AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005160 MtrunA17_Chr1g0151581 94.500 200 3 1 1 192 53 252 3.87e-137 383
Msa0005160 MtrunA17_Chr5g0401491 41.379 174 87 3 3 162 71 243 2.13e-35 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005160 AT5G11840.1 66.176 204 49 4 1 188 61 260 3.11e-92 270
Msa0005160 AT5G11840.3 73.485 132 27 1 1 124 61 192 3.56e-69 209
Msa0005160 AT5G11840.4 73.282 131 27 1 1 123 61 191 2.10e-68 207
Msa0005160 AT5G11840.2 68.696 115 28 1 1 107 61 175 2.64e-55 174
Msa0005160 AT5G67370.1 42.949 156 80 2 3 150 86 240 2.26e-34 124

Find 61 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACGACTGGTACTCGTTTA+TGG 0.126473 1_1:+7627447 None:intergenic
GCTGGTGATGTTGTTGAATA+TGG 0.283210 1_1:-7627397 Msa0005160:CDS
TGGCTTGGTTTGGAACTGTT+GGG 0.311583 1_1:-7627321 Msa0005160:CDS
TGCTGCTTCTAGTGGTGTTT+TGG 0.320044 1_1:-7627266 Msa0005160:CDS
GGTGAAGACTGCTGAGGTTT+TGG 0.325730 1_1:-7625620 Msa0005160:CDS
GGGTTACCTGTGGCTTGGTT+TGG 0.356647 1_1:-7627331 Msa0005160:CDS
AACGACTGGTACTCGTTTAT+GGG 0.360388 1_1:+7627448 None:intergenic
TCTAGGATGGGATACTTCTT+AGG 0.373021 1_1:+7624348 None:intergenic
GTGGCTTGGTTTGGAACTGT+TGG 0.374589 1_1:-7627322 Msa0005160:CDS
TTGTTAGGATGTATCTTGGT+TGG 0.396546 1_1:-7627228 Msa0005160:CDS
GGTATTAATGTGGAGGGAAA+GGG 0.424446 1_1:-7624313 Msa0005160:three_prime_UTR
TGTTAGGATGTATCTTGGTT+GGG 0.425759 1_1:-7627227 Msa0005160:CDS
GCGGTTGTTAGGATGTATCT+TGG 0.430246 1_1:-7627232 Msa0005160:CDS
GGCTGCTGTTCTAACGGAAC+AGG 0.440485 1_1:+7627469 None:intergenic
ATCTTGGTTGGGCTTATGTT+GGG 0.441526 1_1:-7627216 Msa0005160:CDS
ATGTTGTTGAATATGGTTCC+CGG 0.443228 1_1:-7627390 Msa0005160:CDS
TTGGCACGTGATAGACTCTT+GGG 0.445944 1_1:-7625601 Msa0005160:CDS
CACCAGCAGCCCATGAAAAC+GGG 0.453557 1_1:+7627413 None:intergenic
AGTCGGTCTGGCAGCATGCT+TGG 0.454960 1_1:-7624536 Msa0005160:CDS
TTTGGCACGTGATAGACTCT+TGG 0.457104 1_1:-7625602 Msa0005160:CDS
TATTTAACATCGAGAGAAAC+CGG 0.458605 1_1:-7624475 Msa0005160:CDS
TCACCAGCAGCCCATGAAAA+CGG 0.464675 1_1:+7627412 None:intergenic
TCCAGGTATTGCTCGAACTC+CGG 0.467416 1_1:+7624456 None:intergenic
TATATTGCAGATGAGGAGAC+AGG 0.467504 1_1:-7626284 Msa0005160:intron
ATGTACTATTCTTCAAGATC+AGG 0.468774 1_1:+7624379 None:intergenic
TATCTTGGTTGGGCTTATGT+TGG 0.471423 1_1:-7627217 Msa0005160:CDS
TGGTATTAATGTGGAGGGAA+AGG 0.473092 1_1:-7624314 Msa0005160:three_prime_UTR
GGCTCACCACAAAATGCATC+TGG 0.473478 1_1:+7624400 None:intergenic
GACAGGGTGGTATGATGGCC+AGG 0.475845 1_1:-7626267 Msa0005160:intron
ATACCATGCATGGAGGATCT+AGG 0.480459 1_1:+7624331 None:intergenic
