AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356410 MtrunA17_Chr6g0448851 97.458 354 8 1 1 353 1 354 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356410 AT1G66520.1 68.362 354 111 1 1 353 2 355 0.0 508
Msa1356410 AT1G66520.2 66.564 326 108 1 1 325 2 327 4.13e-161 454

Find 105 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTCAATGCAGCTGCTTTC+TGG 0.125708 tig0015628:+37062 Msa1356410:CDS
GTCCTTCATCCAATGTTTAA+TGG 0.173035 tig0015628:-37379 None:intergenic
TCATGAAGTTTACCTTATTA+TGG 0.225256 tig0015628:-35670 None:intergenic
CATTGAACTGCACACTTTCA+TGG 0.232858 tig0015628:-35842 None:intergenic
CAGGATCTAAACTTCTGATT+AGG 0.275769 tig0015628:+34682 Msa1356410:intron
CTTATCAGATTTAAAAGCTT+TGG 0.282909 tig0015628:+33181 Msa1356410:CDS
TTTCTAGATATTCCTCCTTC+TGG 0.297526 tig0015628:+33254 Msa1356410:CDS
TTATGCATTACGGCTGCTTA+TGG 0.303086 tig0015628:+33212 Msa1356410:CDS
AGGAGGAATATCTAGAAATT+TGG 0.308117 tig0015628:-33249 None:intergenic
ATCGTTAATTGGCGAGTATA+CGG 0.308442 tig0015628:+32625 Msa1356410:five_prime_UTR
AGCATCTGTTCTCCATAATA+AGG 0.323120 tig0015628:+35658 Msa1356410:CDS
AAAGTAAAGTTCTGAAGTTT+TGG 0.328892 tig0015628:+37325 Msa1356410:three_prime_UTR
TGCTTTCTGGAATGGCCTCC+GGG 0.329802 tig0015628:+37075 Msa1356410:CDS
TCCAGTTCAAAGAGCATTGC+AGG 0.331837 tig0015628:+33768 Msa1356410:CDS
AAATTATCCTCTAACTGTTC+GGG 0.338826 tig0015628:+37152 Msa1356410:three_prime_UTR
CTTGAGCTTCTGTTTCATAA+AGG 0.341200 tig0015628:+34506 Msa1356410:CDS
CCGATTGCCCGAACAGTTAG+AGG 0.350058 tig0015628:-37159 None:intergenic
ATGAGATAAAGTTGGATAAC+TGG 0.353163 tig0015628:+32705 Msa1356410:five_prime_UTR
TAAATTATCCTCTAACTGTT+CGG 0.356443 tig0015628:+37151 Msa1356410:three_prime_UTR
TAGGATGGTGTTAAAGAAAC+TGG 0.357569 tig0015628:+33904 Msa1356410:intron
CTGCTTTCTGGAATGGCCTC+CGG 0.360539 tig0015628:+37074 Msa1356410:CDS
TGTAGCCTTTGAATCATCTT+GGG 0.385996 tig0015628:-34751 None:intergenic
AACAGAAGCTCAAGCAAATC+AGG 0.393602 tig0015628:-34497 None:intergenic
AGGATCTAAACTTCTGATTA+GGG 0.393965 tig0015628:+34683 Msa1356410:intron
GGAACCTCAGTTATGCATTA+CGG 0.394084 tig0015628:+33202 Msa1356410:CDS
TCAAGTTGATGATCATATAA+AGG 0.397407 tig0015628:+33990 Msa1356410:CDS
CCTCTAACTGTTCGGGCAAT+CGG 0.397648 tig0015628:+37159 Msa1356410:three_prime_UTR
GTTATGTTGTGTACAGAGTC+AGG 0.400000 tig0015628:+32793 Msa1356410:CDS
GGATGAAGGACAATAATAGA+TGG 0.415621 tig0015628:+37391 Msa1356410:three_prime_UTR
ACCTGCAATGCTCTTTGAAC+TGG 0.416492 tig0015628:-33769 None:intergenic
ATGTAGCCTTTGAATCATCT+TGG 0.427563 tig0015628:-34752 None:intergenic
GCCTCTTTCAAGAGCAAAGT+TGG 0.432159 tig0015628:-33014 None:intergenic
CATTGGTGTTTCCATGTGGA+AGG 0.435021 tig0015628:+35895 Msa1356410:CDS
GCCAACTTTGCTCTTGAAAG+AGG 0.436963 tig0015628:+33013 Msa1356410:CDS
ATTGAACTGCACACTTTCAT+GGG 0.441075 tig0015628:-35841 None:intergenic
ATTGTTTCAGTAGCAATGAT+AGG 0.444349 tig0015628:-33967 None:intergenic
AGGACTATAGTAGACACTTT+AGG 0.446568 tig0015628:-32875 None:intergenic
CGATAGATTGGCAAAAGGCT+AGG 0.448912 tig0015628:-33736 None:intergenic
AAGAAACCCGTTGTTCTGTT+GGG 0.452053 tig0015628:+32848 Msa1356410:CDS
TCGTTAATTGGCGAGTATAC+GGG 0.452708 tig0015628:+32626 Msa1356410:five_prime_UTR
ACTGTTCGTGCACTTGATGC+TGG 0.472791 tig0015628:+33943 Msa1356410:CDS
AATGCAGCTGCTTTCTGGAA+TGG 0.473723 tig0015628:+37067 Msa1356410:CDS
AAAGATAGCCATGATTCGTC+TGG 0.475467 tig0015628:-35626 None:intergenic
TTGCCTCTGTCTCTTCTAGC+GGG 0.476167 tig0015628:-32968 None:intergenic
TGCCATTAAACATTGGATGA+AGG 0.480128 tig0015628:+37377 Msa1356410:three_prime_UTR
GATGAAGGACAATAATAGAT+GGG 0.480843 tig0015628:+37392 Msa1356410:three_prime_UTR
AAATGGTCAGAATAAAACTT+TGG 0.487220 tig0015628:+35788 Msa1356410:CDS
AAAACTTTCACTCTCTCCCT+TGG 0.487513 tig0015628:+32991 Msa1356410:CDS
GAAGAAACCCGTTGTTCTGT+TGG 0.494064 tig0015628:+32847 Msa1356410:CDS
GGTGCGCCCAACAGAACAAC+GGG 0.495537 tig0015628:-32854 None:intergenic
TACGAAGAAGTCTAGAACAG+AGG 0.497903 tig0015628:+32743 Msa1356410:five_prime_UTR
GGAGCAGCACCACGATAGAT+TGG 0.499295 tig0015628:-33748 None:intergenic
AGAATCTTTGCTCTAGATCC+TGG 0.502056 tig0015628:-35753 None:intergenic
GTATTGGAACTTCAGCTCCC+TGG 0.503673 tig0015628:+37031 Msa1356410:CDS
AGGAATATCTAGAAATTTGG+TGG 0.508162 tig0015628:-33246 None:intergenic
TGCATTTGTCAATGGTGCAT+TGG 0.510008 tig0015628:+35878 Msa1356410:CDS
GAAGATCTATGAGATAAAGT+TGG 0.513725 tig0015628:+32697 Msa1356410:five_prime_UTR
