AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251150 MtrunA17_Chr2g0309391 95.053 283 10 1 1 283 1 279 0.0 540
Msa0251150 MtrunA17_Chr3g0122831 40.367 109 64 1 62 170 14 121 7.59e-20 84.3
Msa0251150 MtrunA17_Chr2g0322301 36.607 112 70 1 65 176 26 136 4.65e-18 79.7
Msa0251150 MtrunA17_Chr7g0275651 35.484 93 59 1 84 176 114 205 1.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251150 AT3G12685.1 45.570 237 70 5 46 282 35 212 5.35e-59 187
Msa0251150 AT1G24350.2 38.679 106 64 1 65 170 22 126 1.30e-18 80.9
Msa0251150 AT1G24350.4 38.679 106 64 1 65 170 22 126 1.32e-18 80.9
Msa0251150 AT1G24350.5 38.679 106 64 1 65 170 22 126 1.91e-18 80.5
Msa0251150 AT1G24350.1 38.679 106 64 1 65 170 22 126 5.30e-18 79.7
Msa0251150 AT1G24350.3 38.679 106 64 1 65 170 22 126 6.28e-18 80.1
Msa0251150 AT3G21610.1 38.318 107 65 1 64 170 32 137 9.61e-18 79.3
Msa0251150 AT1G67600.1 36.792 106 66 1 65 170 18 122 1.65e-16 75.5
Msa0251150 AT3G21610.2 41.772 79 46 0 92 170 7 85 1.52e-15 72.0
Msa0251150 AT3G61770.1 32.203 118 79 1 59 176 134 250 4.16e-14 71.2

Find 65 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGTAATATCTAGGTTTA+TGG 0.177934 2_2:-40357358 Msa0251150:three_prime_UTR
TATCAGACCCTCTTTATATT+TGG 0.178412 2_2:+40357782 None:intergenic
GTTCCAAGAAACCACTTCTT+TGG 0.226096 2_2:-40357700 Msa0251150:CDS
TCTATAACCTATTCAATATA+AGG 0.257270 2_2:+40357409 None:intergenic
ACTCTGATACACATGATATT+TGG 0.282214 2_2:+40357322 None:intergenic
TTGAACTGCGCAAGCAAAAT+AGG 0.307337 2_2:-40361508 Msa0251150:five_prime_UTR
GAAACATGTTTGGTTGGTTA+AGG 0.332531 2_2:+40361446 None:intergenic
GTTCCAAAGAAGTGGTTTCT+TGG 0.334368 2_2:+40357697 None:intergenic
TACAGAAACACAGAAGTAAA+TGG 0.337447 2_2:+40360570 None:intergenic
TTAAATCAGGAAGCATAATA+AGG 0.350575 2_2:-40357647 Msa0251150:CDS
ATTTCTTCTCTTGCTGCTGC+TGG 0.351086 2_2:-40361263 Msa0251150:CDS
GCTGGAGTTTCAATGGCAAT+TGG 0.360865 2_2:-40360606 Msa0251150:CDS
AAGTGGTTTCTTGGAACAAA+AGG 0.368554 2_2:+40357706 None:intergenic
TTTACTTCTGTGTTTCTGTA+TGG 0.371099 2_2:-40360567 Msa0251150:CDS
ATTTATTATTATTGATCAAA+TGG 0.373625 2_2:-40357295 Msa0251150:three_prime_UTR
TGTTATACCTTATATTGAAT+AGG 0.389991 2_2:-40357416 Msa0251150:three_prime_UTR
CTTTATATTTGGAATGTACA+TGG 0.402977 2_2:+40357793 None:intergenic
GTGGTAGCTGGTGGTTTACT+TGG 0.410497 2_2:-40357507 Msa0251150:CDS
AGTAAACAATGAAACATGTT+TGG 0.413668 2_2:+40361436 None:intergenic
AATTGTTGATGATGAAGAAA+TGG 0.414445 2_2:+40361329 None:intergenic
CAGGGTGTAAGAAGAGAAGT+AGG 0.415373 2_2:-40357864 Msa0251150:CDS
GTGGCTTGTGCAACATTACT+TGG 0.416239 2_2:-40360363 Msa0251150:CDS
AGTGAGGGAAATTGAGAAGA+AGG 0.418480 2_2:+40361365 None:intergenic
CAACAAACTACTTCTCCAAA+TGG 0.418502 2_2:-40357823 Msa0251150:CDS
GATTGCAGCTGGAGTTTCAA+TGG 0.421077 2_2:-40360613 Msa0251150:CDS
CTGGAGTTTCAATGGCAATT+GGG 0.423404 2_2:-40360605 Msa0251150:CDS
GGTCTTGCAGTTGTGTATGC+TGG 0.423581 2_2:-40360187 Msa0251150:CDS
ACAAATGTATTAGTTAAATC+AGG 0.423899 2_2:-40357660 Msa0251150:CDS
GTACATGGTTGACATCCATT+TGG 0.431928 2_2:+40357808 None:intergenic
GCTTAGGTTCTGATTGCAGC+TGG 0.432168 2_2:-40360624 Msa0251150:intron
TCCTTTCTACGAAAACTGAA+TGG 0.434415 2_2:+40361305 None:intergenic
ACCATCAGCAACCAACTTTG+AGG 0.436219 2_2:+40357572 None:intergenic
AAATCAAGTCAGTAATATCT+AGG 0.445071 2_2:-40357365 Msa0251150:three_prime_UTR
TCTGATTATGTATGATGCTC+AGG 0.450552 2_2:-40360164 Msa0251150:intron
CATACAGAAGAGTGTGATGA+TGG 0.451794 2_2:+40360501 None:intergenic
