258 |
| Msa1298810 | AT4G23430.4 | 40.122 | 329 | 179 | 3 | 18 | 346 | 2 | 312 | 1.83e-75 | 235 |
| Msa1298810 | AT2G37540.2 | 48.980 | 245 | 122 | 1 | 14 | 258 | 2 | 243 | 1.06e-74 | 232 |
| Msa1298810 | AT4G23430.3 | 40.426 | 329 | 176 | 5 | 18 | 346 | 2 | 310 | 2.51e-73 | 230 |
| Msa1298810 | AT4G11410.2 | 46.341 | 246 | 129 | 1 | 24 | 269 | 8 | 250 | 3.86e-69 | 218 |
| Msa1298810 | AT4G23420.5 | 43.182 | 264 | 147 | 1 | 18 | 281 | 2 | 262 | 8.03e-69 | 217 |
| Msa1298810 | AT4G23420.4 | 46.444 | 239 | 125 | 1 | 18 | 256 | 2 | 237 | 1.23e-67 | 214 |
| Msa1298810 | AT4G09750.1 | 29.021 | 286 | 183 | 6 | 31 | 309 | 19 | 291 | 1.96e-28 | 113 |
| Msa1298810 | AT4G27760.1 | 31.847 | 314 | 180 | 10 | 42 | 332 | 49 | 351 | 2.53e-25 | 105 |
| Msa1298810 | AT5G15940.1 | 30.132 | 302 | 182 | 10 | 52 | 333 | 63 | 355 | 1.50e-24 | 103 |
| Msa1298810 | AT5G15940.3 | 30.132 | 302 | 182 | 10 | 52 | 333 | 64 | 356 | 1.61e-24 | 103 |
| Msa1298810 | AT5G15940.2 | 30.132 | 302 | 182 | 10 | 52 | 333 | 64 | 356 | 1.61e-24 | 103 |
| Msa1298810 | AT5G53090.1 | 30.990 | 313 | 182 | 10 | 43 | 332 | 49 | 350 | 6.27e-24 | 101 |
| Msa1298810 | AT5G04070.1 | 29.967 | 307 | 183 | 11 | 52 | 338 | 62 | 356 | 8.59e-24 | 100 |
| Msa1298810 | AT1G03630.2 | 29.430 | 316 | 182 | 12 | 50 | 332 | 89 | 396 | 1.14e-23 | 101 |
| Msa1298810 | AT1G03630.1 | 29.430 | 316 | 182 | 12 | 50 | 332 | 91 | 398 | 1.43e-23 | 100 |
| Msa1298810 | AT5G54190.1 | 26.518 | 313 | 192 | 11 | 52 | 332 | 96 | 402 | 3.90e-23 | 99.8 |
| Msa1298810 | AT5G15940.4 | 31.274 | 259 | 153 | 8 | 52 | 292 | 64 | 315 | 7.59e-22 | 95.1 |
| Msa1298810 | AT4G27440.2 | 28.115 | 313 | 187 | 11 | 52 | 332 | 92 | 398 | 9.29e-22 | 95.9 |
| Msa1298810 | AT4G27440.1 | 28.115 | 313 | 187 | 11 | 52 | 332 | 92 | 398 | 9.29e-22 | 95.9 |
| Msa1298810 | AT5G53100.1 | 29.450 | 309 | 185 | 9 | 47 | 332 | 43 | 341 | 1.20e-21 | 95.1 |
| Msa1298810 | AT3G46170.1 | 26.829 | 287 | 173 | 10 | 28 | 303 | 11 | 271 | 1.27e-16 | 79.7 |
| Msa1298810 | AT1G63380.2 | 28.571 | 238 | 139 | 8 | 29 | 259 | 8 | 221 | 4.49e-15 | 75.1 |
| Msa1298810 | AT5G61830.1 | 25.510 | 294 | 164 | 8 | 51 | 308 | 39 | 313 | 4.65e-15 | 75.5 |
| Msa1298810 | AT5G61830.2 | 25.510 | 294 | 164 | 8 | 51 | 308 | 39 | 313 | 4.65e-15 | 75.5 |
| Msa1298810 | AT3G55290.1 | 28.897 | 263 | 153 | 10 | 52 | 303 | 24 | 263 | 6.87e-15 | 74.3 |
| Msa1298810 | AT3G55290.2 | 28.897 | 263 | 153 | 10 | 52 | 303 | 23 | 262 | 7.26e-15 | 74.3 |
| Msa1298810 | AT1G63380.4 | 26.241 | 282 | 168 | 10 | 35 | 303 | 11 | 265 | 1.54e-14 | 73.6 |
| Msa1298810 | AT1G63380.3 | 26.241 | 282 | 168 | 10 | 35 | 303 | 7 | 261 | 1.85e-14 | 73.2 |
| Msa1298810 | AT1G63380.1 | 26.241 | 282 | 168 | 10 | 35 | 303 | 9 | 263 | 1.97e-14 | 73.2 |
| Msa1298810 | AT3G55310.1 | 28.674 | 279 | 164 | 10 | 35 | 303 | 9 | 262 | 2.06e-14 | 73.2 |
| Msa1298810 | AT1G62610.3 | 26.596 | 282 | 167 | 11 | 35 | 303 | 7 | 261 | 5.90e-14 | 71.6 |
| Msa1298810 | AT1G62610.2 | 26.596 | 282 | 167 | 11 | 35 | 303 | 5 | 259 | 6.40e-14 | 71.6 |
| Msa1298810 | AT1G62610.4 | 26.596 | 282 | 167 | 11 | 35 | 303 | 11 | 265 | 6.98e-14 | 71.6 |
| Msa1298810 | AT1G62610.1 | 26.596 | 282 | 167 | 11 | 35 | 303 | 6 | 260 | 7.26e-14 | 71.6 |
| Msa1298810 | AT3G03980.1 | 29.114 | 237 | 125 | 9 | 37 | 254 | 1 | 213 | 1.30e-12 | 67.8 |
Find 66 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAATTTCTTTCATTTAA+TGG | 0.081513 | 8_3:-59648585 | Msa1298810:three_prime_UTR |
| ATTGCAGGGCCTAGTGGTTT+TGG | 0.230469 | 8_3:-59651888 | Msa1298810:CDS |
| ACACTTACATGAGAATATTA+AGG | 0.272671 | 8_3:+59651365 | None:intergenic |
