AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470030 MtrunA17_Chr3g0077271 84.000 275 31 4 5 266 1 275 3.73e-159 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470030 AT4G24090.1 51.695 236 99 3 41 266 55 285 2.45e-68 214

Find 59 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCTCTTAAACACTTTA+AGG 0.074175 3_3:+72097343 Msa0470030:CDS
GATTTGAAGAACGCACTTTC+TGG 0.183220 3_3:+72097192 Msa0470030:CDS
GCCCTTGTTGGCACTTTGTC+AGG 0.205650 3_3:+72099049 Msa0470030:CDS
ATGATAATCGGAAAATTAAT+TGG 0.244930 3_3:-72099608 None:intergenic
TCCGATTATCATAGCGTAAA+TGG 0.252998 3_3:+72099619 Msa0470030:three_prime_UTR
GCATCTATCTCTGCCCTTGT+TGG 0.365023 3_3:+72099037 Msa0470030:CDS
TCCATTTACGCTATGATAAT+CGG 0.383249 3_3:-72099620 None:intergenic
TGATCGGGATGAAGAGAGAT+TGG 0.389359 3_3:+72099000 Msa0470030:CDS
TTCGTATGTTGTGCATTGTT+TGG 0.390224 3_3:+72099136 Msa0470030:CDS
ACTTCAAGGAAACGCTTTCC+AGG 0.393652 3_3:+72097379 Msa0470030:CDS
AGGAAGCGTAAATCTAATAA+TGG 0.401341 3_3:-72097075 None:intergenic
CCCTTGTTGGCACTTTGTCA+GGG 0.409622 3_3:+72099050 Msa0470030:CDS
ATCATCCAAGTTTCTCCTTA+CGG 0.436352 3_3:-72099176 None:intergenic
CGCTCTTTGTTGCTAAATGC+GGG 0.443266 3_3:+72098929 Msa0470030:CDS
CAGAGAGAAGCAGCTGAGTT+GGG 0.445724 3_3:-72099102 None:intergenic
ACAGAGAGAAGCAGCTGAGT+TGG 0.447865 3_3:-72099103 None:intergenic
CAAGAAGTGGTCCAGCGCTT+AGG 0.448672 3_3:-72099426 None:intergenic
TGAAGAACGAGGTGCATTCA+TGG 0.449382 3_3:+72098958 Msa0470030:CDS
AAAGCTTATTAGCGTATGCC+TGG 0.453590 3_3:+72099461 Msa0470030:CDS
GAAAAGTGAAGAAGTTGATC+GGG 0.470593 3_3:+72098985 Msa0470030:intron
GATGATGCTCAGCTTAAGAC+TGG 0.472044 3_3:+72099193 Msa0470030:CDS
CGTAAATCTAATAATGGAAG+TGG 0.481151 3_3:-72097069 None:intergenic
GGTGGCCTGAGTGAAGCATA+TGG 0.489258 3_3:-72099077 None:intergenic
GATTACACTCAACAACTTCA+AGG 0.499214 3_3:+72097365 Msa0470030:CDS
GAAGAACGAGGTGCATTCAT+GGG 0.509604 3_3:+72098959 Msa0470030:CDS
GAACGCACTTTCTGGAATGA+TGG 0.511508 3_3:+72097200 Msa0470030:CDS
AACAAAGGAGAATGAGAAGG+AGG 0.522216 3_3:-72097095 None:intergenic
GAGAAGCAGCTGAGTTGGGT+TGG 0.522960 3_3:-72099098 None:intergenic
GCCCTGACAAAGTGCCAACA+AGG 0.524369 3_3:-72099051 None:intergenic
AAGCAGCTGAGTTGGGTTGG+TGG 0.530246 3_3:-72099095 None:intergenic
GTGGCCTGAGTGAAGCATAT+GGG 0.535009 3_3:-72099076 None:intergenic
GGTCTTGCAATCCTAAGCGC+TGG 0.540628 3_3:+72099415 Msa0470030:intron
TGAAAAGTGAAGAAGTTGAT+CGG 0.542077 3_3:+72098984 Msa0470030:intron