AACAATGAAACATGTTTGGT+TGG 0.464548 2_2:+40361440 None:intergenic
TTTGGTGGATTGGATGATCC+AGG 0.472553 2_2:+40357750 None:intergenic
TTGGTTAAGGTAACATGCTA+TGG 0.478697 2_2:+40361459 None:intergenic
ATCAAGGCTCTTATTCAAGC+TGG 0.483515 2_2:-40360531 Msa0251150:CDS
CTGAATTATCTTACCTCTCA+AGG 0.488483 2_2:+40360340 None:intergenic
AGTGGTTTCTTGGAACAAAA+GGG 0.494613 2_2:+40357707 None:intergenic
TGCAAAAGAAACCTCAAAGT+TGG 0.498213 2_2:-40357583 Msa0251150:CDS
TGGCAAAGAGTTTGATATCA+AGG 0.498368 2_2:-40360547 Msa0251150:CDS
ACCTCAAAGTTGGTTGCTGA+TGG 0.499074 2_2:-40357573 Msa0251150:CDS
TGGATTTCTTTGTTTGAGTG+AGG 0.504915 2_2:+40361349 None:intergenic
TGTACATTCCAAATATAAAG+AGG 0.527963 2_2:-40357790 Msa0251150:CDS
AGCAAGAGAAGAAATTCTAA+AGG 0.529822 2_2:+40361271 None:intergenic
CTGCCATTAAAAGAAACTGT+TGG 0.534103 2_2:-40357546 Msa0251150:CDS
CGCTCAAATTGCTCATAACA+AGG 0.534303 2_2:-40361225 Msa0251150:intron
ACATTTGTATTAGCTTGTTG+TGG 0.534702 2_2:+40357675 None:intergenic
GGATTTCTTTGTTTGAGTGA+GGG 0.539654 2_2:+40361350 None:intergenic
CAACATTACTTGGCCTTGAG+AGG 0.541258 2_2:-40360353 Msa0251150:intron
ACTGAGGTTGAAGTGGTAGC+TGG 0.555392 2_2:-40357519 Msa0251150:CDS
TTGTTGTGGTTCCAAAGAAG+TGG 0.567196 2_2:+40357689 None:intergenic
TGCATCTTCTAAGAAATCAG+AGG 0.571365 2_2:+40357602 None:intergenic
AGGGTGTAAGAAGAGAAGTA+GGG 0.572177 2_2:-40357863 Msa0251150:CDS
AAGGCTCTTATTCAAGCTGG+AGG 0.574041 2_2:-40360528 Msa0251150:CDS
GTACATTCCAAATATAAAGA+GGG 0.618220 2_2:-40357789 Msa0251150:CDS
CATGCTATGGATAATATGAG+AGG 0.618536 2_2:+40361472 None:intergenic
ATACAGAAGAGTGTGATGAT+GGG 0.621467 2_2:+40360502 None:intergenic
AGGCTCTTATTCAAGCTGGA+GGG 0.631515 2_2:-40360527 Msa0251150:CDS
TGGTCATACTGAGGTTGAAG+TGG 0.656520 2_2:-40357526 Msa0251150:CDS
GGTCTGATAAACTCTCAACC+TGG 0.659859 2_2:-40357768 Msa0251150:CDS
GAGGTTGAAGTGGTAGCTGG+TGG 0.665793 2_2:-40357516 Msa0251150:CDS
AGAAACTGTTGGTCATACTG+AGG 0.680359 2_2:-40357535 Msa0251150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCTTTTTTTATAAGAAA+AGG + chr2_2:40359436-40359455 None:intergenic 10.0%
!! TATGATTATGAATTTATTTA+TGG - chr2_2:40360521-40360540 Msa0251150:CDS 10.0%
!!! GGTTTTATATAATATAAATA+AGG + chr2_2:40360804-40360823 None:intergenic 10.0%
!! ATTTATTATTATTGATCAAA+TGG - chr2_2:40361484-40361503 Msa0251150:five_prime_UTR 10.0%
!!! TGATTTTCTCAAATAATTAT+TGG - chr2_2:40357772-40357791 Msa0251150:CDS 15.0%
!! CAACAAAACAATATAAAATT+TGG + chr2_2:40358087-40358106 None:intergenic 15.0%
!!! TAGTTGTTTAAATTTTCTTT+TGG - chr2_2:40358383-40358402 Msa0251150:intron 15.0%
!! AACTAAATAACATGAAAAAT+GGG + chr2_2:40358660-40358679 None:intergenic 15.0%
!! AAACTAAATAACATGAAAAA+TGG + chr2_2:40358661-40358680 None:intergenic 15.0%
!!! GGATTTTTTTTTTTTTTTTG+CGG + chr2_2:40360213-40360232 None:intergenic 15.0%
!!! TTTTTTCATGTTAATGTTAA+TGG - chr2_2:40360463-40360482 Msa0251150:intron 15.0%
!! TATGAATTTATTTATGGTTA+TGG - chr2_2:40360527-40360546 Msa0251150:CDS 15.0%
!! AAAACAAGTGATACAAAAAT+GGG + chr2_2:40357583-40357602 None:intergenic 20.0%
!! AAAAACAAGTGATACAAAAA+TGG + chr2_2:40357584-40357603 None:intergenic 20.0%
!!! TGAAAAATGTGTTTTTAAGT+GGG - chr2_2:40358009-40358028 Msa0251150:intron 20.0%
!!! TTTGTGATATTTTTTTGCTT+AGG - chr2_2:40358139-40358158 Msa0251150:intron 20.0%
!!! GTTTAAATTTTCTTTTGGAT+AGG - chr2_2:40358388-40358407 Msa0251150:intron 20.0%
!! ATCAATGATTAAACTATTTG+TGG - chr2_2:40358833-40358852 Msa0251150:intron 20.0%
!! TTTAGATTACTAACTAATTC+AGG - chr2_2:40359298-40359317 Msa0251150:intron 20.0%