| GAAGGGAACAATAAGGTATT+TGG | 0.288975 | 8_3:-59651916 | Msa1298810:CDS |
| TGGTTGGCAACAAAAGAAAA+AGG | 0.290146 | 8_3:-59651950 | Msa1298810:CDS |
| TCAATTGAAGGTGCTACTTC+TGG | 0.308401 | 8_3:-59651592 | Msa1298810:intron |
| AGGTATTTGGCAGGCATTGC+AGG | 0.316972 | 8_3:-59651903 | Msa1298810:CDS |
| TAAGAGTATAAATTATAAAA+TGG | 0.325585 | 8_3:-59648524 | Msa1298810:three_prime_UTR |
| CCATTAAATGAAAGAAATTA+AGG | 0.337870 | 8_3:+59648585 | None:intergenic |
| TTATGCTGAGGTTATTCTAT+TGG | 0.355615 | 8_3:-59651455 | Msa1298810:CDS |
| ATGAGAGCTGTTAGGTTTGA+AGG | 0.360069 | 8_3:+59651816 | None:intergenic |
| GAAGGTGCTACTTCTGGTAT+TGG | 0.364873 | 8_3:-59651586 | Msa1298810:intron |
| AGGAATTATTAGAGCACATA+AGG | 0.377554 | 8_3:-59649192 | Msa1298810:CDS |
| TGGTGCCAGGGACATGAAAA+AGG | 0.383783 | 8_3:-59651515 | Msa1298810:CDS |
| TTTCTTCAGTAATTCATAGC+TGG | 0.397861 | 8_3:-59649640 | Msa1298810:CDS |
| CGACTTAGACAAGCAGCAAT+TGG | 0.406522 | 8_3:-59648736 | Msa1298810:CDS |
| GCAAATAAAACAGGCATTCA+AGG | 0.411603 | 8_3:-59649677 | Msa1298810:CDS |
| TGAGAGTTGTGGTTGGTGCC+AGG | 0.429651 | 8_3:-59651528 | Msa1298810:CDS |
| TTCTTCAGTAATTCATAGCT+GGG | 0.432368 | 8_3:-59649639 | Msa1298810:CDS |
| CAGCATAAGGACTCTCCTCT+TGG | 0.434439 | 8_3:+59651470 | None:intergenic |
| ATTCCTGTCTTCACAATGCC+TGG | 0.434455 | 8_3:+59649209 | None:intergenic |
| CATCGATGAAGGGAACAATA+AGG | 0.437595 | 8_3:-59651923 | Msa1298810:CDS |
| TTCCTTCACATGCAGAATCA+TGG | 0.450116 | 8_3:+59649424 | None:intergenic |
| AGCACATAAGGGCTTAATAA+CGG | 0.451942 | 8_3:-59649180 | Msa1298810:CDS |
| ATAGATACTGCAAATAAAAC+AGG | 0.452810 | 8_3:-59649686 | Msa1298810:CDS |
| ACATTTGCTACAAATTACTT+AGG | 0.455021 | 8_3:-59650988 | Msa1298810:intron |
| TTAAAACTACATTATAATCA+AGG | 0.455328 | 8_3:-59648633 | Msa1298810:three_prime_UTR |
| GCACATAAGGGCTTAATAAC+GGG | 0.456442 | 8_3:-59649179 | Msa1298810:intron |
| CCTTCCTCTCTCATCTCCTC+TGG | 0.460848 | 8_3:-59648386 | Msa1298810:three_prime_UTR |
| CACTTACATGAGAATATTAA+GGG | 0.464360 | 8_3:+59651366 | None:intergenic |
| AATAGAATAACCTCAGCATA+AGG | 0.472498 | 8_3:+59651457 | None:intergenic |
| GAATTTCCCACTCACCCCTT+CGG | 0.485875 | 8_3:+59648855 | None:intergenic |
| TACCAGTGATGAGAGCTGTT+AGG | 0.489625 | 8_3:+59651808 | None:intergenic |
| TGCTTTAAAGACATGCTCAC+TGG | 0.492898 | 8_3:-59649599 | Msa1298810:CDS |
| GGAAATGGCTAGACAACTAA+AGG | 0.519535 | 8_3:-59649405 | Msa1298810:intron |
| TGAGAGCTGTTAGGTTTGAA+GGG | 0.521862 | 8_3:+59651817 | None:intergenic |
| CCAGAGGAGATGAGAGAGGA+AGG | 0.522918 | 8_3:+59648386 | None:intergenic |
| TAAAACTACATTATAATCAA+GGG | 0.529101 | 8_3:-59648632 | Msa1298810:three_prime_UTR |
| AGATACATGGTCTAGAATAG+AGG | 0.530017 | 8_3:+59648701 | None:intergenic |
| GATTCTGCATGTGAAGGAAA+TGG | 0.534551 | 8_3:-59649420 | Msa1298810:CDS |
| GGAATTATTAGAGCACATAA+GGG | 0.541916 | 8_3:-59649191 | Msa1298810:CDS |
| AACCTAACAGCTCTCATCAC+TGG | 0.543509 | 8_3:-59651810 | Msa1298810:intron |
| ACTATCAATGCAGTGCATCC+AGG | 0.545366 | 8_3:-59649227 | Msa1298810:CDS |
| ACATTATAATCAAGGGGAAG+AGG | 0.546363 | 8_3:-59648625 | Msa1298810:three_prime_UTR |
| CATCCAGGCATTGTGAAGAC+AGG | 0.549477 | 8_3:-59649212 | Msa1298810:CDS |
| GAGAGTTGTGGTTGGTGCCA+GGG | 0.563988 | 8_3:-59651527 | Msa1298810:CDS |
| GAATTTGAGCCAAAACCACT+AGG | 0.566141 | 8_3:+59651879 | None:intergenic |
| GCAGGCATTGCAGGGCCTAG+TGG | 0.577354 | 8_3:-59651894 | Msa1298810:CDS |
| GATACATGGTCTAGAATAGA+GGG | 0.578220 | 8_3:+59648702 | None:intergenic |
| GGTATTTGGCAGGCATTGCA+GGG | 0.578276 | 8_3:-59651902 | Msa1298810:CDS |
| GAGCTGTTAGGTTTGAAGGG+AGG | 0.584163 | 8_3:+59651820 | None:intergenic |
| AGCCATGATTCTGCATGTGA+AGG | 0.585391 | 8_3:-59649426 | Msa1298810:CDS |