TTGTGGGGTTACCTGTGGCT+TGG 0.484321 1_1:-7627336 Msa0005160:CDS
GAAAATCACTCTAGTCGGTC+TGG 0.491715 1_1:-7624548 Msa0005160:CDS
GTGAAATGCTACTACATGTA+TGG 0.492083 1_1:+7624231 None:intergenic
TTTCCTTTGCCTTGCTTGTG+GGG 0.493230 1_1:-7627351 Msa0005160:CDS
ACCGGAGTTCGAGCAATACC+TGG 0.506149 1_1:-7624457 Msa0005160:CDS
GGCTTGGTTTGGAACTGTTG+GGG 0.506638 1_1:-7627320 Msa0005160:CDS
GCACAAACAATTCTCTTAGC+AGG 0.508243 1_1:+7627286 None:intergenic
GAGGAGACAGGGTGGTATGA+TGG 0.516290 1_1:-7626272 Msa0005160:CDS
ATTGTTTGTGCTGCTTCTAG+TGG 0.521546 1_1:-7627274 Msa0005160:CDS
GATTCATCATTGTAAGCTCC+AGG 0.524014 1_1:+7624439 None:intergenic
TTTATGGGCTGCTGTTCTAA+CGG 0.540735 1_1:+7627463 None:intergenic
CTCCACATTAATACCATGCA+TGG 0.543181 1_1:+7624321 None:intergenic
GTATTAATGTGGAGGGAAAG+GGG 0.552360 1_1:-7624312 Msa0005160:three_prime_UTR
TAACCCCACAAGCAAGGCAA+AGG 0.556717 1_1:+7627348 None:intergenic
CTTGCTTGTGGGGTTACCTG+TGG 0.557353 1_1:-7627341 Msa0005160:CDS
TGTATGGTAAGACTAAGAAA+AGG 0.568203 1_1:+7624247 None:intergenic
CACAGGTAACCCCACAAGCA+AGG 0.573824 1_1:+7627342 None:intergenic
TTCAAGGTTAAGCCTGTACT+CGG 0.578638 1_1:-7624577 Msa0005160:intron
CTCCATGCATGGTATTAATG+TGG 0.580181 1_1:-7624323 Msa0005160:three_prime_UTR
CATGCATGGAGGATCTAGGA+TGG 0.585585 1_1:+7624335 None:intergenic
GGAACGACGTCGATAACGAC+TGG 0.595019 1_1:+7627434 None:intergenic
AGATTGAAAATCACTCTAGT+CGG 0.609573 1_1:-7624553 Msa0005160:CDS
CATCCTAGATCCTCCATGCA+TGG 0.611902 1_1:-7624334 Msa0005160:three_prime_UTR
CATGCATGGTATTAATGTGG+AGG 0.616854 1_1:-7624320 Msa0005160:three_prime_UTR
ATGCATGGTATTAATGTGGA+GGG 0.620228 1_1:-7624319 Msa0005160:three_prime_UTR
ATGCATGGAGGATCTAGGAT+GGG 0.624436 1_1:+7624336 None:intergenic
ACAGTTCCAAACCAAGCCAC+AGG 0.624924 1_1:+7627325 None:intergenic
CACATTAATACCATGCATGG+AGG 0.657724 1_1:+7624324 None:intergenic
ATATTGCAGATGAGGAGACA+GGG 0.660822 1_1:-7626283 Msa0005160:intron
TTGCAGATGAGGAGACAGGG+TGG 0.732719 1_1:-7626280 Msa0005160:intron
GATATGGGTGAAGACTGCTG+AGG 0.749406 1_1:-7625626 Msa0005160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTACATATAAAATCT+TGG - chr1_1:7625443-7625462 Msa0005160:intron 10.0%
!!! GCAATAATTTTATAGTTAAA+CGG - chr1_1:7625210-7625229 Msa0005160:intron 15.0%
!!! TTGTTTATATGGAAGATTTT+TGG + chr1_1:7625008-7625027 None:intergenic 20.0%
!! AAAAATCTTCCATATAAACA+AGG - chr1_1:7625007-7625026 Msa0005160:intron 20.0%
!! TATCATATACGATTAATGTT+AGG - chr1_1:7625238-7625257 Msa0005160:intron 20.0%
!!! ATATTGTTAGTGTTATTCAA+TGG - chr1_1:7625316-7625335 Msa0005160:intron 20.0%