TTCAAGAGCAAAGTTGGCCA+AGG 0.523928 tig0015628:-33008 None:intergenic
GGTGAGAAAGAAGAATGATT+CGG 0.528290 tig0015628:+32768 Msa1356410:exon
GATGATATTGCATTTGTCAA+TGG 0.537633 tig0015628:+35870 Msa1356410:CDS
AGATAGGTCCAGACGAATCA+TGG 0.540771 tig0015628:+35618 Msa1356410:intron
AGATGATTCAAAGGCTACAT+TGG 0.545534 tig0015628:+34755 Msa1356410:CDS
GATAGATTGGCAAAAGGCTA+GGG 0.546057 tig0015628:-33735 None:intergenic
CACCACGATAGATTGGCAAA+AGG 0.549477 tig0015628:-33741 None:intergenic
ACGAAGAAGTCTAGAACAGA+GGG 0.551974 tig0015628:+32744 Msa1356410:five_prime_UTR
GGGTTTCTTCTTGTTTGTTG+TGG 0.552904 tig0015628:-32834 None:intergenic
GTGCTGTTTGCTACGTCCGT+AGG 0.554151 tig0015628:+37415 Msa1356410:three_prime_UTR
TTTGCCTCTGTCTCTTCTAG+CGG 0.558300 tig0015628:-32969 None:intergenic
TATTTGTTGCCATTAAACAT+TGG 0.559518 tig0015628:+37370 Msa1356410:three_prime_UTR
GACAATAGCAGCAACTTCAA+AGG 0.572515 tig0015628:-32936 None:intergenic
TTGGTGTTTCCATGTGGAAG+GGG 0.572569 tig0015628:+35897 Msa1356410:CDS
AAAGGCTACATTGGCACCAA+AGG 0.579198 tig0015628:+34764 Msa1356410:CDS
TGTTGTGGTGAAAGTAGAAG+TGG 0.580279 tig0015628:-32819 None:intergenic
GGAATATCTAGAAATTTGGT+GGG 0.580845 tig0015628:-33245 None:intergenic
GTAGCCTTTGAATCATCTTG+GGG 0.594795 tig0015628:-34750 None:intergenic
TCAGTCCTCACAAACTCCTA+CGG 0.597750 tig0015628:-37431 None:intergenic
AGAATGTGGAGAAGCAGAAG+CGG 0.597855 tig0015628:-32912 None:intergenic
TTATGTTGTGTACAGAGTCA+GGG 0.600743 tig0015628:+32794 Msa1356410:CDS
CCTCTGTCTCTTCTAGCGGG+TGG 0.601967 tig0015628:-32965 None:intergenic
GTGGCAATTCAAACTTTCAA+CGG 0.603643 tig0015628:-32669 None:intergenic
AGGTGCGCCCAACAGAACAA+CGG 0.613937 tig0015628:-32855 None:intergenic
GCAACTTCAAAGGAAGAATG+TGG 0.614138 tig0015628:-32926 None:intergenic
TCAAGAGCAAAGTTGGCCAA+GGG 0.614517 tig0015628:-33007 None:intergenic
AGATAAAGTTGGATAACTGG+AGG 0.616731 tig0015628:+32708 Msa1356410:five_prime_UTR
GCTTTCTGGAATGGCCTCCG+GGG 0.620892 tig0015628:+37076 Msa1356410:CDS
ACAACCCCAAGATGATTCAA+AGG 0.621667 tig0015628:+34746 Msa1356410:CDS
ATTACATCTCCAGCACGTTG+AGG 0.625495 tig0015628:-33061 None:intergenic
ATTGGTGTTTCCATGTGGAA+GGG 0.627647 tig0015628:+35896 Msa1356410:CDS
TACGTCCGTAGGAGTTTGTG+AGG 0.631350 tig0015628:+37426 Msa1356410:three_prime_UTR
GATAAAGTTGGATAACTGGA+GGG 0.635358 tig0015628:+32709 Msa1356410:five_prime_UTR
AAGAAGTCTAGAACAGAGGG+AGG 0.637153 tig0015628:+32747 Msa1356410:five_prime_UTR
AGTGTGGTTCCCCTTCCACA+TGG 0.637310 tig0015628:-35906 None:intergenic
ATGAATGACTAACCAGAAGG+AGG 0.654381 tig0015628:-33266 None:intergenic
AACTACACATACCTCGAGTG+TGG 0.665523 tig0015628:-35922 None:intergenic
CCACCCGCTAGAAGAGACAG+AGG 0.670796 tig0015628:+32965 Msa1356410:CDS
GCTGAAGAAAATATGAGCGG+CGG 0.677292 tig0015628:+37105 Msa1356410:exon
TCTCATAGATCTTCAACACG+TGG 0.678085 tig0015628:-32688 None:intergenic
TCTTCAGCTTCTGTCCCCGG+AGG 0.683016 tig0015628:-37090 None:intergenic
TGGAAGGGGAACCACACTCG+AGG 0.687673 tig0015628:+35911 Msa1356410:CDS
ATGAAGGACAATAATAGATG+GGG 0.688313 tig0015628:+37393 Msa1356410:three_prime_UTR
GGTGCATTGGTGTTTCCATG+TGG 0.689928 tig0015628:+35891 Msa1356410:CDS
GAGAAAGAAGAATGATTCGG+CGG 0.701222 tig0015628:+32771 Msa1356410:exon
GAAGCTGAAGAAAATATGAG+CGG 0.725162 tig0015628:+37102 Msa1356410:exon
GCAGCCGTAATGCATAACTG+AGG 0.749183 tig0015628:-33206 None:intergenic
AAGCGGTGAGAAGTGCATCG+AGG 0.761991 tig0015628:-32895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTATTAATTTATTTGTT+TGG + tig0015628:33352-33371 Msa1356410:intron 10.0%
!! AAAATTCATTAATAAAATCA+CGG - tig0015628:34106-34125 None:intergenic 10.0%
!! AATAAAAAAAATCTTGAAAT+TGG + tig0015628:35445-35464 Msa1356410:intron 10.0%
!! ATAAAAAAAATCTTGAAATT+GGG + tig0015628:35446-35465 Msa1356410:intron 10.0%
!! ATAAAAATATGATTAATATC+CGG - tig0015628:37251-37270 None:intergenic 10.0%
!!! TATTTTATTTAACCATTCAA+TGG + tig0015628:33455-33474 Msa1356410:intron 15.0%
!! AAAAGATAAATTAACATTCA+TGG - tig0015628:34546-34565 None:intergenic 15.0%
!! GAACTAATAATAATATCAAT+AGG - tig0015628:34836-34855 None:intergenic 15.0%
!! AGTGTTCAAAAAAAAAAAAA+AGG + tig0015628:35374-35393 Msa1356410:intron 15.0%
!! TAAAAAAAATCTTGAAATTG+GGG + tig0015628:35447-35466 Msa1356410:intron 15.0%
!! TTAGATAATAAGATTGTATT+TGG - tig0015628:36329-36348 None:intergenic 15.0%
!! GTTAATTGCAAAAATAAATT+TGG + tig0015628:36485-36504 Msa1356410:intron 15.0%