| GGAACAATAAGGTATTTGGC+AGG | 0.598423 | 8_3:-59651912 | Msa1298810:CDS |
| TATACACACACATGCATGCA+CGG | 0.603638 | 8_3:+59648673 | None:intergenic |
| AAAAGGGAATCATCGATGAA+GGG | 0.604378 | 8_3:-59651933 | Msa1298810:CDS |
| AGTTGGAGGACACGAATGGT+TGG | 0.604406 | 8_3:-59651966 | None:intergenic |
| GCTGCTCAAAACGATATCAC+AGG | 0.618153 | 8_3:-59649030 | Msa1298810:intron |
| ATCATGTTTCTTAATTAACA+CGG | 0.623869 | 8_3:-59648362 | Msa1298810:three_prime_UTR |
| AGGAGTGTACTCTCATAACC+TGG | 0.628213 | 8_3:-59651037 | Msa1298810:CDS |
| AAAACTACATTATAATCAAG+GGG | 0.628743 | 8_3:-59648631 | Msa1298810:three_prime_UTR |
| ATGCACGGTGTCTAGATACA+TGG | 0.629660 | 8_3:+59648688 | None:intergenic |
| AGAGGAGTGAGAGTTGTGGT+TGG | 0.631623 | 8_3:-59651535 | Msa1298810:CDS |
| GATACCAGAGGAGATGAGAG+AGG | 0.671712 | 8_3:+59648382 | None:intergenic |
| ATTAAGAAACATGATACCAG+AGG | 0.676241 | 8_3:+59648370 | None:intergenic |
| AGAGGAGAGTCCTTATGCTG+AGG | 0.678257 | 8_3:-59651467 | Msa1298810:CDS |
| ACTTACATGAGAATATTAAG+GGG | 0.701725 | 8_3:+59651367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAAAACTAAAGTAA+TGG | - | chr8_3:59649624-59649643 | Msa1298810:CDS | 10.0% |
| !! | ATTAATCATGTTAAAAAATA+TGG | - | chr8_3:59650219-59650238 | Msa1298810:intron | 10.0% |
| !!! | TGCATTAATTAATTAAATTT+TGG | - | chr8_3:59650790-59650809 | Msa1298810:intron | 10.0% |
| !!! | ACTAATATTTTTTTGAATAT+TGG | - | chr8_3:59651027-59651046 | Msa1298810:CDS | 10.0% |
| !!! | CTAATATTTTTTTGAATATT+GGG | - | chr8_3:59651028-59651047 | Msa1298810:CDS | 10.0% |
| !!! | ATGAAATTTTTGAAAATATA+TGG | + | chr8_3:59651229-59651248 | None:intergenic | 10.0% |
| !!! | TAAGAGTATAAATTATAAAA+TGG | - | chr8_3:59651784-59651803 | Msa1298810:intron | 10.0% |
| !!! | AATGAATATATGTTTTGTTT+TGG | - | chr8_3:59648688-59648707 | Msa1298810:exon | 15.0% |
| !! | TTAATGTATTATTCATACAT+AGG | + | chr8_3:59649546-59649565 | None:intergenic | 15.0% |
| !!! | CAAAAAGTTTTTTTTTGTTA+TGG | + | chr8_3:59649835-59649854 | None:intergenic | 15.0% |
| !!! | TTTTTGTAATAAGAAACTTA+AGG | - | chr8_3:59649849-59649868 | Msa1298810:intron | 15.0% |
| !! | ATTTAAACTCCATAATAAAA+AGG | - | chr8_3:59650058-59650077 | Msa1298810:intron | 15.0% |
| !!! | ATTTTTTAACATGATTAATC+AGG | + | chr8_3:59650218-59650237 | None:intergenic | 15.0% |
| !! | AACAATACGAAATTATTTAA+AGG | + | chr8_3:59651173-59651192 | None:intergenic | 15.0% |
| !!! | TTGTTTCAAACAATTTTATA+TGG | - | chr8_3:59651188-59651207 | Msa1298810:intron | 15.0% |
| !! | TTAAAACTACATTATAATCA+AGG | - | chr8_3:59651675-59651694 | Msa1298810:intron | 15.0% |
| !! | TAAAACTACATTATAATCAA+GGG | - | chr8_3:59651676-59651695 | Msa1298810:intron | 15.0% |
| !! | ATACAATATAATCACAATTG+AGG | + | chr8_3:59649111-59649130 | None:intergenic | 20.0% |
| !! | ATTGTGATTATATTGTATTG+TGG | - | chr8_3:59649113-59649132 | Msa1298810:intron | 20.0% |
| !! | AATGAAGCATAGTAAAAATT+AGG | - | chr8_3:59649499-59649518 | Msa1298810:intron | 20.0% |
| !!! | GTGACTTTTTTTTTTTTATG+TGG | + | chr8_3:59649965-59649984 | None:intergenic | 20.0% |
| !!! | TTTTTCGTCCATTTAAATTT+TGG | + | chr8_3:59650107-59650126 | None:intergenic | 20.0% |
| !! | TTTAAATGGACGAAAAAAAT+TGG | - | chr8_3:59650110-59650129 | Msa1298810:intron | 20.0% |
| !!! | AACATTTTTGAAAGCTAATT+TGG | - | chr8_3:59650405-59650424 | Msa1298810:intron | 20.0% |
| !!! | AATTTGTTTGAATTAGAAGA+AGG | - | chr8_3:59650467-59650486 | Msa1298810:intron | 20.0% |
| !! | TAACAAAAATGTAGTTACAA+TGG | - | chr8_3:59650832-59650851 | Msa1298810:intron | 20.0% |
| !! | AACAAAAATGTAGTTACAAT+GGG | - | chr8_3:59650833-59650852 | Msa1298810:intron | 20.0% |