ATTAACAAAGGAGAATGAGA+AGG 0.542089 3_3:-72097098 None:intergenic
AACGCACTTTCTGGAATGAT+GGG 0.549369 3_3:+72097201 Msa0470030:CDS
CAATTGATAAAACACGTTAG+CGG 0.555580 3_3:+72099580 Msa0470030:three_prime_UTR
CACATAAATAGTTCCATCCC+AGG 0.559029 3_3:-72099479 None:intergenic
AGCAATCTCAACTCTTTGAG+AGG 0.560228 3_3:-72097288 None:intergenic
TCGAAGTTCAGTTCAAGAAG+TGG 0.560534 3_3:-72099439 None:intergenic
ATATACCGTAAGGAGAAACT+TGG 0.564974 3_3:+72099171 Msa0470030:CDS
ACGCTCTTTGTTGCTAAATG+CGG 0.580608 3_3:+72098928 Msa0470030:CDS
AGGACTATTACTCACCACAT+TGG 0.591576 3_3:+72099722 Msa0470030:three_prime_UTR
ATGATGCTCAGCTTAAGACT+GGG 0.594958 3_3:+72099194 Msa0470030:CDS
AACTCAGCTGCTTCTCTCTG+TGG 0.595669 3_3:+72099105 Msa0470030:CDS
GCTCCCCATATGCTTCACTC+AGG 0.614386 3_3:+72099072 Msa0470030:CDS
AAGCTTATTAGCGTATGCCT+GGG 0.615492 3_3:+72099462 Msa0470030:CDS
ATTTACGTTTGAAATCACTA+CGG 0.616304 3_3:-72099756 None:intergenic
TTATTAGCGTATGCCTGGGA+TGG 0.620264 3_3:+72099466 Msa0470030:CDS
GGATGAAGAGAGATTGGAGT+CGG 0.627110 3_3:+72099006 Msa0470030:CDS
AAGTCAAAGAGAAATTTCAG+AGG 0.639606 3_3:+72098880 Msa0470030:CDS
TCTTTGTTGCTAAATGCGGG+AGG 0.641623 3_3:+72098932 Msa0470030:CDS
AAGAACGAGGTGCATTCATG+GGG 0.641964 3_3:+72098960 Msa0470030:CDS
TGGCCTGAGTGAAGCATATG+GGG 0.653318 3_3:-72099075 None:intergenic
AGAGGCAAAAGCTATGCTTG+AGG 0.674852 3_3:+72098898 Msa0470030:CDS
CCCTGACAAAGTGCCAACAA+GGG 0.676499 3_3:-72099050 None:intergenic
AGCAGCAGCAAAGAACTCAG+AGG 0.692182 3_3:+72097161 Msa0470030:intron
CGGCATGCAACTTTCCAATG+TGG 0.695904 3_3:-72099736 None:intergenic
GCGGGAGGTGCTGAAGAACG+AGG 0.698522 3_3:+72098947 Msa0470030:CDS
TGATGCTCAGCTTAAGACTG+GGG 0.707538 3_3:+72099195 Msa0470030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCAAATATAATACTAATAA+AGG - chr3_3:72098472-72098491 None:intergenic 15.0%
!! AATAAATAAAATGTTAAGAG+AGG - chr3_3:72098568-72098587 None:intergenic 15.0%
!!! AATGATTATCATTTTTTGTT+TGG - chr3_3:72099700-72099719 None:intergenic 15.0%
!!! TGAAACGTTTTAATTAACAA+AGG - chr3_3:72097113-72097132 None:intergenic 20.0%
!!! TGATTTTCAAAGTAAAGTAT+TGG - chr3_3:72097883-72097902 None:intergenic 20.0%
!!! AATACTTTACTTTGAAAATC+AGG + chr3_3:72097882-72097901 Msa0470030:intron 20.0%
!!! TGACAAATTTTAAAGAGAAA+CGG + chr3_3:72098028-72098047 Msa0470030:intron 20.0%
!! ATTAATAAAATTAAGCAACG+TGG + chr3_3:72098333-72098352 Msa0470030:intron 20.0%
!! TTAATAAAATTAAGCAACGT+GGG + chr3_3:72098334-72098353 Msa0470030:intron 20.0%
!! AAATATTAGAGTAATCCTAT+GGG - chr3_3:72098393-72098412 None:intergenic 20.0%