!! AATAAGATTTCTATGTTGTA+AGG + chr2_2:40359532-40359551 None:intergenic 20.0%
!!! AATTTACTTATTTCTTGTGA+AGG - chr2_2:40359670-40359689 Msa0251150:intron 20.0%
!! ATTCATAATCATAAATACAG+AGG + chr2_2:40360514-40360533 None:intergenic 20.0%
!! ACAAATGTATTAGTTAAATC+AGG - chr2_2:40361119-40361138 Msa0251150:intron 20.0%
!! TGTTATACCTTATATTGAAT+AGG - chr2_2:40361363-40361382 Msa0251150:CDS 20.0%
!! TCTATAACCTATTCAATATA+AGG + chr2_2:40361373-40361392 None:intergenic 20.0%
! AGTAAACAATGAAACATGTT+TGG + chr2_2:40357346-40357365 None:intergenic 25.0%
!!! AATTGTTGATGATGAAGAAA+TGG + chr2_2:40357453-40357472 None:intergenic 25.0%
!! TCAAATAATTATTGGTAACC+CGG - chr2_2:40357780-40357799 Msa0251150:CDS 25.0%
! CTATCAAATATTCGTTAGTT+AGG - chr2_2:40357887-40357906 Msa0251150:intron 25.0%
!!! CTGAAAAATGTGTTTTTAAG+TGG - chr2_2:40358008-40358027 Msa0251150:intron 25.0%
!!! GAAAAATGTGTTTTTAAGTG+GGG - chr2_2:40358010-40358029 Msa0251150:intron 25.0%
! TGTTTATTATACAAATGCAG+AGG - chr2_2:40358550-40358569 Msa0251150:intron 25.0%
! AAACTTAATGAAGGAATCTT+AGG - chr2_2:40358751-40358770 Msa0251150:intron 25.0%
! AGCAAATATACTCAATATCT+TGG + chr2_2:40358798-40358817 None:intergenic 25.0%
! TCATTAACATTTCAACCTAT+AGG - chr2_2:40359111-40359130 Msa0251150:intron 25.0%
! CAATATTCTTCCATTAGTTA+GGG + chr2_2:40359268-40359287 None:intergenic 25.0%
! ACAATATTCTTCCATTAGTT+AGG + chr2_2:40359269-40359288 None:intergenic 25.0%
! TTTAAAGACTTCTTTATCTG+AGG + chr2_2:40359352-40359371 None:intergenic 25.0%
!! AGATAAAGAAGTCTTTAAAG+AGG - chr2_2:40359353-40359372 Msa0251150:intron 25.0%
!! GATAAAGAAGTCTTTAAAGA+GGG - chr2_2:40359354-40359373 Msa0251150:intron 25.0%
! TCAAATAAGTCAATCAAAAG+AGG + chr2_2:40359843-40359862 None:intergenic 25.0%
! AACACAAAAATGAAGAAAAC+TGG + chr2_2:40360310-40360329 None:intergenic 25.0%
! TGTTTATGAACCTAGTTTAA+TGG - chr2_2:40360569-40360588 Msa0251150:CDS 25.0%
!!! AATATAAATAAGGCCTTGTT+CGG + chr2_2:40360794-40360813 None:intergenic 25.0%
! ACAGAATGATAAAAGGATAA+AGG + chr2_2:40360825-40360844 None:intergenic 25.0%
! AACAGAAACAGAATGATAAA+AGG + chr2_2:40360832-40360851 None:intergenic 25.0%
!!! TATTGAACATGATTGTTTTG+TGG - chr2_2:40360852-40360871 Msa0251150:intron 25.0%
!!! ATTGAACATGATTGTTTTGT+GGG - chr2_2:40360853-40360872 Msa0251150:intron 25.0%
!! CTTTATATTTGGAATGTACA+TGG + chr2_2:40360989-40361008 None:intergenic 25.0%
! TGTACATTCCAAATATAAAG+AGG - chr2_2:40360989-40361008 Msa0251150:intron 25.0%
! GTACATTCCAAATATAAAGA+GGG - chr2_2:40360990-40361009 Msa0251150:intron 25.0%
!! TTAAATCAGGAAGCATAATA+AGG - chr2_2:40361132-40361151 Msa0251150:intron 25.0%
! AAATCAAGTCAGTAATATCT+AGG - chr2_2:40361414-40361433 Msa0251150:exon 25.0%
AACAATGAAACATGTTTGGT+TGG + chr2_2:40357342-40357361 None:intergenic 30.0%
AGCAAGAGAAGAAATTCTAA+AGG + chr2_2:40357511-40357530 None:intergenic 30.0%
! TTTTATGTCTCTGCAAATCT+TGG - chr2_2:40357600-40357619 Msa0251150:CDS 30.0%
TTTATGTCTCTGCAAATCTT+GGG - chr2_2:40357601-40357620 Msa0251150:CDS 30.0%
! CAAATAATTATTGGTAACCC+GGG - chr2_2:40357781-40357800 Msa0251150:CDS 30.0%
!! ACGTTTTTGAGAACATGTTT+AGG + chr2_2:40357846-40357865 None:intergenic 30.0%
!!! CTCAAAAACGTGTTTTAAGA+TGG - chr2_2:40357855-40357874 Msa0251150:CDS 30.0%
AAAATCGATCTATACGATGA+GGG + chr2_2:40358042-40358061 None:intergenic 30.0%
!! ATCGTATAGATCGATTTTGT+AGG - chr2_2:40358044-40358063 Msa0251150:intron 30.0%
!! TGTTGTTTCATTTGCTGAAT+TGG - chr2_2:40358102-40358121 Msa0251150:intron 30.0%
