AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0210880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0210880 MtrunA17_Chr2g0309391 95.053 283 10 1 1 283 1 279 0.0 540
Msa0210880 MtrunA17_Chr3g0122831 40.367 109 64 1 62 170 14 121 7.59e-20 84.3
Msa0210880 MtrunA17_Chr2g0322301 36.607 112 70 1 65 176 26 136 4.65e-18 79.7
Msa0210880 MtrunA17_Chr7g0275651 35.484 93 59 1 84 176 114 205 1.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0210880 AT3G12685.1 45.570 237 70 5 46 282 35 212 5.35e-59 187
Msa0210880 AT1G24350.2 38.679 106 64 1 65 170 22 126 1.30e-18 80.9
Msa0210880 AT1G24350.4 38.679 106 64 1 65 170 22 126 1.32e-18 80.9
Msa0210880 AT1G24350.5 38.679 106 64 1 65 170 22 126 1.91e-18 80.5
Msa0210880 AT1G24350.1 38.679 106 64 1 65 170 22 126 5.30e-18 79.7
Msa0210880 AT1G24350.3 38.679 106 64 1 65 170 22 126 6.28e-18 80.1
Msa0210880 AT3G21610.1 38.318 107 65 1 64 170 32 137 9.61e-18 79.3
Msa0210880 AT1G67600.1 36.792 106 66 1 65 170 18 122 1.65e-16 75.5
Msa0210880 AT3G21610.2 41.772 79 46 0 92 170 7 85 1.52e-15 72.0
Msa0210880 AT3G61770.1 32.203 118 79 1 59 176 134 250 4.16e-14 71.2

Find 65 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGTAATATCTAGGTTTA+TGG 0.177934 2_1:-51306550 Msa0210880:three_prime_UTR
TATCAGACCCTCTTTATATT+TGG 0.178412 2_1:+51306973 None:intergenic
GTTCCAAGAAACCACTTCTT+TGG 0.226096 2_1:-51306891 Msa0210880:CDS
TCTATAACCTATTCAATATA+AGG 0.257270 2_1:+51306600 None:intergenic
CGCTCAAATTGCTCATAATA+AGG 0.268738 2_1:-51310416 Msa0210880:intron
TTGAACTGCGCAAGCAAAAT+AGG 0.307337 2_1:-51310699 Msa0210880:five_prime_UTR
GAAACATGTTTGGTTGGTTA+AGG 0.332531 2_1:+51310637 None:intergenic
GTTCCAAAGAAGTGGTTTCT+TGG 0.334368 2_1:+51306888 None:intergenic
TTAAATCAGGAAGCATAATA+AGG 0.350575 2_1:-51306838 Msa0210880:CDS
ATTTCTTCTCTTGCTGCTGC+TGG 0.351086 2_1:-51310454 Msa0210880:CDS
TACAGAAACACGGAAGTAAA+TGG 0.351210 2_1:+51309760 None:intergenic
GCTGGAGTTTCAATGGCAAT+TGG 0.360865 2_1:-51309796 Msa0210880:CDS
AAGTGGTTTCTTGGAACAAA+AGG 0.368554 2_1:+51306897 None:intergenic
ATTTATTATTATTGATCAAA+TGG 0.373625 2_1:-51306487 Msa0210880:three_prime_UTR
TGTTATACCTTATATTGAAT+AGG 0.389991 2_1:-51306607 Msa0210880:three_prime_UTR
GTTGTAGCTGGTGGTTTACT+TGG 0.399977 2_1:-51306698 Msa0210880:CDS
CTTTATATTTGGAATGTACA+TGG 0.402977 2_1:+51306984 None:intergenic
AGTAAACAATGAAACATGTT+TGG 0.413668 2_1:+51310627 None:intergenic
AATTGTTGATGATGAAGAAA+TGG 0.414445 2_1:+51310520 None:intergenic
CAGGGTGTAAGAAGAGAAGT+AGG 0.415373 2_1:-51307055 Msa0210880:CDS
GTGGCTTGTGCAACATTACT+TGG 0.416239 2_1:-51309553 Msa0210880:CDS
AGTGAGGGAAATTGAGAAGA+AGG 0.418480 2_1:+51310556 None:intergenic
CAACAAACTACTTCTCCAAA+TGG 0.418502 2_1:-51307014 Msa0210880:CDS
GATTGCAGCTGGAGTTTCAA+TGG 0.421077 2_1:-51309803 Msa0210880:CDS
CTGGAGTTTCAATGGCAATT+GGG 0.423404 2_1:-51309795 Msa0210880:CDS
GGTCTTGCAGTTGTGTATGC+TGG 0.423581 2_1:-51309376 Msa0210880:CDS
ACAAATGTATTAGTTAAATC+AGG 0.423899 2_1:-51306851 Msa0210880:CDS
GTACATGGTTGACATCCATT+TGG 0.431928 2_1:+51306999 None:intergenic
GCTTAGGTTCTGATTGCAGC+TGG 0.432168 2_1:-51309814 Msa0210880:intron
TCCTTTCTACGAAAACTGAA+TGG 0.434415 2_1:+51310496 None:intergenic
ACCATCAGCAACCAACTTTG+AGG 0.444572 2_1:+51306763 None:intergenic
AAATCAAGTCAGTAATATCT+AGG 0.445071 2_1:-51306557 Msa0210880:three_prime_UTR
TTTACTTCCGTGTTTCTGTA+TGG 0.449321 2_1:-51309757 Msa0210880:CDS
TCTGATTATGTATGATGCTC+AGG 0.450552 2_1:-51309353 Msa0210880:intron
CATACAGAAGAGTGTGATGA+TGG 0.451794 2_1:+51309691 None:intergenic