| !! | TGTCATATCATATATGATTA+AGG | - | chr8_3:59650973-59650992 | Msa1298810:intron | 20.0% |
| !! | GTCATATCATATATGATTAA+GGG | - | chr8_3:59650974-59650993 | Msa1298810:intron | 20.0% |
| !! | GAATATTGGGAAATAATTAT+AGG | - | chr8_3:59651041-59651060 | Msa1298810:CDS | 20.0% |
| !! | TTGAAAATATATGGCTTAAT+TGG | + | chr8_3:59651220-59651239 | None:intergenic | 20.0% |
| !! | AAAACTACATTATAATCAAG+GGG | - | chr8_3:59651677-59651696 | Msa1298810:intron | 20.0% |
| !! | CCATTAAATGAAAGAAATTA+AGG | + | chr8_3:59651726-59651745 | None:intergenic | 20.0% |
| !! | CCTTAATTTCTTTCATTTAA+TGG | - | chr8_3:59651723-59651742 | Msa1298810:intron | 20.0% |
| !! | ACTCATTTAGTTAGTATATA+AGG | - | chr8_3:59651831-59651850 | Msa1298810:CDS | 20.0% |
| !! | ATCATGTTTCTTAATTAACA+CGG | - | chr8_3:59651946-59651965 | Msa1298810:CDS | 20.0% |
| ! | TGCAAGTATATACATAATAC+TGG | + | chr8_3:59648636-59648655 | None:intergenic | 25.0% |
| !!! | GTTTTGGAATTTTCAATTGA+AGG | - | chr8_3:59648704-59648723 | Msa1298810:CDS | 25.0% |
| !! | CAAATCTAAAGCTAAAAACT+CGG | + | chr8_3:59648921-59648940 | None:intergenic | 25.0% |
| ! | ACTTACATGAGAATATTAAG+GGG | + | chr8_3:59648944-59648963 | None:intergenic | 25.0% |
| ! | CACTTACATGAGAATATTAA+GGG | + | chr8_3:59648945-59648964 | None:intergenic | 25.0% |
| ! | ACACTTACATGAGAATATTA+AGG | + | chr8_3:59648946-59648965 | None:intergenic | 25.0% |
| ! | AAGCATAAGAAATGACAATA+AGG | + | chr8_3:59648988-59649007 | None:intergenic | 25.0% |
| !! | TGTCAATTCAATTTTCTCTT+CGG | + | chr8_3:59649303-59649322 | None:intergenic | 25.0% |
| !! | ACATTTGCTACAAATTACTT+AGG | - | chr8_3:59649320-59649339 | Msa1298810:intron | 25.0% |
| !! | TTTTTACTATGCTTCATTCA+TGG | + | chr8_3:59649497-59649516 | None:intergenic | 25.0% |
| ! | TTTATGTATATCGGACTAAA+CGG | + | chr8_3:59649700-59649719 | None:intergenic | 25.0% |
| ! | AAACTTTAGCAGTCTAATTA+TGG | - | chr8_3:59650001-59650020 | Msa1298810:intron | 25.0% |
| ! | CCATAATAAAAAGGTCTAAA+CGG | - | chr8_3:59650067-59650086 | Msa1298810:intron | 25.0% |
| ! | TAGCTTTCAAAAATGTTTCA+TGG | + | chr8_3:59650402-59650421 | None:intergenic | 25.0% |
| ! | TTTGTTAACAAAAATGCTAC+TGG | - | chr8_3:59650591-59650610 | Msa1298810:intron | 25.0% |
| ! | ATAGATACTGCAAATAAAAC+AGG | - | chr8_3:59650622-59650641 | Msa1298810:intron | 25.0% |
| !! | TTCTTAATTTTGCAGAGAAA+AGG | + | chr8_3:59650760-59650779 | None:intergenic | 25.0% |
| ! | AAATATTAAGGCAATTTGAG+AGG | + | chr8_3:59650946-59650965 | None:intergenic | 25.0% |
| ! | TGACAAGAGCAAAAATATTA+AGG | + | chr8_3:59650958-59650977 | None:intergenic | 25.0% |
| ! | CTTTGATGCAATAAAAAACA+AGG | + | chr8_3:59651259-59651278 | None:intergenic | 25.0% |
| ! | TAGTTAGTATATAAGGTAGA+AGG | - | chr8_3:59651838-59651857 | Msa1298810:CDS | 25.0% |
| AGTGAAAGAAAAAATCCAAG+AGG | - | chr8_3:59648823-59648842 | Msa1298810:CDS | 30.0% | |
| AATAGAATAACCTCAGCATA+AGG | + | chr8_3:59648854-59648873 | None:intergenic | 30.0% | |
| TTATGCTGAGGTTATTCTAT+TGG | - | chr8_3:59648853-59648872 | Msa1298810:CDS | 30.0% | |
| TTGATTCATCAGTTGAGAAA+AGG | - | chr8_3:59649008-59649027 | Msa1298810:intron | 30.0% | |
| TGATTCATCAGTTGAGAAAA+GGG | - | chr8_3:59649009-59649028 | Msa1298810:intron | 30.0% | |
| ! | TCTGACTACAATTTAAAACC+CGG | + | chr8_3:59649039-59649058 | None:intergenic | 30.0% |
| TTAGCACAACATGAATTAAC+AGG | + | chr8_3:59649209-59649228 | None:intergenic | 30.0% | |
| ! | TTTTCATTCCTACATATGAG+AGG | - | chr8_3:59649349-59649368 | Msa1298810:intron | 30.0% |
| GTTAAGAGCTACAAACTAAA+GGG | + | chr8_3:59649427-59649446 | None:intergenic | 30.0% | |
| TGTTAAGAGCTACAAACTAA+AGG | + | chr8_3:59649428-59649447 | None:intergenic | 30.0% | |