! GTTGTTTCATTTGCTGAATT+GGG - chr2_2:40358103-40358122 Msa0251150:intron 30.0%
TACAGAAACACAGAAGTAAA+TGG + chr2_2:40358212-40358231 None:intergenic 30.0%
! TTTACTTCTGTGTTTCTGTA+TGG - chr2_2:40358212-40358231 Msa0251150:intron 30.0%
! AAGTAGGATTTACTGGTTAA+GGG + chr2_2:40358313-40358332 None:intergenic 30.0%
! AAAGTAGGATTTACTGGTTA+AGG + chr2_2:40358314-40358333 None:intergenic 30.0%
GAAATGAAAGTAGGATTTAC+TGG + chr2_2:40358320-40358339 None:intergenic 30.0%
GACTATGTCAAACTTAATGA+AGG - chr2_2:40358742-40358761 Msa0251150:intron 30.0%
TATTTGTGGAATTCTTACCA+TGG - chr2_2:40358847-40358866 Msa0251150:intron 30.0%
TACTGTTAGTAAACAGGAAA+TGG - chr2_2:40358873-40358892 Msa0251150:intron 30.0%
GAAATGTTAATGAAGTGACA+AGG + chr2_2:40359104-40359123 None:intergenic 30.0%
! TCATTTGCTAAGTTTCCTAT+AGG + chr2_2:40359129-40359148 None:intergenic 30.0%
ATAGGAAACTTAGCAAATGA+AGG - chr2_2:40359129-40359148 Msa0251150:intron 30.0%
AGGTTCTACAAAGAAAAGAA+TGG - chr2_2:40359149-40359168 Msa0251150:intron 30.0%
! AAAAGAATGGATGTCACTTA+GGG - chr2_2:40359162-40359181 Msa0251150:intron 30.0%
! TTTATCTCAGACATGGATTA+TGG - chr2_2:40359219-40359238 Msa0251150:intron 30.0%
AAAGCTTAAAAGCCTTCAAT+AGG - chr2_2:40359479-40359498 Msa0251150:intron 30.0%
TATGTTGTAAGGATTGTTTC+AGG + chr2_2:40359521-40359540 None:intergenic 30.0%
AATATATCCTCTACGTATAC+AGG + chr2_2:40359565-40359584 None:intergenic 30.0%
GTGTGAAGTAAACAACAAAA+GGG + chr2_2:40359645-40359664 None:intergenic 30.0%
TGTGTGAAGTAAACAACAAA+AGG + chr2_2:40359646-40359665 None:intergenic 30.0%
ATAATTACAGGGTGAACAAA+AGG + chr2_2:40359714-40359733 None:intergenic 30.0%
AAAACATTGTCCATAGTCAA+TGG - chr2_2:40359746-40359765 Msa0251150:intron 30.0%
TATCGCAGATGAAAACTTAT+TGG - chr2_2:40359808-40359827 Msa0251150:intron 30.0%
TGAAAACTTATTGGTACTTG+TGG - chr2_2:40359817-40359836 Msa0251150:intron 30.0%
TAAGTATTCGTGAGACTATT+TGG - chr2_2:40359878-40359897 Msa0251150:intron 30.0%
TTATAGAGATACGCTCAAAA+TGG + chr2_2:40359941-40359960 None:intergenic 30.0%
TACGATCATACAATTCAGAA+TGG - chr2_2:40360074-40360093 Msa0251150:intron 30.0%
ACGATCATACAATTCAGAAT+GGG - chr2_2:40360075-40360094 Msa0251150:intron 30.0%
CTAAATCACACCATTAAACT+AGG + chr2_2:40360582-40360601 None:intergenic 30.0%
AGTTTAATGGTGTGATTTAG+AGG - chr2_2:40360582-40360601 Msa0251150:CDS 30.0%
!! AGATCTTAACTTGTTGATCA+CGG + chr2_2:40360665-40360684 None:intergenic 30.0%
TATCAGACCCTCTTTATATT+TGG + chr2_2:40361000-40361019 None:intergenic 30.0%
! TTTTCTTGAGTTTCTGCTTT+TGG + chr2_2:40361050-40361069 None:intergenic 30.0%
!! ACATTTGTATTAGCTTGTTG+TGG + chr2_2:40361107-40361126 None:intergenic 30.0%
! TGACCAACAGTTTCTTTTAA+TGG + chr2_2:40361239-40361258 None:intergenic 30.0%
!!! GTTTACTTGGATTTTTGGTT+GGG - chr2_2:40361285-40361304 Msa0251150:CDS 30.0%
GTCAGTAATATCTAGGTTTA+TGG - chr2_2:40361421-40361440 Msa0251150:exon 30.0%
ACTCTGATACACATGATATT+TGG + chr2_2:40361460-40361479 None:intergenic 30.0%
CATGCTATGGATAATATGAG+AGG + chr2_2:40357310-40357329 None:intergenic 35.0%
TTGGTTAAGGTAACATGCTA+TGG + chr2_2:40357323-40357342 None:intergenic 35.0%
! GAAACATGTTTGGTTGGTTA+AGG + chr2_2:40357336-40357355 None:intergenic 35.0%
! GGATTTCTTTGTTTGAGTGA+GGG + chr2_2:40357432-40357451 None:intergenic 35.0%
! TGGATTTCTTTGTTTGAGTG+AGG + chr2_2:40357433-40357452 None:intergenic 35.0%
! TCCATTCAGTTTTCGTAGAA+AGG - chr2_2:40357473-40357492 Msa0251150:CDS 35.0%
TCCTTTCTACGAAAACTGAA+TGG + chr2_2:40357477-40357496 None:intergenic 35.0%