AACAATGAAACATGTTTGGT+TGG 0.464548 2_1:+51310631 None:intergenic
TTTGGTGGATTGGATGATCC+AGG 0.472553 2_1:+51306941 None:intergenic
TTGGTTAAGGTAACATGCTA+TGG 0.478697 2_1:+51310650 None:intergenic
ATCAAGGCTCTTATTCAAGC+TGG 0.483515 2_1:-51309721 Msa0210880:CDS
CTGAATTATCTTACCTCTCA+AGG 0.488483 2_1:+51309530 None:intergenic
AGTGGTTTCTTGGAACAAAA+GGG 0.494613 2_1:+51306898 None:intergenic
TGCAAAAGAAACCTCAAAGT+TGG 0.498213 2_1:-51306774 Msa0210880:CDS
TGGCAAAGAGTTTGATATCA+AGG 0.498368 2_1:-51309737 Msa0210880:CDS
TGGATTTCTTTGTTTGAGTG+AGG 0.504915 2_1:+51310540 None:intergenic
ACCTCAAAGTTGGTTGCTGA+TGG 0.525196 2_1:-51306764 Msa0210880:CDS
TGTACATTCCAAATATAAAG+AGG 0.527963 2_1:-51306981 Msa0210880:CDS
AGCAAGAGAAGAAATTCTAA+AGG 0.529822 2_1:+51310462 None:intergenic
ACATTTGTATTAGCTTGTTG+TGG 0.534702 2_1:+51306866 None:intergenic
GGATTTCTTTGTTTGAGTGA+GGG 0.539654 2_1:+51310541 None:intergenic
CAACATTACTTGGCCTTGAG+AGG 0.541258 2_1:-51309543 Msa0210880:intron
TTGTTGTGGTTCCAAAGAAG+TGG 0.567196 2_1:+51306880 None:intergenic
TGCATCTTCTAAGAAATCAG+AGG 0.571365 2_1:+51306793 None:intergenic
AGGGTGTAAGAAGAGAAGTA+GGG 0.572177 2_1:-51307054 Msa0210880:CDS
AAGGCTCTTATTCAAGCTGG+AGG 0.574041 2_1:-51309718 Msa0210880:CDS
CTGCCATTAAAAGAAACTGT+TGG 0.586551 2_1:-51306737 Msa0210880:CDS
CATAATAAGGCAAAGTGACG+AGG 0.594995 2_1:-51306825 Msa0210880:CDS
ACTGAGGTTGAAGTTGTAGC+TGG 0.595839 2_1:-51306710 Msa0210880:CDS
GTACATTCCAAATATAAAGA+GGG 0.618220 2_1:-51306980 Msa0210880:CDS
CATGCTATGGATAATATGAG+AGG 0.618536 2_1:+51310663 None:intergenic
CTCTTTGCCATACAGAAACA+CGG 0.620649 2_1:+51309750 None:intergenic
ATACAGAAGAGTGTGATGAT+GGG 0.621467 2_1:+51309692 None:intergenic
AGGCTCTTATTCAAGCTGGA+GGG 0.631515 2_1:-51309717 Msa0210880:CDS
GAGGTTGAAGTTGTAGCTGG+TGG 0.638885 2_1:-51306707 Msa0210880:CDS
GGTCTGATAAACTCTCAACC+TGG 0.659859 2_1:-51306959 Msa0210880:CDS
AGAAACTGTTGGTCATACTG+AGG 0.680359 2_1:-51306726 Msa0210880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATTATGAATTTATTTA+TGG - chr2_1:51309715-51309734 Msa0210880:CDS 10.0%
!!! GGTTTTATATAATATAAATA+AGG + chr2_1:51309996-51310015 None:intergenic 10.0%
!! ATTTATTATTATTGATCAAA+TGG - chr2_1:51310675-51310694 Msa0210880:five_prime_UTR 10.0%
!!! TGATTTTCTCAAATAATTAT+TGG - chr2_1:51306964-51306983 Msa0210880:CDS 15.0%
!! CAACAAAACAATATAAAATT+TGG + chr2_1:51307280-51307299 None:intergenic 15.0%
!!! TAGTTGTTTAAATTTTCTTT+TGG - chr2_1:51307576-51307595 Msa0210880:intron 15.0%
!! AACTAAATAACATGAAAAAT+GGG + chr2_1:51307854-51307873 None:intergenic 15.0%
!! AAACTAAATAACATGAAAAA+TGG + chr2_1:51307855-51307874 None:intergenic 15.0%
!!! CAAATCTTTTTTATAAGAAA+AGG + chr2_1:51308630-51308649 None:intergenic 15.0%
!!! AGGATTTTTTTTTTTTTTTG+CGG + chr2_1:51309408-51309427 None:intergenic 15.0%
!!! TTTTTTCATGTTAATGTTAA+TGG - chr2_1:51309657-51309676 Msa0210880:intron 15.0%
!! TATGAATTTATTTATGGTTA+TGG - chr2_1:51309721-51309740 Msa0210880:CDS 15.0%
!! AAAACAAGTGATACAAAAAT+GGG + chr2_1:51306775-51306794 None:intergenic 20.0%
!! AAAAACAAGTGATACAAAAA+TGG + chr2_1:51306776-51306795 None:intergenic 20.0%
!! TGAAAAATGTGTTTATAAGT+GGG - chr2_1:51307202-51307221 Msa0210880:intron 20.0%
!!! TTTGTGATATTTTTTTGCTT+AGG - chr2_1:51307332-51307351 Msa0210880:intron 20.0%
!!! GTTTAAATTTTCTTTTGGAT+AGG - chr2_1:51307581-51307600 Msa0210880:intron 20.0%
!! ATCAATGATTAAACTATTTG+TGG - chr2_1:51308027-51308046 Msa0210880:intron 20.0%
!! TCAAAGAATATTATAAGTAG+TGG - chr2_1:51308113-51308132 Msa0210880:intron 20.0%