!!! TAATGATTTTTAAAAGCAAA+TGG - tig0015628:36548-36567 None:intergenic 15.0%
!! AAACTAATGTAAAATACAAA+TGG + tig0015628:36809-36828 Msa1356410:intron 15.0%
!! ATTTATTTGTTTGGATTGTT+TGG + tig0015628:33361-33380 Msa1356410:intron 20.0%
!! AGTAGTATAAGTAAAACATA+TGG + tig0015628:33658-33677 Msa1356410:intron 20.0%
!! AAAAAAAACAATCTTCAAAC+TGG + tig0015628:34134-34153 Msa1356410:intron 20.0%
!!! TCCAGTTTTTTTTTTTTGAA+GGG - tig0015628:34170-34189 None:intergenic 20.0%
!!! TTCCAGTTTTTTTTTTTTGA+AGG - tig0015628:34171-34190 None:intergenic 20.0%
!! GATTGTCTTAATAATATCTT+AGG + tig0015628:34262-34281 Msa1356410:intron 20.0%
!! AGTAAATATGAAATAGCATT+GGG - tig0015628:34888-34907 None:intergenic 20.0%
!! AAGTAAATATGAAATAGCAT+TGG - tig0015628:34889-34908 None:intergenic 20.0%
!!! GCTATTTCATATTTACTTTT+AGG + tig0015628:34891-34910 Msa1356410:intron 20.0%
!! AACCAAAATGAAAAAGAAAA+TGG - tig0015628:36134-36153 None:intergenic 20.0%
!! TCGGTAAATCTAAAAAATTT+GGG + tig0015628:36205-36224 Msa1356410:intron 20.0%
!!! TTTTTCCTAAAAAATGTTTG+GGG - tig0015628:36416-36435 None:intergenic 20.0%
!!! CTTTTTCCTAAAAAATGTTT+GGG - tig0015628:36417-36436 None:intergenic 20.0%
!!! TCTTTTTCCTAAAAAATGTT+TGG - tig0015628:36418-36437 None:intergenic 20.0%
!!! AAGTACTAATACTATACTTT+TGG - tig0015628:36595-36614 None:intergenic 20.0%
!!! TCAAGTTTTTCATTTTTCTT+CGG + tig0015628:37209-37228 Msa1356410:three_prime_UTR 20.0%
! CTTATCAGATTTAAAAGCTT+TGG + tig0015628:33181-33200 Msa1356410:CDS 25.0%
!!! TTGGTTAATTGATTTGTGTT+TGG + tig0015628:33312-33331 Msa1356410:intron 25.0%
! TTACTTAATTGTCCATTGAA+TGG - tig0015628:33470-33489 None:intergenic 25.0%
! TTGCTTCTCTCTAAATAATT+AGG + tig0015628:33568-33587 Msa1356410:intron 25.0%
! GTATAAGTAAAACATATGGA+TGG + tig0015628:33662-33681 Msa1356410:intron 25.0%
!!! TTGACTTGTATTTGTATACT+AGG + tig0015628:33885-33904 Msa1356410:intron 25.0%
!!! TCAAGTTGATGATCATATAA+AGG + tig0015628:33990-34009 Msa1356410:CDS 25.0%
! ACCCTTCAAAAAAAAAAAAC+TGG + tig0015628:34166-34185 Msa1356410:intron 25.0%
!!! CTCAGAAATAAAAAAGTATC+TGG - tig0015628:34307-34326 None:intergenic 25.0%
!!! GTATCTAAAGATTTGTTAGA+AGG - tig0015628:34462-34481 None:intergenic 25.0%
! CTTTAGATACCTATATATGT+AGG + tig0015628:34472-34491 Msa1356410:intron 25.0%
! CACTAGGATAAAAGATTATA+AGG - tig0015628:34574-34593 None:intergenic 25.0%
!! ATATCTTTATTTGACAAAGC+AGG + tig0015628:34663-34682 Msa1356410:intron 25.0%
!!! TTTTGATTATGTTACTCAGA+AGG + tig0015628:34796-34815 Msa1356410:intron 25.0%
! TTTGATTATGTTACTCAGAA+GGG + tig0015628:34797-34816 Msa1356410:intron 25.0%
! TTTATGAATGATTGTCTCAA+AGG - tig0015628:35002-35021 None:intergenic 25.0%
! AATCATTCATAAACCACATT+TGG + tig0015628:35009-35028 Msa1356410:intron 25.0%
! AAATAAAAGTAAGCCAAATG+TGG - tig0015628:35025-35044 None:intergenic 25.0%
!!! TACAAGTTTTGTTAGGAATA+TGG - tig0015628:35054-35073 None:intergenic 25.0%
!!! TCTCATTTACAAGTTTTGTT+AGG - tig0015628:35061-35080 None:intergenic 25.0%
! ATTATATCGTAATTCATGCT+AGG + tig0015628:35134-35153 Msa1356410:intron 25.0%
!!! CTTTTTTCTTTATAGGAAGT+AGG - tig0015628:35186-35205 None:intergenic 25.0%
!!! ATTTTTTGCTGATAAGAGAA+TGG + tig0015628:35348-35367 Msa1356410:intron 25.0%
!!! TTTTTTGCTGATAAGAGAAT+GGG + tig0015628:35349-35368 Msa1356410:intron 25.0%
!! TTTTATTACTCCTCAAAACT+AGG - tig0015628:35432-35451 None:intergenic 25.0%
! GTAGATAACAGGATATAAAA+TGG - tig0015628:35503-35522 None:intergenic 25.0%
! TATATCCTGTTATCTACATA+AGG + tig0015628:35506-35525 Msa1356410:intron 25.0%
!! TTTTTCCTTATGTAGATAAC+AGG - tig0015628:35514-35533 None:intergenic 25.0%
! AATTTATCAACTGTGTATAG+TGG - tig0015628:35550-35569 None:intergenic 25.0%
! GATAAATTATGTTCCTTACA+AGG + tig0015628:35562-35581 Msa1356410:intron 25.0%
! TCATGAAGTTTACCTTATTA+TGG - tig0015628:35673-35692 None:intergenic 25.0%
! AAATGGTCAGAATAAAACTT+TGG + tig0015628:35788-35807 Msa1356410:CDS 25.0%
!!! TGCCATTTTCTTTTTCATTT+TGG + tig0015628:36129-36148 Msa1356410:intron 25.0%
! GTCGGTAAATCTAAAAAATT+TGG + tig0015628:36204-36223 Msa1356410:intron 25.0%
! TATCAAAAATAGAACCAAAC+AGG - tig0015628:36302-36321 None:intergenic 25.0%
! ATTAACAAGAAACATTCCAT+TGG - tig0015628:36471-36490 None:intergenic 25.0%
!! CAAAAATAAATTTGGTTCCA+AGG + tig0015628:36493-36512 Msa1356410:intron 25.0%
! TCATTGTAAACAGTAATTCT+AGG + tig0015628:36569-36588 Msa1356410:intron 25.0%