!!! AGGCTACTTTTACACACTAT+CGG - chr2_2:40357907-40357926 Msa0251150:intron 35.0%
AGACTATATCTCATCCAATG+TGG + chr2_2:40357990-40358009 None:intergenic 35.0%
CAAAATCGATCTATACGATG+AGG + chr2_2:40358043-40358062 None:intergenic 35.0%
TGGCAAAGAGTTTGATATCA+AGG - chr2_2:40358232-40358251 Msa0251150:intron 35.0%
! ATACAGAAGAGTGTGATGAT+GGG + chr2_2:40358280-40358299 None:intergenic 35.0%
GGCATAGATGAAATGAAAGT+AGG + chr2_2:40358329-40358348 None:intergenic 35.0%
GTGAAACAACACTATTCAAG+TGG + chr2_2:40358350-40358369 None:intergenic 35.0%
CTGAATTATCTTACCTCTCA+AGG + chr2_2:40358442-40358461 None:intergenic 35.0%
!! TCAGTTATGCTGACTTAGTA+TGG - chr2_2:40358458-40358477 Msa0251150:intron 35.0%
ACAACTGCAAGACCAAAAAT+GGG + chr2_2:40358586-40358605 None:intergenic 35.0%
TCTGATTATGTATGATGCTC+AGG - chr2_2:40358615-40358634 Msa0251150:intron 35.0%
GAATCCTAGCATAGTCAAAA+GGG + chr2_2:40358711-40358730 None:intergenic 35.0%
TTGACATAGTCTAAGTACAG+TGG + chr2_2:40358733-40358752 None:intergenic 35.0%
GTTTACTAACAGTAACACCA+TGG + chr2_2:40358867-40358886 None:intergenic 35.0%
!! TGGTGTTACTGTTAGTAAAC+AGG - chr2_2:40358867-40358886 Msa0251150:intron 35.0%
! ATCGTATCAAACACTCCTTT+TGG - chr2_2:40359048-40359067 Msa0251150:intron 35.0%
CCTATACAAATGAGACCAAA+AGG + chr2_2:40359066-40359085 None:intergenic 35.0%
! CCTTTTGGTCTCATTTGTAT+AGG - chr2_2:40359063-40359082 Msa0251150:intron 35.0%
! GAAAAGAATGGATGTCACTT+AGG - chr2_2:40359161-40359180 Msa0251150:intron 35.0%
GGACTTATTTATCTCAGACA+TGG - chr2_2:40359212-40359231 Msa0251150:intron 35.0%
TCAATAGGATAGCCTATTGA+AGG + chr2_2:40359494-40359513 None:intergenic 35.0%
TCAGAGTGAGGATAATTACA+GGG + chr2_2:40359725-40359744 None:intergenic 35.0%
! TAGACTTAAGCCATTGACTA+TGG + chr2_2:40359759-40359778 None:intergenic 35.0%
AGTCTCACGAATACTTATGT+CGG + chr2_2:40359875-40359894 None:intergenic 35.0%
TATTCGTGAGACTATTTGGA+AGG - chr2_2:40359882-40359901 Msa0251150:intron 35.0%
ATTCGTGAGACTATTTGGAA+GGG - chr2_2:40359883-40359902 Msa0251150:intron 35.0%
ATACGCTCAAAATGGCTTAT+GGG + chr2_2:40359933-40359952 None:intergenic 35.0%
CGTATCTCTATAAGTTCTTC+AGG - chr2_2:40359948-40359967 Msa0251150:intron 35.0%
TTGTAGAATCGTGAGTATGA+TGG - chr2_2:40360033-40360052 Msa0251150:intron 35.0%
TCCCAAGAATACAACCTTAA+CGG + chr2_2:40360118-40360137 None:intergenic 35.0%
ACCAAGAAAATTCCCCAATT+CGG - chr2_2:40360182-40360201 Msa0251150:CDS 35.0%
!!! TCCTGTTTTTTAATGCTCAC+TGG - chr2_2:40360230-40360249 Msa0251150:intron 35.0%
ACCAGTGAGCATTAAAAAAC+AGG + chr2_2:40360234-40360253 None:intergenic 35.0%
!!! TTTTTTAATGCTCACTGGTG+CGG - chr2_2:40360235-40360254 Msa0251150:intron 35.0%
! TTAAGTTGCTTATCCGAACA+AGG - chr2_2:40360778-40360797 Msa0251150:intron 35.0%
CAGAAATCAGTCTTCATTGT+AGG + chr2_2:40360888-40360907 None:intergenic 35.0%
! ACTGATTTCTGTGATTTGCA+GGG - chr2_2:40360897-40360916 Msa0251150:intron 35.0%
CAACAAACTACTTCTCCAAA+TGG - chr2_2:40360956-40360975 Msa0251150:intron 35.0%
AGTGGTTTCTTGGAACAAAA+GGG + chr2_2:40361075-40361094 None:intergenic 35.0%
AAGTGGTTTCTTGGAACAAA+AGG + chr2_2:40361076-40361095 None:intergenic 35.0%
! TGCATCTTCTAAGAAATCAG+AGG + chr2_2:40361180-40361199 None:intergenic 35.0%
TGCAAAAGAAACCTCAAAGT+TGG - chr2_2:40361196-40361215 Msa0251150:intron 35.0%
CTGCCATTAAAAGAAACTGT+TGG - chr2_2:40361233-40361252 Msa0251150:CDS 35.0%
! TGGTGGTTTACTTGGATTTT+TGG - chr2_2:40361280-40361299 Msa0251150:CDS 35.0%
!!! GGTTTACTTGGATTTTTGGT+TGG - chr2_2:40361284-40361303 Msa0251150:CDS 35.0%
