AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108500 MtrunA17_Chr7g0242281 88.820 483 19 2 45 511 28 491 0.0 854
Msa1108500 MtrunA17_Chr5g0419261 27.543 403 227 15 123 496 60 426 1.71e-29 120
Msa1108500 MtrunA17_Chr5g0407831 25.272 459 258 13 91 496 139 565 1.48e-26 113
Msa1108500 MtrunA17_Chr4g0076831 24.818 411 245 10 110 491 99 474 3.40e-26 111
Msa1108500 MtrunA17_Chr4g0039601 26.214 412 238 13 110 491 87 462 3.19e-25 108
Msa1108500 MtrunA17_Chr7g0261271 25.321 312 187 5 77 377 15 291 2.44e-22 99.4
Msa1108500 MtrunA17_Chr7g0237291 26.337 243 143 7 142 376 141 355 5.12e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108500 AT5G01510.1 59.957 462 141 5 71 507 61 503 9.14e-173 497
Msa1108500 AT3G45890.1 24.229 454 267 11 44 457 121 537 8.81e-29 120
Msa1108500 AT5G49820.1 27.481 393 227 12 110 478 94 452 4.23e-25 108
Msa1108500 AT1G13770.1 23.632 402 245 13 123 496 52 419 6.78e-22 98.6
Msa1108500 AT2G31190.1 23.973 438 268 14 77 496 33 423 4.47e-21 96.3
Msa1108500 AT1G13770.4 26.336 262 151 7 115 359 44 280 5.71e-21 94.0
Msa1108500 AT2G31190.2 25.962 312 185 7 77 377 32 308 6.47e-21 95.5
Msa1108500 AT1G13770.3 26.772 254 144 7 123 359 52 280 1.72e-20 94.0
Msa1108500 AT1G13770.2 23.249 357 228 12 152 496 10 332 1.09e-17 85.1
Msa1108500 AT2G23470.1 26.446 242 136 5 69 294 64 279 1.02e-14 77.0

Find 121 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATGCATTGAATAATT+TGG 0.142568 7_3:+51413659 None:intergenic
GCATTTCAAGCTTTGGATAT+TGG 0.195174 7_3:-51419546 Msa1108500:CDS
GGTGAACCGAAAATTATTAT+TGG 0.215950 7_3:+51414614 None:intergenic
GCATACATTCTCCATTGTTT+TGG 0.217722 7_3:+51416551 None:intergenic
ATCATCAATTGAAATTTCTT+TGG 0.219699 7_3:+51413782 None:intergenic
TAACAGATCAGTGCCTTATT+TGG 0.223872 7_3:-51413445 Msa1108500:three_prime_UTR
AAAGATGATGATGTTAATAA+AGG 0.233940 7_3:-51419335 Msa1108500:CDS
GCAAGGAATCTTTCCAAATA+AGG 0.237095 7_3:+51413432 None:intergenic
CTTTGCAATTTCAGTAAATC+TGG 0.249782 7_3:-51415734 Msa1108500:CDS
CTGCTTCTGCTGCTGCCATC+AGG 0.250457 7_3:-51416888 Msa1108500:intron
CAATTGGTTGGTCTTGGTTT+GGG 0.254535 7_3:-51415215 Msa1108500:CDS
ATCTTTGAAACTGGAATGTT+TGG 0.255255 7_3:+51419352 None:intergenic
GAAAATATCCGGGATATAAC+TGG 0.266273 7_3:+51416397 None:intergenic
CATTCCATCCATCTTGTCTA+AGG 0.292124 7_3:+51414592 None:intergenic
TTAATGAACAGATACGTAAT+TGG 0.296848 7_3:-51418196 Msa1108500:intron
GAAGCATATGGCAGACATTC+TGG 0.299004 7_3:-51413947 Msa1108500:CDS
CATTCTGGCTTAGTGAGAAT+TGG 0.301398 7_3:-51413932 Msa1108500:CDS
GGTCTCTGCAAAACAGGTTT+GGG 0.302750 7_3:-51418132 Msa1108500:CDS
TCAATTGGTTGGTCTTGGTT+TGG 0.303687 7_3:-51415216 Msa1108500:CDS
ATAAAATCTTTAATCCTATC+TGG 0.305573 7_3:+51418073 None:intergenic
CGGGCGCTTATTCATTGGTC+TGG 0.322011 7_3:-51416688 Msa1108500:CDS
GCCTAATGGAATTGGAAAAT+AGG 0.325397 7_3:-51413872 Msa1108500:CDS
AACATCATCATCTTTGAAAC+TGG 0.327172 7_3:+51419343 None:intergenic
ATTCTACCTGCAGGCTTTCC+CGG 0.336688 7_3:-51418052 Msa1108500:intron
TAATATCTCAGGAAGAAGTT+TGG 0.345220 7_3:-51415250 Msa1108500:intron
TTGTACGGCTTCTTCATCTT+TGG 0.346675 7_3:-51415029 Msa1108500:CDS
TCTTTCTGCATTTCAAGCTT+TGG 0.346879 7_3:-51419553 Msa1108500:CDS
TTTCTATATATGTTAGTGTT+TGG 0.348846 7_3:-51413479 Msa1108500:three_prime_UTR
TCATCAATTGAAATTTCTTT+GGG 0.350605 7_3:+51413783 None:intergenic
TGCCAGTAGCCTAATGGAAT+TGG 0.355134 7_3:-51413880 Msa1108500:CDS
AAGATGATGATGTTAATAAA+GGG 0.356132 7_3:-51419334 Msa1108500:intron
GTAGCTCAATTGGTTGGTCT+TGG 0.361164 7_3:-51415221 Msa1108500:CDS
TTTCTTCCTTTGGCATCTCT+TGG 0.375549 7_3:-51416378 Msa1108500:CDS
TGGTTTGGGCATATTGATAC+TGG 0.380527 7_3:-51415201 Msa1108500:intron
ACATGCTTACCGTGTTAAAC+TGG 0.381456 7_3:+51414980 None:intergenic
TTGGGAAGTTGTAGCTCAAT+TGG 0.384419 7_3:-51415231 Msa1108500:CDS
GTTGGTGTAGGTTCTTTCTC+TGG 0.384652 7_3:-51416922 Msa1108500:CDS
AGGATTATCAAGGGTGATAT+TGG 0.393461 7_3:-51419185 Msa1108500:CDS
CCCCTTCACTTGCAGGCTGT+TGG 0.399709 7_3:-51416940 Msa1108500:intron
AATATCTCAGGAAGAAGTTT+GGG 0.400898 7_3:-51415249 Msa1108500:intron
TGGAATTATTTCAGGATGCT+TGG 0.402637 7_3:-51414684 Msa1108500:intron
GCAGACTTCATTGGCAGTGC+TGG 0.407400 7_3:-51416530 Msa1108500:CDS
CATCAACTTGGTTGATTGTA+CGG 0.407754 7_3:-51415044 Msa1108500:CDS
AGGTCTCTGCAAAACAGGTT+TGG 0.411007 7_3:-51418133 Msa1108500:CDS