!! TTCATCTACATAAATTCATT+GGG + chr1_1:7625579-7625598 None:intergenic 20.0%
!! TTTCATCTACATAAATTCAT+TGG + chr1_1:7625580-7625599 None:intergenic 20.0%
!! ATTTATGTAGATGAAACTAA+CGG - chr1_1:7625584-7625603 Msa0005160:intron 20.0%
!!! TAATATTAATGTGTCGATTA+TGG + chr1_1:7625816-7625835 None:intergenic 20.0%
!! ATATCTGTAGAGAAATATTT+AGG + chr1_1:7626032-7626051 None:intergenic 20.0%
!! TAAATATTTCTCTACAGATA+TGG - chr1_1:7626031-7626050 Msa0005160:intron 20.0%
!! AAATATTTCTCTACAGATAT+GGG - chr1_1:7626032-7626051 Msa0005160:intron 20.0%
!!! TAAATAATTCCTGAATCTTT+TGG + chr1_1:7626316-7626335 None:intergenic 20.0%
!! GATCTTAAAGACTTAATATT+AGG + chr1_1:7626558-7626577 None:intergenic 20.0%
!! CATAAGGTTAAATTTAACAA+AGG + chr1_1:7626737-7626756 None:intergenic 20.0%
!! CTTTGTTAAATTTAACCTTA+TGG - chr1_1:7626735-7626754 Msa0005160:intron 20.0%
!! CAAAAACATAAATTTCCATA+AGG + chr1_1:7626753-7626772 None:intergenic 20.0%
!!! GAATATCAACAGATTTTAAA+AGG + chr1_1:7627003-7627022 None:intergenic 20.0%
! TTATCTATTACTTCCATGTA+TGG - chr1_1:7624540-7624559 Msa0005160:CDS 25.0%
! TGTATTTACTTCTCACTTAA+GGG + chr1_1:7624722-7624741 None:intergenic 25.0%
! TTGTATTTACTTCTCACTTA+AGG + chr1_1:7624723-7624742 None:intergenic 25.0%
! TTCATATCATTAACGTATCA+TGG + chr1_1:7625294-7625313 None:intergenic 25.0%
! ATAAAGAGAAAACAATTACC+TGG + chr1_1:7625427-7625446 None:intergenic 25.0%
!! TCTAAAGTCACATATATGAT+TGG - chr1_1:7625875-7625894 Msa0005160:intron 25.0%
!!! AACTTGTTTGTGTTTTACTA+AGG - chr1_1:7625951-7625970 Msa0005160:intron 25.0%
!! ACTTGTTTGTGTTTTACTAA+GGG - chr1_1:7625952-7625971 Msa0005160:intron 25.0%
!! TTTAAGACTATGTAAGTAGT+AGG - chr1_1:7626238-7626257 Msa0005160:intron 25.0%
! TTAAGACTATGTAAGTAGTA+GGG - chr1_1:7626239-7626258 Msa0005160:intron 25.0%
! TGACATATCACAAAATATAG+TGG + chr1_1:7626510-7626529 None:intergenic 25.0%
!! TACAAGATAATTTTCATCAC+AGG + chr1_1:7626781-7626800 None:intergenic 25.0%
! TTCAATTCATCCATTAATTG+AGG - chr1_1:7626934-7626953 Msa0005160:intron 25.0%
! ACTATACAATCCTCAATTAA+TGG + chr1_1:7626947-7626966 None:intergenic 25.0%
!! AAACTCTTTTGTAATGTTCA+AGG - chr1_1:7627080-7627099 Msa0005160:intron 25.0%
AGATACATTACATTCAACAG+TGG + chr1_1:7624499-7624518 None:intergenic 30.0%
!!! GCTATTTTGATAAACTATCG+TGG - chr1_1:7624629-7624648 Msa0005160:intron 30.0%
GTATTTACTTCTCACTTAAG+GGG + chr1_1:7624721-7624740 None:intergenic 30.0%
CAAAATCGAAGATCTTATGT+GGG - chr1_1:7624818-7624837 Msa0005160:intron 30.0%
TCCAAAATAAGAGTCAATGT+TGG + chr1_1:7624855-7624874 None:intergenic 30.0%