TTGAACTGCGCAAGCAAAAT+AGG - chr2_2:40357271-40357290 Msa0251150:three_prime_UTR 40.0%
AGTGAGGGAAATTGAGAAGA+AGG + chr2_2:40357417-40357436 None:intergenic 40.0%
CGCTCAAATTGCTCATAACA+AGG - chr2_2:40357554-40357573 Msa0251150:CDS 40.0%
GTACGTTGTGCTCATCTAAT+TGG + chr2_2:40357682-40357701 None:intergenic 40.0%
!! GTACCGACACTTTTGATCAA+AGG - chr2_2:40357698-40357717 Msa0251150:CDS 40.0%
! ACGCCTTTGATCAAAAGTGT+CGG + chr2_2:40357704-40357723 None:intergenic 40.0%
TTGAATGTAATGACATGCGC+CGG + chr2_2:40357740-40357759 None:intergenic 40.0%
AGGTCATATCCTATGAAGCA+CGG + chr2_2:40357826-40357845 None:intergenic 40.0%
!!! GGCTACTTTTACACACTATC+GGG - chr2_2:40357908-40357927 Msa0251150:intron 40.0%
CTGGAGTTTCAATGGCAATT+GGG - chr2_2:40358174-40358193 Msa0251150:intron 40.0%
ATCAAGGCTCTTATTCAAGC+TGG - chr2_2:40358248-40358267 Msa0251150:intron 40.0%
! CATACAGAAGAGTGTGATGA+TGG + chr2_2:40358281-40358300 None:intergenic 40.0%
! TTCTTTTGGATAGGCAACAG+TGG - chr2_2:40358397-40358416 Msa0251150:intron 40.0%
CACAACTGCAAGACCAAAAA+TGG + chr2_2:40358587-40358606 None:intergenic 40.0%
GCACATCAAAAGACTGATAC+GGG + chr2_2:40358689-40358708 None:intergenic 40.0%
GGCACATCAAAAGACTGATA+CGG + chr2_2:40358690-40358709 None:intergenic 40.0%
GGAATCCTAGCATAGTCAAA+AGG + chr2_2:40358712-40358731 None:intergenic 40.0%
GTGGGAAAGAAATGGTTGTA+CGG - chr2_2:40359191-40359210 Msa0251150:intron 40.0%
ATGTTGACGACCCTAACTAA+TGG - chr2_2:40359255-40359274 Msa0251150:intron 40.0%
GGTGCCAAATGACATAAAGA+TGG - chr2_2:40359319-40359338 Msa0251150:intron 40.0%
CAGGCCATCTTTATGTCATT+TGG + chr2_2:40359326-40359345 None:intergenic 40.0%
ACTTCTTTATCTGAGGACTC+AGG + chr2_2:40359345-40359364 None:intergenic 40.0%
ATTGTTTCAGGCTGCTCAAT+AGG + chr2_2:40359509-40359528 None:intergenic 40.0%
GTCATATCCTGTATACGTAG+AGG - chr2_2:40359555-40359574 Msa0251150:intron 40.0%
GTCAGAGTGAGGATAATTAC+AGG + chr2_2:40359726-40359745 None:intergenic 40.0%
! GACAATGTTTTGTCAGAGTG+AGG + chr2_2:40359737-40359756 None:intergenic 40.0%
GATACGCTCAAAATGGCTTA+TGG + chr2_2:40359934-40359953 None:intergenic 40.0%
TAGAATCGTGAGTATGATGG+TGG - chr2_2:40360036-40360055 Msa0251150:intron 40.0%
TGCCGTTAAGGTTGTATTCT+TGG - chr2_2:40360113-40360132 Msa0251150:intron 40.0%
GCCGTTAAGGTTGTATTCTT+GGG - chr2_2:40360114-40360133 Msa0251150:intron 40.0%
CCAAGAAAATTCCCCAATTC+GGG - chr2_2:40360183-40360202 Msa0251150:CDS 40.0%
! TTTTGCGGAAAACCCGAATT+GGG + chr2_2:40360198-40360217 None:intergenic 40.0%
! TTTTTGCGGAAAACCCGAAT+TGG + chr2_2:40360199-40360218 None:intergenic 40.0%
! TTTTTAATGCTCACTGGTGC+GGG - chr2_2:40360236-40360255 Msa0251150:intron 40.0%
! TTCTTCTGTTACTTGTGCTG+TGG - chr2_2:40360421-40360440 Msa0251150:intron 40.0%
! TCTTCTGTTACTTGTGCTGT+GGG - chr2_2:40360422-40360441 Msa0251150:intron 40.0%
! GACTGATTTCTGTGATTTGC+AGG - chr2_2:40360896-40360915 Msa0251150:intron 40.0%
AGGGTGTAAGAAGAGAAGTA+GGG - chr2_2:40360916-40360935 Msa0251150:intron 40.0%
GTACATGGTTGACATCCATT+TGG + chr2_2:40360974-40360993 None:intergenic 40.0%
!! AGTTTCTGCTTTTGGTGGAT+TGG + chr2_2:40361042-40361061 None:intergenic 40.0%
!! TCTTGAGTTTCTGCTTTTGG+TGG + chr2_2:40361047-40361066 None:intergenic 40.0%
GTTCCAAGAAACCACTTCTT+TGG - chr2_2:40361079-40361098 Msa0251150:intron 40.0%
GTTCCAAAGAAGTGGTTTCT+TGG + chr2_2:40361085-40361104 None:intergenic 40.0%
TTGTTGTGGTTCCAAAGAAG+TGG + chr2_2:40361093-40361112 None:intergenic 40.0%
AGAAACTGTTGGTCATACTG+AGG - chr2_2:40361244-40361263 Msa0251150:CDS 40.0%
