AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650860 MtrunA17_Chr4g0043161 81.944 360 5 2 1 329 1 331 0.0 578
Msa0650860 MtrunA17_Chr5g0419131 66.234 308 44 2 53 329 9 287 7.60e-147 415
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650860 AT1G13820.1 60.294 340 71 3 12 320 25 331 1.01e-143 409
Msa0650860 AT5G39220.1 52.199 341 100 4 8 314 13 324 4.97e-125 362
Msa0650860 AT5G39220.2 50.440 341 98 4 8 314 13 316 1.08e-118 345

Find 93 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAATCAATTAAAATTA+AGG 0.156564 4_3:+58120626 None:intergenic
AGCAGAAAACACTCATAATT+TGG 0.205221 4_3:-58121223 Msa0650860:CDS
GGTTGGGGTTTCTCTGATTT+AGG 0.215057 4_3:-58124389 Msa0650860:CDS
TTAGTTCCCTTCACTGAAAA+TGG 0.239430 4_3:-58125875 Msa0650860:exon
TTGATAGCACATACAGCTTC+TGG 0.256899 4_3:+58123857 None:intergenic
GGTGACCGCAATCGGGTATT+TGG 0.267011 4_3:+58121014 None:intergenic
TGAATGTCCATTCAAGTATA+TGG 0.269679 4_3:+58120652 None:intergenic
GGCCATTGACATTCTTGGTT+GGG 0.269914 4_3:-58124405 Msa0650860:CDS
TTCTGTTGTGAAACTCATTA+AGG 0.278348 4_3:-58120969 Msa0650860:CDS
GCAGAAAACACTCATAATTT+GGG 0.293612 4_3:-58121222 Msa0650860:CDS
ACCTGTCAAAACCATGTAAA+AGG 0.301670 4_3:+58124574 None:intergenic
CTTATTGTTCAGCTCATGTT+TGG 0.302697 4_3:-58124477 Msa0650860:intron
TTGATTCTGTTGACGTCTTT+AGG 0.328912 4_3:+58125775 None:intergenic
CCTAGAGCGGCAGCTTATGC+TGG 0.339470 4_3:-58123664 Msa0650860:CDS
TTCAGCTACAACCTTGAATA+TGG 0.349901 4_3:+58125828 None:intergenic
ATGAGGAAGGTGACCGCAAT+CGG 0.374591 4_3:+58121006 None:intergenic
ACATGGGCCATTGACATTCT+TGG 0.376931 4_3:-58124410 Msa0650860:CDS
AAACCATGTAAAAGGACAAT+TGG 0.389663 4_3:+58124582 None:intergenic
AAGGTTTAACTTACGGAAAC+GGG 0.401840 4_3:+58125709 None:intergenic
TATAAATCCATATACTTGAA+TGG 0.409935 4_3:-58120659 Msa0650860:three_prime_UTR
GCCATTGACATTCTTGGTTG+GGG 0.416519 4_3:-58124404 Msa0650860:CDS
TGTGCCATTGACCATATTCA+AGG 0.428148 4_3:-58125839 Msa0650860:CDS
ATGAGTTTCACAACAGAATC+CGG 0.434321 4_3:+58120974 None:intergenic
CAGAGAAATGACAGAATGTT+TGG 0.437973 4_3:-58120866 Msa0650860:three_prime_UTR
GGGCCATTGACATTCTTGGT+TGG 0.442632 4_3:-58124406 Msa0650860:CDS
TTCTCTGTCAGAATGGCAAA+AGG 0.444450 4_3:+58120882 None:intergenic
TATCAATTCAGTGGGGCTGC+TGG 0.457316 4_3:-58120798 Msa0650860:three_prime_UTR
ATTTGGCGTATAATTGCATC+AGG 0.462626 4_3:+58121031 None:intergenic
AAAGGTTTAACTTACGGAAA+CGG 0.466827 4_3:+58125708 None:intergenic
GCTTGCATTGTTTATTGCCA+TGG 0.468319 4_3:-58121476 Msa0650860:CDS
CTGTCATTTCTCTGTCAGAA+TGG 0.470108 4_3:+58120875 None:intergenic
ATATTGGTTGGTCCAAGCCT+TGG 0.474251 4_3:-58123914 Msa0650860:CDS
CTAGAGCGGCAGCTTATGCT+GGG 0.475042 4_3:-58123663 Msa0650860:CDS
TTGAATGGTTATCAATTCAG+TGG 0.478474 4_3:-58120807 Msa0650860:three_prime_UTR
AGTAGTGATGGAGCTTTGAA+TGG 0.478812 4_3:-58120822 Msa0650860:three_prime_UTR
CCGCTCTAGGTAAAGTTGCT+AGG 0.483024 4_3:+58123677 None:intergenic
TTCACACAACTACTCATGAT+AGG 0.489264 4_3:+58124630 None:intergenic
CATTAAGGAATTTGTTCAGA+AGG 0.489397 4_3:-58120954 Msa0650860:CDS
GTTGACGTCTTTAGGAAGAA+AGG 0.491857 4_3:+58125783 None:intergenic
TTCAGTGAAGGGAACTAAGC+TGG 0.493919 4_3:+58125880 None:intergenic
TGTTCAGCTCATGTTTGGAA+TGG 0.498439 4_3:-58124472 Msa0650860:intron
TGACTAAAATGAAGAGAGAA+AGG 0.500162 4_3:+58124332 None:intergenic
CCTTCCTCATGTTGAAAGAC+CGG 0.504688 4_3:-58120993 Msa0650860:CDS
CCAGCATAAGCTGCCGCTCT+AGG 0.515122 4_3:+58123664 None:intergenic
CTAGTGGAATCATTGAGTTA+TGG 0.517618 4_3:-58120772 Msa0650860:three_prime_UTR
TATCCATTGCTTGAGGAAGC+TGG 0.517842 4_3:-58124440 Msa0650860:CDS
GCATTGTTTATTGCCATGGT+GGG 0.519692 4_3:-58121472 Msa0650860:CDS
TGAATGGTTATCAATTCAGT+GGG 0.519888 4_3:-58120806 Msa0650860:three_prime_UTR
GTGGGGCTGCTGGTCACTAG+TGG 0.520636 4_3:-58120788 Msa0650860:three_prime_UTR
ACCCCAACCAAGAATGTCAA+TGG 0.531301 4_3:+58124403 None:intergenic
TCGCTCGAACTCTCGCTACA+CGG 0.547927 4_3:-58125744 Msa0650860:CDS
ATTCAAAGCTCCATCACTAC+TGG 0.551805 4_3:+58120824 None:intergenic
GATGCTAGTGTATATACAGA+AGG 0.551943 4_3:-58123709 Msa0650860:CDS
TGAGGAAGGTGACCGCAATC+GGG 0.558242 4_3:+58121007 None:intergenic
ACGTCTTTAGGAAGAAAGGA+AGG 0.559625 4_3:+58125787 None:intergenic
AGTGTATATACAGAAGGGAC+AGG 0.561208 4_3:-58123703 Msa0650860:CDS
GTAGCGAGAGTTCGAGCGAA+AGG 0.562295 4_3:+58125748 None:intergenic
TTGTTTATTGCCATGGTGGG+AGG 0.562994 4_3:-58121469 Msa0650860:CDS
GCAACAGCAGAACCAAGGCT+TGG 0.568008 4_3:+58123902 None:intergenic
GCGCTTTGATACAACATCGC+AGG 0.568479 4_3:+58124268 None:intergenic
TAGCGAGAGTTCGAGCGAAA+GGG 0.570769 4_3:+58125749 None:intergenic
TCTCTGTCAGAATGGCAAAA+GGG 0.576525 4_3:+58120883 None:intergenic
ATACCAGCTTCCTCAAGCAA+TGG 0.578808 4_3:+58124437 None:intergenic
ACAACCTTGAATATGGTCAA+TGG 0.579427 4_3:+58125835 None:intergenic
ACCGCGGCATCCTCCCACCA+TGG 0.581524 4_3:+58121459 None:intergenic
GAAGCCACTGGTGCAGAACA+AGG 0.584513 4_3:-58124610 Msa0650860:CDS