TTCCAATTCCATTAGGCTAC+TGG 0.411161 7_3:+51413878 None:intergenic
TAATTTGGCTGATCACAGTT+TGG 0.418802 7_3:+51413674 None:intergenic
TACTCAACAATTAAATTTGA+AGG 0.423130 7_3:-51413808 Msa1108500:CDS
TGCCAAAGGAAGAAAATATC+CGG 0.429711 7_3:+51416386 None:intergenic
TAGTGAGAATTGGGAGAGAA+AGG 0.431792 7_3:-51413922 Msa1108500:CDS
AGGATAGGTCTCTGCAAAAC+AGG 0.433677 7_3:-51418138 Msa1108500:CDS
TCCAAATTCTAACATGGGTC+AGG 0.436102 7_3:-51419616 None:intergenic
TAACATGGGTCAGGTCAAAT+CGG 0.437566 7_3:-51419607 None:intergenic
GGGCGCTTATTCATTGGTCT+GGG 0.440760 7_3:-51416687 Msa1108500:CDS
ATTCTGGCTTAGTGAGAATT+GGG 0.446216 7_3:-51413931 Msa1108500:CDS
TTTGAAACTGGAATGTTTGG+AGG 0.455415 7_3:+51419355 None:intergenic
AGCAGCAGAAGCAGCTGCTG+TGG 0.459258 7_3:+51416897 None:intergenic
AAAAGTTGAAAGATGCTGAA+TGG 0.461318 7_3:-51413833 Msa1108500:CDS
CGGTTCACCCTTAGACAAGA+TGG 0.462228 7_3:-51414600 Msa1108500:CDS
AAAGTTGAAAGATGCTGAAT+GGG 0.463223 7_3:-51413832 Msa1108500:CDS
CACTTGCAGGCTGTTGGTGT+AGG 0.466951 7_3:-51416934 Msa1108500:intron
TCAACTTGCCAGTAGCCTAA+TGG 0.467930 7_3:-51413886 Msa1108500:CDS
GACTATCCTGGCTTCCAGAT+AGG 0.471080 7_3:-51418087 Msa1108500:CDS
CTGAATGTAACCTGGAACAG+TGG 0.482339 7_3:+51414768 None:intergenic
TCTCGGTATTGCGAAGCATA+TGG 0.483109 7_3:-51413959 Msa1108500:CDS
AGATTTCCAAATCGCCCACC+TGG 0.493488 7_3:+51416587 None:intergenic
TTTGCAATTTCAGTAAATCT+GGG 0.495289 7_3:-51415733 Msa1108500:CDS
AACATGGGTCAGGTCAAATC+GGG 0.495509 7_3:-51419606 Msa1108500:CDS
AGTGAGAATTGGGAGAGAAA+GGG 0.498020 7_3:-51413921 Msa1108500:CDS
ATCTCTTGGAAATCTTACTA+AGG 0.499636 7_3:-51416364 Msa1108500:intron
TTTAATCCTATCTGGAAGCC+AGG 0.499967 7_3:+51418081 None:intergenic
CCATTCTAGTTGAGGAGGAT+AGG 0.503587 7_3:-51418153 Msa1108500:CDS
CCTATCCTCCTCAACTAGAA+TGG 0.506141 7_3:+51418153 None:intergenic
TGGGTCTCAAAGGACGGCAT+TGG 0.507950 7_3:-51416717 Msa1108500:CDS
ATCCATCCAGTTACATTGGT+AGG 0.509746 7_3:+51417592 None:intergenic
CTACTTAATCATCTTTGAAG+AGG 0.510846 7_3:+51413542 None:intergenic
AGGACGGCATTGGAGCTGTC+GGG 0.514764 7_3:-51416707 Msa1108500:CDS
GAAGTTGTAGCTCAATTGGT+TGG 0.519901 7_3:-51415227 Msa1108500:CDS
ATACTGTACTTTCATCAACT+TGG 0.527353 7_3:-51415056 Msa1108500:CDS
TTAGAGGTGAAGGATTATCA+AGG 0.528187 7_3:-51419195 Msa1108500:intron
AGAATGTATGCAGACTTCAT+TGG 0.530282 7_3:-51416539 Msa1108500:CDS
AAGGACGGCATTGGAGCTGT+CGG 0.537285 7_3:-51416708 Msa1108500:CDS
CTTAGACAAGATGGATGGAA+TGG 0.537463 7_3:-51414591 Msa1108500:CDS
ATTATCAAGGGTGATATTGG+TGG 0.553974 7_3:-51419182 Msa1108500:CDS
CTTTGAATCACTCTAGAAGA+AGG 0.556421 7_3:+51415760 None:intergenic
TCCATCCAGTTACATTGGTA+GGG 0.564058 7_3:+51417593 None:intergenic
TAATTACCGGGAAAGCCTGC+AGG 0.564587 7_3:+51418046 None:intergenic
ACTTCATTGGCAGTGCTGGA+AGG 0.564752 7_3:-51416526 Msa1108500:intron
GTAGTGCTTTCTATACATGC+AGG 0.564807 7_3:-51413513 Msa1108500:three_prime_UTR
CATCTTTAGATGGGTCTCAA+AGG 0.567687 7_3:-51416727 Msa1108500:intron
GAATTCATGAAGAAAACTTA+CGG 0.568196 7_3:-51416665 Msa1108500:CDS
TCTGGGAGAGGTAGCAGCAA+AGG 0.572717 7_3:-51415716 Msa1108500:intron
GCCAAAGGAAGAAAATATCC+GGG 0.577066 7_3:+51416387 None:intergenic
CTGACAACCCAGTTATATCC+CGG 0.581410 7_3:-51416405 Msa1108500:CDS
GCAAACCATTCTAGTTGAGG+AGG 0.584171 7_3:-51418158 Msa1108500:CDS
ATTGCAAACCATTCTAGTTG+AGG 0.585851 7_3:-51418161 Msa1108500:CDS
GAAAGAGCCACGAGTCGGAT+CGG 0.586359 7_3:+51419570 None:intergenic
TAGAGGTGAAGGATTATCAA+GGG 0.589692 7_3:-51419194 Msa1108500:CDS
AATTTCAGTAAATCTGGGAG+AGG 0.591324 7_3:-51415728 Msa1108500:CDS
ATTCCATCCATCTTGTCTAA+GGG 0.591924 7_3:+51414593 None:intergenic
AAAATATCCGGGATATAACT+GGG 0.594359 7_3:+51416398 None:intergenic
ATAGCAATGGTACTGCTAAG+AGG 0.594451 7_3:-51419153 Msa1108500:intron
GTTCAACTCTCGAAAACCCC+GGG 0.601792 7_3:+51413698 None:intergenic
GTCTCTGCAAAACAGGTTTG+GGG 0.604028 7_3:-51418131 Msa1108500:CDS
GGTTGGAGCTACAAGTGTCT+CGG 0.609927 7_3:-51413976 Msa1108500:CDS
ATGTGAGAGCTAGCTTAGCA+AGG 0.615941 7_3:+51413415 None:intergenic
TTAAAACAGGCTATAGCAAG+AGG 0.616791 7_3:-51415793 Msa1108500:intron
AGGATGCTTGGATTGCAACA+AGG 0.617496 7_3:-51414672 Msa1108500:CDS
TCGACGATGATCCAAAACAA+TGG 0.620424 7_3:-51416562 Msa1108500:CDS
TCACCCTTAGACAAGATGGA+TGG 0.624194 7_3:-51414596 Msa1108500:CDS