ATTTCTTCTCTTGCTGCTGC+TGG - chr2_2:40357516-40357535 Msa0251150:CDS 45.0%
! GACACTTTTGATCAAAGGCG+TGG - chr2_2:40357703-40357722 Msa0251150:CDS 45.0%
ACAGACACATAACACAACCC+GGG + chr2_2:40357801-40357820 None:intergenic 45.0%
CACAGACACATAACACAACC+CGG + chr2_2:40357802-40357821 None:intergenic 45.0%
ACACGCCATATGTTTAGTCG+TGG - chr2_2:40357942-40357961 Msa0251150:intron 45.0%
CACGCCATATGTTTAGTCGT+GGG - chr2_2:40357943-40357962 Msa0251150:intron 45.0%
AGTGTGTTGAGAGTCCACAT+TGG - chr2_2:40357973-40357992 Msa0251150:intron 45.0%
GATTGCAGCTGGAGTTTCAA+TGG - chr2_2:40358166-40358185 Msa0251150:intron 45.0%
GCTGGAGTTTCAATGGCAAT+TGG - chr2_2:40358173-40358192 Msa0251150:intron 45.0%
AAGGCTCTTATTCAAGCTGG+AGG - chr2_2:40358251-40358270 Msa0251150:intron 45.0%
AGGCTCTTATTCAAGCTGGA+GGG - chr2_2:40358252-40358271 Msa0251150:intron 45.0%
! GTGGCTTGTGCAACATTACT+TGG - chr2_2:40358416-40358435 Msa0251150:intron 45.0%
!! CAACATTACTTGGCCTTGAG+AGG - chr2_2:40358426-40358445 Msa0251150:intron 45.0%
GACCAAAAATGGGATCTGAC+AGG + chr2_2:40358576-40358595 None:intergenic 45.0%
!! TGTGCCCTTTTGACTATGCT+AGG - chr2_2:40358704-40358723 Msa0251150:intron 45.0%
! ATGTCACTTAGGGTTGCAAG+TGG - chr2_2:40359172-40359191 Msa0251150:intron 45.0%
! TGTCACTTAGGGTTGCAAGT+GGG - chr2_2:40359173-40359192 Msa0251150:intron 45.0%
GGTTGCAAGTGGGAAAGAAA+TGG - chr2_2:40359183-40359202 Msa0251150:intron 45.0%
!! CTATCCTGCCACTGATTCAA+CGG + chr2_2:40360142-40360161 None:intergenic 45.0%
! CCCGAATTGGGGAATTTTCT+TGG + chr2_2:40360186-40360205 None:intergenic 45.0%
TTTGCGGAAAACCCGAATTG+GGG + chr2_2:40360197-40360216 None:intergenic 45.0%
AAACAGAGAAACACGCTCAG+TGG + chr2_2:40360348-40360367 None:intergenic 45.0%
AAGAACTAGCACAGCAACAG+TGG + chr2_2:40360406-40360425 None:intergenic 45.0%
!! GATTGTTTTGTGGGCCTGTT+TGG - chr2_2:40360862-40360881 Msa0251150:intron 45.0%
GTCTTCATTGTAGGCCAAAC+AGG + chr2_2:40360879-40360898 None:intergenic 45.0%
CAGGGTGTAAGAAGAGAAGT+AGG - chr2_2:40360915-40360934 Msa0251150:intron 45.0%
GGTCTGATAAACTCTCAACC+TGG - chr2_2:40361011-40361030 Msa0251150:intron 45.0%
!! TTTGGTGGATTGGATGATCC+AGG + chr2_2:40361032-40361051 None:intergenic 45.0%
! ACCTCAAAGTTGGTTGCTGA+TGG - chr2_2:40361206-40361225 Msa0251150:intron 45.0%
ACCATCAGCAACCAACTTTG+AGG + chr2_2:40361210-40361229 None:intergenic 45.0%
TGGTCATACTGAGGTTGAAG+TGG - chr2_2:40361253-40361272 Msa0251150:CDS 45.0%
!!! ACTTGGATTTTTGGTTGGGC+TGG - chr2_2:40361289-40361308 Msa0251150:CDS 45.0%
!!! TTCTTTTTAATTTTAAAAAT+GGG + chr2_2:40360275-40360294 None:intergenic 5.0%
!!! TTTCTTTTTAATTTTAAAAA+TGG + chr2_2:40360276-40360295 None:intergenic 5.0%
!!! TTTTAAAATTAAAAAGAAAA+TGG - chr2_2:40360277-40360296 Msa0251150:intron 5.0%
AGGCGTGGCCATTATATGAC+CGG - chr2_2:40357718-40357737 Msa0251150:CDS 50.0%
! GACATGCGCCGGTCATATAA+TGG + chr2_2:40357729-40357748 None:intergenic 50.0%
TGTCTGTGTCCGTGCTTCAT+AGG - chr2_2:40357814-40357833 Msa0251150:CDS 50.0%
CACGCCCACGACTAAACATA+TGG + chr2_2:40357950-40357969 None:intergenic 50.0%
! GCTTAGGTTCTGATTGCAGC+TGG - chr2_2:40358155-40358174 Msa0251150:intron 50.0%
! GGCCTGTCAGATCCCATTTT+TGG - chr2_2:40358571-40358590 Msa0251150:intron 50.0%
GGTCTTGCAGTTGTGTATGC+TGG - chr2_2:40358592-40358611 Msa0251150:intron 50.0%
CCAGATGCAGATCTATCTGC+AGG + chr2_2:40359402-40359421 None:intergenic 50.0%
CCTGCAGATAGATCTGCATC+TGG - chr2_2:40359399-40359418 Msa0251150:intron 50.0%
CTTGGGATCCGTTGAATCAG+TGG - chr2_2:40360131-40360150 Msa0251150:intron 50.0%