! CAATGGTGTTAAGAAATTTG+TGG - chr1_1:7625333-7625352 Msa0005160:intron 30.0%
GTGTTAAGAAATTTGTGGAA+GGG - chr1_1:7625338-7625357 Msa0005160:intron 30.0%
TTCTGGATTACTTGTTTACT+TGG - chr1_1:7625487-7625506 Msa0005160:intron 30.0%
TTGTGTTGAAATTTCTTCAC+CGG + chr1_1:7625534-7625553 None:intergenic 30.0%
!!! TCTCTTCATTTTGTTTTGGA+TGG - chr1_1:7625729-7625748 Msa0005160:intron 30.0%
!! ATTAATGTGTCGATTATGGA+TGG + chr1_1:7625812-7625831 None:intergenic 30.0%
TTGGTATGGAAATTACTACA+AGG + chr1_1:7626297-7626316 None:intergenic 30.0%
ATTTCCATACCAAAAGATTC+AGG - chr1_1:7626304-7626323 Msa0005160:intron 30.0%
! AATTCCTGAATCTTTTGGTA+TGG + chr1_1:7626311-7626330 None:intergenic 30.0%
ACAAATGTCGTACAAAATAG+AGG - chr1_1:7626448-7626467 Msa0005160:intron 30.0%
CTCACTTGTAGTAAAACATT+AGG - chr1_1:7626623-7626642 Msa0005160:intron 30.0%
AGTGCATAAACATATCAAGA+TGG + chr1_1:7626683-7626702 None:intergenic 30.0%
! ACGATTTTGTCAAATAGGAT+AGG + chr1_1:7626911-7626930 None:intergenic 30.0%
! AAACGACGATTTTGTCAAAT+AGG + chr1_1:7626916-7626935 None:intergenic 30.0%
AGATTGAAAATCACTCTAGT+CGG - chr1_1:7627120-7627139 Msa0005160:intron 30.0%
TATTTAACATCGAGAGAAAC+CGG - chr1_1:7627198-7627217 Msa0005160:intron 30.0%
ATGTACTATTCTTCAAGATC+AGG + chr1_1:7627297-7627316 None:intergenic 30.0%
TGTATGGTAAGACTAAGAAA+AGG + chr1_1:7627429-7627448 None:intergenic 30.0%
ATGTTGTTGAATATGGTTCC+CGG - chr1_1:7624283-7624302 Msa0005160:three_prime_UTR 35.0%
TTGTTAGGATGTATCTTGGT+TGG - chr1_1:7624445-7624464 Msa0005160:CDS 35.0%
TGTTAGGATGTATCTTGGTT+GGG - chr1_1:7624446-7624465 Msa0005160:CDS 35.0%
! CCACATAAGATCTTCGATTT+TGG + chr1_1:7624820-7624839 None:intergenic 35.0%
CCAAAATCGAAGATCTTATG+TGG - chr1_1:7624817-7624836 Msa0005160:intron 35.0%
!!! GCCAACATTGACTCTTATTT+TGG - chr1_1:7624851-7624870 Msa0005160:intron 35.0%
ATAAGTGCTAGTGTTACCAA+TGG - chr1_1:7624958-7624977 Msa0005160:intron 35.0%
!! ATCTGTCATGTTTTTGCCAT+AGG + chr1_1:7625042-7625061 None:intergenic 35.0%
TGATTGCATCAATGTGAGAA+TGG - chr1_1:7625186-7625205 Msa0005160:intron 35.0%
GGTGTTAAGAAATTTGTGGA+AGG - chr1_1:7625337-7625356 Msa0005160:intron 35.0%
CTCATCTGCAATATAAAGAG+AGG + chr1_1:7625384-7625403 None:intergenic 35.0%
CTCTCTTTATATTGCAGATG+AGG - chr1_1:7625382-7625401 Msa0005160:intron 35.0%
GGTTCATCTTTGTATGCTAT+TGG - chr1_1:7625464-7625483 Msa0005160:intron 35.0%
!! TCTTTGTATGCTATTGGTTC+TGG - chr1_1:7625470-7625489 Msa0005160:intron 35.0%
TGGATTACTTGTTTACTTGG+AGG - chr1_1:7625490-7625509 Msa0005160:intron 35.0%