! ATGTAAAATACAAATGGTGT+TGG + tig0015628:36815-36834 Msa1356410:intron 25.0%
! AAATCTGTAATATATCAAGC+AGG + tig0015628:36925-36944 Msa1356410:intron 25.0%
! TAAATTATCCTCTAACTGTT+CGG + tig0015628:37151-37170 Msa1356410:three_prime_UTR 25.0%
!!! AAAGTAAAGTTCTGAAGTTT+TGG + tig0015628:37325-37344 Msa1356410:three_prime_UTR 25.0%
!! TATTTGTTGCCATTAAACAT+TGG + tig0015628:37370-37389 Msa1356410:three_prime_UTR 25.0%
GAAGATCTATGAGATAAAGT+TGG + tig0015628:32697-32716 Msa1356410:five_prime_UTR 30.0%
ATGAGATAAAGTTGGATAAC+TGG + tig0015628:32705-32724 Msa1356410:five_prime_UTR 30.0%
GGAATATCTAGAAATTTGGT+GGG - tig0015628:33248-33267 None:intergenic 30.0%
AGGAATATCTAGAAATTTGG+TGG - tig0015628:33249-33268 None:intergenic 30.0%
AGGAGGAATATCTAGAAATT+TGG - tig0015628:33252-33271 None:intergenic 30.0%
TTTGTGTTTGGATACATTGA+CGG + tig0015628:33324-33343 Msa1356410:intron 30.0%
! ACTTTATCTGAAATCATCTC+AGG + tig0015628:33697-33716 Msa1356410:intron 30.0%
AAATAAGCTAGTGAAACGAA+AGG - tig0015628:33846-33865 None:intergenic 30.0%
CTTGTATTTGTATACTAGGA+TGG + tig0015628:33889-33908 Msa1356410:intron 30.0%
ATTGTTTCAGTAGCAATGAT+AGG - tig0015628:33970-33989 None:intergenic 30.0%
! TCTGTTTGCTACAAAGTAAA+AGG + tig0015628:34030-34049 Msa1356410:intron 30.0%
AAAAACTGGAATGTTTCAAC+TGG + tig0015628:34180-34199 Msa1356410:intron 30.0%
!! CTAAAGATTTGTTAGAAGGA+GGG - tig0015628:34458-34477 None:intergenic 30.0%
!! TCTAAAGATTTGTTAGAAGG+AGG - tig0015628:34459-34478 None:intergenic 30.0%
CTGAATAAGAAAAGCTCTTA+GGG - tig0015628:34600-34619 None:intergenic 30.0%
TCTGAATAAGAAAAGCTCTT+AGG - tig0015628:34601-34620 None:intergenic 30.0%
AACAATGACTTTCTATCAGA+AGG - tig0015628:34631-34650 None:intergenic 30.0%
AGGATCTAAACTTCTGATTA+GGG + tig0015628:34683-34702 Msa1356410:intron 30.0%
!! TATTTCTGAAACCATAGTGA+TGG + tig0015628:34923-34942 Msa1356410:intron 30.0%
!!! AAGTTTTGTTAGGAATATGG+AGG - tig0015628:35051-35070 None:intergenic 30.0%
!!! AGTGAGGCTTTTTTCTTTAT+AGG - tig0015628:35193-35212 None:intergenic 30.0%
CTCACTGTGCAAAAAATAAA+CGG + tig0015628:35207-35226 Msa1356410:intron 30.0%
CTAATATGTACCTTATTAGG+AGG - tig0015628:35256-35275 None:intergenic 30.0%
CTCCTAATAAGGTACATATT+AGG + tig0015628:35254-35273 Msa1356410:intron 30.0%
CACCTAATATGTACCTTATT+AGG - tig0015628:35259-35278 None:intergenic 30.0%
TAAAATGGAGTGAGCATAAA+AGG - tig0015628:35488-35507 None:intergenic 30.0%
ATTATGTTCCTTACAAGGAA+TGG + tig0015628:35567-35586 Msa1356410:intron 30.0%
AATAAGATCCATTCCTTGTA+AGG - tig0015628:35578-35597 None:intergenic 30.0%
!! ACAAGGAATGGATCTTATTT+TGG + tig0015628:35579-35598 Msa1356410:intron 30.0%
!!! TTTTGCTACTTTATGCAGAT+AGG + tig0015628:35602-35621 Msa1356410:intron 30.0%
ATTCTTGTAGCTGACAAAAA+TGG + tig0015628:35771-35790 Msa1356410:CDS 30.0%
GATGATATTGCATTTGTCAA+TGG + tig0015628:35870-35889 Msa1356410:CDS 30.0%
! TTTTCAGAGTAGTTCTCTTT+CGG - tig0015628:36095-36114 None:intergenic 30.0%
CTGAAGAATCTTATCAGTAT+AGG - tig0015628:36183-36202 None:intergenic 30.0%
! TGCATGAGCTTTGTAAATAA+AGG + tig0015628:36722-36741 Msa1356410:intron 30.0%
! GCATGAGCTTTGTAAATAAA+GGG + tig0015628:36723-36742 Msa1356410:intron 30.0%
ATTTAGTGATGTTGTAACTC+AGG + tig0015628:37009-37028 Msa1356410:intron 30.0%
AAATTATCCTCTAACTGTTC+GGG + tig0015628:37152-37171 Msa1356410:three_prime_UTR 30.0%
!! CGGTCATTTTAAATGATTTC+CGG + tig0015628:37229-37248 Msa1356410:three_prime_UTR 30.0%
GATGAAGGACAATAATAGAT+GGG + tig0015628:37392-37411 Msa1356410:three_prime_UTR 30.0%
ATGAAGGACAATAATAGATG+GGG + tig0015628:37393-37412 Msa1356410:three_prime_UTR 30.0%
ATCGTTAATTGGCGAGTATA+CGG + tig0015628:32625-32644 Msa1356410:five_prime_UTR 35.0%
GTGGCAATTCAAACTTTCAA+CGG - tig0015628:32672-32691 None:intergenic 35.0%
AGATAAAGTTGGATAACTGG+AGG + tig0015628:32708-32727 Msa1356410:five_prime_UTR 35.0%
GATAAAGTTGGATAACTGGA+GGG + tig0015628:32709-32728 Msa1356410:five_prime_UTR 35.0%
GGTGAGAAAGAAGAATGATT+CGG + tig0015628:32768-32787 Msa1356410:exon 35.0%
TTATGTTGTGTACAGAGTCA+GGG + tig0015628:32794-32813 Msa1356410:CDS 35.0%
AGGACTATAGTAGACACTTT+AGG - tig0015628:32878-32897 None:intergenic 35.0%
TCTATTCATTTCTTGCTTGC+AGG + tig0015628:33151-33170 Msa1356410:intron 35.0%
TTTCTAGATATTCCTCCTTC+TGG + tig0015628:33254-33273 Msa1356410:CDS 35.0%
TGAATGAATGACTAACCAGA+AGG - tig0015628:33272-33291 None:intergenic 35.0%
! TCTTCTTATCGCTGTGTTTT+TGG + tig0015628:33293-33312 Msa1356410:intron 35.0%