!! TTTAGATTACTAACTAATTC+AGG - chr2_1:51308492-51308511 Msa0210880:intron 20.0%
!! AATAAGATTTCTATGTTGTA+AGG + chr2_1:51308725-51308744 None:intergenic 20.0%
!!! AATTTACTTATTTCTTGTGA+AGG - chr2_1:51308861-51308880 Msa0210880:intron 20.0%
!! ATTCATAATCATAAATACAG+AGG + chr2_1:51309708-51309727 None:intergenic 20.0%
!! ACAAATGTATTAGTTAAATC+AGG - chr2_1:51310311-51310330 Msa0210880:intron 20.0%
!! TGTTATACCTTATATTGAAT+AGG - chr2_1:51310555-51310574 Msa0210880:CDS 20.0%
!! TCTATAACCTATTCAATATA+AGG + chr2_1:51310565-51310584 None:intergenic 20.0%
! AGTAAACAATGAAACATGTT+TGG + chr2_1:51306538-51306557 None:intergenic 25.0%
!!! AATTGTTGATGATGAAGAAA+TGG + chr2_1:51306645-51306664 None:intergenic 25.0%
!! TCAAATAATTATTGGTAACC+CGG - chr2_1:51306972-51306991 Msa0210880:CDS 25.0%
! CTGAAAAATGTGTTTATAAG+TGG - chr2_1:51307201-51307220 Msa0210880:intron 25.0%
! GAAAAATGTGTTTATAAGTG+GGG - chr2_1:51307203-51307222 Msa0210880:intron 25.0%
! TGTTTATTATACAAATGCAG+AGG - chr2_1:51307744-51307763 Msa0210880:intron 25.0%
! AAACTTAATGAAGGAATCTT+AGG - chr2_1:51307945-51307964 Msa0210880:intron 25.0%
! AGCAAATATACTCAATATCT+TGG + chr2_1:51307992-51308011 None:intergenic 25.0%
! TCATTAACATTTCAACCTAT+AGG - chr2_1:51308305-51308324 Msa0210880:intron 25.0%
! CAATATTCTTCCATTAGTTA+GGG + chr2_1:51308462-51308481 None:intergenic 25.0%
! ACAATATTCTTCCATTAGTT+AGG + chr2_1:51308463-51308482 None:intergenic 25.0%
! TTTAAAGACTTCTTTATCTG+AGG + chr2_1:51308546-51308565 None:intergenic 25.0%
!! AGATAAAGAAGTCTTTAAAG+AGG - chr2_1:51308547-51308566 Msa0210880:intron 25.0%
!! GATAAAGAAGTCTTTAAAGA+GGG - chr2_1:51308548-51308567 Msa0210880:intron 25.0%
! GTGTGAAATAAACAACAAAA+GGG + chr2_1:51308836-51308855 None:intergenic 25.0%
! TGTGTGAAATAAACAACAAA+AGG + chr2_1:51308837-51308856 None:intergenic 25.0%
! TCAAATAAGTCAATCAAAAG+AGG + chr2_1:51309034-51309053 None:intergenic 25.0%
! AACACAAAAATGAAGAAAAC+TGG + chr2_1:51309504-51309523 None:intergenic 25.0%
! TGTTTATGAACCTAGTTTAA+TGG - chr2_1:51309763-51309782 Msa0210880:CDS 25.0%
!!! AATATAAATAAGGCCTTGTT+CGG + chr2_1:51309986-51310005 None:intergenic 25.0%
! ACAGAATGATAAAAGGATAA+AGG + chr2_1:51310017-51310036 None:intergenic 25.0%
! AACAGAAACAGAATGATAAA+AGG + chr2_1:51310024-51310043 None:intergenic 25.0%
!!! TATTGAACATGATTGTTTTG+TGG - chr2_1:51310044-51310063 Msa0210880:intron 25.0%
!!! ATTGAACATGATTGTTTTGT+GGG - chr2_1:51310045-51310064 Msa0210880:intron 25.0%
!! CTTTATATTTGGAATGTACA+TGG + chr2_1:51310181-51310200 None:intergenic 25.0%
! TGTACATTCCAAATATAAAG+AGG - chr2_1:51310181-51310200 Msa0210880:intron 25.0%
! GTACATTCCAAATATAAAGA+GGG - chr2_1:51310182-51310201 Msa0210880:intron 25.0%
!! TTAAATCAGGAAGCATAATA+AGG - chr2_1:51310324-51310343 Msa0210880:intron 25.0%
! AAATCAAGTCAGTAATATCT+AGG - chr2_1:51310605-51310624 Msa0210880:exon 25.0%
AACAATGAAACATGTTTGGT+TGG + chr2_1:51306534-51306553 None:intergenic 30.0%
AGCAAGAGAAGAAATTCTAA+AGG + chr2_1:51306703-51306722 None:intergenic 30.0%
! TTTTATGTCTCTGCAAATCT+TGG - chr2_1:51306792-51306811 Msa0210880:CDS 30.0%
TTTATGTCTCTGCAAATCTT+GGG - chr2_1:51306793-51306812 Msa0210880:CDS 30.0%
! CAAATAATTATTGGTAACCC+GGG - chr2_1:51306973-51306992 Msa0210880:CDS 30.0%
ATATGATATCCTATGAAGCA+CGG + chr2_1:51307018-51307037 None:intergenic 30.0%
!! ACGTTTTTGAGAACATGTTT+AGG + chr2_1:51307043-51307062 None:intergenic 30.0%
!!! CTCAAAAACGTGTTTTAAGA+TGG - chr2_1:51307052-51307071 Msa0210880:CDS 30.0%