TTTAGATGGGTCTCAAAGGA+CGG 0.625244 7_3:-51416723 Msa1108500:intron
TTCAGTTCTCCAGTTTAACA+CGG 0.628698 7_3:-51414989 Msa1108500:intron
CGTTCAACTCTCGAAAACCC+CGG 0.635271 7_3:+51413697 None:intergenic
CTCCTGATAAAAGACTATCC+TGG 0.636408 7_3:-51418099 Msa1108500:CDS
AAATGAGAAATATATTCTTG+TGG 0.641580 7_3:-51414412 Msa1108500:CDS
AGATTTCCAAGAGATGCCAA+AGG 0.646763 7_3:+51416372 None:intergenic
AGGAAGAGAATATATTAGTG+TGG 0.649489 7_3:-51414652 Msa1108500:CDS
AGAAGCTCCGATCCGACTCG+TGG 0.652017 7_3:-51419577 Msa1108500:CDS
GATTTACTGAAATTGCAAAG+TGG 0.657297 7_3:+51415737 None:intergenic
ATGCAGAAAGAGCCACGAGT+CGG 0.667912 7_3:+51419565 None:intergenic
TTGGTGGAGAGATATAGCAA+TGG 0.703982 7_3:-51419166 Msa1108500:CDS
CATAGAATTTGAAAACTACG+AGG 0.721955 7_3:+51419380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATATTTTTTTATAACATT+TGG + chr7_3:51415620-51415639 None:intergenic 10.0%
!!! AAATTATTTTTAAACATAAG+AGG + chr7_3:51415968-51415987 None:intergenic 10.0%
!! TATAACAAAAGATAAAATAA+AGG + chr7_3:51416950-51416969 None:intergenic 10.0%
!! TATATCTAATATTATAATCT+AGG + chr7_3:51418697-51418716 None:intergenic 10.0%
!!! ATACTTTTTAAATTCTAAAA+TGG - chr7_3:51419231-51419250 Msa1108500:intron 10.0%
!!! GATTTGAGTTAATTAAATTA+AGG - chr7_3:51413709-51413728 Msa1108500:three_prime_UTR 15.0%
!!! AATGTAAATCAATATACTTT+TGG + chr7_3:51415655-51415674 None:intergenic 15.0%
!!! AAAGTATATTGATTTACATT+AGG - chr7_3:51415655-51415674 Msa1108500:intron 15.0%
!!! TTGATAATAATTTGAGAAAA+CGG - chr7_3:51415810-51415829 Msa1108500:intron 15.0%
!! TCAATTCACAATAATTATTA+TGG - chr7_3:51417122-51417141 Msa1108500:intron 15.0%
!! ATAAAAATGTATTCATAGAT+AGG + chr7_3:51417387-51417406 None:intergenic 15.0%
!! AAATTAAGAAAAACTAGATA+AGG + chr7_3:51417488-51417507 None:intergenic 15.0%
!!! AAAGATGATGATGTTAATAA+AGG - chr7_3:51413651-51413670 Msa1108500:three_prime_UTR 20.0%
!!! AAGATGATGATGTTAATAAA+GGG - chr7_3:51413652-51413671 Msa1108500:three_prime_UTR 20.0%
!!! GTTTATCTTATTTTGTTTAG+AGG - chr7_3:51413775-51413794 Msa1108500:CDS 20.0%
!! CTATGAATAAAAAATACTCA+TGG - chr7_3:51414472-51414491 Msa1108500:intron 20.0%
!! ATAAAATCTTTAATCCTATC+TGG + chr7_3:51414916-51414935 None:intergenic 20.0%
!! AAGAAATGTATGTTAATTAC+CGG + chr7_3:51414956-51414975 None:intergenic 20.0%
!!! GAGTATTTGATTAGTTTTTA+TGG - chr7_3:51415508-51415527 Msa1108500:intron 20.0%
!!! ATTTGATTAGTTTTTATGGT+TGG - chr7_3:51415512-51415531 Msa1108500:intron 20.0%
!!! TTTTTTCTATCACAAATGTA+TGG - chr7_3:51415985-51416004 Msa1108500:intron 20.0%
!! AAAGTCAAAATAACAAATAG+TGG + chr7_3:51416210-51416229 None:intergenic 20.0%
!!! TTGTTATTTTGACTTTTATG+TGG - chr7_3:51416214-51416233 Msa1108500:intron 20.0%
!!! TGTTTTTATATAAGCTATGT+TGG + chr7_3:51416922-51416941 None:intergenic 20.0%
!!! TCTATGAATACATTTTTATC+AGG - chr7_3:51417388-51417407 Msa1108500:intron 20.0%
!! TTATTGTATTAATGCAATGT+TGG - chr7_3:51417431-51417450 Msa1108500:intron 20.0%
!! ATATTCTACATTATATACAC+CGG - chr7_3:51417679-51417698 Msa1108500:intron 20.0%
!!! TTTTGAATTATTACTCTTCA+AGG - chr7_3:51418258-51418277 Msa1108500:intron 20.0%
!!! ATGAAGCCAATAATAATTTT+CGG - chr7_3:51418366-51418385 Msa1108500:intron 20.0%
!! AAATGAGAAATATATTCTTG+TGG - chr7_3:51418574-51418593 Msa1108500:intron 20.0%
!! AAAACAGTTTATAGTCTATA+TGG - chr7_3:51418871-51418890 Msa1108500:intron 20.0%
!! TACTCAACAATTAAATTTGA+AGG - chr7_3:51419178-51419197 Msa1108500:CDS 20.0%
!! TCATCAATTGAAATTTCTTT+GGG + chr7_3:51419206-51419225 None:intergenic 20.0%
!! ATCATCAATTGAAATTTCTT+TGG + chr7_3:51419207-51419226 None:intergenic 20.0%
!!! CTTTTTAAATTCTAAAATGG+TGG - chr7_3:51419234-51419253 Msa1108500:intron 20.0%
!!! AAAATATTTATTTTCACCTG+AGG - chr7_3:51419370-51419389 Msa1108500:CDS 20.0%
!! TTTCTATATATGTTAGTGTT+TGG - chr7_3:51419507-51419526 Msa1108500:intron 20.0%
! TGTTAATTTAGTTACGCTAT+AGG - chr7_3:51414210-51414229 Msa1108500:intron 25.0%
! GTTAATTTAGTTACGCTATA+GGG - chr7_3:51414211-51414230 Msa1108500:intron 25.0%
! AACATATACAAACACTAGAT+AGG + chr7_3:51414431-51414450 None:intergenic 25.0%
! CTTGATATTGCAGAAAATAA+TGG + chr7_3:51414611-51414630 None:intergenic 25.0%
!! CATTATTTTCTGCAATATCA+AGG - chr7_3:51414609-51414628 Msa1108500:CDS 25.0%
! TTATTGCATAAATGTCAAAG+TGG - chr7_3:51414720-51414739 Msa1108500:intron 25.0%