ACACCAATTTGTAGCTTCTA+CGG - tig0015628:33540-33559 None:intergenic 35.0%
AGGTAAAAATGAGTCTTGAG+AGG + tig0015628:33588-33607 Msa1356410:intron 35.0%
ATACTACTAAGCCGATGTTT+GGG - tig0015628:33646-33665 None:intergenic 35.0%
TATACTACTAAGCCGATGTT+TGG - tig0015628:33647-33666 None:intergenic 35.0%
AAGCATACAAACGTTAGAAG+TGG - tig0015628:33818-33837 None:intergenic 35.0%
! TAGGATGGTGTTAAAGAAAC+TGG + tig0015628:33904-33923 Msa1356410:intron 35.0%
TTGCTACAAAGTAAAAGGTC+TGG + tig0015628:34035-34054 Msa1356410:intron 35.0%
TGCTACAAAGTAAAAGGTCT+GGG + tig0015628:34036-34055 Msa1356410:intron 35.0%
TACTGCTGCATATTATGTTG+AGG + tig0015628:34226-34245 Msa1356410:intron 35.0%
ACTGCTGCATATTATGTTGA+GGG + tig0015628:34227-34246 Msa1356410:intron 35.0%
AGATCATGTATATGCAAAGC+CGG + tig0015628:34325-34344 Msa1356410:intron 35.0%
ATGAAAACACACACATACAC+CGG - tig0015628:34347-34366 None:intergenic 35.0%
ATGTTTCACTCGGTCATTAT+AGG + tig0015628:34374-34393 Msa1356410:intron 35.0%
AATCAGGTGCCTACATATAT+AGG - tig0015628:34484-34503 None:intergenic 35.0%
CTTGAGCTTCTGTTTCATAA+AGG + tig0015628:34506-34525 Msa1356410:CDS 35.0%
CAGGATCTAAACTTCTGATT+AGG + tig0015628:34682-34701 Msa1356410:intron 35.0%
!! GAACTTCCATCCATTTTTGA+TGG + tig0015628:34705-34724 Msa1356410:CDS 35.0%
TCTAGCTGATCCATCAAAAA+TGG - tig0015628:34718-34737 None:intergenic 35.0%
TGTAGCCTTTGAATCATCTT+GGG - tig0015628:34754-34773 None:intergenic 35.0%
ATGTAGCCTTTGAATCATCT+TGG - tig0015628:34755-34774 None:intergenic 35.0%
AGATGATTCAAAGGCTACAT+TGG + tig0015628:34755-34774 Msa1356410:CDS 35.0%
ATCAAAACCAACACTACCTT+TGG - tig0015628:34783-34802 None:intergenic 35.0%
ATTATCGTCATGCAAAGAGA+TGG - tig0015628:34972-34991 None:intergenic 35.0%
GAGATGAAAAGTAGTACATC+AGG + tig0015628:35088-35107 Msa1356410:intron 35.0%
TCTTTATAGGAAGTAGGACT+GGG - tig0015628:35180-35199 None:intergenic 35.0%
TTCTTTATAGGAAGTAGGAC+TGG - tig0015628:35181-35200 None:intergenic 35.0%
!!! CGTTTATTTTTTGCACAGTG+AGG - tig0015628:35209-35228 None:intergenic 35.0%
CTTGAACTTATTGCTTGTGT+TGG + tig0015628:35325-35344 Msa1356410:intron 35.0%
!!! AACATTGAGTCCTAGTTTTG+AGG + tig0015628:35419-35438 Msa1356410:intron 35.0%
AGCATCTGTTCTCCATAATA+AGG + tig0015628:35658-35677 Msa1356410:CDS 35.0%
! AGCTGTGACACAACAATTTT+AGG + tig0015628:35710-35729 Msa1356410:intron 35.0%
!!! TTTTAGGTTCGTGCATTTTC+AGG + tig0015628:35726-35745 Msa1356410:intron 35.0%
!! TTTAGGTTCGTGCATTTTCA+GGG + tig0015628:35727-35746 Msa1356410:intron 35.0%
ATTGAACTGCACACTTTCAT+GGG - tig0015628:35844-35863 None:intergenic 35.0%
TGAAGTTTCAGTTATCACTG+CGG + tig0015628:35959-35978 Msa1356410:intron 35.0%
!! CTAGAAATTGGCTTGGTATA+CGG - tig0015628:36052-36071 None:intergenic 35.0%
! CATAGATTGGTCCTAGAAAT+TGG - tig0015628:36064-36083 None:intergenic 35.0%
!! TTCTAGGACCAATCTATGTT+AGG + tig0015628:36066-36085 Msa1356410:intron 35.0%
TTCGGTTTCCTAACATAGAT+TGG - tig0015628:36077-36096 None:intergenic 35.0%
CTGATAAGATTCTTCAGTGT+CGG + tig0015628:36186-36205 Msa1356410:intron 35.0%
TTGCTCTATTCTGTTCTCTT+TGG + tig0015628:36247-36266 Msa1356410:intron 35.0%
CAAAAGGTAGGCATCTAAAA+TGG - tig0015628:36278-36297 None:intergenic 35.0%
ATAGAACCAAACAGGACAAA+AGG - tig0015628:36294-36313 None:intergenic 35.0%
TCACATACTAACAAGATCCA+TGG - tig0015628:36379-36398 None:intergenic 35.0%
!!! CTTTGCCCCAAACATTTTTT+AGG + tig0015628:36408-36427 Msa1356410:intron 35.0%
AAGATTTCCTTCCAAGTTAG+AGG + tig0015628:36434-36453 Msa1356410:intron 35.0%
CACAGTGATTTCAGTTACAT+TGG - tig0015628:36690-36709 None:intergenic 35.0%
ATCGGAGAAAAGAACAAGAA+GGG - tig0015628:36754-36773 None:intergenic 35.0%
AATCGGAGAAAAGAACAAGA+AGG - tig0015628:36755-36774 None:intergenic 35.0%
TCAATTTCAAGATGTAACCC+AGG - tig0015628:36790-36809 None:intergenic 35.0%
! AATACAAATGGTGTTGGACA+AGG + tig0015628:36821-36840 Msa1356410:intron 35.0%
AAGTGTGTGCATTCACAATT+TGG - tig0015628:36866-36885 None:intergenic 35.0%
TGATGTTGTAACTCAGGTAT+TGG + tig0015628:37015-37034 Msa1356410:intron 35.0%
GAAGCTGAAGAAAATATGAG+CGG + tig0015628:37102-37121 Msa1356410:exon 35.0%
TGCCATTAAACATTGGATGA+AGG + tig0015628:37377-37396 Msa1356410:three_prime_UTR 35.0%
GTCCTTCATCCAATGTTTAA+TGG - tig0015628:37382-37401 None:intergenic 35.0%
GGATGAAGGACAATAATAGA+TGG + tig0015628:37391-37410 Msa1356410:three_prime_UTR 35.0%
TCGTTAATTGGCGAGTATAC+GGG + tig0015628:32626-32645 Msa1356410:five_prime_UTR 40.0%