| AATGTACCTACCTAATTAGA+AGG | + | chr8_3:59649597-59649616 | None:intergenic | 30.0% | |
| AAAACTAAAGTAATGGTGCA+TGG | - | chr8_3:59649631-59649650 | Msa1298810:CDS | 30.0% | |
| TTATGTATATCGGACTAAAC+GGG | + | chr8_3:59649699-59649718 | None:intergenic | 30.0% | |
| GATCCGTTCGTAAAATATAA+CGG | - | chr8_3:59649744-59649763 | Msa1298810:intron | 30.0% | |
| ATCCGTTCGTAAAATATAAC+GGG | - | chr8_3:59649745-59649764 | Msa1298810:intron | 30.0% | |
| ! | AACCCGTTATATTTTACGAA+CGG | + | chr8_3:59649750-59649769 | None:intergenic | 30.0% |
| !! | TTCGTAAAATATAACGGGTT+GGG | - | chr8_3:59649750-59649769 | Msa1298810:intron | 30.0% |
| ! | CCGTTTAGACCTTTTTATTA+TGG | + | chr8_3:59650070-59650089 | None:intergenic | 30.0% |
| TTCTTGTGTTCTTAAATTGC+AGG | - | chr8_3:59650562-59650581 | Msa1298810:intron | 30.0% | |
| TTTCTTCAGTAATTCATAGC+TGG | - | chr8_3:59650668-59650687 | Msa1298810:intron | 30.0% | |
| TTCTTCAGTAATTCATAGCT+GGG | - | chr8_3:59650669-59650688 | Msa1298810:intron | 30.0% | |
| TTGGGAAATAATTATAGGCA+AGG | - | chr8_3:59651046-59651065 | Msa1298810:CDS | 30.0% | |
| AGGAATTATTAGAGCACATA+AGG | - | chr8_3:59651116-59651135 | Msa1298810:intron | 30.0% | |
| GGAATTATTAGAGCACATAA+GGG | - | chr8_3:59651117-59651136 | Msa1298810:intron | 30.0% | |
| TTTCTTACTACATCCTTAGT+TGG | - | chr8_3:59651329-59651348 | Msa1298810:intron | 30.0% | |
| ATCATTAATCTCTCCAACTA+AGG | + | chr8_3:59651345-59651364 | None:intergenic | 30.0% | |
| AATATGTATTTGCACTTTGC+AGG | - | chr8_3:59651391-59651410 | Msa1298810:CDS | 30.0% | |
| ATATGTATTTGCACTTTGCA+GGG | - | chr8_3:59651392-59651411 | Msa1298810:CDS | 30.0% | |
| ! | TGTATTGTTCCATAGCTTTT+TGG | + | chr8_3:59651534-59651553 | None:intergenic | 30.0% |
| ATTAAGAAACATGATACCAG+AGG | + | chr8_3:59651941-59651960 | None:intergenic | 30.0% | |
| TGGTTGGCAACAAAAGAAAA+AGG | - | chr8_3:59648358-59648377 | Msa1298810:three_prime_UTR | 35.0% | |
| GGTTGGCAACAAAAGAAAAA+GGG | - | chr8_3:59648359-59648378 | Msa1298810:three_prime_UTR | 35.0% | |
| AAAAAGGGAATCATCGATGA+AGG | - | chr8_3:59648374-59648393 | Msa1298810:three_prime_UTR | 35.0% | |
| AAAAGGGAATCATCGATGAA+GGG | - | chr8_3:59648375-59648394 | Msa1298810:three_prime_UTR | 35.0% | |
| ! | GAAGGGAACAATAAGGTATT+TGG | - | chr8_3:59648392-59648411 | Msa1298810:three_prime_UTR | 35.0% |
| TAGAGAATCGTGATCAAATG+TGG | - | chr8_3:59649076-59649095 | Msa1298810:intron | 35.0% | |
| !! | TTGTTTTGCAGAAACAATGC+AGG | - | chr8_3:59649251-59649270 | Msa1298810:intron | 35.0% |
| ! | CTTTTCAACCTCTCATATGT+AGG | + | chr8_3:59649360-59649379 | None:intergenic | 35.0% |
| TATTCATACATAGGTCACCT+AGG | + | chr8_3:59649537-59649556 | None:intergenic | 35.0% | |
| GAGACAGACAAAATCATTCA+AGG | + | chr8_3:59649575-59649594 | None:intergenic | 35.0% | |
| TTGTCTGTCTCCTTCTAATT+AGG | - | chr8_3:59649584-59649603 | Msa1298810:intron | 35.0% | |
| TATGTATATCGGACTAAACG+GGG | + | chr8_3:59649698-59649717 | None:intergenic | 35.0% | |
| ACGTGCGAGTTTATGTATAT+CGG | + | chr8_3:59649709-59649728 | None:intergenic | 35.0% | |
| !! | GTTCGTAAAATATAACGGGT+TGG | - | chr8_3:59649749-59649768 | Msa1298810:intron | 35.0% |
| !! | TCGTAAAATATAACGGGTTG+GGG | - | chr8_3:59649751-59649770 | Msa1298810:intron | 35.0% |
| !!! | ATACTAGCTTGTTTTACCCA+CGG | + | chr8_3:59649807-59649826 | None:intergenic | 35.0% |
| CTTTAGCAGTCTAATTATGG+TGG | - | chr8_3:59650004-59650023 | Msa1298810:intron | 35.0% | |
| !! | CATTTAAATTTTGGTCCGTG+TGG | + | chr8_3:59650098-59650117 | None:intergenic | 35.0% |
| CACACGGACCAAAATTTAAA+TGG | - | chr8_3:59650096-59650115 | Msa1298810:intron | 35.0% | |
| GTGATTAATCAAGTATCCCA+GGG | - | chr8_3:59650358-59650377 | Msa1298810:intron | 35.0% | |