GAGTCTATCAAATATTCGTT+AGG - chr2_1:51307080-51307099 Msa0210880:intron 30.0%
AAAATCGATCTATACGATGA+GGG + chr2_1:51307235-51307254 None:intergenic 30.0%
!! ATCGTATAGATCGATTTTGT+AGG - chr2_1:51307237-51307256 Msa0210880:intron 30.0%
!! TGTTGTTTCATTTGCTGAAT+TGG - chr2_1:51307295-51307314 Msa0210880:intron 30.0%
! GTTGTTTCATTTGCTGAATT+GGG - chr2_1:51307296-51307315 Msa0210880:intron 30.0%
! AAGTAGGATTTACTGGTTAA+GGG + chr2_1:51307506-51307525 None:intergenic 30.0%
! AAAGTAGGATTTACTGGTTA+AGG + chr2_1:51307507-51307526 None:intergenic 30.0%
GAAATGAAAGTAGGATTTAC+TGG + chr2_1:51307513-51307532 None:intergenic 30.0%
GACTATGTCAAACTTAATGA+AGG - chr2_1:51307936-51307955 Msa0210880:intron 30.0%
TATTTGTGGAATTCTTACCA+TGG - chr2_1:51308041-51308060 Msa0210880:intron 30.0%
TACTGTTAGTAAACAGGAAA+TGG - chr2_1:51308067-51308086 Msa0210880:intron 30.0%
GAAATGTTAATGAAGTGACA+AGG + chr2_1:51308298-51308317 None:intergenic 30.0%
! TCATTTGCTAAGTTTCCTAT+AGG + chr2_1:51308323-51308342 None:intergenic 30.0%
ATAGGAAACTTAGCAAATGA+AGG - chr2_1:51308323-51308342 Msa0210880:intron 30.0%
AGGTTCTACAAAGAAAAGAA+TGG - chr2_1:51308343-51308362 Msa0210880:intron 30.0%
! AAAAGAATGGATGTCACTTA+GGG - chr2_1:51308356-51308375 Msa0210880:intron 30.0%
! TTTATCTCAGACATGGATTA+TGG - chr2_1:51308413-51308432 Msa0210880:intron 30.0%
AAAGCTTAAAAGCCTTCAAT+AGG - chr2_1:51308672-51308691 Msa0210880:intron 30.0%
TATGTTGTAAGGATTGTTTC+AGG + chr2_1:51308714-51308733 None:intergenic 30.0%
AATATATCCTCTACGTATAC+AGG + chr2_1:51308758-51308777 None:intergenic 30.0%
ATAATTACAGGGTGAACAAA+AGG + chr2_1:51308905-51308924 None:intergenic 30.0%
AAAACATTGTCCATAGTCAA+TGG - chr2_1:51308937-51308956 Msa0210880:intron 30.0%
TATCGCAGATGAAAACTTAT+TGG - chr2_1:51308999-51309018 Msa0210880:intron 30.0%
TGAAAACTTATTGGTACTTG+TGG - chr2_1:51309008-51309027 Msa0210880:intron 30.0%
TAAGTATTCGTGAGACTATT+TGG - chr2_1:51309069-51309088 Msa0210880:intron 30.0%
TTATAGAGATACGCTCAAAA+TGG + chr2_1:51309132-51309151 None:intergenic 30.0%
TACGATCATACAATTCAGAA+TGG - chr2_1:51309265-51309284 Msa0210880:intron 30.0%
ACGATCATACAATTCAGAAT+GGG - chr2_1:51309266-51309285 Msa0210880:intron 30.0%
CTAAATCACACCATTAAACT+AGG + chr2_1:51309776-51309795 None:intergenic 30.0%
AGTTTAATGGTGTGATTTAG+AGG - chr2_1:51309776-51309795 Msa0210880:CDS 30.0%
!! AGATCTTAACTTGTTGATCA+CGG + chr2_1:51309858-51309877 None:intergenic 30.0%
TATCAGACCCTCTTTATATT+TGG + chr2_1:51310192-51310211 None:intergenic 30.0%
! TTTTCTTGAGTTTCTGCTTT+TGG + chr2_1:51310242-51310261 None:intergenic 30.0%
!! ACATTTGTATTAGCTTGTTG+TGG + chr2_1:51310299-51310318 None:intergenic 30.0%
! TGACCAACAGTTTCTTTTAA+TGG + chr2_1:51310431-51310450 None:intergenic 30.0%
!!! GTTTACTTGGATTTTTGGTT+GGG - chr2_1:51310477-51310496 Msa0210880:CDS 30.0%
GTCAGTAATATCTAGGTTTA+TGG - chr2_1:51310612-51310631 Msa0210880:exon 30.0%
CATGCTATGGATAATATGAG+AGG + chr2_1:51306502-51306521 None:intergenic 35.0%
TTGGTTAAGGTAACATGCTA+TGG + chr2_1:51306515-51306534 None:intergenic 35.0%
! GAAACATGTTTGGTTGGTTA+AGG + chr2_1:51306528-51306547 None:intergenic 35.0%
! GGATTTCTTTGTTTGAGTGA+GGG + chr2_1:51306624-51306643 None:intergenic 35.0%
! TGGATTTCTTTGTTTGAGTG+AGG + chr2_1:51306625-51306644 None:intergenic 35.0%
! TCCATTCAGTTTTCGTAGAA+AGG - chr2_1:51306665-51306684 Msa0210880:CDS 35.0%
TCCTTTCTACGAAAACTGAA+TGG + chr2_1:51306669-51306688 None:intergenic 35.0%
CGCTCAAATTGCTCATAATA+AGG - chr2_1:51306746-51306765 Msa0210880:CDS 35.0%
!!! AGGCTACTTTTACACACTAT+CGG - chr2_1:51307100-51307119 Msa0210880:intron 35.0%