! TTAATGAACAGATACGTAAT+TGG - chr7_3:51414790-51414809 Msa1108500:CDS 25.0%
! AGAAATGTATGTTAATTACC+GGG + chr7_3:51414955-51414974 None:intergenic 25.0%
!! AACTTCACAACTTTAGAAAA+TGG - chr7_3:51415030-51415049 Msa1108500:CDS 25.0%
!! ACTTCACAACTTTAGAAAAT+GGG - chr7_3:51415031-51415050 Msa1108500:CDS 25.0%
!!! TGAAATGCTTTAAAACTTGA+TGG - chr7_3:51415109-51415128 Msa1108500:intron 25.0%
! ATAGAGAATGATAAGTAAAC+AGG + chr7_3:51415321-51415340 None:intergenic 25.0%
!! TGTTCCTATAAACTTTTTGA+TGG - chr7_3:51415704-51415723 Msa1108500:intron 25.0%
!!! TATTTTGACTTTTATGTGGT+TGG - chr7_3:51416218-51416237 Msa1108500:intron 25.0%
! TTTATGCTTTCATCTTTAGA+TGG - chr7_3:51416249-51416268 Msa1108500:intron 25.0%
! TTATGCTTTCATCTTTAGAT+GGG - chr7_3:51416250-51416269 Msa1108500:intron 25.0%
! GAATTCATGAAGAAAACTTA+CGG - chr7_3:51416321-51416340 Msa1108500:intron 25.0%
! ATTTCCATACAAAAACAAGA+AGG + chr7_3:51416496-51416515 None:intergenic 25.0%
! AAAAGATGTAGCTTATTGTT+AGG - chr7_3:51416730-51416749 Msa1108500:intron 25.0%
!! TACTAGCATAAGTACTTTTA+GGG - chr7_3:51416832-51416851 Msa1108500:intron 25.0%
!!! AGTTTTAATAGTAATCTGCT+TGG + chr7_3:51417042-51417061 None:intergenic 25.0%
! TTTGGATTTGACATTAAAAC+AGG - chr7_3:51417180-51417199 Msa1108500:intron 25.0%
! TTTGCAATTTCAGTAAATCT+GGG - chr7_3:51417253-51417272 Msa1108500:intron 25.0%
! ATTTCATATCTATAAAGCCT+TGG - chr7_3:51417325-51417344 Msa1108500:intron 25.0%
! TTTCATATCTATAAAGCCTT+GGG - chr7_3:51417326-51417345 Msa1108500:intron 25.0%
!! AAGAATCTTGAATCAGTTTT+TGG + chr7_3:51417514-51417533 None:intergenic 25.0%
!! AAAAACTGATTCAAGATTCT+TGG - chr7_3:51417513-51417532 Msa1108500:intron 25.0%
!! AAAACTGATTCAAGATTCTT+GGG - chr7_3:51417514-51417533 Msa1108500:intron 25.0%
! TTAGGTTAAGATTATGCTAA+TGG - chr7_3:51417596-51417615 Msa1108500:intron 25.0%
!! TGTAATTTTGTCATGAATAC+CGG + chr7_3:51417701-51417720 None:intergenic 25.0%
! TTGTTTCATCATAATATCTC+AGG - chr7_3:51417725-51417744 Msa1108500:intron 25.0%
!! TGGTAAACCACATAATTTTT+AGG - chr7_3:51417805-51417824 Msa1108500:intron 25.0%
!! AAGGTATCCTAAAAATTATG+TGG + chr7_3:51417815-51417834 None:intergenic 25.0%
! AAAGCTAAAAGAATGTAACA+TGG + chr7_3:51417876-51417895 None:intergenic 25.0%
!! GTACAGTATATGATTTTACA+AGG + chr7_3:51417919-51417938 None:intergenic 25.0%
!! TGATTTGTCATTGTTAAGAT+TGG + chr7_3:51418080-51418099 None:intergenic 25.0%
! TGCAAAAAATAGTTACAACA+AGG + chr7_3:51418148-51418167 None:intergenic 25.0%
! TTACATTCAGATAAATTCAG+TGG - chr7_3:51418231-51418250 Msa1108500:intron 25.0%
!!! AGTTTTTTCAATTTTCCGAT+TGG - chr7_3:51418282-51418301 Msa1108500:intron 25.0%
!!! CTATTATCAGAGTTTTATGA+AGG - chr7_3:51418455-51418474 Msa1108500:intron 25.0%
! TTTCATAATACGTGTCATAA+TGG - chr7_3:51418518-51418537 Msa1108500:intron 25.0%
!!! GAAGTTTTATGTTTCTTTCA+AGG - chr7_3:51418619-51418638 Msa1108500:intron 25.0%
! TAATTCTCATAAGCGAAATA+AGG + chr7_3:51418649-51418668 None:intergenic 25.0%
! TTTCGCTTATGAGAATTAAT+TGG - chr7_3:51418651-51418670 Msa1108500:intron 25.0%
! ATTATAATCTAGGTCAAACA+GGG + chr7_3:51418687-51418706 None:intergenic 25.0%
! TATTATAATCTAGGTCAAAC+AGG + chr7_3:51418688-51418707 None:intergenic 25.0%
!!! GTTGAAGATTTTAGGATAAA+TGG - chr7_3:51418739-51418758 Msa1108500:intron 25.0%
!!! CTTATTTTGATAAGCTCTTT+AGG - chr7_3:51418843-51418862 Msa1108500:intron 25.0%
!!! TTCATTTTTCTTAATGATCC+CGG - chr7_3:51419270-51419289 Msa1108500:intron 25.0%
! TGCTTATGCATTGAATAATT+TGG + chr7_3:51419330-51419349 None:intergenic 25.0%
CATAGAATTTGAAAACTACG+AGG + chr7_3:51413609-51413628 None:intergenic 30.0%
!! ATCTTTGAAACTGGAATGTT+TGG + chr7_3:51413637-51413656 None:intergenic 30.0%
!! AACATCATCATCTTTGAAAC+TGG + chr7_3:51413646-51413665 None:intergenic 30.0%
! TAACCTCTTTGCATGTTTTA+AGG - chr7_3:51413683-51413702 Msa1108500:three_prime_UTR 30.0%
!! AACCTCTTTGCATGTTTTAA+GGG - chr7_3:51413684-51413703 Msa1108500:three_prime_UTR 30.0%
!!! CTTATTTTGTTTAGAGGTGA+AGG - chr7_3:51413781-51413800 Msa1108500:CDS 30.0%
TGCTTAACTATACCATTTGT+TGG - chr7_3:51413860-51413879 Msa1108500:CDS 30.0%
AAGTACACAATACCAACAAA+TGG + chr7_3:51413875-51413894 None:intergenic 30.0%
TATATGTTTCCGTGTATCAT+AGG - chr7_3:51414443-51414462 Msa1108500:intron 30.0%
! GCAAATACAATCTAAAACCT+TGG + chr7_3:51414514-51414533 None:intergenic 30.0%