AGGAAGCTGGTATTGAGACA+TGG 0.584554 4_3:-58124427 Msa0650860:CDS
GAGTAGTTGTGTGAAGCCAC+TGG 0.590963 4_3:-58124622 Msa0650860:CDS
CGTCTTTAGGAAGAAAGGAA+GGG 0.596147 4_3:+58125788 None:intergenic
GAAAGGTATGAACATAACAT+AGG 0.597641 4_3:+58124349 None:intergenic
CTTGGACCAACCAATATCAT+CGG 0.599779 4_3:+58123920 None:intergenic
TGCATTGTTTATTGCCATGG+TGG 0.602778 4_3:-58121473 Msa0650860:CDS
CAGAAAACACTCATAATTTG+GGG 0.615099 4_3:-58121221 Msa0650860:CDS
CCTAGCAACTTTACCTAGAG+CGG 0.619639 4_3:-58123677 Msa0650860:CDS
CCGGTCTTTCAACATGAGGA+AGG 0.621810 4_3:+58120993 None:intergenic
GGAAGCTGGTATTGAGACAT+GGG 0.624050 4_3:-58124426 Msa0650860:CDS
GCCATGGTGGGAGGATGCCG+CGG 0.624595 4_3:-58121460 Msa0650860:CDS
ATAATTGATTGCAAAGTCGA+TGG 0.624931 4_3:+58123880 None:intergenic
CAAGCTTATTGCTGATTATG+CGG 0.631427 4_3:+58121189 None:intergenic
GAATCCGGTCTTTCAACATG+AGG 0.633980 4_3:+58120989 None:intergenic
ATACACATATCCATTGCTTG+AGG 0.640800 4_3:-58124447 Msa0650860:CDS
ATGCTAGTGTATATACAGAA+GGG 0.645627 4_3:-58123708 Msa0650860:CDS
CGATGGCAACAGCAGAACCA+AGG 0.654068 4_3:+58123897 None:intergenic
AAGTGATGATGAAGATTGAG+TGG 0.658807 4_3:-58125956 Msa0650860:five_prime_UTR
TTTGATACAACATCGCAGGA+AGG 0.660741 4_3:+58124272 None:intergenic
AATCAGCAATAAGCTTGCAG+TGG 0.671390 4_3:-58121183 Msa0650860:intron
ATGGCAATAAACAATGCAAG+CGG 0.672060 4_3:+58121478 None:intergenic
GAAAACACTCATAATTTGGG+GGG 0.683422 4_3:-58121219 Msa0650860:CDS
ATACGCCAAATACCCGATTG+CGG 0.708937 4_3:-58121019 Msa0650860:CDS
AGAAAACACTCATAATTTGG+GGG 0.722458 4_3:-58121220 Msa0650860:CDS
ACTGATCATAAAATTAACCG+CGG 0.725390 4_3:+58121443 None:intergenic
TAGAGCGGCAGCTTATGCTG+GGG 0.733422 4_3:-58123662 Msa0650860:intron
GAATGGTTATCAATTCAGTG+GGG 0.739821 4_3:-58120805 Msa0650860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATATAATTATATTCAA+AGG - chr4_3:58121034-58121053 Msa0650860:CDS 10.0%
!!! TATTGCTTAATTTTTTATTA+AGG - chr4_3:58121667-58121686 Msa0650860:intron 10.0%
!!! ATTTATATACAACTTTAAAA+TGG + chr4_3:58122416-58122435 None:intergenic 10.0%
!! AATTAAATTTCAATTTAGTA+GGG + chr4_3:58123663-58123682 None:intergenic 10.0%
!! AAATTAAATTTCAATTTAGT+AGG + chr4_3:58123664-58123683 None:intergenic 10.0%
!! ATATATAATCTTATATAGAT+TGG - chr4_3:58125073-58125092 Msa0650860:intron 10.0%
!! ATATACTTATTAAAAAGATT+TGG - chr4_3:58125304-58125323 Msa0650860:intron 10.0%
!! GAATATAATTATATATGTGT+GGG + chr4_3:58121032-58121051 None:intergenic 15.0%
!! TGAATATAATTATATATGTG+TGG + chr4_3:58121033-58121052 None:intergenic 15.0%
!! TTGTAATAATTGTTTATAAC+AGG - chr4_3:58121231-58121250 Msa0650860:intron 15.0%
!! CAAATCATATGTATAATATT+TGG + chr4_3:58121552-58121571 None:intergenic 15.0%
!! ATAAAAAATTAAGCAATAGT+GGG + chr4_3:58121665-58121684 None:intergenic 15.0%
!! AATAAAAAATTAAGCAATAG+TGG + chr4_3:58121666-58121685 None:intergenic 15.0%
!! TAAAAAAAACTTCAAAAGTT+GGG + chr4_3:58122773-58122792 None:intergenic 15.0%
!! TTAAAAAAAACTTCAAAAGT+TGG + chr4_3:58122774-58122793 None:intergenic 15.0%
!! ATTAAATTTCAATTTAGTAG+GGG + chr4_3:58123662-58123681 None:intergenic 15.0%
!!! TCTAAAACAATGAAAAAAAT+TGG + chr4_3:58124739-58124758 None:intergenic 15.0%
!!! AATTTTTTTCATTGTTTTAG+AGG - chr4_3:58124738-58124757 Msa0650860:intron 15.0%
!! TTATATGAAAATAATGATCT+TGG - chr4_3:58125441-58125460 Msa0650860:intron 15.0%
!!! ATCTTTTTATTAGACTTTAG+TGG - chr4_3:58120918-58120937 Msa0650860:CDS 20.0%
!! TAATTATATTCAAAGGTTTG+AGG - chr4_3:58121041-58121060 Msa0650860:CDS 20.0%
!! ATTGTTTATAACAGGATAAT+AGG - chr4_3:58121239-58121258 Msa0650860:intron 20.0%
!!! TCCATTAGGTTTTTTATATT+TGG + chr4_3:58121389-58121408 None:intergenic 20.0%
!! TATTTGCATATAATTCAAAC+AGG - chr4_3:58121904-58121923 Msa0650860:intron 20.0%
!!! AGAAATTCATTAATTTGTGA+AGG + chr4_3:58122541-58122560 None:intergenic 20.0%
!!! CACATTTTTATCCTATATAT+TGG - chr4_3:58123482-58123501 Msa0650860:intron 20.0%
!! GAGTTAAAAATCCAATATAT+AGG + chr4_3:58123496-58123515 None:intergenic 20.0%
!!! ATAAATTCATTATGTCCTTT+TGG + chr4_3:58123813-58123832 None:intergenic 20.0%
!!! ATTTAAAGCTTCAAAATGTT+GGG - chr4_3:58123986-58124005 Msa0650860:intron 20.0%
!!! TAATTTTGTTCAGAATTCAA+GGG - chr4_3:58124265-58124284 Msa0650860:CDS 20.0%
!! ATTATTGCAATAATGTGAAA+AGG + chr4_3:58124473-58124492 None:intergenic 20.0%
!!! ACTAGAATTTTTACTTTCAT+GGG - chr4_3:58124523-58124542 Msa0650860:intron 20.0%
!!! TTATGACAAAATAGGATTTT+TGG + chr4_3:58124865-58124884 None:intergenic 20.0%
!! TGTGAATTAATATGATATGA+AGG + chr4_3:58124996-58125015 None:intergenic 20.0%
!!! ATTTTTGTTAGAAAACACAA+TGG - chr4_3:58125233-58125252 Msa0650860:intron 20.0%
!! TATAAATCCATATACTTGAA+TGG - chr4_3:58125915-58125934 Msa0650860:five_prime_UTR 20.0%
! GATATTAATAAGAAAAGAGC+TGG + chr4_3:58120896-58120915 None:intergenic 25.0%
!!! CAAATTTCTAAGTGTTTTTG+TGG - chr4_3:58121073-58121092 Msa0650860:intron 25.0%