| TGATTAATCAAGTATCCCAG+GGG | - | chr8_3:59650359-59650378 | Msa1298810:intron | 35.0% | |
| !!! | TTTCATGGACAGCCATTTTT+TGG | + | chr8_3:59650387-59650406 | None:intergenic | 35.0% |
| AGAAAAGAATACCCACAGAT+AGG | - | chr8_3:59650493-59650512 | Msa1298810:intron | 35.0% | |
| GCAAATAAAACAGGCATTCA+AGG | - | chr8_3:59650631-59650650 | Msa1298810:intron | 35.0% | |
| TGCAGAGAAAAGGAAACAAA+TGG | + | chr8_3:59650750-59650769 | None:intergenic | 35.0% | |
| AGCACATAAGGGCTTAATAA+CGG | - | chr8_3:59651128-59651147 | Msa1298810:intron | 35.0% | |
| AATCAGAAGCCAAAAAGCTA+TGG | - | chr8_3:59651522-59651541 | Msa1298810:CDS | 35.0% | |
| ! | GATACATGGTCTAGAATAGA+GGG | + | chr8_3:59651609-59651628 | None:intergenic | 35.0% |
| ! | AGATACATGGTCTAGAATAG+AGG | + | chr8_3:59651610-59651629 | None:intergenic | 35.0% |
| ACATTATAATCAAGGGGAAG+AGG | - | chr8_3:59651683-59651702 | Msa1298810:intron | 35.0% | |
| CATCGATGAAGGGAACAATA+AGG | - | chr8_3:59648385-59648404 | Msa1298810:three_prime_UTR | 40.0% | |
| ! | GGAACAATAAGGTATTTGGC+AGG | - | chr8_3:59648396-59648415 | Msa1298810:three_prime_UTR | 40.0% |
| GAATTTGAGCCAAAACCACT+AGG | + | chr8_3:59648432-59648451 | None:intergenic | 40.0% | |
| TGAGAGCTGTTAGGTTTGAA+GGG | + | chr8_3:59648494-59648513 | None:intergenic | 40.0% | |
| ATGAGAGCTGTTAGGTTTGA+AGG | + | chr8_3:59648495-59648514 | None:intergenic | 40.0% | |
| !! | TCAATTGAAGGTGCTACTTC+TGG | - | chr8_3:59648716-59648735 | Msa1298810:CDS | 40.0% |
| ! | GCTAGAGTGTTAGCAAAAAG+AGG | - | chr8_3:59648755-59648774 | Msa1298810:CDS | 40.0% |
| AAAAAGAGGAGTGAGAGTTG+TGG | - | chr8_3:59648769-59648788 | Msa1298810:CDS | 40.0% | |
| AGATTTGCGACTGCAATCTA+GGG | + | chr8_3:59649169-59649188 | None:intergenic | 40.0% | |
| ! | TTTTCTCTTCGGAGAATTCC+AGG | + | chr8_3:59649292-59649311 | None:intergenic | 40.0% |
| GTGTGGAATTCATATTCTGC+TGG | + | chr8_3:59649405-59649424 | None:intergenic | 40.0% | |
| CTGTCTCCTTCTAATTAGGT+AGG | - | chr8_3:59649588-59649607 | Msa1298810:intron | 40.0% | |
| TATCCACCTCTAACAAAGAG+TGG | + | chr8_3:59649661-59649680 | None:intergenic | 40.0% | |
| TTTGTTAGAGGTGGATACTC+TGG | - | chr8_3:59649664-59649683 | Msa1298810:CDS | 40.0% | |
| ! | TTTGTACTGTGTTGATCCGT+GGG | - | chr8_3:59649788-59649807 | Msa1298810:intron | 40.0% |
| GGGTAAAACAAGCTAGTATG+AGG | - | chr8_3:59649808-59649827 | Msa1298810:intron | 40.0% | |
| !! | TAAATTTTGGTCCGTGTGGT+TGG | + | chr8_3:59650094-59650113 | None:intergenic | 40.0% |
| CGTGATTAATCAAGTATCCC+AGG | - | chr8_3:59650357-59650376 | Msa1298810:intron | 40.0% | |
| !! | TGCTTTAAAGACATGCTCAC+TGG | - | chr8_3:59650709-59650728 | Msa1298810:intron | 40.0% |
| TTCCTTCACATGCAGAATCA+TGG | + | chr8_3:59650887-59650906 | None:intergenic | 40.0% | |
| GATTCTGCATGTGAAGGAAA+TGG | - | chr8_3:59650888-59650907 | Msa1298810:intron | 40.0% | |
| GGAAATGGCTAGACAACTAA+AGG | - | chr8_3:59650903-59650922 | Msa1298810:intron | 40.0% | |
| GCACATAAGGGCTTAATAAC+GGG | - | chr8_3:59651129-59651148 | Msa1298810:intron | 40.0% | |
| CTCTAAGCCAAAAAACCGAA+GGG | - | chr8_3:59651438-59651457 | Msa1298810:CDS | 40.0% | |
| TCTAAGCCAAAAAACCGAAG+GGG | - | chr8_3:59651439-59651458 | Msa1298810:CDS | 40.0% | |
| TATACACACACATGCATGCA+CGG | + | chr8_3:59651638-59651657 | None:intergenic | 40.0% | |
| AACCTAACAGCTCTCATCAC+TGG | - | chr8_3:59648498-59648517 | Msa1298810:three_prime_UTR | 45.0% | |
| TACCAGTGATGAGAGCTGTT+AGG | + | chr8_3:59648503-59648522 | None:intergenic | 45.0% | |
| !! | GAAGGTGCTACTTCTGGTAT+TGG | - | chr8_3:59648722-59648741 | Msa1298810:CDS | 45.0% |
| !! | CATAGCCTTTTTCATGTCCC+TGG | + | chr8_3:59648801-59648820 | None:intergenic | 45.0% |