!! CAGAAAATAATGGACAAATG+TGG + chr7_3:51414601-51414620 None:intergenic 30.0%
TTAAAACCTTGCTTGTTTCA+TGG - chr7_3:51414668-51414687 Msa1108500:CDS 30.0%
! AAAGATTTTATTCTACCTGC+AGG - chr7_3:51414925-51414944 Msa1108500:intron 30.0%
CTAAAGTTGTGAAGTTTAAC+AGG + chr7_3:51415026-51415045 None:intergenic 30.0%
AGAATGAGCAAACCTATTAA+CGG + chr7_3:51415083-51415102 None:intergenic 30.0%
! TAATAGGTTTGCTCATTCTT+TGG - chr7_3:51415084-51415103 Msa1108500:CDS 30.0%
ACTAGAAATTCATCTCATGT+TGG + chr7_3:51415149-51415168 None:intergenic 30.0%
TAGTGATACAATCAAGACTA+AGG - chr7_3:51415165-51415184 Msa1108500:intron 30.0%
AGTGATACAATCAAGACTAA+GGG - chr7_3:51415166-51415185 Msa1108500:intron 30.0%
TATCATTCTCTATATGATGC+AGG - chr7_3:51415328-51415347 Msa1108500:intron 30.0%
ACTCAAAATGCAAACATTCT+TGG + chr7_3:51415492-51415511 None:intergenic 30.0%
CCTTCCATCAAAAAGTTTAT+AGG + chr7_3:51415711-51415730 None:intergenic 30.0%
! CCTATAAACTTTTTGATGGA+AGG - chr7_3:51415708-51415727 Msa1108500:intron 30.0%
!!! TCACAGTTATTAGTTTTTCC+AGG - chr7_3:51416381-51416400 Msa1108500:CDS 30.0%
!!! AGTTATTAGTTTTTCCAGGT+GGG - chr7_3:51416385-51416404 Msa1108500:CDS 30.0%
AAAATATCCGGGATATAACT+GGG + chr7_3:51416591-51416610 None:intergenic 30.0%
ATCTCTTGGAAATCTTACTA+AGG - chr7_3:51416622-51416641 Msa1108500:intron 30.0%
TCTATTTAAACACGTGAAAC+TGG - chr7_3:51416653-51416672 Msa1108500:CDS 30.0%
! CTACTAGCATAAGTACTTTT+AGG - chr7_3:51416831-51416850 Msa1108500:intron 30.0%
TGTGAATTGATAGAGAGAAA+AGG + chr7_3:51417112-51417131 None:intergenic 30.0%
! CATACAGTTGTGTAATGTTT+TGG - chr7_3:51417162-51417181 Msa1108500:intron 30.0%
GATTTACTGAAATTGCAAAG+TGG + chr7_3:51417252-51417271 None:intergenic 30.0%
CTTTGCAATTTCAGTAAATC+TGG - chr7_3:51417252-51417271 Msa1108500:intron 30.0%
TTGTATTAATGCAATGTTGG+AGG - chr7_3:51417434-51417453 Msa1108500:intron 30.0%
! TAATTGATTCTCTGATCCAA+TGG - chr7_3:51417539-51417558 Msa1108500:intron 30.0%
! AATTGATTCTCTGATCCAAT+GGG - chr7_3:51417540-51417559 Msa1108500:intron 30.0%
GTTAAGATTATGCTAATGGT+AGG - chr7_3:51417600-51417619 Msa1108500:intron 30.0%
TAATATCTCAGGAAGAAGTT+TGG - chr7_3:51417736-51417755 Msa1108500:intron 30.0%
AATATCTCAGGAAGAAGTTT+GGG - chr7_3:51417737-51417756 Msa1108500:intron 30.0%
! GATACCTTTATTTCTTATCG+TGG - chr7_3:51417827-51417846 Msa1108500:intron 30.0%
! AGTATATGATTTTACAAGGC+CGG + chr7_3:51417915-51417934 None:intergenic 30.0%
ATACTGTACTTTCATCAACT+TGG - chr7_3:51417930-51417949 Msa1108500:intron 30.0%
TTTGTCATTGTTAAGATTGG+TGG + chr7_3:51418077-51418096 None:intergenic 30.0%
TCGTTCATTAGAACAAAGAT+CGG + chr7_3:51418109-51418128 None:intergenic 30.0%
GAATTTATCTGAATGTAACC+TGG + chr7_3:51418229-51418248 None:intergenic 30.0%
TTTCCGATTGGAATTATTTC+AGG - chr7_3:51418294-51418313 Msa1108500:intron 30.0%
CATCCTGAAATAATTCCAAT+CGG + chr7_3:51418300-51418319 None:intergenic 30.0%
AGGAAGAGAATATATTAGTG+TGG - chr7_3:51418334-51418353 Msa1108500:intron 30.0%
GGTGAACCGAAAATTATTAT+TGG + chr7_3:51418375-51418394 None:intergenic 30.0%
! AATGGAGAGATCTCATTTTA+TGG - chr7_3:51418413-51418432 Msa1108500:intron 30.0%
! TCGTTACAGTTGAAGATTTT+AGG - chr7_3:51418731-51418750 Msa1108500:intron 30.0%
! ACCTATTTTCCAATTCCATT+AGG + chr7_3:51419118-51419137 None:intergenic 30.0%
AAAAGTTGAAAGATGCTGAA+TGG - chr7_3:51419153-51419172 Msa1108500:intron 30.0%
AAAGTTGAAAGATGCTGAAT+GGG - chr7_3:51419154-51419173 Msa1108500:CDS 30.0%
!! TCATTTTTCTTAATGATCCC+GGG - chr7_3:51419271-51419290 Msa1108500:intron 30.0%
! TCAATTTTCTGAATAACCTC+AGG + chr7_3:51419389-51419408 None:intergenic 30.0%
! CTACTTAATCATCTTTGAAG+AGG + chr7_3:51419447-51419466 None:intergenic 30.0%
TCTTTCTGCATTTCAAGCTT+TGG - chr7_3:51413433-51413452 Msa1108500:three_prime_UTR 35.0%
!! GCATTTCAAGCTTTGGATAT+TGG - chr7_3:51413440-51413459 Msa1108500:three_prime_UTR 35.0%
! TTTGAAACTGGAATGTTTGG+AGG + chr7_3:51413634-51413653 None:intergenic 35.0%
AACCCTTAAAACATGCAAAG+AGG + chr7_3:51413689-51413708 None:intergenic 35.0%
TTAGAGGTGAAGGATTATCA+AGG - chr7_3:51413791-51413810 Msa1108500:CDS 35.0%
TAGAGGTGAAGGATTATCAA+GGG - chr7_3:51413792-51413811 Msa1108500:CDS 35.0%
AGGATTATCAAGGGTGATAT+TGG - chr7_3:51413801-51413820 Msa1108500:CDS 35.0%
ATTATCAAGGGTGATATTGG+TGG - chr7_3:51413804-51413823 Msa1108500:CDS 35.0%
!! CTTCTGAAGTTTGGAGATTA+TGG - chr7_3:51414077-51414096 Msa1108500:intron 35.0%