AGACTATATCTCATCCAATG+TGG + chr2_1:51307183-51307202 None:intergenic 35.0%
CAAAATCGATCTATACGATG+AGG + chr2_1:51307236-51307255 None:intergenic 35.0%
TACAGAAACACGGAAGTAAA+TGG + chr2_1:51307405-51307424 None:intergenic 35.0%
! TTTACTTCCGTGTTTCTGTA+TGG - chr2_1:51307405-51307424 Msa0210880:intron 35.0%
TGGCAAAGAGTTTGATATCA+AGG - chr2_1:51307425-51307444 Msa0210880:intron 35.0%
! ATACAGAAGAGTGTGATGAT+GGG + chr2_1:51307473-51307492 None:intergenic 35.0%
GGCATAGATGAAATGAAAGT+AGG + chr2_1:51307522-51307541 None:intergenic 35.0%
CTGAATTATCTTACCTCTCA+AGG + chr2_1:51307635-51307654 None:intergenic 35.0%
!! TCAGTTATGCTGACTTAGTA+TGG - chr2_1:51307651-51307670 Msa0210880:intron 35.0%
ACAACTGCAAGACCAAAAAT+GGG + chr2_1:51307780-51307799 None:intergenic 35.0%
TCTGATTATGTATGATGCTC+AGG - chr2_1:51307809-51307828 Msa0210880:intron 35.0%
GAATCCTAGCATAGTCAAAA+GGG + chr2_1:51307905-51307924 None:intergenic 35.0%
TTGACATAGTCTAAGTACAG+TGG + chr2_1:51307927-51307946 None:intergenic 35.0%
GTTTACTAACAGTAACACCA+TGG + chr2_1:51308061-51308080 None:intergenic 35.0%
!! TGGTGTTACTGTTAGTAAAC+AGG - chr2_1:51308061-51308080 Msa0210880:intron 35.0%
! ATCGTATCAAACACTCCTTT+TGG - chr2_1:51308242-51308261 Msa0210880:intron 35.0%
CCTATACAAATGAGACCAAA+AGG + chr2_1:51308260-51308279 None:intergenic 35.0%
! CCTTTTGGTCTCATTTGTAT+AGG - chr2_1:51308257-51308276 Msa0210880:intron 35.0%
! GAAAAGAATGGATGTCACTT+AGG - chr2_1:51308355-51308374 Msa0210880:intron 35.0%
GGACTTATTTATCTCAGACA+TGG - chr2_1:51308406-51308425 Msa0210880:intron 35.0%
TCAATAGGATAGCCTATTGA+AGG + chr2_1:51308687-51308706 None:intergenic 35.0%
TCAGAGTGAGGATAATTACA+GGG + chr2_1:51308916-51308935 None:intergenic 35.0%
! TAGACTTAAGCCATTGACTA+TGG + chr2_1:51308950-51308969 None:intergenic 35.0%
AGTCTCACGAATACTTATGT+CGG + chr2_1:51309066-51309085 None:intergenic 35.0%
TATTCGTGAGACTATTTGGA+AGG - chr2_1:51309073-51309092 Msa0210880:intron 35.0%
ATTCGTGAGACTATTTGGAA+GGG - chr2_1:51309074-51309093 Msa0210880:intron 35.0%
ATACGCTCAAAATGGCTTAT+GGG + chr2_1:51309124-51309143 None:intergenic 35.0%
CGTATCTCTATAAGTTCTTC+AGG - chr2_1:51309139-51309158 Msa0210880:intron 35.0%
TTGTAGAATCGTGAGTATGA+TGG - chr2_1:51309224-51309243 Msa0210880:intron 35.0%
ACCAAGAAAATTCCCCAATT+CGG - chr2_1:51309373-51309392 Msa0210880:CDS 35.0%
!!! TCCTGTTTTTTAATGCTCAC+TGG - chr2_1:51309424-51309443 Msa0210880:intron 35.0%
ACCAGTGAGCATTAAAAAAC+AGG + chr2_1:51309428-51309447 None:intergenic 35.0%
!!! TTTTTTAATGCTCACTGGTG+CGG - chr2_1:51309429-51309448 Msa0210880:intron 35.0%
! TTAAGTTGCTTATCCGAACA+AGG - chr2_1:51309970-51309989 Msa0210880:intron 35.0%
! ACTGATTTCTGTGATTTGCA+GGG - chr2_1:51310089-51310108 Msa0210880:intron 35.0%
CAACAAACTACTTCTCCAAA+TGG - chr2_1:51310148-51310167 Msa0210880:intron 35.0%
AGTGGTTTCTTGGAACAAAA+GGG + chr2_1:51310267-51310286 None:intergenic 35.0%
AAGTGGTTTCTTGGAACAAA+AGG + chr2_1:51310268-51310287 None:intergenic 35.0%
! TGCATCTTCTAAGAAATCAG+AGG + chr2_1:51310372-51310391 None:intergenic 35.0%
TGCAAAAGAAACCTCAAAGT+TGG - chr2_1:51310388-51310407 Msa0210880:intron 35.0%
CTGCCATTAAAAGAAACTGT+TGG - chr2_1:51310425-51310444 Msa0210880:CDS 35.0%
! TGGTGGTTTACTTGGATTTT+TGG - chr2_1:51310472-51310491 Msa0210880:CDS 35.0%
!!! GGTTTACTTGGATTTTTGGT+TGG - chr2_1:51310476-51310495 Msa0210880:CDS 35.0%
TTGAACTGCGCAAGCAAAAT+AGG - chr2_1:51306463-51306482 Msa0210880:three_prime_UTR 40.0%
AGTGAGGGAAATTGAGAAGA+AGG + chr2_1:51306609-51306628 None:intergenic 40.0%