TCTCATAGATCTTCAACACG+TGG - tig0015628:32691-32710 None:intergenic 40.0%
! TACGAAGAAGTCTAGAACAG+AGG + tig0015628:32743-32762 Msa1356410:five_prime_UTR 40.0%
! ACGAAGAAGTCTAGAACAGA+GGG + tig0015628:32744-32763 Msa1356410:five_prime_UTR 40.0%
! GAGAAAGAAGAATGATTCGG+CGG + tig0015628:32771-32790 Msa1356410:exon 40.0%
GTTATGTTGTGTACAGAGTC+AGG + tig0015628:32793-32812 Msa1356410:CDS 40.0%
TGTTGTGGTGAAAGTAGAAG+TGG - tig0015628:32822-32841 None:intergenic 40.0%
! GGGTTTCTTCTTGTTTGTTG+TGG - tig0015628:32837-32856 None:intergenic 40.0%
AAGAAACCCGTTGTTCTGTT+GGG + tig0015628:32848-32867 Msa1356410:CDS 40.0%
GCAACTTCAAAGGAAGAATG+TGG - tig0015628:32929-32948 None:intergenic 40.0%
GACAATAGCAGCAACTTCAA+AGG - tig0015628:32939-32958 None:intergenic 40.0%
AAAACTTTCACTCTCTCCCT+TGG + tig0015628:32991-33010 Msa1356410:CDS 40.0%
GGAACCTCAGTTATGCATTA+CGG + tig0015628:33202-33221 Msa1356410:CDS 40.0%
TTATGCATTACGGCTGCTTA+TGG + tig0015628:33212-33231 Msa1356410:CDS 40.0%
ATGAATGACTAACCAGAAGG+AGG - tig0015628:33269-33288 None:intergenic 40.0%
TTGCCGTAGAAGCTACAAAT+TGG + tig0015628:33534-33553 Msa1356410:intron 40.0%
! GTGCTTTTGTGGATGCAAAT+TGG + tig0015628:33618-33637 Msa1356410:intron 40.0%
GATAGATTGGCAAAAGGCTA+GGG - tig0015628:33738-33757 None:intergenic 40.0%
TGGCATGAGATGAAGGAAAA+CGG - tig0015628:33798-33817 None:intergenic 40.0%
TTAGAAGTGGCATGAGATGA+AGG - tig0015628:33805-33824 None:intergenic 40.0%
GCTACAAAGTAAAAGGTCTG+GGG + tig0015628:34037-34056 Msa1356410:intron 40.0%
CTACAAAGTAAAAGGTCTGG+GGG + tig0015628:34038-34057 Msa1356410:intron 40.0%
AACTGGAATGTTTCAACTGG+TGG + tig0015628:34183-34202 Msa1356410:intron 40.0%
CATAGCTGTCATGTTTCACT+CGG + tig0015628:34364-34383 Msa1356410:intron 40.0%
AACAGAAGCTCAAGCAAATC+AGG - tig0015628:34500-34519 None:intergenic 40.0%
AAAGCTCTTAGGGTAACACT+AGG - tig0015628:34590-34609 None:intergenic 40.0%
GCTGATCCATCAAAAATGGA+TGG - tig0015628:34714-34733 None:intergenic 40.0%
ACAACCCCAAGATGATTCAA+AGG + tig0015628:34746-34765 Msa1356410:CDS 40.0%
GTAGCCTTTGAATCATCTTG+GGG - tig0015628:34753-34772 None:intergenic 40.0%
!! GCATTTTTGAGCCATCACTA+TGG - tig0015628:34937-34956 None:intergenic 40.0%
GATGGCTCAAAAATGCAACA+AGG + tig0015628:34941-34960 Msa1356410:intron 40.0%
TCGTAATTCATGCTAGGAAG+TGG + tig0015628:35140-35159 Msa1356410:intron 40.0%
CGTAATTCATGCTAGGAAGT+GGG + tig0015628:35141-35160 Msa1356410:intron 40.0%
GTAATTCATGCTAGGAAGTG+GGG + tig0015628:35142-35161 Msa1356410:intron 40.0%
TCAGAACACACCTCCTAATA+AGG + tig0015628:35243-35262 Msa1356410:intron 40.0%
TATTAGGTGCAAGAGCTGTA+AGG + tig0015628:35270-35289 Msa1356410:intron 40.0%
AAAGATAGCCATGATTCGTC+TGG - tig0015628:35629-35648 None:intergenic 40.0%
! AGAATCTTTGCTCTAGATCC+TGG - tig0015628:35756-35775 None:intergenic 40.0%
CATTGAACTGCACACTTTCA+TGG - tig0015628:35845-35864 None:intergenic 40.0%
TGCATTTGTCAATGGTGCAT+TGG + tig0015628:35878-35897 Msa1356410:CDS 40.0%
! ATTGGTGTTTCCATGTGGAA+GGG + tig0015628:35896-35915 Msa1356410:CDS 40.0%
CTACCAGAAAACACTTGTCT+AGG - tig0015628:36006-36025 None:intergenic 40.0%
!! AGACAAGTGTTTTCTGGTAG+AGG + tig0015628:36006-36025 Msa1356410:intron 40.0%
!! GACAAGTGTTTTCTGGTAGA+GGG + tig0015628:36007-36026 Msa1356410:intron 40.0%
CGTATACCAAGCCAATTTCT+AGG + tig0015628:36050-36069 Msa1356410:intron 40.0%
ATTGGTCCTAGAAATTGGCT+TGG - tig0015628:36059-36078 None:intergenic 40.0%
TCAGTATAGGAACAAGCAAG+AGG - tig0015628:36170-36189 None:intergenic 40.0%
AACCAAACAGGACAAAAGGT+AGG - tig0015628:36290-36309 None:intergenic 40.0%
ATTTCCTTCCAAGTTAGAGG+TGG + tig0015628:36437-36456 Msa1356410:intron 40.0%
ATTTCCACCTCTAACTTGGA+AGG - tig0015628:36444-36463 None:intergenic 40.0%
TCTCATTTCCACCTCTAACT+TGG - tig0015628:36448-36467 None:intergenic 40.0%
!! TAACAGTCAAAAGAGCACCT+TGG - tig0015628:36513-36532 None:intergenic 40.0%
! AAGAAGTCTAGAACAGAGGG+AGG + tig0015628:32747-32766 Msa1356410:five_prime_UTR 45.0%
GAAGAAACCCGTTGTTCTGT+TGG + tig0015628:32847-32866 Msa1356410:CDS 45.0%
AGAATGTGGAGAAGCAGAAG+CGG - tig0015628:32915-32934 None:intergenic 45.0%
TTTGCCTCTGTCTCTTCTAG+CGG - tig0015628:32972-32991 None:intergenic 45.0%
TCAAGAGCAAAGTTGGCCAA+GGG - tig0015628:33010-33029 None:intergenic 45.0%
TTCAAGAGCAAAGTTGGCCA+AGG - tig0015628:33011-33030 None:intergenic 45.0%
GCCAACTTTGCTCTTGAAAG+AGG + tig0015628:33013-33032 Msa1356410:CDS 45.0%
GCCTCTTTCAAGAGCAAAGT+TGG - tig0015628:33017-33036 None:intergenic 45.0%