! ACACTTGGTGGTACTAAATA+GGG - chr7_3:51414264-51414283 Msa1108500:intron 35.0%
!! AAGAAGTATCGATGCTACAT+AGG + chr7_3:51414352-51414371 None:intergenic 35.0%
! GCATCGATACTTCTTATAGA+AGG - chr7_3:51414357-51414376 Msa1108500:intron 35.0%
GATACTTCTTATAGAAGGTG+TGG - chr7_3:51414362-51414381 Msa1108500:intron 35.0%
CACTAGATAGGATTGAATGT+AGG + chr7_3:51414419-51414438 None:intergenic 35.0%
! CAATCTAAAACCTTGGAAAC+AGG + chr7_3:51414507-51414526 None:intergenic 35.0%
TCAAGGATCACGAATAAATG+CGG - chr7_3:51414626-51414645 Msa1108500:CDS 35.0%
CATATTCCATGAAACAAGCA+AGG + chr7_3:51414677-51414696 None:intergenic 35.0%
TGCATAAATGTCAAAGTGGT+TGG - chr7_3:51414724-51414743 Msa1108500:intron 35.0%
! ATTGCAAACCATTCTAGTTG+AGG - chr7_3:51414825-51414844 Msa1108500:intron 35.0%
TGAAACATCTTCCCGTTAAT+AGG - chr7_3:51415068-51415087 Msa1108500:CDS 35.0%
GAATGAGCAAACCTATTAAC+GGG + chr7_3:51415082-51415101 None:intergenic 35.0%
! CAGTTGATGTTTCACATTCA+CGG - chr7_3:51415245-51415264 Msa1108500:intron 35.0%
! CTTCATCGATTAGATGAAGT+TGG - chr7_3:51415288-51415307 Msa1108500:intron 35.0%
ATCGATTAGATGAAGTTGGA+GGG - chr7_3:51415292-51415311 Msa1108500:intron 35.0%
TTCTCTATATGATGCAGGAT+CGG - chr7_3:51415333-51415352 Msa1108500:intron 35.0%
ACATATCCATCCAGTTACAT+TGG + chr7_3:51415401-51415420 None:intergenic 35.0%
TTGAATGTAACCACACATGT+CGG - chr7_3:51415838-51415857 Msa1108500:intron 35.0%
AAAGTTGACAATTCACCTGA+TGG + chr7_3:51416116-51416135 None:intergenic 35.0%
!!! CAGTTATTAGTTTTTCCAGG+TGG - chr7_3:51416384-51416403 Msa1108500:CDS 35.0%
! GCATACATTCTCCATTGTTT+TGG + chr7_3:51416438-51416457 None:intergenic 35.0%
AGAATGTATGCAGACTTCAT+TGG - chr7_3:51416447-51416466 Msa1108500:intron 35.0%
!!! CATGCCTTCTTGTTTTTGTA+TGG - chr7_3:51416489-51416508 Msa1108500:intron 35.0%
TAAAGAAACCCTTACCACAA+TGG - chr7_3:51416536-51416555 Msa1108500:CDS 35.0%
ATGAGATACCATTGTGGTAA+GGG + chr7_3:51416547-51416566 None:intergenic 35.0%
GAAAATATCCGGGATATAAC+TGG + chr7_3:51416592-51416611 None:intergenic 35.0%
TGCCAAAGGAAGAAAATATC+CGG + chr7_3:51416603-51416622 None:intergenic 35.0%
AATTAGCTAAAAACAGCCGA+TGG + chr7_3:51416887-51416906 None:intergenic 35.0%
TTAAAACAGGCTATAGCAAG+AGG - chr7_3:51417193-51417212 Msa1108500:intron 35.0%
! CTTTGAATCACTCTAGAAGA+AGG + chr7_3:51417229-51417248 None:intergenic 35.0%
AATTTCAGTAAATCTGGGAG+AGG - chr7_3:51417258-51417277 Msa1108500:intron 35.0%
!! AAGCTATTGATGACGCAATT+AGG - chr7_3:51417578-51417597 Msa1108500:intron 35.0%
! GTATATGATTTTACAAGGCC+GGG + chr7_3:51417914-51417933 None:intergenic 35.0%
CATCAACTTGGTTGATTGTA+CGG - chr7_3:51417942-51417961 Msa1108500:intron 35.0%
TTCAGTTCTCCAGTTTAACA+CGG - chr7_3:51417997-51418016 Msa1108500:intron 35.0%
TTCATTAGAACAAAGATCGG+TGG + chr7_3:51418106-51418125 None:intergenic 35.0%
TGGAATTATTTCAGGATGCT+TGG - chr7_3:51418302-51418321 Msa1108500:intron 35.0%
ATTCCATCCATCTTGTCTAA+GGG + chr7_3:51418396-51418415 None:intergenic 35.0%
ATCTTCAACTGTAACGATCA+TGG + chr7_3:51418728-51418747 None:intergenic 35.0%
! TGAGTACTTGTGACACTTTT+TGG - chr7_3:51418802-51418821 Msa1108500:intron 35.0%
!! GAGTACTTGTGACACTTTTT+GGG - chr7_3:51418803-51418822 Msa1108500:intron 35.0%
AGTACTAGTTGACCTTATGA+AGG - chr7_3:51418989-51419008 Msa1108500:intron 35.0%
!! ATTCTGGCTTAGTGAGAATT+GGG - chr7_3:51419055-51419074 Msa1108500:intron 35.0%
GCCTAATGGAATTGGAAAAT+AGG - chr7_3:51419114-51419133 Msa1108500:intron 35.0%
! CATTTTTCTTAATGATCCCG+GGG - chr7_3:51419272-51419291 Msa1108500:intron 35.0%
TAATTTGGCTGATCACAGTT+TGG + chr7_3:51419315-51419334 None:intergenic 35.0%
! TAACAGATCAGTGCCTTATT+TGG - chr7_3:51419541-51419560 Msa1108500:CDS 35.0%
GCAAGGAATCTTTCCAAATA+AGG + chr7_3:51419557-51419576 None:intergenic 35.0%
TTGGTGGAGAGATATAGCAA+TGG - chr7_3:51413820-51413839 Msa1108500:CDS 40.0%
ATAGCAATGGTACTGCTAAG+AGG - chr7_3:51413833-51413852 Msa1108500:CDS 40.0%
GTTCTATGAAACACAGACAC+CGG - chr7_3:51413904-51413923 Msa1108500:CDS 40.0%
GTAATTACCCCGACACATAT+CGG - chr7_3:51413978-51413997 Msa1108500:CDS 40.0%
TGTTAGTGTCCGATATGTGT+CGG + chr7_3:51413990-51414009 None:intergenic 40.0%
!! GGTTGTTGTCTTCTGAAGTT+TGG - chr7_3:51414068-51414087 Msa1108500:intron 40.0%
! GACACTTGGTGGTACTAAAT+AGG - chr7_3:51414263-51414282 Msa1108500:intron 40.0%