| CAGTTGAGAAAAGGGAGATC+CGG | - | chr8_3:59649017-59649036 | Msa1298810:intron | 45.0% | |
| AGTTGAGAAAAGGGAGATCC+GGG | - | chr8_3:59649018-59649037 | Msa1298810:intron | 45.0% | |
| GAGATTTGCGACTGCAATCT+AGG | + | chr8_3:59649170-59649189 | None:intergenic | 45.0% | |
| ! | AGGAGTGTACTCTCATAACC+TGG | - | chr8_3:59649271-59649290 | Msa1298810:intron | 45.0% |
| GAGCTACAAACTAAAGGGTG+TGG | + | chr8_3:59649422-59649441 | None:intergenic | 45.0% | |
| TTAGGCTCAAACAGAGTCCT+AGG | - | chr8_3:59649517-59649536 | Msa1298810:intron | 45.0% | |
| TTAGAGGTGGATACTCTGGT+TGG | - | chr8_3:59649668-59649687 | Msa1298810:CDS | 45.0% | |
| ! | GTTTGTACTGTGTTGATCCG+TGG | - | chr8_3:59649787-59649806 | Msa1298810:intron | 45.0% |
| ! | AAATTGGTTCAAAGCCCCTG+TGG | - | chr8_3:59650126-59650145 | Msa1298810:intron | 45.0% |
| TGAACAAGTCCGTTAACACG+CGG | + | chr8_3:59650153-59650172 | None:intergenic | 45.0% | |
| !! | ATCCCAGGGGTACCAAAAAA+TGG | - | chr8_3:59650372-59650391 | Msa1298810:intron | 45.0% |
| !!! | AGCCATTTTTTGGTACCCCT+GGG | + | chr8_3:59650377-59650396 | None:intergenic | 45.0% |
| ATAGGCAACAGAGAGGGATT+TGG | - | chr8_3:59650511-59650530 | Msa1298810:intron | 45.0% | |
| AGCCATGATTCTGCATGTGA+AGG | - | chr8_3:59650882-59650901 | Msa1298810:intron | 45.0% | |
| ACTATCAATGCAGTGCATCC+AGG | - | chr8_3:59651081-59651100 | Msa1298810:intron | 45.0% | |
| ATTCCTGTCTTCACAATGCC+TGG | + | chr8_3:59651102-59651121 | None:intergenic | 45.0% | |
| GCTGCTCAAAACGATATCAC+AGG | - | chr8_3:59651278-59651297 | Msa1298810:intron | 45.0% | |
| ! | GCTCTAAGCCAAAAAACCGA+AGG | - | chr8_3:59651437-59651456 | Msa1298810:CDS | 45.0% |
| AAAAAACCGAAGGGGTGAGT+GGG | - | chr8_3:59651447-59651466 | Msa1298810:CDS | 45.0% | |
| CGACTTAGACAAGCAGCAAT+TGG | - | chr8_3:59651572-59651591 | Msa1298810:CDS | 45.0% | |
| ATGCACGGTGTCTAGATACA+TGG | + | chr8_3:59651623-59651642 | None:intergenic | 45.0% | |
| ! | AGGTATTTGGCAGGCATTGC+AGG | - | chr8_3:59648405-59648424 | Msa1298810:three_prime_UTR | 50.0% |
| ! | GGTATTTGGCAGGCATTGCA+GGG | - | chr8_3:59648406-59648425 | Msa1298810:three_prime_UTR | 50.0% |
| ! | ATTGCAGGGCCTAGTGGTTT+TGG | - | chr8_3:59648420-59648439 | Msa1298810:three_prime_UTR | 50.0% |
| GAGCTGTTAGGTTTGAAGGG+AGG | + | chr8_3:59648491-59648510 | None:intergenic | 50.0% | |
| AGAGGAGTGAGAGTTGTGGT+TGG | - | chr8_3:59648773-59648792 | Msa1298810:CDS | 50.0% | |
| ! | TGGTGCCAGGGACATGAAAA+AGG | - | chr8_3:59648793-59648812 | Msa1298810:CDS | 50.0% |
| CAGCATAAGGACTCTCCTCT+TGG | + | chr8_3:59648841-59648860 | None:intergenic | 50.0% | |
| AGAGGAGAGTCCTTATGCTG+AGG | - | chr8_3:59648841-59648860 | Msa1298810:CDS | 50.0% | |
| GGACAGCCACTCTTTGTTAG+AGG | - | chr8_3:59649652-59649671 | Msa1298810:CDS | 50.0% | |
| CAGCCACTCTTTGTTAGAGG+TGG | - | chr8_3:59649655-59649674 | Msa1298810:CDS | 50.0% | |
| TATATCGGACTAAACGGGGC+GGG | + | chr8_3:59649694-59649713 | None:intergenic | 50.0% | |
| GTATATCGGACTAAACGGGG+CGG | + | chr8_3:59649695-59649714 | None:intergenic | 50.0% | |
| GTCTAAACGGTCCAACCACA+CGG | - | chr8_3:59650080-59650099 | Msa1298810:intron | 50.0% | |
| !!! | CAGCCATTTTTTGGTACCCC+TGG | + | chr8_3:59650378-59650397 | None:intergenic | 50.0% |
| CCTCTCTGTTGCCTATCTGT+GGG | + | chr8_3:59650507-59650526 | None:intergenic | 50.0% | |
| CCACAGATAGGCAACAGAGA+GGG | - | chr8_3:59650505-59650524 | Msa1298810:intron | 50.0% | |
| ! | CATCCAGGCATTGTGAAGAC+AGG | - | chr8_3:59651096-59651115 | Msa1298810:intron | 50.0% |
| !!! | CACTCACCCCTTCGGTTTTT+TGG | + | chr8_3:59651448-59651467 | None:intergenic | 50.0% |
| CAAAAAACCGAAGGGGTGAG+TGG | - | chr8_3:59651446-59651465 | Msa1298810:CDS | 50.0% | |