! ATTTTCACTCCTCAACGTGC+TGG + tig0015628:33052-33071 Msa1356410:CDS 45.0%
ATTACATCTCCAGCACGTTG+AGG - tig0015628:33064-33083 None:intergenic 45.0%
AGAGTGAGTGAGCGAGTAAT+TGG - tig0015628:33134-33153 None:intergenic 45.0%
!! GAGGTTTTGTCGTGCTTTTG+TGG + tig0015628:33607-33626 Msa1356410:intron 45.0%
GCAAATTGGCACCCAAACAT+CGG + tig0015628:33632-33651 Msa1356410:intron 45.0%
CGATAGATTGGCAAAAGGCT+AGG - tig0015628:33739-33758 None:intergenic 45.0%
! AGCCTTTTGCCAATCTATCG+TGG + tig0015628:33739-33758 Msa1356410:CDS 45.0%
CACCACGATAGATTGGCAAA+AGG - tig0015628:33744-33763 None:intergenic 45.0%
!! TCCAGTTCAAAGAGCATTGC+AGG + tig0015628:33768-33787 Msa1356410:CDS 45.0%
ACCTGCAATGCTCTTTGAAC+TGG - tig0015628:33772-33791 None:intergenic 45.0%
!! ACATGGCCTTTTCTTGGTGT+CGG + tig0015628:34062-34081 Msa1356410:intron 45.0%
! ATGAGAAGAGAGTGTGTGCA+AGG - tig0015628:34400-34419 None:intergenic 45.0%
GCACACACTCTCTTCTCATA+TGG + tig0015628:34401-34420 Msa1356410:intron 45.0%
AAAGGCTACATTGGCACCAA+AGG + tig0015628:34764-34783 Msa1356410:CDS 45.0%
ATTGGCACCAAAGGTAGTGT+TGG + tig0015628:34773-34792 Msa1356410:intron 45.0%
GCATTGGGCAAACACTATAG+AGG - tig0015628:34873-34892 None:intergenic 45.0%
AGATAGGTCCAGACGAATCA+TGG + tig0015628:35618-35637 Msa1356410:intron 45.0%
! CATTGGTGTTTCCATGTGGA+AGG + tig0015628:35895-35914 Msa1356410:CDS 45.0%
! TTGGTGTTTCCATGTGGAAG+GGG + tig0015628:35897-35916 Msa1356410:CDS 45.0%
AACTACACATACCTCGAGTG+TGG - tig0015628:35925-35944 None:intergenic 45.0%
! CTGCCTAGACAAGTGTTTTC+TGG + tig0015628:36000-36019 Msa1356410:intron 45.0%
!! TGTTTTCTGGTAGAGGGTAC+AGG + tig0015628:36013-36032 Msa1356410:intron 45.0%
! TGCCTACCTTTTGTCCTGTT+TGG + tig0015628:36285-36304 Msa1356410:intron 45.0%
AGAGGTGGAAATGAGACCAA+TGG + tig0015628:36452-36471 Msa1356410:intron 45.0%
! TCTTTTCTCCGATTGCTCTG+TGG + tig0015628:36761-36780 Msa1356410:intron 45.0%
ACTTCAGCTCCCTGGAAAAA+AGG + tig0015628:37039-37058 Msa1356410:CDS 45.0%
!!! CATTGACCGCCTTTTTTCCA+GGG - tig0015628:37051-37070 None:intergenic 45.0%
! AATGCAGCTGCTTTCTGGAA+TGG + tig0015628:37067-37086 Msa1356410:CDS 45.0%
! TTTTCTTCAGCTTCTGTCCC+CGG - tig0015628:37096-37115 None:intergenic 45.0%
GCTGAAGAAAATATGAGCGG+CGG + tig0015628:37105-37124 Msa1356410:exon 45.0%
TCAGTCCTCACAAACTCCTA+CGG - tig0015628:37434-37453 None:intergenic 45.0%
TTGCCTCTGTCTCTTCTAGC+GGG - tig0015628:32971-32990 None:intergenic 50.0%
GCAGCCGTAATGCATAACTG+AGG - tig0015628:33209-33228 None:intergenic 50.0%
ACTGTTCGTGCACTTGATGC+TGG + tig0015628:33943-33962 Msa1356410:CDS 50.0%
!! GTAGTGCCGACACCAAGAAA+AGG - tig0015628:34071-34090 None:intergenic 50.0%
GAAGTAGGACTGGGAACACA+AGG - tig0015628:35171-35190 None:intergenic 50.0%
!! AGGTTCGTGCATTTTCAGGG+TGG + tig0015628:35730-35749 Msa1356410:intron 50.0%
! GGTGCATTGGTGTTTCCATG+TGG + tig0015628:35891-35910 Msa1356410:CDS 50.0%
! AACAAGATCCATGGCGCTGA+AGG - tig0015628:36370-36389 None:intergenic 50.0%
CCAGGATTCCACAGAGCAAT+CGG - tig0015628:36772-36791 None:intergenic 50.0%
CGATTGCTCTGTGGAATCCT+GGG + tig0015628:36770-36789 Msa1356410:intron 50.0%
GACAAGGCGACAATGTCTTC+AGG + tig0015628:36837-36856 Msa1356410:intron 50.0%
GTATTGGAACTTCAGCTCCC+TGG + tig0015628:37031-37050 Msa1356410:CDS 50.0%
TCAGCTCCCTGGAAAAAAGG+CGG + tig0015628:37042-37061 Msa1356410:CDS 50.0%
!!! GCATTGACCGCCTTTTTTCC+AGG - tig0015628:37052-37071 None:intergenic 50.0%
CCTCTAACTGTTCGGGCAAT+CGG + tig0015628:37159-37178 Msa1356410:three_prime_UTR 50.0%
TACGTCCGTAGGAGTTTGTG+AGG + tig0015628:37426-37445 Msa1356410:three_prime_UTR 50.0%
AGGTGCGCCCAACAGAACAA+CGG - tig0015628:32858-32877 None:intergenic 55.0%
! AAGCGGTGAGAAGTGCATCG+AGG - tig0015628:32898-32917 None:intergenic 55.0%
GGAGCAGCACCACGATAGAT+TGG - tig0015628:33751-33770 None:intergenic 55.0%
! GTAAAAGGTCTGGGGGCACA+TGG + tig0015628:34045-34064 Msa1356410:intron 55.0%
TTCATGGGTGCAAACTCGCG+TGG - tig0015628:35829-35848 None:intergenic 55.0%
AGTGTGGTTCCCCTTCCACA+TGG - tig0015628:35909-35928 None:intergenic 55.0%
! CATGGCGCTGAAGGTAGCAT+CGG - tig0015628:36361-36380 None:intergenic 55.0%
CCGATTGCTCTGTGGAATCC+TGG + tig0015628:36769-36788 Msa1356410:intron 55.0%
! CGGTCAATGCAGCTGCTTTC+TGG + tig0015628:37062-37081 Msa1356410:CDS 55.0%
!! CTGCTTTCTGGAATGGCCTC+CGG + tig0015628:37074-37093 Msa1356410:CDS 55.0%
!! TGCTTTCTGGAATGGCCTCC+GGG + tig0015628:37075-37094 Msa1356410:CDS 55.0%