TAGCTGATGCCTATGATACA+CGG + chr7_3:51414455-51414474 None:intergenic 40.0%
!!! CTATTTTGACCAAAACGCCA+AGG - chr7_3:51414545-51414564 Msa1108500:intron 40.0%
AAATGTGGCTGCAAATGCAT+TGG + chr7_3:51414586-51414605 None:intergenic 40.0%
CAAGGATCACGAATAAATGC+GGG - chr7_3:51414627-51414646 Msa1108500:CDS 40.0%
CTCCTGATAAAAGACTATCC+TGG - chr7_3:51414887-51414906 Msa1108500:intron 40.0%
! AGCCAGGATAGTCTTTTATC+AGG + chr7_3:51414892-51414911 None:intergenic 40.0%
TTTAATCCTATCTGGAAGCC+AGG + chr7_3:51414908-51414927 None:intergenic 40.0%
ACACTTGCACAAGAGTTCAA+AGG - chr7_3:51415189-51415208 Msa1108500:intron 40.0%
! CATCGATTAGATGAAGTTGG+AGG - chr7_3:51415291-51415310 Msa1108500:intron 40.0%
TCCATCCAGTTACATTGGTA+GGG + chr7_3:51415396-51415415 None:intergenic 40.0%
ATCCATCCAGTTACATTGGT+AGG + chr7_3:51415397-51415416 None:intergenic 40.0%
TAGGAGACTTGAAGTGACTA+TGG + chr7_3:51415428-51415447 None:intergenic 40.0%
AGTCACTTCAAGTCTCCTAA+AGG - chr7_3:51415429-51415448 Msa1108500:intron 40.0%
AGCAACAATGACATGCCTTT+AGG + chr7_3:51415447-51415466 None:intergenic 40.0%
TCTCATTGTGCATGTCAATG+AGG - chr7_3:51415587-51415606 Msa1108500:intron 40.0%
GGAACATATACAACGACTAG+AGG + chr7_3:51415690-51415709 None:intergenic 40.0%
CAACCTATGAAGCACATACA+CGG - chr7_3:51415758-51415777 Msa1108500:CDS 40.0%
GCATTGCACTTCTGATTGAA+GGG + chr7_3:51415893-51415912 None:intergenic 40.0%
AGCATTGCACTTCTGATTGA+AGG + chr7_3:51415894-51415913 None:intergenic 40.0%
AACATAAGAGGACACAGTGA+AGG + chr7_3:51415956-51415975 None:intergenic 40.0%
!! GTGAAGGGGAATTTTAACAC+AGG + chr7_3:51416035-51416054 None:intergenic 40.0%
TAAAATTCCCCTTCACTTGC+AGG - chr7_3:51416039-51416058 Msa1108500:intron 40.0%
CATCTTTAGATGGGTCTCAA+AGG - chr7_3:51416259-51416278 Msa1108500:intron 40.0%
TTTAGATGGGTCTCAAAGGA+CGG - chr7_3:51416263-51416282 Msa1108500:intron 40.0%
TCGACGATGATCCAAAACAA+TGG - chr7_3:51416424-51416443 Msa1108500:intron 40.0%
CATGAGATACCATTGTGGTA+AGG + chr7_3:51416548-51416567 None:intergenic 40.0%
! TCCCGGATATTTTCTTCCTT+TGG - chr7_3:51416598-51416617 Msa1108500:CDS 40.0%
GCCAAAGGAAGAAAATATCC+GGG + chr7_3:51416602-51416621 None:intergenic 40.0%
TTTCTTCCTTTGGCATCTCT+TGG - chr7_3:51416608-51416627 Msa1108500:intron 40.0%
AGATTTCCAAGAGATGCCAA+AGG + chr7_3:51416617-51416636 None:intergenic 40.0%
!! GATAGGTTCTAGAAGGTTCT+TGG - chr7_3:51416692-51416711 Msa1108500:CDS 40.0%
CTAGAAGGTTCTTGGTTAGT+TGG - chr7_3:51416700-51416719 Msa1108500:CDS 40.0%
AAAGCCTTCTTAGCAAACCT+TGG - chr7_3:51416777-51416796 Msa1108500:intron 40.0%
AAGCCTTCTTAGCAAACCTT+GGG - chr7_3:51416778-51416797 Msa1108500:intron 40.0%
!! GTACTTTTAGGGAGAGCTTA+TGG - chr7_3:51416843-51416862 Msa1108500:intron 40.0%
GAGCTTATGGAAACCACTTA+TGG - chr7_3:51416856-51416875 Msa1108500:intron 40.0%
AAGCTATGTTGGAGAACTCA+AGG + chr7_3:51416911-51416930 None:intergenic 40.0%
! TTGAAAGCATGAAACTCCCA+AGG + chr7_3:51417345-51417364 None:intergenic 40.0%
TTGGGAAGTTGTAGCTCAAT+TGG - chr7_3:51417755-51417774 Msa1108500:intron 40.0%
GAAGTTGTAGCTCAATTGGT+TGG - chr7_3:51417759-51417778 Msa1108500:intron 40.0%
!! TCAATTGGTTGGTCTTGGTT+TGG - chr7_3:51417770-51417789 Msa1108500:intron 40.0%
!! CAATTGGTTGGTCTTGGTTT+GGG - chr7_3:51417771-51417790 Msa1108500:intron 40.0%
! TGGTTTGGGCATATTGATAC+TGG - chr7_3:51417785-51417804 Msa1108500:intron 40.0%
GCTGCCACGATAAGAAATAA+AGG + chr7_3:51417834-51417853 None:intergenic 40.0%
GAATGTAACATGGCAACCAA+CGG + chr7_3:51417866-51417885 None:intergenic 40.0%
!!! TTCTTTTAGCTTTTGACCGC+AGG - chr7_3:51417883-51417902 Msa1108500:intron 40.0%
TTGTACGGCTTCTTCATCTT+TGG - chr7_3:51417957-51417976 Msa1108500:intron 40.0%
ACATGCTTACCGTGTTAAAC+TGG + chr7_3:51418009-51418028 None:intergenic 40.0%
! GTTTTACATTCCACTGTTCC+AGG - chr7_3:51418208-51418227 Msa1108500:intron 40.0%
CATTCCATCCATCTTGTCTA+AGG + chr7_3:51418397-51418416 None:intergenic 40.0%
CTTAGACAAGATGGATGGAA+TGG - chr7_3:51418395-51418414 Msa1108500:intron 40.0%
TCAACTGTAACGATCATGGA+AGG + chr7_3:51418724-51418743 None:intergenic 40.0%
CTAGTTGACCTTATGAAGGT+TGG - chr7_3:51418993-51419012 Msa1108500:intron 40.0%
TTGTAGCTCCAACCTTCATA+AGG + chr7_3:51419004-51419023 None:intergenic 40.0%
!! CATTCTGGCTTAGTGAGAAT+TGG - chr7_3:51419054-51419073 Msa1108500:intron 40.0%
TAGTGAGAATTGGGAGAGAA+AGG - chr7_3:51419064-51419083 Msa1108500:intron 40.0%