! TTTCATAATGAAATTGAACC+AGG - chr4_3:58121151-58121170 Msa0650860:intron 25.0%
! TTATAACAGGATAATAGGAT+AGG - chr4_3:58121244-58121263 Msa0650860:intron 25.0%
!! TATTCCTTTTCATTTCACAT+TGG - chr4_3:58121284-58121303 Msa0650860:intron 25.0%
! TTATCCAATGTGAAATGAAA+AGG + chr4_3:58121291-58121310 None:intergenic 25.0%
! ATGAACATGTGTTTATAAGT+GGG - chr4_3:58121319-58121338 Msa0650860:intron 25.0%
! GCCAAATATAAAAAACCTAA+TGG - chr4_3:58121385-58121404 Msa0650860:intron 25.0%
!!! AACACGTTGTTTATTGATTT+AGG - chr4_3:58121416-58121435 Msa0650860:CDS 25.0%
! ATATTTGGTATGTGTCAAAA+TGG + chr4_3:58121537-58121556 None:intergenic 25.0%
! TCTTACAGTGAAAAAATGAT+GGG + chr4_3:58121589-58121608 None:intergenic 25.0%
! AGTAAGAAATCAGATATGTT+AGG - chr4_3:58122493-58122512 Msa0650860:intron 25.0%
! CAAGTGGAAGTAAAATAAAT+AGG + chr4_3:58122571-58122590 None:intergenic 25.0%
! TTATCTAGAAAGCTATTGTT+AGG - chr4_3:58122990-58123009 Msa0650860:intron 25.0%
!!! AAGTTTTATGAACTATATGG+TGG + chr4_3:58123269-58123288 None:intergenic 25.0%
!!! CGAAAGTTTTATGAACTATA+TGG + chr4_3:58123272-58123291 None:intergenic 25.0%
! TTCATAAAACTTTCGATACA+AGG - chr4_3:58123277-58123296 Msa0650860:intron 25.0%
! AGGACATAATGAATTTATCT+TGG - chr4_3:58123815-58123834 Msa0650860:intron 25.0%
! CATAATGAATTTATCTTGGA+TGG - chr4_3:58123819-58123838 Msa0650860:intron 25.0%
!!! CAACATTTTGAAGCTTTAAA+TGG + chr4_3:58123987-58124006 None:intergenic 25.0%
!! CATTTAAAGCTTCAAAATGT+TGG - chr4_3:58123985-58124004 Msa0650860:intron 25.0%
! AAATTACCCTAAATACAATG+TGG + chr4_3:58124251-58124270 None:intergenic 25.0%
!! GTAATTTTGTTCAGAATTCA+AGG - chr4_3:58124264-58124283 Msa0650860:CDS 25.0%
!! AATTTTGTTCAGAATTCAAG+GGG - chr4_3:58124266-58124285 Msa0650860:CDS 25.0%
! AAGTAAAAATTCTAGTGAAG+AGG + chr4_3:58124519-58124538 None:intergenic 25.0%
!! CACTAGAATTTTTACTTTCA+TGG - chr4_3:58124522-58124541 Msa0650860:intron 25.0%
!! CTAGAATTTTTACTTTCATG+GGG - chr4_3:58124524-58124543 Msa0650860:intron 25.0%
!!! AAATAGGATTTTTGGATTCT+TGG + chr4_3:58124857-58124876 None:intergenic 25.0%
!!! AACACTTGTTATGACAAAAT+AGG + chr4_3:58124873-58124892 None:intergenic 25.0%
!! ATTTTGTCATAACAAGTGTT+AGG - chr4_3:58124873-58124892 Msa0650860:intron 25.0%
!!! CTAGTTAGTTCCAGTTTTTT+TGG - chr4_3:58120659-58120678 Msa0650860:three_prime_UTR 30.0%
GTAATAGCAACCAAAAAAAC+TGG + chr4_3:58120672-58120691 None:intergenic 30.0%
! AAAGGTTTAACTTACGGAAA+CGG + chr4_3:58120869-58120888 None:intergenic 30.0%
! TTTATTAGACTTTAGTGGAC+CGG - chr4_3:58120923-58120942 Msa0650860:CDS 30.0%
AGATAGATTGAAGATGTATC+TGG - chr4_3:58120969-58120988 Msa0650860:CDS 30.0%
! TGAGATGACTTGCATAATAA+AGG + chr4_3:58121118-58121137 None:intergenic 30.0%
CATGAACATGTGTTTATAAG+TGG - chr4_3:58121318-58121337 Msa0650860:intron 30.0%
TGAACATGTGTTTATAAGTG+GGG - chr4_3:58121320-58121339 Msa0650860:intron 30.0%
ACGTGTTAGTTATATCCATT+AGG + chr4_3:58121403-58121422 None:intergenic 30.0%
GTCTTACAGTGAAAAAATGA+TGG + chr4_3:58121590-58121609 None:intergenic 30.0%
TTTAGGTCTCATCTTACTTA+AGG - chr4_3:58121620-58121639 Msa0650860:intron 30.0%
ATCTTACTTAAGGTCTTCTT+TGG - chr4_3:58121630-58121649 Msa0650860:intron 30.0%
! AGTTAAAGAGTTGATTGACA+AGG - chr4_3:58121748-58121767 Msa0650860:intron 30.0%
! AATCCAATTGTCCTTTTACA+TGG - chr4_3:58121989-58122008 Msa0650860:intron 30.0%
AAACCATGTAAAAGGACAAT+TGG + chr4_3:58121995-58122014 None:intergenic 30.0%
!! TTTATTTCTGAAGTTACCCT+CGG - chr4_3:58122062-58122081 Msa0650860:intron 30.0%
! GAAAGGTATGAACATAACAT+AGG + chr4_3:58122228-58122247 None:intergenic 30.0%
TGACTAAAATGAAGAGAGAA+AGG + chr4_3:58122245-58122264 None:intergenic 30.0%
TTAATTAGCATACATGTACC+TGG + chr4_3:58122343-58122362 None:intergenic 30.0%
TGCTATCATATTGTGTGATT+CGG - chr4_3:58122470-58122489 Msa0650860:intron 30.0%
! TAGGCTATCTTCTAAAGAAA+TGG - chr4_3:58122512-58122531 Msa0650860:intron 30.0%
GGAAGTAAAATAAATAGGTG+CGG + chr4_3:58122566-58122585 None:intergenic 30.0%
!! ATTGGTTTATCTACCAGTTT+TGG - chr4_3:58122613-58122632 Msa0650860:intron 30.0%
TAATGTAGGATTTCCAAAAC+TGG + chr4_3:58122629-58122648 None:intergenic 30.0%
!!! TATCATCGGCTTTTTAATGT+AGG + chr4_3:58122643-58122662 None:intergenic 30.0%
CATTAAAAAGCCGATGATAT+TGG - chr4_3:58122644-58122663 Msa0650860:intron 30.0%
ATAATTGATTGCAAAGTCGA+TGG + chr4_3:58122697-58122716 None:intergenic 30.0%
ATGCTAGTGTATATACAGAA+GGG - chr4_3:58122866-58122885 Msa0650860:intron 30.0%
ATGTAGAAACTGTTAAGAGT+GGG + chr4_3:58123213-58123232 None:intergenic 30.0%
TTATGAACTATATGGTGGTT+AGG + chr4_3:58123264-58123283 None:intergenic 30.0%
ATCTTCAATCCAAAACATGA+AGG - chr4_3:58123421-58123440 Msa0650860:intron 30.0%
TTGAGAATGTAGTTGCTTAA+AGG + chr4_3:58123720-58123739 None:intergenic 30.0%
!! AATGTTGGGTTTTATGACTT+TGG - chr4_3:58124000-58124019 Msa0650860:intron 30.0%
TTAGTTGTCTTTCCAACTAT+GGG - chr4_3:58124216-58124235 Msa0650860:intron 30.0%