GTACGTTGTGCTCATCTAAT+TGG + chr2_1:51306874-51306893 None:intergenic 40.0%
!! GTACCGACACTTTTGATCAA+AGG - chr2_1:51306890-51306909 Msa0210880:CDS 40.0%
! ACGCCTTTGATCAAAAGTGT+CGG + chr2_1:51306896-51306915 None:intergenic 40.0%
TTGAATGTAATGACATGCGC+CGG + chr2_1:51306932-51306951 None:intergenic 40.0%
!!! GGCTACTTTTACACACTATC+GGG - chr2_1:51307101-51307120 Msa0210880:intron 40.0%
CTGGAGTTTCAATGGCAATT+GGG - chr2_1:51307367-51307386 Msa0210880:intron 40.0%
CTCTTTGCCATACAGAAACA+CGG + chr2_1:51307415-51307434 None:intergenic 40.0%
ATCAAGGCTCTTATTCAAGC+TGG - chr2_1:51307441-51307460 Msa0210880:intron 40.0%
! CATACAGAAGAGTGTGATGA+TGG + chr2_1:51307474-51307493 None:intergenic 40.0%
GTGAAACAGCACTATTCAAG+TGG + chr2_1:51307543-51307562 None:intergenic 40.0%
! TTCTTTTGGATAGGCAACAG+TGG - chr2_1:51307590-51307609 Msa0210880:intron 40.0%
CACAACTGCAAGACCAAAAA+TGG + chr2_1:51307781-51307800 None:intergenic 40.0%
GCACATCAAAAGACTGATAC+GGG + chr2_1:51307883-51307902 None:intergenic 40.0%
GGCACATCAAAAGACTGATA+CGG + chr2_1:51307884-51307903 None:intergenic 40.0%
GGAATCCTAGCATAGTCAAA+AGG + chr2_1:51307906-51307925 None:intergenic 40.0%
GTGGGAAAGAAATGGTTGTA+CGG - chr2_1:51308385-51308404 Msa0210880:intron 40.0%
ACTTCTTTATCTGAGGACTC+AGG + chr2_1:51308539-51308558 None:intergenic 40.0%
ATTGTTTCAGGCTGCTCAAT+AGG + chr2_1:51308702-51308721 None:intergenic 40.0%
GTCATATCCTGTATACGTAG+AGG - chr2_1:51308748-51308767 Msa0210880:intron 40.0%
GTCAGAGTGAGGATAATTAC+AGG + chr2_1:51308917-51308936 None:intergenic 40.0%
! GACAATGTTTTGTCAGAGTG+AGG + chr2_1:51308928-51308947 None:intergenic 40.0%
GATACGCTCAAAATGGCTTA+TGG + chr2_1:51309125-51309144 None:intergenic 40.0%
TAGAATCGTGAGTATGATGG+TGG - chr2_1:51309227-51309246 Msa0210880:intron 40.0%
TCCCAAGAATACGACCTTAA+CGG + chr2_1:51309309-51309328 None:intergenic 40.0%
TAAGGTCGTATTCTTGGGAT+CGG - chr2_1:51309310-51309329 Msa0210880:intron 40.0%
CCAAGAAAATTCCCCAATTC+GGG - chr2_1:51309374-51309393 Msa0210880:CDS 40.0%
! TTTTTAATGCTCACTGGTGC+GGG - chr2_1:51309430-51309449 Msa0210880:intron 40.0%
! TTCTTCTGTTACTTGTGCTG+TGG - chr2_1:51309615-51309634 Msa0210880:intron 40.0%
! TCTTCTGTTACTTGTGCTGT+GGG - chr2_1:51309616-51309635 Msa0210880:intron 40.0%
GTCTTCATTGTAAGCCAAAC+AGG + chr2_1:51310071-51310090 None:intergenic 40.0%
! GACTGATTTCTGTGATTTGC+AGG - chr2_1:51310088-51310107 Msa0210880:intron 40.0%
AGGGTGTAAGAAGAGAAGTA+GGG - chr2_1:51310108-51310127 Msa0210880:intron 40.0%
GTACATGGTTGACATCCATT+TGG + chr2_1:51310166-51310185 None:intergenic 40.0%
!! AGTTTCTGCTTTTGGTGGAT+TGG + chr2_1:51310234-51310253 None:intergenic 40.0%
!! TCTTGAGTTTCTGCTTTTGG+TGG + chr2_1:51310239-51310258 None:intergenic 40.0%
GTTCCAAGAAACCACTTCTT+TGG - chr2_1:51310271-51310290 Msa0210880:intron 40.0%
GTTCCAAAGAAGTGGTTTCT+TGG + chr2_1:51310277-51310296 None:intergenic 40.0%
TTGTTGTGGTTCCAAAGAAG+TGG + chr2_1:51310285-51310304 None:intergenic 40.0%
CATAATAAGGCAAAGTGACG+AGG - chr2_1:51310337-51310356 Msa0210880:intron 40.0%
AGAAACTGTTGGTCATACTG+AGG - chr2_1:51310436-51310455 Msa0210880:CDS 40.0%
ATTTCTTCTCTTGCTGCTGC+TGG - chr2_1:51306708-51306727 Msa0210880:CDS 45.0%
! GACACTTTTGATCAAAGGCG+TGG - chr2_1:51306895-51306914 Msa0210880:CDS 45.0%
ACAGACACATAACACAACCC+GGG + chr2_1:51306993-51307012 None:intergenic 45.0%
CACAGACACATAACACAACC+CGG + chr2_1:51306994-51307013 None:intergenic 45.0%
ACACGCCATATGTTTAGTCG+TGG - chr2_1:51307135-51307154 Msa0210880:intron 45.0%
CACGCCATATGTTTAGTCGT+GGG - chr2_1:51307136-51307155 Msa0210880:intron 45.0%