!! AAAATATTAGAGTAATCCTA+TGG - chr3_3:72098394-72098413 None:intergenic 20.0%
!! ATGATAATCGGAAAATTAAT+TGG - chr3_3:72099611-72099630 None:intergenic 20.0%
!! CAAAAAATGATAATCATTGA+AGG + chr3_3:72099702-72099721 Msa0470030:three_prime_UTR 20.0%
! ATTTAGTTAGAATAATGGCA+TGG - chr3_3:72097674-72097693 None:intergenic 25.0%
! ACGCTATTTAGTTAGAATAA+TGG - chr3_3:72097679-72097698 None:intergenic 25.0%
!!! TTTTCAAAGTAAAGTATTGG+AGG - chr3_3:72097880-72097899 None:intergenic 25.0%
! AGAAAATAGATAGTAGTAAG+TGG + chr3_3:72098138-72098157 Msa0470030:intron 25.0%
!!! AAAAAGTACTTATGATCATC+TGG - chr3_3:72098755-72098774 None:intergenic 25.0%
!! GTGTTTTATCAATTGGAAAA+GGG - chr3_3:72099575-72099594 None:intergenic 25.0%
!! ATTTACGTTTGAAATCACTA+CGG - chr3_3:72099759-72099778 None:intergenic 25.0%
! CGTAAATCTAATAATGGAAG+TGG - chr3_3:72097072-72097091 None:intergenic 30.0%
! AGGAAGCGTAAATCTAATAA+TGG - chr3_3:72097078-72097097 None:intergenic 30.0%
ATTAACAAAGGAGAATGAGA+AGG - chr3_3:72097101-72097120 None:intergenic 30.0%
ACTTGCTCTTAAACACTTTA+AGG + chr3_3:72097343-72097362 Msa0470030:CDS 30.0%
ACGTATATAAGCTATCTTGT+CGG + chr3_3:72097471-72097490 Msa0470030:intron 30.0%
AAACTCAATATTGATACACC+AGG + chr3_3:72097549-72097568 Msa0470030:intron 30.0%
AACTCAATATTGATACACCA+GGG + chr3_3:72097550-72097569 Msa0470030:intron 30.0%
AAAAAACGACATTTGATGCT+TGG - chr3_3:72097799-72097818 None:intergenic 30.0%
! AGAGTAAGTTTTACAAGTGA+TGG - chr3_3:72097857-72097876 None:intergenic 30.0%
CAAAAATGTCAAAATGAGAG+TGG + chr3_3:72098085-72098104 Msa0470030:intron 30.0%
AAATAGATAGTAGTAAGTGG+TGG + chr3_3:72098141-72098160 Msa0470030:intron 30.0%
TGAGCAAAAATTAACGATGA+AGG + chr3_3:72098179-72098198 Msa0470030:intron 30.0%
AAGGTTTATCCTGAATGAAA+GGG - chr3_3:72098453-72098472 None:intergenic 30.0%
AAAGGTTTATCCTGAATGAA+AGG - chr3_3:72098454-72098473 None:intergenic 30.0%
! GATATAAGACTAGTTGTTGA+AGG - chr3_3:72098523-72098542 None:intergenic 30.0%
TTGTATACATGCACTCTTTA+TGG + chr3_3:72098723-72098742 Msa0470030:intron 30.0%
! CTGTCTTTATTTGTCAACAA+AGG + chr3_3:72098794-72098813 Msa0470030:intron 30.0%
AAGTCAAAGAGAAATTTCAG+AGG + chr3_3:72098880-72098899 Msa0470030:CDS 30.0%
! TGAAAAGTGAAGAAGTTGAT+CGG + chr3_3:72098984-72099003 Msa0470030:intron 30.0%
! ATTTTACAGACAAGTCAAGT+TGG + chr3_3:72099284-72099303 Msa0470030:intron 30.0%
! TTTTCCCTTCATTTCTTTTG+TGG + chr3_3:72099327-72099346 Msa0470030:intron 30.0%