TGTGTTGAAATTTCTTCACC+GGG + chr1_1:7625533-7625552 None:intergenic 35.0%
!!! CTTTATTTTCCACACACTTG+TGG + chr1_1:7625619-7625638 None:intergenic 35.0%
TAAACCAAATGACAGGACAA+GGG + chr1_1:7625686-7625705 None:intergenic 35.0%
!! GAGCTCTCTTCATTTTGTTT+TGG - chr1_1:7625725-7625744 Msa0005160:intron 35.0%
!! TGGTTGTGATTTGTTGATAC+TGG - chr1_1:7625895-7625914 Msa0005160:intron 35.0%
ACAGTAAATGCTATAGCTCT+TGG + chr1_1:7626179-7626198 None:intergenic 35.0%
ATGGAAATTACTACAAGGCA+TGG + chr1_1:7626292-7626311 None:intergenic 35.0%
TTGTACTAAATAGCTCATCG+TGG + chr1_1:7626432-7626451 None:intergenic 35.0%
AATATGACACCTTAGCATAG+CGG - chr1_1:7626472-7626491 Msa0005160:intron 35.0%
ACACTGCAAGTTTCAAATTG+TGG + chr1_1:7626829-7626848 None:intergenic 35.0%
! ATTTTCAATCTACCGAGTAC+AGG + chr1_1:7627111-7627130 None:intergenic 35.0%
! TTTGAACCAGATGCATTTTG+TGG - chr1_1:7627267-7627286 Msa0005160:CDS 35.0%
ATGCATGGTATTAATGTGGA+GGG - chr1_1:7627354-7627373 Msa0005160:CDS 35.0%
GTGAAATGCTACTACATGTA+TGG + chr1_1:7627445-7627464 None:intergenic 35.0%
! TTTATGGGCTGCTGTTCTAA+CGG + chr1_1:7624213-7624232 None:intergenic 40.0%
AACGACTGGTACTCGTTTAT+GGG + chr1_1:7624228-7624247 None:intergenic 40.0%
TAACGACTGGTACTCGTTTA+TGG + chr1_1:7624229-7624248 None:intergenic 40.0%
! GCTGGTGATGTTGTTGAATA+TGG - chr1_1:7624276-7624295 Msa0005160:three_prime_UTR 40.0%
AAAAGCCCACAACAAAAAGC+CGG + chr1_1:7624305-7624324 None:intergenic 40.0%
! TTTTCCTTTGCCTTGCTTGT+GGG - chr1_1:7624321-7624340 Msa0005160:three_prime_UTR 40.0%
GCACAAACAATTCTCTTAGC+AGG + chr1_1:7624390-7624409 None:intergenic 40.0%
!! ATTGTTTGTGCTGCTTCTAG+TGG - chr1_1:7624399-7624418 Msa0005160:CDS 40.0%
!!! TGTTTTGGCGGTTACTTTTG+CGG - chr1_1:7624422-7624441 Msa0005160:CDS 40.0%
TATCTTGGTTGGGCTTATGT+TGG - chr1_1:7624456-7624475 Msa0005160:CDS 40.0%
ATCTTGGTTGGGCTTATGTT+GGG - chr1_1:7624457-7624476 Msa0005160:CDS 40.0%
TTGTGCTCTTTCTCCATACA+TGG + chr1_1:7624556-7624575 None:intergenic 40.0%
GTCATTGTTGCAGTCTATAG+CGG - chr1_1:7625065-7625084 Msa0005160:intron 40.0%
! GTGTCGACAAATTTCCATCA+TGG + chr1_1:7625119-7625138 None:intergenic 40.0%
TATATTGCAGATGAGGAGAC+AGG - chr1_1:7625389-7625408 Msa0005160:intron 40.0%
ATATTGCAGATGAGGAGACA+GGG - chr1_1:7625390-7625409 Msa0005160:intron 40.0%
! GTTCTAAGTTCTCAAAGTCC+CGG - chr1_1:7625512-7625531 Msa0005160:intron 40.0%
! TATTTTCCACACACTTGTGG+CGG + chr1_1:7625616-7625635 None:intergenic 40.0%
ATTACCCTTGTCCTGTCATT+TGG - chr1_1:7625679-7625698 Msa0005160:intron 40.0%
CTAAACCAAATGACAGGACA+AGG + chr1_1:7625687-7625706 None:intergenic 40.0%