AGTGTGTTGAGAGTCCACAT+TGG - chr2_1:51307166-51307185 Msa0210880:intron 45.0%
GATTGCAGCTGGAGTTTCAA+TGG - chr2_1:51307359-51307378 Msa0210880:intron 45.0%
GCTGGAGTTTCAATGGCAAT+TGG - chr2_1:51307366-51307385 Msa0210880:intron 45.0%
AAGGCTCTTATTCAAGCTGG+AGG - chr2_1:51307444-51307463 Msa0210880:intron 45.0%
AGGCTCTTATTCAAGCTGGA+GGG - chr2_1:51307445-51307464 Msa0210880:intron 45.0%
! GTGGCTTGTGCAACATTACT+TGG - chr2_1:51307609-51307628 Msa0210880:intron 45.0%
!! CAACATTACTTGGCCTTGAG+AGG - chr2_1:51307619-51307638 Msa0210880:intron 45.0%
GACCAAAAATGGGATCTGAC+AGG + chr2_1:51307770-51307789 None:intergenic 45.0%
!! TGTGCCCTTTTGACTATGCT+AGG - chr2_1:51307898-51307917 Msa0210880:intron 45.0%
! ATGTCACTTAGGGTTGCAAG+TGG - chr2_1:51308366-51308385 Msa0210880:intron 45.0%
! TGTCACTTAGGGTTGCAAGT+GGG - chr2_1:51308367-51308386 Msa0210880:intron 45.0%
GGTTGCAAGTGGGAAAGAAA+TGG - chr2_1:51308377-51308396 Msa0210880:intron 45.0%
ATGTCGACGACCCTAACTAA+TGG - chr2_1:51308449-51308468 Msa0210880:intron 45.0%
GGTGCCAAATGACGTAAAGA+TGG - chr2_1:51308513-51308532 Msa0210880:intron 45.0%
CAGGCCATCTTTACGTCATT+TGG + chr2_1:51308520-51308539 None:intergenic 45.0%
TGCCGTTAAGGTCGTATTCT+TGG - chr2_1:51309304-51309323 Msa0210880:intron 45.0%
GCCGTTAAGGTCGTATTCTT+GGG - chr2_1:51309305-51309324 Msa0210880:intron 45.0%
! CCCGAATTGGGGAATTTTCT+TGG + chr2_1:51309377-51309396 None:intergenic 45.0%
AGAAAATTCCCCAATTCGGG+CGG - chr2_1:51309377-51309396 Msa0210880:CDS 45.0%
AAACAGAGAAACACGCTCAG+TGG + chr2_1:51309542-51309561 None:intergenic 45.0%
AAGAACTAGCACAGCAACAG+TGG + chr2_1:51309600-51309619 None:intergenic 45.0%
!! GATTGTTTTGTGGGCCTGTT+TGG - chr2_1:51310054-51310073 Msa0210880:intron 45.0%
CAGGGTGTAAGAAGAGAAGT+AGG - chr2_1:51310107-51310126 Msa0210880:intron 45.0%
GGTCTGATAAACTCTCAACC+TGG - chr2_1:51310203-51310222 Msa0210880:intron 45.0%
!! TTTGGTGGATTGGATGATCC+AGG + chr2_1:51310224-51310243 None:intergenic 45.0%
! ACCTCAAAGTTGGTTGCTGA+TGG - chr2_1:51310398-51310417 Msa0210880:intron 45.0%
ACCATCAGCAACCAACTTTG+AGG + chr2_1:51310402-51310421 None:intergenic 45.0%
ACTGAGGTTGAAGTTGTAGC+TGG - chr2_1:51310452-51310471 Msa0210880:CDS 45.0%
GTTGTAGCTGGTGGTTTACT+TGG - chr2_1:51310464-51310483 Msa0210880:CDS 45.0%
!!! ACTTGGATTTTTGGTTGGGC+TGG - chr2_1:51310481-51310500 Msa0210880:CDS 45.0%
!!! TTCTTTTTAATTTAAAAAAT+GGG + chr2_1:51309469-51309488 None:intergenic 5.0%
!!! TTTCTTTTTAATTTAAAAAA+TGG + chr2_1:51309470-51309489 None:intergenic 5.0%
!!! TTTTTAAATTAAAAAGAAAA+TGG - chr2_1:51309471-51309490 Msa0210880:intron 5.0%
AGGCGTGGCCATTATATGAC+CGG - chr2_1:51306910-51306929 Msa0210880:CDS 50.0%
! GACATGCGCCGGTCATATAA+TGG + chr2_1:51306921-51306940 None:intergenic 50.0%
TGTCTGTGTCCGTGCTTCAT+AGG - chr2_1:51307006-51307025 Msa0210880:CDS 50.0%
CACGCCCACGACTAAACATA+TGG + chr2_1:51307143-51307162 None:intergenic 50.0%
! GCTTAGGTTCTGATTGCAGC+TGG - chr2_1:51307348-51307367 Msa0210880:intron 50.0%
! GGCCTGTCAGATCCCATTTT+TGG - chr2_1:51307765-51307784 Msa0210880:intron 50.0%
GGTCTTGCAGTTGTGTATGC+TGG - chr2_1:51307786-51307805 Msa0210880:intron 50.0%
CCAGATGCAGATCTATCTGC+AGG + chr2_1:51308596-51308615 None:intergenic 50.0%
CCTGCAGATAGATCTGCATC+TGG - chr2_1:51308593-51308612 Msa0210880:intron 50.0%
CTTGGGATCGGTTGAATCAG+TGG - chr2_1:51309322-51309341 Msa0210880:intron 50.0%
GAAAATTCCCCAATTCGGGC+GGG - chr2_1:51309378-51309397 Msa0210880:CDS 50.0%
ATCGAGAGTCTGCGCAAGAT+GGG + chr2_1:51309892-51309911 None:intergenic 50.0%