! TTTCCCTTCATTTCTTTTGT+GGG + chr3_3:72099328-72099347 Msa0470030:intron 30.0%
! CGTGTTTTATCAATTGGAAA+AGG - chr3_3:72099576-72099595 None:intergenic 30.0%
CAATTGATAAAACACGTTAG+CGG + chr3_3:72099580-72099599 Msa0470030:three_prime_UTR 30.0%
TCCATTTACGCTATGATAAT+CGG - chr3_3:72099623-72099642 None:intergenic 30.0%
!!! ATTTTTTGTTTGGCGTTTGA+AGG - chr3_3:72099690-72099709 None:intergenic 30.0%
! CGACATTTCATTTTCAACGA+TGG - chr3_3:72097137-72097156 None:intergenic 35.0%
GATTACACTCAACAACTTCA+AGG + chr3_3:72097365-72097384 Msa0470030:CDS 35.0%
TTCTAACTAAATAGCGTAGC+AGG + chr3_3:72097682-72097701 Msa0470030:intron 35.0%
! AAGTTTTACAAGTGATGGTC+AGG - chr3_3:72097852-72097871 None:intergenic 35.0%
TGTTCTACTTACATCAACCA+TGG - chr3_3:72098067-72098086 None:intergenic 35.0%
TACGCATAGAACCAATTAAC+AGG + chr3_3:72098304-72098323 Msa0470030:intron 35.0%
TTAATCACTCGCCTGTTAAT+TGG - chr3_3:72098318-72098337 None:intergenic 35.0%
! TTTTTCTTGCCCTTTCATTC+AGG + chr3_3:72098441-72098460 Msa0470030:intron 35.0%
!! CTTGAATCTTGAGGGTATTA+TGG - chr3_3:72098595-72098614 None:intergenic 35.0%
TAATACCCTCAAGATTCAAG+AGG + chr3_3:72098595-72098614 Msa0470030:intron 35.0%
AGTAGGGATAAAATTTCCTC+CGG + chr3_3:72098627-72098646 Msa0470030:intron 35.0%
AGAGTGCATGTATACAACAA+GGG - chr3_3:72098720-72098739 None:intergenic 35.0%
! AAGAGTGCATGTATACAACA+AGG - chr3_3:72098721-72098740 None:intergenic 35.0%
! GAAAAGTGAAGAAGTTGATC+GGG + chr3_3:72098985-72099004 Msa0470030:intron 35.0%
TTCGTATGTTGTGCATTGTT+TGG + chr3_3:72099136-72099155 Msa0470030:CDS 35.0%
! TGACTTTTCGATATACCGTA+AGG + chr3_3:72099161-72099180 Msa0470030:CDS 35.0%
ATATACCGTAAGGAGAAACT+TGG + chr3_3:72099171-72099190 Msa0470030:CDS 35.0%
ATCATCCAAGTTTCTCCTTA+CGG - chr3_3:72099179-72099198 None:intergenic 35.0%
CAACCCACAAAAGAAATGAA+GGG - chr3_3:72099334-72099353 None:intergenic 35.0%
TCAACCCACAAAAGAAATGA+AGG - chr3_3:72099335-72099354 None:intergenic 35.0%
! CGCTAACGTGTTTTATCAAT+TGG - chr3_3:72099582-72099601 None:intergenic 35.0%
TCCGATTATCATAGCGTAAA+TGG + chr3_3:72099619-72099638 Msa0470030:three_prime_UTR 35.0%
AACAAAGGAGAATGAGAAGG+AGG - chr3_3:72097098-72097117 None:intergenic 40.0%
GATTTGAAGAACGCACTTTC+TGG + chr3_3:72097192-72097211 Msa0470030:CDS 40.0%
!! AACGCACTTTCTGGAATGAT+GGG + chr3_3:72097201-72097220 Msa0470030:CDS 40.0%
AGCAATCTCAACTCTTTGAG+AGG - chr3_3:72097291-72097310 None:intergenic 40.0%
!!! GCAAGAACGTTACTTTTACC+TGG - chr3_3:72097400-72097419 None:intergenic 40.0%