CCGATTGCCCGAACAGTTAG+AGG - tig0015628:37162-37181 None:intergenic 55.0%
!! GTGCTGTTTGCTACGTCCGT+AGG + tig0015628:37415-37434 Msa1356410:three_prime_UTR 55.0%
GGTGCGCCCAACAGAACAAC+GGG - tig0015628:32857-32876 None:intergenic 60.0%
CCTCTGTCTCTTCTAGCGGG+TGG - tig0015628:32968-32987 None:intergenic 60.0%
CCACCCGCTAGAAGAGACAG+AGG + tig0015628:32965-32984 Msa1356410:CDS 60.0%
!! GGGGGCACATGGCCTTTTCT+TGG + tig0015628:34056-34075 Msa1356410:intron 60.0%
!! CGTGCATTTTCAGGGTGGCC+AGG + tig0015628:35735-35754 Msa1356410:CDS 60.0%
TGGAAGGGGAACCACACTCG+AGG + tig0015628:35911-35930 Msa1356410:CDS 60.0%
! GCGCTGAAGGTAGCATCGGA+TGG - tig0015628:36357-36376 None:intergenic 60.0%
CGATGCTACCTTCAGCGCCA+TGG + tig0015628:36359-36378 Msa1356410:intron 60.0%
!! GCTTTCTGGAATGGCCTCCG+GGG + tig0015628:37076-37095 Msa1356410:CDS 60.0%
TCTTCAGCTTCTGTCCCCGG+AGG - tig0015628:37093-37112 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0015628 gene 32620 37468 32620 ID=Msa1356410;Name=Msa1356410
tig0015628 mRNA 32620 37468 32620 ID=Msa1356410-mRNA-1;Parent=Msa1356410;Name=Msa1356410-mRNA-1;_AED=0.23;_eAED=0.23;_QI=162|1|1|1|1|1|9|348|353
tig0015628 exon 32620 33078 32620 ID=Msa1356410-mRNA-1:exon:9893;Parent=Msa1356410-mRNA-1
tig0015628 exon 33173 33275 33173 ID=Msa1356410-mRNA-1:exon:9894;Parent=Msa1356410-mRNA-1
tig0015628 exon 33719 33789 33719 ID=Msa1356410-mRNA-1:exon:9895;Parent=Msa1356410-mRNA-1
tig0015628 exon 33907 34011 33907 ID=Msa1356410-mRNA-1:exon:9896;Parent=Msa1356410-mRNA-1
tig0015628 exon 34494 34527 34494 ID=Msa1356410-mRNA-1:exon:9897;Parent=Msa1356410-mRNA-1
tig0015628 exon 34685 34785 34685 ID=Msa1356410-mRNA-1:exon:9898;Parent=Msa1356410-mRNA-1
tig0015628 exon 35620 35679 35620 ID=Msa1356410-mRNA-1:exon:9899;Parent=Msa1356410-mRNA-1
tig0015628 exon 35732 35932 35732 ID=Msa1356410-mRNA-1:exon:9900;Parent=Msa1356410-mRNA-1
tig0015628 exon 37031 37468 37031 ID=Msa1356410-mRNA-1:exon:9901;Parent=Msa1356410-mRNA-1
tig0015628 five_prime_UTR 32620 32781 32620 ID=Msa1356410-mRNA-1:five_prime_utr;Parent=Msa1356410-mRNA-1
tig0015628 CDS 32782 33078 32782 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 33173 33275 33173 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 33719 33789 33719 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 33907 34011 33907 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 34494 34527 34494 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 34685 34785 34685 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 35620 35679 35620 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 35732 35932 35732 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 CDS 37031 37120 37031 ID=Msa1356410-mRNA-1:cds;Parent=Msa1356410-mRNA-1
tig0015628 three_prime_UTR 37121 37468 37121 ID=Msa1356410-mRNA-1:three_prime_utr;Parent=Msa1356410-mRNA-1
Gene Sequence

>Msa1356410

ATGATTCGGCGGTTATGTTGTGTACAGAGTCAGGGTTCCACTTCTACTTTCACCACAACAAACAAGAAGAAACCCGTTGTTCTGTTGGGCGCACCTAAAGTGTCTACTATAGTCCTCGATGCACTTCTCACCGCTTCTGCTTCTCCACATTCTTCCTTTGAAGTTGCTGCTATTGTCACTCAGCCACCCGCTAGAAGAGACAGAGGCAAAAAACTTTCACTCTCTCCCTTGGCCAACTTTGCTCTTGAAAGAGGCTTCTCTTCTCATCTTATTTTCACTCCTCAACGTGCTGGAGATGATACTTTCTTATCAGATTTAAAAGCTTTGGAACCTCAGTTATGCATTACGGCTGCTTATGGCAATATATTACCCACCAAATTTCTAGATATTCCTCCTTCTGGAACAGTCAACATTCACCCTAGCCTTTTGCCAATCTATCGTGGTGCTGCTCCAGTTCAAAGAGCATTGCAGGATGGTGTTAAAGAAACTGGAGTATCGTTAGCATTCACTGTTCGTGCACTTGATGCTGGTCCTATCATTGCTACTGAAACAATTCAAGTTGATGATCATATAAAGGCACCTGATTTGCTTGAGCTTCTGTTTCATAAAGGATCTAAACTTCTGATTAGGGAACTTCCATCCATTTTTGATGGATCAGCTAGAGCGAATGCACAACCCCAAGATGATTCAAAGGCTACATTGGCACCAAAGATAGGTCCAGACGAATCATGGCTATCTTTTGATCAAGAAGCATCTGTTCTCCATAATAAGGTTCGTGCATTTTCAGGGTGGCCAGGATCTAGAGCAAAGATTCTTGTAGCTGACAAAAATGGTCAGAATAAAACTTTGGAAATTAAAATCATAACCACGCGAGTTTGCACCCATGAAAGTGTGCAGTTCAATGAAGCAGATGATATTGCATTTGTCAATGGTGCATTGGTGTTTCCATGTGGAAGGGGAACCACACTCGAGGTATTGGAACTTCAGCTCCCTGGAAAAAAGGCGGTCAATGCAGCTGCTTTCTGGAATGGCCTCCGGGGACAGAAGCTGAAGAAAATATGA

Protein sequence

>Msa1356410

MIRRLCCVQSQGSTSTFTTTNKKKPVVLLGAPKVSTIVLDALLTASASPHSSFEVAAIVTQPPARRDRGKKLSLSPLANFALERGFSSHLIFTPQRAGDDTFLSDLKALEPQLCITAAYGNILPTKFLDIPPSGTVNIHPSLLPIYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPIIATETIQVDDHIKAPDLLELLFHKGSKLLIRELPSIFDGSARANAQPQDDSKATLAPKIGPDESWLSFDQEASVLHNKVRAFSGWPGSRAKILVADKNGQNKTLEIKIITTRVCTHESVQFNEADDIAFVNGALVFPCGRGTTLEVLELQLPGKKAVNAAAFWNGLRGQKLKKI*