| GAATTTCCCACTCACCCCTT+CGG | + | chr8_3:59651456-59651475 | None:intergenic | 50.0% | |
| GATACCAGAGGAGATGAGAG+AGG | + | chr8_3:59651929-59651948 | None:intergenic | 50.0% | |
| ! | TGAGAGTTGTGGTTGGTGCC+AGG | - | chr8_3:59648780-59648799 | Msa1298810:CDS | 55.0% |
| !! | GAGAGTTGTGGTTGGTGCCA+GGG | - | chr8_3:59648781-59648800 | Msa1298810:CDS | 55.0% |
| CCCACAGATAGGCAACAGAG+AGG | - | chr8_3:59650504-59650523 | Msa1298810:intron | 55.0% | |
| CCCTCTCTGTTGCCTATCTG+TGG | + | chr8_3:59650508-59650527 | None:intergenic | 55.0% | |
| CCAGAGGAGATGAGAGAGGA+AGG | + | chr8_3:59651925-59651944 | None:intergenic | 55.0% | |
| CCTTCCTCTCTCATCTCCTC+TGG | - | chr8_3:59651922-59651941 | Msa1298810:CDS | 55.0% | |
| CGTTAACACGCGGTCCACAG+GGG | + | chr8_3:59650143-59650162 | None:intergenic | 60.0% | |
| CCGTTAACACGCGGTCCACA+GGG | + | chr8_3:59650144-59650163 | None:intergenic | 60.0% | |
| CCCTGTGGACCGCGTGTTAA+CGG | - | chr8_3:59650141-59650160 | Msa1298810:intron | 60.0% | |
| TCCGTTAACACGCGGTCCAC+AGG | + | chr8_3:59650145-59650164 | None:intergenic | 60.0% | |
| ! | GCAGGCATTGCAGGGCCTAG+TGG | - | chr8_3:59648414-59648433 | Msa1298810:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 59648354 | 59651976 | 59648354 | ID=Msa1298810;Name=Msa1298810 |
| chr8_3 | mRNA | 59648354 | 59651976 | 59648354 | ID=Msa1298810-mRNA-1;Parent=Msa1298810;Name=Msa1298810-mRNA-1;_AED=0.21;_eAED=0.21;_QI=3|1|1|1|0.87|0.77|9|304|353 |
| chr8_3 | exon | 59648354 | 59648441 | 59648354 | ID=Msa1298810-mRNA-1:exon:17313;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59648483 | 59648917 | 59648483 | ID=Msa1298810-mRNA-1:exon:17312;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59649031 | 59649077 | 59649031 | ID=Msa1298810-mRNA-1:exon:17311;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59649180 | 59649267 | 59649180 | ID=Msa1298810-mRNA-1:exon:17310;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59649406 | 59649484 | 59649406 | ID=Msa1298810-mRNA-1:exon:17309;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59649593 | 59649746 | 59649593 | ID=Msa1298810-mRNA-1:exon:17308;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59650989 | 59651068 | 59650989 | ID=Msa1298810-mRNA-1:exon:17307;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59651373 | 59651604 | 59651373 | ID=Msa1298810-mRNA-1:exon:17306;Parent=Msa1298810-mRNA-1 |
| chr8_3 | exon | 59651811 | 59651976 | 59651811 | ID=Msa1298810-mRNA-1:exon:17305;Parent=Msa1298810-mRNA-1 |
| chr8_3 | five_prime_UTR | 59651974 | 59651976 | 59651974 | ID=Msa1298810-mRNA-1:five_prime_utr;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59651811 | 59651973 | 59651811 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59651373 | 59651604 | 59651373 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59650989 | 59651068 | 59650989 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59649593 | 59649746 | 59649593 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59649406 | 59649484 | 59649406 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59649180 | 59649267 | 59649180 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59649031 | 59649077 | 59649031 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | CDS | 59648699 | 59648917 | 59648699 | ID=Msa1298810-mRNA-1:cds;Parent=Msa1298810-mRNA-1 |
| chr8_3 | three_prime_UTR | 59648483 | 59648698 | 59648483 | ID=Msa1298810-mRNA-1:three_prime_utr;Parent=Msa1298810-mRNA-1 |
| chr8_3 | three_prime_UTR | 59648354 | 59648441 | 59648354 | ID=Msa1298810-mRNA-1:three_prime_utr;Parent=Msa1298810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