ATGGATACCACATTGTATTT+AGG - chr4_3:58124241-58124260 Msa0650860:intron 30.0%
TGGATACCACATTGTATTTA+GGG - chr4_3:58124242-58124261 Msa0650860:intron 30.0%
!! AGGGGAAGTATCAAAATATT+AGG - chr4_3:58124284-58124303 Msa0650860:CDS 30.0%
!! GGGGAAGTATCAAAATATTA+GGG - chr4_3:58124285-58124304 Msa0650860:CDS 30.0%
!!! AGGGTTGTTTTTAAGAACTT+TGG - chr4_3:58124304-58124323 Msa0650860:CDS 30.0%
! GACCTGATTTTTGTATAAGT+AGG - chr4_3:58124377-58124396 Msa0650860:CDS 30.0%
CACCTACTTATACAAAAATC+AGG + chr4_3:58124382-58124401 None:intergenic 30.0%
! ATTTTTGTATAAGTAGGTGC+CGG - chr4_3:58124383-58124402 Msa0650860:CDS 30.0%
! TAGTTTGCATATACACGTAA+CGG + chr4_3:58124653-58124672 None:intergenic 30.0%
AACTTACATTTGTCCAATCA+AGG + chr4_3:58124709-58124728 None:intergenic 30.0%
TAGCTCATAACAAACCATTT+GGG - chr4_3:58124791-58124810 Msa0650860:intron 30.0%
!! AATATGATATGAAGGTGCTA+TGG + chr4_3:58124988-58125007 None:intergenic 30.0%
ACTGATCATAAAATTAACCG+CGG + chr4_3:58125134-58125153 None:intergenic 30.0%
! GTTAATTTTATGATCAGTGG+TGG - chr4_3:58125136-58125155 Msa0650860:intron 30.0%
GCAGATAAAAATGGTATTTC+TGG - chr4_3:58125174-58125193 Msa0650860:intron 30.0%
! GGCTTTCAAATTTGTTTAAC+AGG - chr4_3:58125325-58125344 Msa0650860:intron 30.0%
AGCAGAAAACACTCATAATT+TGG - chr4_3:58125351-58125370 Msa0650860:intron 30.0%
GCAGAAAACACTCATAATTT+GGG - chr4_3:58125352-58125371 Msa0650860:intron 30.0%
CAGAAAACACTCATAATTTG+GGG - chr4_3:58125353-58125372 Msa0650860:intron 30.0%
AGAAAACACTCATAATTTGG+GGG - chr4_3:58125354-58125373 Msa0650860:intron 30.0%
TTCTGTTGTGAAACTCATTA+AGG - chr4_3:58125605-58125624 Msa0650860:intron 30.0%
! CATTAAGGAATTTGTTCAGA+AGG - chr4_3:58125620-58125639 Msa0650860:intron 30.0%
!!! GTTTGGTGTTTTTCCAAAAA+TGG - chr4_3:58125725-58125744 Msa0650860:CDS 30.0%
TTGAATGGTTATCAATTCAG+TGG - chr4_3:58125767-58125786 Msa0650860:CDS 30.0%
TGAATGGTTATCAATTCAGT+GGG - chr4_3:58125768-58125787 Msa0650860:CDS 30.0%
TGAATGTCCATTCAAGTATA+TGG + chr4_3:58125925-58125944 None:intergenic 30.0%
! AAGTGATGATGAAGATTGAG+TGG - chr4_3:58120618-58120637 Msa0650860:three_prime_UTR 35.0%
TTAGTTCCCTTCACTGAAAA+TGG - chr4_3:58120699-58120718 Msa0650860:three_prime_UTR 35.0%
ACAACCTTGAATATGGTCAA+TGG + chr4_3:58120742-58120761 None:intergenic 35.0%
TTCAGCTACAACCTTGAATA+TGG + chr4_3:58120749-58120768 None:intergenic 35.0%
TTGATTCTGTTGACGTCTTT+AGG + chr4_3:58120802-58120821 None:intergenic 35.0%
! AAGGTTTAACTTACGGAAAC+GGG + chr4_3:58120868-58120887 None:intergenic 35.0%
! GGAAGCAAAGGTTTAACTTA+CGG + chr4_3:58120875-58120894 None:intergenic 35.0%
TAATTCAGTTCAGAGTAACC+TGG + chr4_3:58121172-58121191 None:intergenic 35.0%
TTACTCTGAACTGAATTACG+TGG - chr4_3:58121174-58121193 Msa0650860:intron 35.0%
TGAACTGAATTACGTGGAAA+GGG - chr4_3:58121180-58121199 Msa0650860:intron 35.0%
AACAGGATAATAGGATAGGA+TGG - chr4_3:58121248-58121267 Msa0650860:intron 35.0%
ATAGGATAGGATGGAAACTA+TGG - chr4_3:58121257-58121276 Msa0650860:intron 35.0%
GAACATGTGTTTATAAGTGG+GGG - chr4_3:58121321-58121340 Msa0650860:intron 35.0%
!! CGTTGTTTATTGATTTAGGC+CGG - chr4_3:58121420-58121439 Msa0650860:CDS 35.0%
ATAAAATTGACGCGCTACAT+AGG + chr4_3:58121504-58121523 None:intergenic 35.0%
! CAGTGAAAAAATGATGGGAA+GGG + chr4_3:58121584-58121603 None:intergenic 35.0%
! ACAGTGAAAAAATGATGGGA+AGG + chr4_3:58121585-58121604 None:intergenic 35.0%
!! GTAAGACTTCTTCTAGCTTT+AGG - chr4_3:58121603-58121622 Msa0650860:intron 35.0%
ACTCAACAGTACTTGTGTAA+GGG - chr4_3:58121692-58121711 Msa0650860:intron 35.0%
! TAAAGAGTTGATTGACAAGG+AGG - chr4_3:58121751-58121770 Msa0650860:intron 35.0%
GGCAATGTTAGTATTATGCT+GGG + chr4_3:58121797-58121816 None:intergenic 35.0%
TTCACACAACTACTCATGAT+AGG + chr4_3:58121947-58121966 None:intergenic 35.0%
!!! TCCTTTTACATGGTTTTGAC+AGG - chr4_3:58121999-58122018 Msa0650860:intron 35.0%
ACCTGTCAAAACCATGTAAA+AGG + chr4_3:58122003-58122022 None:intergenic 35.0%
CAGGTGCTAAAAAAATATGC+AGG - chr4_3:58122018-58122037 Msa0650860:intron 35.0%
AAATATGCAGGAGACAGAAT+TGG - chr4_3:58122030-58122049 Msa0650860:intron 35.0%
CAAACATGAGCTGAACAATA+AGG + chr4_3:58122099-58122118 None:intergenic 35.0%
CTTATTGTTCAGCTCATGTT+TGG - chr4_3:58122097-58122116 Msa0650860:intron 35.0%
ATACACATATCCATTGCTTG+AGG - chr4_3:58122127-58122146 Msa0650860:intron 35.0%
AAAAAGCCGATGATATTGGT+TGG - chr4_3:58122648-58122667 Msa0650860:intron 35.0%
GATGCTAGTGTATATACAGA+AGG - chr4_3:58122865-58122884 Msa0650860:intron 35.0%
AGATAATTGACAGTGATGTG+TGG + chr4_3:58122976-58122995 None:intergenic 35.0%
! CGTAAAGAGAGTATAAGACA+CGG - chr4_3:58123014-58123033 Msa0650860:intron 35.0%
! GTAAAGAGAGTATAAGACAC+GGG - chr4_3:58123015-58123034 Msa0650860:intron 35.0%
GATCTTCACGTAGAATCTTA+AGG - chr4_3:58123041-58123060 Msa0650860:intron 35.0%
!! ATCTTAAGGCATTGAGAGTA+CGG - chr4_3:58123055-58123074 Msa0650860:intron 35.0%
! CTCACATTTTCATCCAATGT+CGG - chr4_3:58123105-58123124 Msa0650860:intron 35.0%