! CTTGTCCTGTCATTTGGTTT+AGG - chr1_1:7625685-7625704 Msa0005160:intron 40.0%
TTGCACCTAAACCAAATGAC+AGG + chr1_1:7625693-7625712 None:intergenic 40.0%
GTTCAAATTCCGCTATGCTA+AGG + chr1_1:7626484-7626503 None:intergenic 40.0%
! CACTTTTACTTGTGTCTGTG+AGG - chr1_1:7626864-7626883 Msa0005160:intron 40.0%
TTCAAGGTTAAGCCTGTACT+CGG - chr1_1:7627096-7627115 Msa0005160:intron 40.0%
GATTCATCATTGTAAGCTCC+AGG + chr1_1:7627237-7627256 None:intergenic 40.0%
! TCTAGGATGGGATACTTCTT+AGG + chr1_1:7627328-7627347 None:intergenic 40.0%
CACATTAATACCATGCATGG+AGG + chr1_1:7627352-7627371 None:intergenic 40.0%
CTCCATGCATGGTATTAATG+TGG - chr1_1:7627350-7627369 Msa0005160:CDS 40.0%
CTCCACATTAATACCATGCA+TGG + chr1_1:7627355-7627374 None:intergenic 40.0%
CATGCATGGTATTAATGTGG+AGG - chr1_1:7627353-7627372 Msa0005160:CDS 40.0%
TGGTATTAATGTGGAGGGAA+AGG - chr1_1:7627359-7627378 Msa0005160:CDS 40.0%
GGTATTAATGTGGAGGGAAA+GGG - chr1_1:7627360-7627379 Msa0005160:CDS 40.0%
GTATTAATGTGGAGGGAAAG+GGG - chr1_1:7627361-7627380 Msa0005160:CDS 40.0%
AAAGCCCACAACAAAAAGCC+GGG + chr1_1:7624304-7624323 None:intergenic 45.0%
! CTTTTCCTTTGCCTTGCTTG+TGG - chr1_1:7624320-7624339 Msa0005160:three_prime_UTR 45.0%
TTTCCTTTGCCTTGCTTGTG+GGG - chr1_1:7624322-7624341 Msa0005160:three_prime_UTR 45.0%
!! TGGCTTGGTTTGGAACTGTT+GGG - chr1_1:7624352-7624371 Msa0005160:three_prime_UTR 45.0%
!! TGCTGCTTCTAGTGGTGTTT+TGG - chr1_1:7624407-7624426 Msa0005160:CDS 45.0%
!! TGCTTCTAGTGGTGTTTTGG+CGG - chr1_1:7624410-7624429 Msa0005160:CDS 45.0%
!!! CGGTTACTTTTGCGGTTGTT+AGG - chr1_1:7624430-7624449 Msa0005160:CDS 45.0%
GCGGTTGTTAGGATGTATCT+TGG - chr1_1:7624441-7624460 Msa0005160:CDS 45.0%
AGTGCTAGTGTTACCAATGG+TGG - chr1_1:7624961-7624980 Msa0005160:intron 45.0%
!! GTGTTACCAATGGTGGATGA+TGG - chr1_1:7624968-7624987 Msa0005160:intron 45.0%
!! ATGTTTTTGCCATAGGCCCA+CGG + chr1_1:7625035-7625054 None:intergenic 45.0%
GACAGGACAAGGGTAATATC+TGG + chr1_1:7625676-7625695 None:intergenic 45.0%
TTTGGCACGTGATAGACTCT+TGG - chr1_1:7626071-7626090 Msa0005160:intron 45.0%
TTGGCACGTGATAGACTCTT+GGG - chr1_1:7626072-7626091 Msa0005160:intron 45.0%
CACGGGTCATCATCAAAACA+TGG + chr1_1:7626356-7626375 None:intergenic 45.0%
CTTGTGTCTGTGAGGAATTG+CGG - chr1_1:7626872-7626891 Msa0005160:intron 45.0%
GAAAATCACTCTAGTCGGTC+TGG - chr1_1:7627125-7627144 Msa0005160:intron 45.0%
! ATGCATGGAGGATCTAGGAT+GGG + chr1_1:7627340-7627359 None:intergenic 45.0%
ATACCATGCATGGAGGATCT+AGG + chr1_1:7627345-7627364 None:intergenic 45.0%
! GACGTCGTTCCCGTTTTCAT+GGG - chr1_1:7624251-7624270 Msa0005160:three_prime_UTR 50.0%