AGCTATCTTGTCGGAACTTA+TGG + chr3_3:72097480-72097499 Msa0470030:intron 40.0%
CTGCAGTTGCATATCAAGTT+TGG + chr3_3:72097581-72097600 Msa0470030:intron 40.0%
ATAGCAGTAGGTGTGTTTGT+TGG - chr3_3:72097647-72097666 None:intergenic 40.0%
ATTTGATGCTTGGTAGATGG+TGG - chr3_3:72097789-72097808 None:intergenic 40.0%
GACATTTGATGCTTGGTAGA+TGG - chr3_3:72097792-72097811 None:intergenic 40.0%
! TTTTACAAGTGATGGTCAGG+TGG - chr3_3:72097849-72097868 None:intergenic 40.0%
GAAATCGTAAAATCTCGCAG+TGG + chr3_3:72097938-72097957 Msa0470030:intron 40.0%
! GATCGTGTAACCTTTGTTTG+TGG + chr3_3:72097981-72098000 Msa0470030:intron 40.0%
TTACATCAACCATGGTCACT+AGG - chr3_3:72098059-72098078 None:intergenic 40.0%
TAGTAGTAAGTGGTGGTCAA+AGG + chr3_3:72098148-72098167 Msa0470030:intron 40.0%
TTAACGATGAAGGAGATCCA+TGG + chr3_3:72098189-72098208 Msa0470030:intron 40.0%
TAACGATGAAGGAGATCCAT+GGG + chr3_3:72098190-72098209 Msa0470030:intron 40.0%
ACTCATCCAACCTACTTCTA+AGG - chr3_3:72098227-72098246 None:intergenic 40.0%
! TTAGAAGTAGGTTGGATGAG+TGG + chr3_3:72098226-72098245 Msa0470030:intron 40.0%
!! GTTGAAGGCTTTAAGCATAG+AGG - chr3_3:72098508-72098527 None:intergenic 40.0%
TTCCTCCTCTTGAATCTTGA+GGG - chr3_3:72098603-72098622 None:intergenic 40.0%
TCAAGATTCAAGAGGAGGAA+GGG + chr3_3:72098603-72098622 Msa0470030:intron 40.0%
AGTTCAGCAGTGAAGCATAA+AGG - chr3_3:72098653-72098672 None:intergenic 40.0%
GAGTGCATGTATACAACAAG+GGG - chr3_3:72098719-72098738 None:intergenic 40.0%
! GACAGAGTACTTCAGTAACA+AGG - chr3_3:72098779-72098798 None:intergenic 40.0%
ACGCTCTTTGTTGCTAAATG+CGG + chr3_3:72098928-72098947 Msa0470030:CDS 40.0%
ATGATGCTCAGCTTAAGACT+GGG + chr3_3:72099194-72099213 Msa0470030:CDS 40.0%
!!! GCAGCTTTTGCTGTTGTTAA+AGG + chr3_3:72099223-72099242 Msa0470030:CDS 40.0%
AATCAACTCACTGTGCTCTA+AGG + chr3_3:72099247-72099266 Msa0470030:intron 40.0%
TCGAAGTTCAGTTCAAGAAG+TGG - chr3_3:72099442-72099461 None:intergenic 40.0%
AAAGCTTATTAGCGTATGCC+TGG + chr3_3:72099461-72099480 Msa0470030:CDS 40.0%
AAGCTTATTAGCGTATGCCT+GGG + chr3_3:72099462-72099481 Msa0470030:CDS 40.0%
CACATAAATAGTTCCATCCC+AGG - chr3_3:72099482-72099501 None:intergenic 40.0%
AGGACTATTACTCACCACAT+TGG + chr3_3:72099722-72099741 Msa0470030:three_prime_UTR 40.0%
!! GAACGCACTTTCTGGAATGA+TGG + chr3_3:72097200-72097219 Msa0470030:CDS 45.0%
ACTTCAAGGAAACGCTTTCC+AGG + chr3_3:72097379-72097398 Msa0470030:CDS 45.0%
TAAATAGCGTAGCAGGCAAC+CGG + chr3_3:72097689-72097708 Msa0470030:intron 45.0%