GACTTCTAACTAACACTTGA+TGG - chr4_3:58123127-58123146 Msa0650860:intron 35.0%
TGTAGAAACTGTTAAGAGTG+GGG + chr4_3:58123212-58123231 None:intergenic 35.0%
GATGTAGAAACTGTTAAGAG+TGG + chr4_3:58123214-58123233 None:intergenic 35.0%
! AATCCAAAACATGAAGGCAT+TGG - chr4_3:58123427-58123446 Msa0650860:intron 35.0%
! TAACCAATGCCTTCATGTTT+TGG + chr4_3:58123433-58123452 None:intergenic 35.0%
AGCTAGGGAACATTGATATA+GGG + chr4_3:58123554-58123573 None:intergenic 35.0%
!! GTAGTTGCTTAAAGGTATCA+TGG + chr4_3:58123712-58123731 None:intergenic 35.0%
!!! TTTTGGTTTGTATGATTGGC+AGG + chr4_3:58123796-58123815 None:intergenic 35.0%
TGCCAATCATACAAACCAAA+AGG - chr4_3:58123795-58123814 Msa0650860:intron 35.0%
!!! GTCCTTTTGGTTTGTATGAT+TGG + chr4_3:58123800-58123819 None:intergenic 35.0%
TAGCTCACATCACATGTAAA+TGG + chr4_3:58123893-58123912 None:intergenic 35.0%
GCAGCTTGAAATTTGAATCA+AGG + chr4_3:58123950-58123969 None:intergenic 35.0%
CATAGTTGGAAAGACAACTA+AGG + chr4_3:58124217-58124236 None:intergenic 35.0%
CTTAGTTGTCTTTCCAACTA+TGG - chr4_3:58124215-58124234 Msa0650860:intron 35.0%
TATCAAATGCTCATCCAACA+AGG + chr4_3:58124338-58124357 None:intergenic 35.0%
AAAAGGACTGGAAACAGAAA+AGG + chr4_3:58124456-58124475 None:intergenic 35.0%
TGCAATAATGTGAAAAGGAC+TGG + chr4_3:58124468-58124487 None:intergenic 35.0%
AGTTTGCATATACACGTAAC+GGG + chr4_3:58124652-58124671 None:intergenic 35.0%
! ACTGAAAGATATGTTGGTGA+AGG + chr4_3:58124681-58124700 None:intergenic 35.0%
! GCTAGTACTGAAAGATATGT+TGG + chr4_3:58124687-58124706 None:intergenic 35.0%
CTAGCTCATAACAAACCATT+TGG - chr4_3:58124790-58124809 Msa0650860:intron 35.0%
AAGAGATTAGATGCTTAGGA+AGG + chr4_3:58124951-58124970 None:intergenic 35.0%
TGGTAAGAGATTAGATGCTT+AGG + chr4_3:58124955-58124974 None:intergenic 35.0%
AAGCATCTAATCTCTTACCA+AGG - chr4_3:58124955-58124974 Msa0650860:intron 35.0%
ATGGCAATAAACAATGCAAG+CGG + chr4_3:58125099-58125118 None:intergenic 35.0%
! GCGGTTAATTTTATGATCAG+TGG - chr4_3:58125133-58125152 Msa0650860:intron 35.0%
! TGTTGCTTCGCAGATAAAAA+TGG - chr4_3:58125165-58125184 Msa0650860:intron 35.0%
GAAAACACTCATAATTTGGG+GGG - chr4_3:58125355-58125374 Msa0650860:intron 35.0%
! CAAGCTTATTGCTGATTATG+CGG + chr4_3:58125388-58125407 None:intergenic 35.0%
ATTTGGCGTATAATTGCATC+AGG + chr4_3:58125546-58125565 None:intergenic 35.0%
ATGAGTTTCACAACAGAATC+CGG + chr4_3:58125603-58125622 None:intergenic 35.0%
CAGAGAAATGACAGAATGTT+TGG - chr4_3:58125708-58125727 Msa0650860:intron 35.0%
!!! ATCACTACTGGTTCCATTTT+TGG + chr4_3:58125741-58125760 None:intergenic 35.0%
AAAAATGGAACCAGTAGTGA+TGG - chr4_3:58125740-58125759 Msa0650860:CDS 35.0%
GAATGGTTATCAATTCAGTG+GGG - chr4_3:58125769-58125788 Msa0650860:CDS 35.0%
CTAGTGGAATCATTGAGTTA+TGG - chr4_3:58125802-58125821 Msa0650860:CDS 35.0%
! GAGCAACCATTTTCAGTGAA+GGG + chr4_3:58120708-58120727 None:intergenic 40.0%
! AGAGCAACCATTTTCAGTGA+AGG + chr4_3:58120709-58120728 None:intergenic 40.0%
! TGTGCCATTGACCATATTCA+AGG - chr4_3:58120735-58120754 Msa0650860:three_prime_UTR 40.0%
! CGTCTTTAGGAAGAAAGGAA+GGG + chr4_3:58120789-58120808 None:intergenic 40.0%
! ACGTCTTTAGGAAGAAAGGA+AGG + chr4_3:58120790-58120809 None:intergenic 40.0%
! GTTGACGTCTTTAGGAAGAA+AGG + chr4_3:58120794-58120813 None:intergenic 40.0%
AAGAAAAGAGCTGGAAGCAA+AGG + chr4_3:58120887-58120906 None:intergenic 40.0%
! TATCTGAAGTGTCTGTGCTA+CGG + chr4_3:58120954-58120973 None:intergenic 40.0%
! TATATGTGTGGGTGTCGTAT+TGG + chr4_3:58121021-58121040 None:intergenic 40.0%
CTGAACTGAATTACGTGGAA+AGG - chr4_3:58121179-58121198 Msa0650860:intron 40.0%
!! TATTGATTTAGGCCGGTCTA+AGG - chr4_3:58121427-58121446 Msa0650860:CDS 40.0%
CACTCAACAGTACTTGTGTA+AGG - chr4_3:58121691-58121710 Msa0650860:intron 40.0%
CTCAACAGTACTTGTGTAAG+GGG - chr4_3:58121693-58121712 Msa0650860:intron 40.0%
AAGGGGATATACAGATAGCT+TGG - chr4_3:58121710-58121729 Msa0650860:intron 40.0%
! TATACAGATAGCTTGGTGAC+TGG - chr4_3:58121717-58121736 Msa0650860:intron 40.0%
! ATACAGATAGCTTGGTGACT+GGG - chr4_3:58121718-58121737 Msa0650860:intron 40.0%
TTAGTATTATGCTGGGAGTG+GGG + chr4_3:58121790-58121809 None:intergenic 40.0%
GTTAGTATTATGCTGGGAGT+GGG + chr4_3:58121791-58121810 None:intergenic 40.0%
TGTTAGTATTATGCTGGGAG+TGG + chr4_3:58121792-58121811 None:intergenic 40.0%
GGGCAATGTTAGTATTATGC+TGG + chr4_3:58121798-58121817 None:intergenic 40.0%
ACATGAGCTGAACAATAAGG+AGG + chr4_3:58122096-58122115 None:intergenic 40.0%
TGTTCAGCTCATGTTTGGAA+TGG - chr4_3:58122102-58122121 Msa0650860:intron 40.0%
TTTGATACAACATCGCAGGA+AGG + chr4_3:58122305-58122324 None:intergenic 40.0%
!! AACCTTGATAGCTTTGTTGC+TGG - chr4_3:58122385-58122404 Msa0650860:intron 40.0%
CTTGGACCAACCAATATCAT+CGG + chr4_3:58122657-58122676 None:intergenic 40.0%
! TTGATAGCACATACAGCTTC+TGG + chr4_3:58122720-58122739 None:intergenic 40.0%
CCTGAAAAATGACCAGATCA+TGG + chr4_3:58122825-58122844 None:intergenic 40.0%