TCACCAGCAGCCCATGAAAA+CGG + chr1_1:7624264-7624283 None:intergenic 50.0%
! TGGTTCCCGGCTTTTTGTTG+TGG - chr1_1:7624296-7624315 Msa0005160:three_prime_UTR 50.0%
!! GGTTCCCGGCTTTTTGTTGT+GGG - chr1_1:7624297-7624316 Msa0005160:three_prime_UTR 50.0%
TAACCCCACAAGCAAGGCAA+AGG + chr1_1:7624328-7624347 None:intergenic 50.0%
ACAGTTCCAAACCAAGCCAC+AGG + chr1_1:7624351-7624370 None:intergenic 50.0%
!! GTGGCTTGGTTTGGAACTGT+TGG - chr1_1:7624351-7624370 Msa0005160:three_prime_UTR 50.0%
!! GGCTTGGTTTGGAACTGTTG+GGG - chr1_1:7624353-7624372 Msa0005160:three_prime_UTR 50.0%
CAGAGTCCATCATCCACCAT+TGG + chr1_1:7624977-7624996 None:intergenic 50.0%
!! CAATGGTGGATGATGGACTC+TGG - chr1_1:7624975-7624994 Msa0005160:intron 50.0%
!! TCCATATAAACAAGGCGCCG+TGG - chr1_1:7625015-7625034 Msa0005160:intron 50.0%
!! CCATATAAACAAGGCGCCGT+GGG - chr1_1:7625016-7625035 Msa0005160:intron 50.0%
TCCATCATGGCGTCATGACA+TGG + chr1_1:7625106-7625125 None:intergenic 50.0%
GATATGGGTGAAGACTGCTG+AGG - chr1_1:7626047-7626066 Msa0005160:intron 50.0%
! GGTGAAGACTGCTGAGGTTT+TGG - chr1_1:7626053-7626072 Msa0005160:intron 50.0%
TGACCCGTGCTGTCAAATAG+CGG - chr1_1:7626367-7626386 Msa0005160:intron 50.0%
! AGTGCCGCTATTTGACAGCA+CGG + chr1_1:7626374-7626393 None:intergenic 50.0%
! TCCAGGTATTGCTCGAACTC+CGG + chr1_1:7627220-7627239 None:intergenic 50.0%
GGCTCACCACAAAATGCATC+TGG + chr1_1:7627276-7627295 None:intergenic 50.0%
CATGCATGGAGGATCTAGGA+TGG + chr1_1:7627341-7627360 None:intergenic 50.0%
CATCCTAGATCCTCCATGCA+TGG - chr1_1:7627339-7627358 Msa0005160:CDS 50.0%
GGCTGCTGTTCTAACGGAAC+AGG + chr1_1:7624207-7624226 None:intergenic 55.0%
GGAACGACGTCGATAACGAC+TGG + chr1_1:7624242-7624261 None:intergenic 55.0%
! CGACGTCGTTCCCGTTTTCA+TGG - chr1_1:7624250-7624269 Msa0005160:three_prime_UTR 55.0%
!! TTCCCGTTTTCATGGGCTGC+TGG - chr1_1:7624258-7624277 Msa0005160:three_prime_UTR 55.0%
CACCAGCAGCCCATGAAAAC+GGG + chr1_1:7624263-7624282 None:intergenic 55.0%
CACAGGTAACCCCACAAGCA+AGG + chr1_1:7624334-7624353 None:intergenic 55.0%
CTTGCTTGTGGGGTTACCTG+TGG - chr1_1:7624332-7624351 Msa0005160:three_prime_UTR 55.0%
TTGTGGGGTTACCTGTGGCT+TGG - chr1_1:7624337-7624356 Msa0005160:three_prime_UTR 55.0%
!! GGGTTACCTGTGGCTTGGTT+TGG - chr1_1:7624342-7624361 Msa0005160:three_prime_UTR 55.0%
!! TGGTGGATGATGGACTCTGG+AGG - chr1_1:7624978-7624997 Msa0005160:intron 55.0%
!! CCCACGGCGCCTTGTTTATA+TGG + chr1_1:7625019-7625038 None:intergenic 55.0%
GCCATGTCATGACGCCATGA+TGG - chr1_1:7625102-7625121 Msa0005160:intron 55.0%