! AATGTGGTGACTAGTTGTGC+CGG - chr3_3:72097711-72097730 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAATG+TGG - chr3_3:72097727-72097746 None:intergenic 45.0%
TTTGAGAGAGAGAGAGAGAG+AGG - chr3_3:72097756-72097775 None:intergenic 45.0%
! TGGTAGATGGTGGTAACTAG+TGG - chr3_3:72097779-72097798 None:intergenic 45.0%
! CAGGTGGTGTGGTATTTTAC+CGG - chr3_3:72097833-72097852 None:intergenic 45.0%
! CGTGTAACCTTTGTTTGTGG+CGG + chr3_3:72097984-72098003 Msa0470030:intron 45.0%
! TTTTCGACCGCCACAAACAA+AGG - chr3_3:72097994-72098013 None:intergenic 45.0%
AACGATGAAGGAGATCCATG+GGG + chr3_3:72098191-72098210 Msa0470030:intron 45.0%
CCTTCACATTGCTCAACTAG+TGG - chr3_3:72098360-72098379 None:intergenic 45.0%
CCACTAGTTGAGCAATGTGA+AGG + chr3_3:72098357-72098376 Msa0470030:intron 45.0%
GAAGGAAAGAGTTTGCCCAT+AGG + chr3_3:72098375-72098394 Msa0470030:intron 45.0%
TTAAGCATAGAGGTCTGGAC+TGG - chr3_3:72098498-72098517 None:intergenic 45.0%
!! AGGCTTTAAGCATAGAGGTC+TGG - chr3_3:72098503-72098522 None:intergenic 45.0%
TACCCTCAAGATTCAAGAGG+AGG + chr3_3:72098598-72098617 Msa0470030:intron 45.0%
CTTCCTCCTCTTGAATCTTG+AGG - chr3_3:72098604-72098623 None:intergenic 45.0%
CTCAAGATTCAAGAGGAGGA+AGG + chr3_3:72098602-72098621 Msa0470030:intron 45.0%
CAAGATTCAAGAGGAGGAAG+GGG + chr3_3:72098604-72098623 Msa0470030:intron 45.0%
AGAGGCAAAAGCTATGCTTG+AGG + chr3_3:72098898-72098917 Msa0470030:CDS 45.0%
CGCTCTTTGTTGCTAAATGC+GGG + chr3_3:72098929-72098948 Msa0470030:CDS 45.0%
TCTTTGTTGCTAAATGCGGG+AGG + chr3_3:72098932-72098951 Msa0470030:CDS 45.0%
TGAAGAACGAGGTGCATTCA+TGG + chr3_3:72098958-72098977 Msa0470030:CDS 45.0%
GAAGAACGAGGTGCATTCAT+GGG + chr3_3:72098959-72098978 Msa0470030:CDS 45.0%
AAGAACGAGGTGCATTCATG+GGG + chr3_3:72098960-72098979 Msa0470030:CDS 45.0%
TGATCGGGATGAAGAGAGAT+TGG + chr3_3:72099000-72099019 Msa0470030:CDS 45.0%
GGATGAAGAGAGATTGGAGT+CGG + chr3_3:72099006-72099025 Msa0470030:CDS 45.0%
GATGATGCTCAGCTTAAGAC+TGG + chr3_3:72099193-72099212 Msa0470030:CDS 45.0%
TGATGCTCAGCTTAAGACTG+GGG + chr3_3:72099195-72099214 Msa0470030:CDS 45.0%
CTGAAACAAAACCGTGTTGC+AGG + chr3_3:72099394-72099413 Msa0470030:intron 45.0%
TTATTAGCGTATGCCTGGGA+TGG + chr3_3:72099466-72099485 Msa0470030:CDS 45.0%
AGCAGCAGCAAAGAACTCAG+AGG + chr3_3:72097161-72097180 Msa0470030:intron 50.0%
!!! CGTTTTTTGTCATGCAGCGC+CGG + chr3_3:72097811-72097830 Msa0470030:intron 50.0%
ACGGAGATTCCTAGTGACCA+TGG + chr3_3:72098047-72098066 Msa0470030:intron 50.0%
! AGGTTGGCTGCCTTAGAAGT+AGG + chr3_3:72098214-72098233 Msa0470030:intron 50.0%