!!! CCATGATCTGGTCATTTTTC+AGG - chr4_3:58122822-58122841 Msa0650860:intron 40.0%
!!! TGATCTGGTCATTTTTCAGG+TGG - chr4_3:58122825-58122844 Msa0650860:intron 40.0%
AGTGTATATACAGAAGGGAC+AGG - chr4_3:58122871-58122890 Msa0650860:intron 40.0%
!!! GGGCTAAAGGCTTTTTAAGT+AGG + chr4_3:58122949-58122968 None:intergenic 40.0%
!! TCTTAAGGCATTGAGAGTAC+GGG - chr4_3:58123056-58123075 Msa0650860:intron 40.0%
GTTAGTTAGAAGTCCGACAT+TGG + chr4_3:58123121-58123140 None:intergenic 40.0%
GTAGAAACTGTTAAGAGTGG+GGG + chr4_3:58123211-58123230 None:intergenic 40.0%
AGATCTCCACATTAGGCTAA+AGG - chr4_3:58123371-58123390 Msa0650860:intron 40.0%
CAGCTAGGGAACATTGATAT+AGG + chr4_3:58123555-58123574 None:intergenic 40.0%
CTATATCAATGTTCCCTAGC+TGG - chr4_3:58123553-58123572 Msa0650860:intron 40.0%
! GAATTATCTAGCTCCAGCTA+GGG + chr4_3:58123569-58123588 None:intergenic 40.0%
! TGAATTATCTAGCTCCAGCT+AGG + chr4_3:58123570-58123589 None:intergenic 40.0%
!! GCTTAAAGGTATCATGGAGA+GGG + chr4_3:58123706-58123725 None:intergenic 40.0%
!! TGCTTAAAGGTATCATGGAG+AGG + chr4_3:58123707-58123726 None:intergenic 40.0%
AAGCAATTGCTAACTCCAAG+AGG + chr4_3:58123852-58123871 None:intergenic 40.0%
! CACTCAAGCAGTAATTTGCA+AGG - chr4_3:58123913-58123932 Msa0650860:CDS 40.0%
! CATCACTAGAAAAGTACACG+TGG + chr4_3:58124070-58124089 None:intergenic 40.0%
GTTGGAATGATACATAGCCT+AGG + chr4_3:58124101-58124120 None:intergenic 40.0%
AACTAAGGATGTCAGAGAAG+CGG + chr4_3:58124202-58124221 None:intergenic 40.0%
! CTTTGGAAAGTTGTCCTTGT+TGG - chr4_3:58124321-58124340 Msa0650860:CDS 40.0%
AGTATAATAACGCCAAGCAC+CGG + chr4_3:58124405-58124424 None:intergenic 40.0%
GAGATAAGTATGAGAGGATG+AGG - chr4_3:58124548-58124567 Msa0650860:intron 40.0%
!! CTTTCAGTACTAGCCTTGAT+TGG - chr4_3:58124693-58124712 Msa0650860:intron 40.0%
CAAAGTGTGCATTTCCCAAA+TGG + chr4_3:58124808-58124827 None:intergenic 40.0%
GCTTGCATTGTTTATTGCCA+TGG - chr4_3:58125098-58125117 Msa0650860:intron 40.0%
TGCATTGTTTATTGCCATGG+TGG - chr4_3:58125101-58125120 Msa0650860:intron 40.0%
GCATTGTTTATTGCCATGGT+GGG - chr4_3:58125102-58125121 Msa0650860:intron 40.0%
AATCAGCAATAAGCTTGCAG+TGG - chr4_3:58125391-58125410 Msa0650860:intron 40.0%
TCTCTGTCAGAATGGCAAAA+GGG + chr4_3:58125694-58125713 None:intergenic 40.0%
TTCTCTGTCAGAATGGCAAA+AGG + chr4_3:58125695-58125714 None:intergenic 40.0%
! CTGTCATTTCTCTGTCAGAA+TGG + chr4_3:58125702-58125721 None:intergenic 40.0%
ATTCAAAGCTCCATCACTAC+TGG + chr4_3:58125753-58125772 None:intergenic 40.0%
!! AGTAGTGATGGAGCTTTGAA+TGG - chr4_3:58125752-58125771 Msa0650860:CDS 40.0%
TTCAGTGAAGGGAACTAAGC+TGG + chr4_3:58120697-58120716 None:intergenic 45.0%
TGTCTGTGCTACGGATTTAC+CGG + chr4_3:58120945-58120964 None:intergenic 45.0%
! TTTAGGCCGGTCTAAGGTTA+AGG - chr4_3:58121433-58121452 Msa0650860:CDS 45.0%
AAGGCTAGAGACCTAAGCAA+GGG + chr4_3:58121468-58121487 None:intergenic 45.0%
TAAGGCTAGAGACCTAAGCA+AGG + chr4_3:58121469-58121488 None:intergenic 45.0%
AAATTGACGCGCTACATAGG+AGG + chr4_3:58121501-58121520 None:intergenic 45.0%
! TACAGATAGCTTGGTGACTG+GGG - chr4_3:58121719-58121738 Msa0650860:intron 45.0%
! AGAGTTGATTGACAAGGAGG+TGG - chr4_3:58121754-58121773 Msa0650860:intron 45.0%
! TTTTCCTTGTTCTGCACCAG+TGG + chr4_3:58121971-58121990 None:intergenic 45.0%
TAAGGAGGAGTGAAATCCGA+GGG + chr4_3:58122081-58122100 None:intergenic 45.0%
ATAAGGAGGAGTGAAATCCG+AGG + chr4_3:58122082-58122101 None:intergenic 45.0%
TATCCATTGCTTGAGGAAGC+TGG - chr4_3:58122134-58122153 Msa0650860:intron 45.0%
ATACCAGCTTCCTCAAGCAA+TGG + chr4_3:58122140-58122159 None:intergenic 45.0%
! AGGAAGCTGGTATTGAGACA+TGG - chr4_3:58122147-58122166 Msa0650860:intron 45.0%
! GGAAGCTGGTATTGAGACAT+GGG - chr4_3:58122148-58122167 Msa0650860:intron 45.0%
ACATGGGCCATTGACATTCT+TGG - chr4_3:58122164-58122183 Msa0650860:intron 45.0%
GGCCATTGACATTCTTGGTT+GGG - chr4_3:58122169-58122188 Msa0650860:intron 45.0%
GCCATTGACATTCTTGGTTG+GGG - chr4_3:58122170-58122189 Msa0650860:intron 45.0%
ACCCCAACCAAGAATGTCAA+TGG + chr4_3:58122174-58122193 None:intergenic 45.0%
GGTTGGGGTTTCTCTGATTT+AGG - chr4_3:58122185-58122204 Msa0650860:intron 45.0%
! AAAGCGCGAACACTTTTACC+AGG - chr4_3:58122322-58122341 Msa0650860:intron 45.0%
CTCCAGCAACAAAGCTATCA+AGG + chr4_3:58122390-58122409 None:intergenic 45.0%
!! TGATAGCTTTGTTGCTGGAG+TGG - chr4_3:58122390-58122409 Msa0650860:intron 45.0%
TCAACACAGAGCGAAACAAG+TGG + chr4_3:58122587-58122606 None:intergenic 45.0%
ACTTGTTTCGCTCTGTGTTG+AGG - chr4_3:58122586-58122605 Msa0650860:intron 45.0%
CTTGTTTCGCTCTGTGTTGA+GGG - chr4_3:58122587-58122606 Msa0650860:intron 45.0%
! ATATTGGTTGGTCCAAGCCT+TGG - chr4_3:58122660-58122679 Msa0650860:intron 45.0%
CAAGTGACTATGCCATGATC+TGG - chr4_3:58122810-58122829 Msa0650860:intron 45.0%
CCTAGCAACTTTACCTAGAG+CGG - chr4_3:58122897-58122916 Msa0650860:intron 45.0%
! GTGGATTGACTCACACTTGA+GGG + chr4_3:58123174-58123193 None:intergenic 45.0%