AATCGAGAGTCTGCGCAAGA+TGG + chr2_1:51309893-51309912 None:intergenic 50.0%
GAGGTTGAAGTTGTAGCTGG+TGG - chr2_1:51310455-51310474 Msa0210880:CDS 50.0%
! TCTGTGCTGCAGTGCCGTTA+AGG - chr2_1:51309292-51309311 Msa0210880:intron 55.0%
GGATCGGTTGAATCAGTGGC+AGG - chr2_1:51309326-51309345 Msa0210880:intron 55.0%
CCTCGGTGAAACACTCTCAG+TGG + chr2_1:51309575-51309594 None:intergenic 55.0%
!! CCACTGAGAGTGTTTCACCG+AGG - chr2_1:51309572-51309591 Msa0210880:intron 55.0%
CGGAAAACCCGCCCGAATTG+GGG + chr2_1:51309388-51309407 None:intergenic 60.0%
GCGGAAAACCCGCCCGAATT+GGG + chr2_1:51309389-51309408 None:intergenic 60.0%
TGCGGAAAACCCGCCCGAAT+TGG + chr2_1:51309390-51309409 None:intergenic 60.0%
GAGTCTGCGCAAGATGGGAG+TGG + chr2_1:51309887-51309906 None:intergenic 60.0%
GCACAGCAACAGTGGCGCCT+CGG + chr2_1:51309592-51309611 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51306449 51310735 51306449 ID=Msa0210880;Name=Msa0210880
chr2_1 mRNA 51306449 51310735 51306449 ID=Msa0210880-mRNA-1;Parent=Msa0210880;Name=Msa0210880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=121|1|1|1|1|1|5|212|283
chr2_1 exon 51306449 51307074 51306449 ID=Msa0210880-mRNA-1:exon:14345;Parent=Msa0210880-mRNA-1
chr2_1 exon 51309354 51309420 51309354 ID=Msa0210880-mRNA-1:exon:14344;Parent=Msa0210880-mRNA-1
chr2_1 exon 51309544 51309581 51309544 ID=Msa0210880-mRNA-1:exon:14343;Parent=Msa0210880-mRNA-1
chr2_1 exon 51309696 51309830 51309696 ID=Msa0210880-mRNA-1:exon:14342;Parent=Msa0210880-mRNA-1
chr2_1 exon 51310417 51310735 51310417 ID=Msa0210880-mRNA-1:exon:14341;Parent=Msa0210880-mRNA-1
chr2_1 five_prime_UTR 51310615 51310735 51310615 ID=Msa0210880-mRNA-1:five_prime_utr;Parent=Msa0210880-mRNA-1
chr2_1 CDS 51310417 51310614 51310417 ID=Msa0210880-mRNA-1:cds;Parent=Msa0210880-mRNA-1
chr2_1 CDS 51309696 51309830 51309696 ID=Msa0210880-mRNA-1:cds;Parent=Msa0210880-mRNA-1
chr2_1 CDS 51309544 51309581 51309544 ID=Msa0210880-mRNA-1:cds;Parent=Msa0210880-mRNA-1
chr2_1 CDS 51309354 51309420 51309354 ID=Msa0210880-mRNA-1:cds;Parent=Msa0210880-mRNA-1
chr2_1 CDS 51306661 51307074 51306661 ID=Msa0210880-mRNA-1:cds;Parent=Msa0210880-mRNA-1
chr2_1 three_prime_UTR 51306449 51306660 51306449 ID=Msa0210880-mRNA-1:three_prime_utr;Parent=Msa0210880-mRNA-1
Gene Sequence

>Msa0210880

ATGATGTTGTTGCAACAATCAAATTTCTGTCTCATTCCTTCTTCTCAATTTCCCTCACTCAAACAAAGAAATCCATTTCTTCATCATCAACAATTTCCATTCAGTTTTCGTAGAAAGGATAAAGCTTCTACCTTTAGAATTTCTTCTCTTGCTGCTGCTGGTTTTTTCAATGATGTCGCTCAAATTGCTCATAATAAGGTTCTGATTGCAGCTGGAGTTTCAATGGCAATTGGGCAACTTTCTAAGCCATTTACTTCCGTGTTTCTGTATGGCAAAGAGTTTGATATCAAGGCTCTTATTCAAGCTGGAGGGTTCCCATCATCACACTCTTCTGCAACAGTGGCTTGTGCAACATTACTTGGCCTTGAGAGAGGCCTGTCAGATCCCATTTTTGGTCTTGCAGTTGTGTATGCTGGTCTGATTATGTATGATGCTCAGGGTGTAAGAAGAGAAGTAGGGATTCATGCTAAGACAATCAACAAACTACTTCTCCAAATGGATGTCAACCATGTACATTCCAAATATAAAGAGGGTCTGATAAACTCTCAACCTGGATCATCCAATCCACCAAAAGCAGAAACTCAAGAAAAATCCCTTTTGTTCCAAGAAACCACTTCTTTGGAACCACAACAAGCTAATACAAATGTATTAGTTAAATCAGGAAGCATAATAAGGCAAAGTGACGAGGAGCTACAATCCTCTGATTTCTTAGAAGATGCAAAAGAAACCTCAAAGTTGGTTGCTGATGGTCTACTGCCATTAAAAGAAACTGTTGGTCATACTGAGGTTGAAGTTGTAGCTGGTGGTTTACTTGGATTTTTGGTTGGGCTGGCTGTGTATAATTTGAAGTAA

Protein sequence

>Msa0210880

MMLLQQSNFCLIPSSQFPSLKQRNPFLHHQQFPFSFRRKDKASTFRISSLAAAGFFNDVAQIAHNKVLIAAGVSMAIGQLSKPFTSVFLYGKEFDIKALIQAGGFPSSHSSATVACATLLGLERGLSDPIFGLAVVYAGLIMYDAQGVRREVGIHAKTINKLLLQMDVNHVHSKYKEGLINSQPGSSNPPKAETQEKSLLFQETTSLEPQQANTNVLVKSGSIIRQSDEELQSSDFLEDAKETSKLVADGLLPLKETVGHTEVEVVAGGLLGFLVGLAVYNLK*