TGGCTGCCTTAGAAGTAGGT+TGG + chr3_3:72098218-72098237 Msa0470030:intron 50.0%
CAGCAGTGAAGCATAAAGGC+CGG - chr3_3:72098649-72098668 None:intergenic 50.0%
GCATCTATCTCTGCCCTTGT+TGG + chr3_3:72099037-72099056 Msa0470030:CDS 50.0%
! CCCTGACAAAGTGCCAACAA+GGG - chr3_3:72099053-72099072 None:intergenic 50.0%
CCCTTGTTGGCACTTTGTCA+GGG + chr3_3:72099050-72099069 Msa0470030:CDS 50.0%
TGGCCTGAGTGAAGCATATG+GGG - chr3_3:72099078-72099097 None:intergenic 50.0%
GTGGCCTGAGTGAAGCATAT+GGG - chr3_3:72099079-72099098 None:intergenic 50.0%
CAGAGAGAAGCAGCTGAGTT+GGG - chr3_3:72099105-72099124 None:intergenic 50.0%
ACAGAGAGAAGCAGCTGAGT+TGG - chr3_3:72099106-72099125 None:intergenic 50.0%
AACTCAGCTGCTTCTCTCTG+TGG + chr3_3:72099105-72099124 Msa0470030:CDS 50.0%
GGATTGCAAGACCTGCAACA+CGG - chr3_3:72099408-72099427 None:intergenic 50.0%
CGGCATGCAACTTTCCAATG+TGG - chr3_3:72099739-72099758 None:intergenic 50.0%
CAACTGCAGAGACAAGTCCC+TGG - chr3_3:72097570-72097589 None:intergenic 55.0%
TGGCATGGCAGCATAGCAGT+AGG - chr3_3:72097659-72097678 None:intergenic 55.0%
CAAGTGATGGTCAGGTGGTG+TGG - chr3_3:72097844-72097863 None:intergenic 55.0%
GATGAAGGAGATCCATGGGG+AGG + chr3_3:72098194-72098213 Msa0470030:intron 55.0%
AAGGAGATCCATGGGGAGGT+TGG + chr3_3:72098198-72098217 Msa0470030:intron 55.0%
TCAAGAGGAGGAAGGGGAGT+AGG + chr3_3:72098610-72098629 Msa0470030:intron 55.0%
CAAGAGGAGGAAGGGGAGTA+GGG + chr3_3:72098611-72098630 Msa0470030:intron 55.0%
CAGTGAAGCATAAAGGCCGG+AGG - chr3_3:72098646-72098665 None:intergenic 55.0%
GCCCTTGTTGGCACTTTGTC+AGG + chr3_3:72099049-72099068 Msa0470030:CDS 55.0%
! GCCCTGACAAAGTGCCAACA+AGG - chr3_3:72099054-72099073 None:intergenic 55.0%
GCTCCCCATATGCTTCACTC+AGG + chr3_3:72099072-72099091 Msa0470030:CDS 55.0%
GGTGGCCTGAGTGAAGCATA+TGG - chr3_3:72099080-72099099 None:intergenic 55.0%
!! AAGCAGCTGAGTTGGGTTGG+TGG - chr3_3:72099098-72099117 None:intergenic 55.0%
! GAGAAGCAGCTGAGTTGGGT+TGG - chr3_3:72099101-72099120 None:intergenic 55.0%
GGTCTTGCAATCCTAAGCGC+TGG + chr3_3:72099415-72099434 Msa0470030:intron 55.0%
CAAGAAGTGGTCCAGCGCTT+AGG - chr3_3:72099429-72099448 None:intergenic 55.0%
TAAGGCAGCCAACCTCCCCA+TGG - chr3_3:72098209-72098228 None:intergenic 60.0%
!! GCGGGAGGTGCTGAAGAACG+AGG + chr3_3:72098947-72098966 Msa0470030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72097047 72099790 72097047 ID=Msa0470030;Name=Msa0470030
chr3_3 mRNA 72097047 72099790 72097047 ID=Msa0470030-mRNA-1;Parent=Msa0470030;Name=Msa0470030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.4|0.16|1|0.2|0.16|6|247|272