TTGCAGATGAGGAGACAGGG+TGG - chr1_1:7625393-7625412 Msa0005160:intron 55.0%
GAGGAGACAGGGTGGTATGA+TGG - chr1_1:7625401-7625420 Msa0005160:intron 55.0%
! GTGCCGCTATTTGACAGCAC+GGG + chr1_1:7626373-7626392 None:intergenic 55.0%
ACCGGAGTTCGAGCAATACC+TGG - chr1_1:7627216-7627235 Msa0005160:CDS 55.0%
GACAGGGTGGTATGATGGCC+AGG - chr1_1:7625406-7625425 Msa0005160:intron 60.0%
TGCAGTCCGCCACAAGTGTG+TGG - chr1_1:7625607-7625626 Msa0005160:CDS 60.0%
AGTCGGTCTGGCAGCATGCT+TGG - chr1_1:7627137-7627156 Msa0005160:intron 60.0%
!! AACAAGGCGCCGTGGGCCTA+TGG - chr1_1:7625023-7625042 Msa0005160:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7624201 7627494 7624201 ID=Msa0005160;Name=Msa0005160
chr1_1 mRNA 7624201 7627494 7624201 ID=Msa0005160-mRNA-1;Parent=Msa0005160;Name=Msa0005160-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.66|0.75|1|1|0.75|4|183|192
chr1_1 exon 7624201 7624593 7624201 ID=Msa0005160-mRNA-1:exon:2745;Parent=Msa0005160-mRNA-1
chr1_1 exon 7625591 7625647 7625591 ID=Msa0005160-mRNA-1:exon:2744;Parent=Msa0005160-mRNA-1
chr1_1 exon 7626268 7626296 7626268 ID=Msa0005160-mRNA-1:exon:2743;Parent=Msa0005160-mRNA-1
chr1_1 exon 7627212 7627494 7627212 ID=Msa0005160-mRNA-1:exon:2742;Parent=Msa0005160-mRNA-1
chr1_1 CDS 7627212 7627494 7627212 ID=Msa0005160-mRNA-1:cds;Parent=Msa0005160-mRNA-1
chr1_1 CDS 7626268 7626296 7626268 ID=Msa0005160-mRNA-1:cds;Parent=Msa0005160-mRNA-1
chr1_1 CDS 7625591 7625647 7625591 ID=Msa0005160-mRNA-1:cds;Parent=Msa0005160-mRNA-1
chr1_1 CDS 7624384 7624593 7624384 ID=Msa0005160-mRNA-1:cds;Parent=Msa0005160-mRNA-1
chr1_1 three_prime_UTR 7624201 7624383 7624201 ID=Msa0005160-mRNA-1:three_prime_utr;Parent=Msa0005160-mRNA-1
Gene Sequence

>Msa0005160

TGTCCTGTTCCGTTAGAACAGCAGCCCATAAACGAGTACCAGTCGTTATCGACGTCGTTCCCGTTTTCATGGGCTGCTGGTGATGTTGTTGAATATGGTTCCCGGCTTTTTGTTGTGGGCTTTTCCTTTGCCTTGCTTGTGGGGTTACCTGTGGCTTGGTTTGGAACTGTTGGGGCACAATATGAGCCTGCTAAGAGAATTGTTTGTGCTGCTTCTAGTGGTGTTTTGGCGGTTACTTTTGCGGTTGTTAGGATGTATCTTGGTTGGGCTTATGTTGGGAATCATGAGGAGACAGGGTGGTATGATGGCCAGATATGGGTGAAGACTGCTGAGGTTTTGGCACGTGATAGACTCTTGGGATCATTTTCTGTTAAGCCTGTACTCGGTAGATTGAAAATCACTCTAGTCGGTCTGGCAGCATGCTTGGTGACATGTGCACTTATCTTCATTAACATTGATGAAAGTTATTTAACATCGAGAGAAACCGGAGTTCGAGCAATACCTGGAGCTTACAATGATGAATCTGCAAGATCATTTGAACCAGATGCATTTTGTGGTGAGCCTGATCTTGAAGAATAG

Protein sequence

>Msa0005160

CPVPLEQQPINEYQSLSTSFPFSWAAGDVVEYGSRLFVVGFSFALLVGLPVAWFGTVGAQYEPAKRIVCAASSGVLAVTFAVVRMYLGWAYVGNHEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLGRLKITLVGLAACLVTCALIFINIDESYLTSRETGVRAIPGAYNDESARSFEPDAFCGEPDLEE*