TCGAGAGTCTGCGCAAGATT+GGG + chr2_2:40360699-40360718 None:intergenic 50.0%
ATCGAGAGTCTGCGCAAGAT+TGG + chr2_2:40360700-40360719 None:intergenic 50.0%
ACTGAGGTTGAAGTGGTAGC+TGG - chr2_2:40361260-40361279 Msa0251150:CDS 50.0%
GTGGTAGCTGGTGGTTTACT+TGG - chr2_2:40361272-40361291 Msa0251150:CDS 50.0%
! TCTGTGCTGCAGTGCCGTTA+AGG - chr2_2:40360101-40360120 Msa0251150:intron 55.0%
GGATCCGTTGAATCAGTGGC+AGG - chr2_2:40360135-40360154 Msa0251150:intron 55.0%
CCTCGGTGAAACACTCTCAG+TGG + chr2_2:40360381-40360400 None:intergenic 55.0%
!! CCACTGAGAGTGTTTCACCG+AGG - chr2_2:40360378-40360397 Msa0251150:intron 55.0%
AGTCTGCGCAAGATTGGGAG+TGG + chr2_2:40360694-40360713 None:intergenic 55.0%
GAGGTTGAAGTGGTAGCTGG+TGG - chr2_2:40361263-40361282 Msa0251150:CDS 55.0%
GCACAGCAACAGTGGCGCCT+CGG + chr2_2:40360398-40360417 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 40357257 40361544 40357257 ID=Msa0251150;Name=Msa0251150
chr2_2 mRNA 40357257 40361544 40357257 ID=Msa0251150-mRNA-1;Parent=Msa0251150;Name=Msa0251150-mRNA-1;_AED=0.10;_eAED=0.10;_QI=121|1|1|1|1|1|5|213|283
chr2_2 exon 40357257 40357883 40357257 ID=Msa0251150-mRNA-1:exon:12621;Parent=Msa0251150-mRNA-1
chr2_2 exon 40360165 40360231 40360165 ID=Msa0251150-mRNA-1:exon:12620;Parent=Msa0251150-mRNA-1
chr2_2 exon 40360354 40360391 40360354 ID=Msa0251150-mRNA-1:exon:12619;Parent=Msa0251150-mRNA-1
chr2_2 exon 40360506 40360640 40360506 ID=Msa0251150-mRNA-1:exon:12618;Parent=Msa0251150-mRNA-1
chr2_2 exon 40361226 40361544 40361226 ID=Msa0251150-mRNA-1:exon:12617;Parent=Msa0251150-mRNA-1
chr2_2 five_prime_UTR 40361424 40361544 40361424 ID=Msa0251150-mRNA-1:five_prime_utr;Parent=Msa0251150-mRNA-1
chr2_2 CDS 40361226 40361423 40361226 ID=Msa0251150-mRNA-1:cds;Parent=Msa0251150-mRNA-1
chr2_2 CDS 40360506 40360640 40360506 ID=Msa0251150-mRNA-1:cds;Parent=Msa0251150-mRNA-1
chr2_2 CDS 40360354 40360391 40360354 ID=Msa0251150-mRNA-1:cds;Parent=Msa0251150-mRNA-1
chr2_2 CDS 40360165 40360231 40360165 ID=Msa0251150-mRNA-1:cds;Parent=Msa0251150-mRNA-1
chr2_2 CDS 40357470 40357883 40357470 ID=Msa0251150-mRNA-1:cds;Parent=Msa0251150-mRNA-1
chr2_2 three_prime_UTR 40357257 40357469 40357257 ID=Msa0251150-mRNA-1:three_prime_utr;Parent=Msa0251150-mRNA-1
Gene Sequence

>Msa0251150

ATGATGTTGTTGCAACAATCAAATTTCTGTCTCATTCCTTCTTCTCAATTTCCCTCACTCAAACAAAGAAATCCATTTCTTCATCATCAACAATTTCCATTCAGTTTTCGTAGAAAGGATAAAGCTTCTACCTTTAGAATTTCTTCTCTTGCTGCTGCTGGTTTTTTCAATGATGTCGCTCAAATTGCTCATAACAAGGTTCTGATTGCAGCTGGAGTTTCAATGGCAATTGGGCAACTTTCTAAGCCATTTACTTCTGTGTTTCTGTATGGCAAAGAGTTTGATATCAAGGCTCTTATTCAAGCTGGAGGGTTCCCATCATCACACTCTTCTGCAACAGTGGCTTGTGCAACATTACTTGGCCTTGAGAGAGGCCTGTCAGATCCCATTTTTGGTCTTGCAGTTGTGTATGCTGGTCTGATTATGTATGATGCTCAGGGTGTAAGAAGAGAAGTAGGGATTCATGCTAAGACAATCAACAAACTACTTCTCCAAATGGATGTCAACCATGTACATTCCAAATATAAAGAGGGTCTGATAAACTCTCAACCTGGATCATCCAATCCACCAAAAGCAGAAACTCAAGAAAAATCCCTTTTGTTCCAAGAAACCACTTCTTTGGAACCACAACAAGCTAATACAAATGTATTAGTTAAATCAGGAAGCATAATAAGGCAAAGTGACGAAGAGCTACAATCCTCTGATTTCTTAGAAGATGCAAAAGAAACCTCAAAGTTGGTTGCTGATGGTTTACTGCCATTAAAAGAAACTGTTGGTCATACTGAGGTTGAAGTGGTAGCTGGTGGTTTACTTGGATTTTTGGTTGGGCTGGCTGTGTATAATTTGAAGTAA

Protein sequence

>Msa0251150

MMLLQQSNFCLIPSSQFPSLKQRNPFLHHQQFPFSFRRKDKASTFRISSLAAAGFFNDVAQIAHNKVLIAAGVSMAIGQLSKPFTSVFLYGKEFDIKALIQAGGFPSSHSSATVACATLLGLERGLSDPIFGLAVVYAGLIMYDAQGVRREVGIHAKTINKLLLQMDVNHVHSKYKEGLINSQPGSSNPPKAETQEKSLLFQETTSLEPQQANTNVLVKSGSIIRQSDEELQSSDFLEDAKETSKLVADGLLPLKETVGHTEVEVVAGGLLGFLVGLAVYNLK*