chr3_3 exon 72097047 72097152 72097047 ID=Msa0470030-mRNA-1:exon:17832;Parent=Msa0470030-mRNA-1
chr3_3 exon 72097163 72097263 72097163 ID=Msa0470030-mRNA-1:exon:17833;Parent=Msa0470030-mRNA-1
chr3_3 exon 72097284 72097400 72097284 ID=Msa0470030-mRNA-1:exon:17834;Parent=Msa0470030-mRNA-1
chr3_3 exon 72098872 72098989 72098872 ID=Msa0470030-mRNA-1:exon:17835;Parent=Msa0470030-mRNA-1
chr3_3 exon 72098996 72099244 72098996 ID=Msa0470030-mRNA-1:exon:17836;Parent=Msa0470030-mRNA-1
chr3_3 exon 72099416 72099790 72099416 ID=Msa0470030-mRNA-1:exon:17837;Parent=Msa0470030-mRNA-1
chr3_3 CDS 72097047 72097152 72097047 ID=Msa0470030-mRNA-1:cds;Parent=Msa0470030-mRNA-1
chr3_3 CDS 72097163 72097263 72097163 ID=Msa0470030-mRNA-1:cds;Parent=Msa0470030-mRNA-1
chr3_3 CDS 72097284 72097400 72097284 ID=Msa0470030-mRNA-1:cds;Parent=Msa0470030-mRNA-1
chr3_3 CDS 72098872 72098989 72098872 ID=Msa0470030-mRNA-1:cds;Parent=Msa0470030-mRNA-1
chr3_3 CDS 72098996 72099244 72098996 ID=Msa0470030-mRNA-1:cds;Parent=Msa0470030-mRNA-1
chr3_3 CDS 72099416 72099543 72099416 ID=Msa0470030-mRNA-1:cds;Parent=Msa0470030-mRNA-1
chr3_3 three_prime_UTR 72099544 72099790 72099544 ID=Msa0470030-mRNA-1:three_prime_utr;Parent=Msa0470030-mRNA-1
Gene Sequence

>Msa0470030

ATGATGAACGTTATGATGATTTCCACTTCCATTATTAGATTTACGCTTCCTCCTTCTCATTCTCCTTTGTTAATTAAAACGTTTCATCCATCGTTGAAAATGAAATCAGCAGCAAAGAACTCAGAGGAGAACAACGATTTGAAGAACGCACTTTCTGGAATGATGGGTGAGCAAGTTGAACAACTCTTAAGCAGAGAAGAGAACAAAAAAGCCTCTCAAAGAGTTGAGATTGCTAAGACACAACTCGCTTTCATTCAGAAACAAGAACTTGCTCTTAAACACTTTAAGGATTACACTCAACAACTTCAAGGAAACGCTTTCCAGATTGCAGAAAGTCAAAGAGAAATTTCAGAGGCAAAAGCTATGCTTGAGGAAGCAGAACGCTCTTTGTTGCTAAATGCGGGAGGTGCTGAAGAACGAGGTGCATTCATGGGGATGAAAAAAGTTGATCGGGATGAAGAGAGATTGGAGTCGGTAAAAGCAGCATCTATCTCTGCCCTTGTTGGCACTTTGTCAGGGCTCCCCATATGCTTCACTCAGGCCACCAACCCAACTCAGCTGCTTCTCTCTGTGGCAATCAATTTCGTATGTTGTGCATTGTTTGGAGTGACTTTTCGATATACCGTAAGGAGAAACTTGGATGATGCTCAGCTTAAGACTGGGGTTGCAGCAGCTTTTGCTGTTGTTAAAGGTCTTGCAATCCTAAGCGCTGGACCACTTCTTGAACTGAACTTCGAAAGCTTATTAGCGTATGCCTGGGATGGAACTATTTATGTGTCTGAGAATCTTATAATTTTGTTTCTGCTGCTGTTAGTCTAG

Protein sequence

>Msa0470030

MMNVMMISTSIIRFTLPPSHSPLLIKTFHPSLKMKSAAKNSEENNDLKNALSGMMGEQVEQLLSREENKKASQRVEIAKTQLAFIQKQELALKHFKDYTQQLQGNAFQIAESQREISEAKAMLEEAERSLLLNAGGAEERGAFMGMKKVDRDEERLESVKAASISALVGTLSGLPICFTQATNPTQLLLSVAINFVCCALFGVTFRYTVRRNLDDAQLKTGVAAAFAVVKGLAILSAGPLLELNFESLLAYAWDGTIYVSENLIILFLLLLV*