!! AGTGGATTGACTCACACTTG+AGG + chr4_3:58123175-58123194 None:intergenic 45.0%
ATATGGTGGTTAGGTGACGT+GGG + chr4_3:58123255-58123274 None:intergenic 45.0%
TATATGGTGGTTAGGTGACG+TGG + chr4_3:58123256-58123275 None:intergenic 45.0%
TGGTTGCCTTTAGCCTAATG+TGG + chr4_3:58123380-58123399 None:intergenic 45.0%
TTGGATGGCTCATAACCTCT+TGG - chr4_3:58123834-58123853 Msa0650860:intron 45.0%
CTAGTGATGTCTATCCTCCT+AGG - chr4_3:58124081-58124100 Msa0650860:intron 45.0%
GGAATGATACATAGCCTAGG+AGG + chr4_3:58124098-58124117 None:intergenic 45.0%
! ACTGACACAGAAGAGTTGGT+TGG + chr4_3:58124119-58124138 None:intergenic 45.0%
GAAGACTGACACAGAAGAGT+TGG + chr4_3:58124123-58124142 None:intergenic 45.0%
! GTCTTTCCAACTATGGGCTA+TGG - chr4_3:58124222-58124241 Msa0650860:intron 45.0%
TGGTATCCATAGCCCATAGT+TGG + chr4_3:58124231-58124250 None:intergenic 45.0%
TGGGGAGAGATAAGTATGAG+AGG - chr4_3:58124542-58124561 Msa0650860:intron 45.0%
! GGTGCTATGGTTGATATCCT+TGG + chr4_3:58124975-58124994 None:intergenic 45.0%
! TTGTTTATTGCCATGGTGGG+AGG - chr4_3:58125105-58125124 Msa0650860:intron 45.0%
CGAAAGAATCGTCAGCTTAG+TGG - chr4_3:58125261-58125280 Msa0650860:intron 45.0%
ATACGCCAAATACCCGATTG+CGG - chr4_3:58125555-58125574 Msa0650860:intron 45.0%
CCTTCCTCATGTTGAAAGAC+CGG - chr4_3:58125581-58125600 Msa0650860:intron 45.0%
GAATCCGGTCTTTCAACATG+AGG + chr4_3:58125588-58125607 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTTTAAAC+GGG + chr4_3:58121818-58121837 None:intergenic 5.0%
!!! GATTTTTTTTTTTTTTTAAA+CGG + chr4_3:58121819-58121838 None:intergenic 5.0%
!!! ATTTAATTTAATCATTTTTT+TGG - chr4_3:58123675-58123694 Msa0650860:CDS 5.0%
!!! TTTAATTTAATCATTTTTTT+GGG - chr4_3:58123676-58123695 Msa0650860:CDS 5.0%
!! ATTAAAATCAATTAAAATTA+AGG + chr4_3:58125951-58125970 None:intergenic 5.0%
TAGCGAGAGTTCGAGCGAAA+GGG + chr4_3:58120828-58120847 None:intergenic 50.0%
GCAATCCTCACTTCGCAAGT+CGG - chr4_3:58121343-58121362 Msa0650860:intron 50.0%
!! CAAAACCGACTTGCGAAGTG+AGG + chr4_3:58121351-58121370 None:intergenic 50.0%
! CGATGGCCTTAACCTTAGAC+CGG + chr4_3:58121442-58121461 None:intergenic 50.0%
CATAGGAGGTGGTGTGAGTA+AGG + chr4_3:58121487-58121506 None:intergenic 50.0%
GAGTAGTTGTGTGAAGCCAC+TGG - chr4_3:58121952-58121971 Msa0650860:intron 50.0%
GGGCCATTGACATTCTTGGT+TGG - chr4_3:58122168-58122187 Msa0650860:intron 50.0%
GCGCTTTGATACAACATCGC+AGG + chr4_3:58122309-58122328 None:intergenic 50.0%
GCTCTGTGTTGAGGGTGAAT+TGG - chr4_3:58122595-58122614 Msa0650860:intron 50.0%
! CCGCTCTAGGTAAAGTTGCT+AGG + chr4_3:58122900-58122919 None:intergenic 50.0%
TGACAGTGATGTGTGGCTGA+GGG + chr4_3:58122969-58122988 None:intergenic 50.0%
TTGACAGTGATGTGTGGCTG+AGG + chr4_3:58122970-58122989 None:intergenic 50.0%
GGGGGAACATATGTGATGAG+TGG + chr4_3:58123193-58123212 None:intergenic 50.0%
ATCACAGGCGTTTGGGCTAA+AGG + chr4_3:58123312-58123331 None:intergenic 50.0%
CAGTGGTATCACAGGCGTTT+GGG + chr4_3:58123319-58123338 None:intergenic 50.0%
ACAGTGGTATCACAGGCGTT+TGG + chr4_3:58123320-58123339 None:intergenic 50.0%
AACGCCTGTGATACCACTGT+TGG - chr4_3:58123320-58123339 Msa0650860:intron 50.0%
ACGCCTGTGATACCACTGTT+GGG - chr4_3:58123321-58123340 Msa0650860:intron 50.0%
TGACCCAACAGTGGTATCAC+AGG + chr4_3:58123327-58123346 None:intergenic 50.0%
ATACCACTGTTGGGTCACGA+TGG - chr4_3:58123330-58123349 Msa0650860:intron 50.0%
TACCACTGTTGGGTCACGAT+GGG - chr4_3:58123331-58123350 Msa0650860:intron 50.0%
! GGAGATCTCACCCGTGTTTT+AGG + chr4_3:58123359-58123378 None:intergenic 50.0%
ACGGGTGAGATCTCCACATT+AGG - chr4_3:58123364-58123383 Msa0650860:intron 50.0%
TGTTGTCCAAACCACTTGCG+TGG + chr4_3:58123400-58123419 None:intergenic 50.0%
!! TATAAGTAGGTGCCGGTGCT+TGG - chr4_3:58124390-58124409 Msa0650860:CDS 50.0%
ATTCAAGTGACGCTCACCAC+TGG - chr4_3:58124590-58124609 Msa0650860:CDS 50.0%
ATGAGGAAGGTGACCGCAAT+CGG + chr4_3:58125571-58125590 None:intergenic 50.0%
CCGGTCTTTCAACATGAGGA+AGG + chr4_3:58125584-58125603 None:intergenic 50.0%
TATCAATTCAGTGGGGCTGC+TGG - chr4_3:58125776-58125795 Msa0650860:CDS 50.0%
GTAGCGAGAGTTCGAGCGAA+AGG + chr4_3:58120829-58120848 None:intergenic 55.0%
TCGCTCGAACTCTCGCTACA+CGG - chr4_3:58120830-58120849 Msa0650860:three_prime_UTR 55.0%
GACCTAAGCAAGGGCTTCGA+TGG + chr4_3:58121459-58121478 None:intergenic 55.0%
TTGACGCGCTACATAGGAGG+TGG + chr4_3:58121498-58121517 None:intergenic 55.0%
! AGATAGCTTGGTGACTGGGG+TGG - chr4_3:58121722-58121741 Msa0650860:intron 55.0%
! GATAGCTTGGTGACTGGGGT+GGG - chr4_3:58121723-58121742 Msa0650860:intron 55.0%
! ATAGCTTGGTGACTGGGGTG+GGG - chr4_3:58121724-58121743 Msa0650860:intron 55.0%
GAAGCCACTGGTGCAGAACA+AGG - chr4_3:58121964-58121983 Msa0650860:intron 55.0%
GCAACAGCAGAACCAAGGCT+TGG + chr4_3:58122675-58122694 None:intergenic 55.0%
CGATGGCAACAGCAGAACCA+AGG + chr4_3:58122680-58122699 None:intergenic 55.0%
CTAGAGCGGCAGCTTATGCT+GGG - chr4_3:58122911-58122930 Msa0650860:intron 55.0%
TAGAGCGGCAGCTTATGCTG+GGG - chr4_3:58122912-58122931 Msa0650860:intron 55.0%
GATGTGTGGCTGAGGGCTAA+AGG + chr4_3:58122962-58122981 None:intergenic 55.0%
ACAGGCGTTTGGGCTAAAGG+TGG + chr4_3:58123309-58123328 None:intergenic 55.0%
ACCACTGTTGGGTCACGATG+GGG - chr4_3:58123332-58123351 Msa0650860:intron 55.0%
CACGATGGGGGCCTAAAACA+CGG - chr4_3:58123345-58123364 Msa0650860:intron 55.0%
ACGATGGGGGCCTAAAACAC+GGG - chr4_3:58123346-58123365 Msa0650860:intron 55.0%
GCTAAAGGCAACCACGCAAG+TGG - chr4_3:58123386-58123405 Msa0650860:intron 55.0%
AGGCAACCACGCAAGTGGTT+TGG - chr4_3:58123391-58123410 Msa0650860:intron 55.0%
GGTGACCGCAATCGGGTATT+TGG + chr4_3:58125563-58125582 None:intergenic 55.0%
TGAGGAAGGTGACCGCAATC+GGG + chr4_3:58125570-58125589 None:intergenic 55.0%
GGCCATCGAAGCCCTTGCTT+AGG - chr4_3:58121454-58121473 Msa0650860:CDS 60.0%
! TAGCTTGGTGACTGGGGTGG+GGG - chr4_3:58121725-58121744 Msa0650860:intron 60.0%
CCAGCATAAGCTGCCGCTCT+AGG + chr4_3:58122913-58122932 None:intergenic 60.0%
CCTAGAGCGGCAGCTTATGC+TGG - chr4_3:58122910-58122929 Msa0650860:intron 60.0%
CCACTGTTGGGTCACGATGG+GGG - chr4_3:58123333-58123352 Msa0650860:intron 60.0%
CCCCCATCGTGACCCAACAG+TGG + chr4_3:58123336-58123355 None:intergenic 65.0%
GTGGGGCTGCTGGTCACTAG+TGG - chr4_3:58125786-58125805 Msa0650860:CDS 65.0%
! GCCATGGTGGGAGGATGCCG+CGG - chr4_3:58125114-58125133 Msa0650860:intron 70.0%
ACCGCGGCATCCTCCCACCA+TGG + chr4_3:58125118-58125137 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58120616 58125980 58120616 ID=Msa0650860;Name=Msa0650860
chr4_3 mRNA 58120616 58125980 58120616 ID=Msa0650860-mRNA-1;Parent=Msa0650860;Name=Msa0650860-mRNA-1;_AED=0.31;_eAED=0.31;_QI=102|1|0.87|1|1|1|8|300|329
chr4_3 exon 58120616 58121071 58120616 ID=Msa0650860-mRNA-1:exon:15351;Parent=Msa0650860-mRNA-1
chr4_3 exon 58121184 58121249 58121184 ID=Msa0650860-mRNA-1:exon:15350;Parent=Msa0650860-mRNA-1
chr4_3 exon 58121410 58121505 58121410 ID=Msa0650860-mRNA-1:exon:15349;Parent=Msa0650860-mRNA-1
chr4_3 exon 58123663 58123752 58123663 ID=Msa0650860-mRNA-1:exon:15348;Parent=Msa0650860-mRNA-1
chr4_3 exon 58123871 58123966 58123871 ID=Msa0650860-mRNA-1:exon:15347;Parent=Msa0650860-mRNA-1
chr4_3 exon 58124253 58124487 58124253 ID=Msa0650860-mRNA-1:exon:15346;Parent=Msa0650860-mRNA-1
chr4_3 exon 58124576 58124670 58124576 ID=Msa0650860-mRNA-1:exon:15345;Parent=Msa0650860-mRNA-1
chr4_3 exon 58125723 58125980 58125723 ID=Msa0650860-mRNA-1:exon:15344;Parent=Msa0650860-mRNA-1
chr4_3 five_prime_UTR 58125879 58125980 58125879 ID=Msa0650860-mRNA-1:five_prime_utr;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58125723 58125878 58125723 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58124576 58124670 58124576 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58124253 58124487 58124253 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58123871 58123966 58123871 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58123663 58123752 58123663 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58121410 58121505 58121410 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58121184 58121249 58121184 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 CDS 58120916 58121071 58120916 ID=Msa0650860-mRNA-1:cds;Parent=Msa0650860-mRNA-1
chr4_3 three_prime_UTR 58120616 58120915 58120616 ID=Msa0650860-mRNA-1:three_prime_utr;Parent=Msa0650860-mRNA-1
Gene Sequence

>Msa0650860

ATGGTTGCTCTGTTTTCTGTGCCATTGACCATATTCAAGGTTGTAGCTGAAACTGATGCTGACTCATTCCCTTCCTTTCTTCCTAAAGACGTCAACAGAATCAAAGACCCTTTCGCTCGAACTCTCGCTACACGGATTCAAAGACTTCCCGTTTCCGTTAAGTTCTCTGAAAATCCTATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAACAAGGAAAATCCAATTGTCCTTTTACATGGTTTTGACAGCTCATGTTTGGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTATTGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGGTTTGCTTCACTACTTTTCCTATGTTATGTTCATACCTTTCTCTCTTCATTTTAGTCATGTTTTCTTCTCTCTTATATATACATCAGAGAAACTTCCTTCCTGCGATGTTGTATCAAAGCGCGAACACTTTTACCAGTTTTGGAAATCCTACATTAAAAAGCCGATGATATTGGTTGGTCCAAGCCTTGGTTCTGCTGTTGCCATCGACTTTGCAATCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATACAGAAGGGACAGGAAACCTAGCAACTTTACCTAGAGCGGCAGCTTATGCTGGGATTGGCCGCTTGCATTGTTTATTGCCATGGTGGGAGGATGCCGCGGTTAATTTTATGATCAGTGGTGGCTACAATGTTGCTTCGCAGATAAAAATGGTAAAGCAGAAAACACTCATAATTTGGGGGGAGAATGACCGCATAATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGAATTACCTGATGCAATTATACGCCAAATACCCGATTGCGGTCACCTTCCTCATGTTGAAAGACCGGATTCTGTTGTGAAACTCATTAAGGAATTTGTTCAGAAGGATACAAAGACAGTAAATCAATATGTTTCATCATTATGA

Protein sequence

>Msa0650860

MVALFSVPLTIFKVVAETDADSFPSFLPKDVNRIKDPFARTLATRIQRLPVSVKFSENPIMSSCVKPLVQNKENPIVLLHGFDSSCLEWRYTYPLLEEAGIETWAIDILGWGFSDLGLLHYFSYVMFIPFSLHFSHVFFSLIYTSEKLPSCDVVSKREHFYQFWKSYIKKPMILVGPSLGSAVAIDFAINYPEAVEKLVLIDASVYTEGTGNLATLPRAAAYAGIGRLHCLLPWWEDAAVNFMISGGYNVASQIKMVKQKTLIIWGENDRIISNKLAVQLHCELPDAIIRQIPDCGHLPHVERPDSVVKLIKEFVQKDTKTVNQYVSSL*