AGTGAGAATTGGGAGAGAAA+GGG - chr7_3:51419065-51419084 Msa1108500:intron 40.0%
TTCCAATTCCATTAGGCTAC+TGG + chr7_3:51419111-51419130 None:intergenic 40.0%
GTAGTGCTTTCTATACATGC+AGG - chr7_3:51419473-51419492 Msa1108500:intron 40.0%
TTAGTGTCCGATATGTGTCG+GGG + chr7_3:51413988-51414007 None:intergenic 45.0%
GTTAGTGTCCGATATGTGTC+GGG + chr7_3:51413989-51414008 None:intergenic 45.0%
AGCCTCTATTTGACGACACT+TGG - chr7_3:51414249-51414268 Msa1108500:intron 45.0%
! CACCAAGTGTCGTCAAATAG+AGG + chr7_3:51414254-51414273 None:intergenic 45.0%
CTCTATTTGACGACACTTGG+TGG - chr7_3:51414252-51414271 Msa1108500:intron 45.0%
TGGTGGTACTAAATAGGGTG+TGG - chr7_3:51414269-51414288 Msa1108500:intron 45.0%
ACATAGCAGCTATAGCGCAT+TGG + chr7_3:51414321-51414340 None:intergenic 45.0%
ACCTTGGAAACAGGCAAACA+CGG + chr7_3:51414498-51414517 None:intergenic 45.0%
! ACACAAAAGCCTTGGCGTTT+TGG + chr7_3:51414557-51414576 None:intergenic 45.0%
GGCAGTAAACACAAAAGCCT+TGG + chr7_3:51414565-51414584 None:intergenic 45.0%
! GCAAACCATTCTAGTTGAGG+AGG - chr7_3:51414828-51414847 Msa1108500:intron 45.0%
CCTATCCTCCTCAACTAGAA+TGG + chr7_3:51414836-51414855 None:intergenic 45.0%
! CCATTCTAGTTGAGGAGGAT+AGG - chr7_3:51414833-51414852 Msa1108500:intron 45.0%
AGGATAGGTCTCTGCAAAAC+AGG - chr7_3:51414848-51414867 Msa1108500:intron 45.0%
AGGTCTCTGCAAAACAGGTT+TGG - chr7_3:51414853-51414872 Msa1108500:intron 45.0%
GGTCTCTGCAAAACAGGTTT+GGG - chr7_3:51414854-51414873 Msa1108500:intron 45.0%
GTCTCTGCAAAACAGGTTTG+GGG - chr7_3:51414855-51414874 Msa1108500:intron 45.0%
CAGTTCCCTACCAATGTAAC+TGG - chr7_3:51415388-51415407 Msa1108500:intron 45.0%
TCCCTACCAATGTAACTGGA+TGG - chr7_3:51415392-51415411 Msa1108500:intron 45.0%
!! ATGGTTGGTTTGTGCACACT+TGG - chr7_3:51415527-51415546 Msa1108500:intron 45.0%
GTGCATGTCAATGAGGCTTA+CGG - chr7_3:51415594-51415613 Msa1108500:intron 45.0%
TGTCCGTGTATGTGCTTCAT+AGG + chr7_3:51415764-51415783 None:intergenic 45.0%
GTCAAGTATCCGGTTGTTGT+CGG + chr7_3:51415867-51415886 None:intergenic 45.0%
ACAACAACCGGATACTTGAC+AGG - chr7_3:51415867-51415886 Msa1108500:intron 45.0%
GTTGGTGTAGGTTCTTTCTC+TGG - chr7_3:51416064-51416083 Msa1108500:intron 45.0%
TGCTGCATGAGATACCATTG+TGG + chr7_3:51416553-51416572 None:intergenic 45.0%
CTGACAACCCAGTTATATCC+CGG - chr7_3:51416581-51416600 Msa1108500:CDS 45.0%
AACTGGACATAGTCTTTGCC+AGG - chr7_3:51416670-51416689 Msa1108500:CDS 45.0%
GACATAGTCTTTGCCAGGAT+AGG - chr7_3:51416675-51416694 Msa1108500:CDS 45.0%
!! TTGCCAGGATAGGTTCTAGA+AGG - chr7_3:51416685-51416704 Msa1108500:CDS 45.0%
!! GAACCTTCTAGAACCTATCC+TGG + chr7_3:51416691-51416710 None:intergenic 45.0%
AGCCTTCTTAGCAAACCTTG+GGG - chr7_3:51416779-51416798 Msa1108500:intron 45.0%
!! AACCCCAAGGTTTGCTAAGA+AGG + chr7_3:51416784-51416803 None:intergenic 45.0%
! AGCAAACCTTGGGGTTTGTT+CGG - chr7_3:51416788-51416807 Msa1108500:intron 45.0%
ACCACTTATGGCATGTCCAT+CGG - chr7_3:51416868-51416887 Msa1108500:intron 45.0%
CCTACTTACATGTGACCCAT+TGG + chr7_3:51417558-51417577 None:intergenic 45.0%
CCAATGGGTCACATGTAAGT+AGG - chr7_3:51417555-51417574 Msa1108500:intron 45.0%
!! GTAGCTCAATTGGTTGGTCT+TGG - chr7_3:51417765-51417784 Msa1108500:intron 45.0%
ACGGTAAGCATGTACTGTGT+GGG - chr7_3:51418016-51418035 Msa1108500:intron 45.0%
! ATGTACTGTGTGGGCTAATG+TGG - chr7_3:51418025-51418044 Msa1108500:intron 45.0%
TATTAAGCGTGCTCGCATAC+TGG - chr7_3:51418174-51418193 Msa1108500:CDS 45.0%
CTGAATGTAACCTGGAACAG+TGG + chr7_3:51418221-51418240 None:intergenic 45.0%
AGGATGCTTGGATTGCAACA+AGG - chr7_3:51418314-51418333 Msa1108500:intron 45.0%
TCACCCTTAGACAAGATGGA+TGG - chr7_3:51418390-51418409 Msa1108500:intron 45.0%
TACGTGTCATAATGGTGTGC+AGG - chr7_3:51418526-51418545 Msa1108500:intron 45.0%
TCATAATGGTGTGCAGGTAG+AGG - chr7_3:51418532-51418551 Msa1108500:intron 45.0%
TCTCGGTATTGCGAAGCATA+TGG - chr7_3:51419027-51419046 Msa1108500:intron 45.0%
GAAGCATATGGCAGACATTC+TGG - chr7_3:51419039-51419058 Msa1108500:intron 45.0%
TCAACTTGCCAGTAGCCTAA+TGG - chr7_3:51419100-51419119 Msa1108500:intron 45.0%
TGCCAGTAGCCTAATGGAAT+TGG - chr7_3:51419106-51419125 Msa1108500:intron 45.0%
! ATGTGAGAGCTAGCTTAGCA+AGG + chr7_3:51419574-51419593 None:intergenic 45.0%
!!! ATAAATAATTATGAATTTTT+AGG + chr7_3:51418484-51418503 None:intergenic 5.0%
!! ATAATTATTTATTCTAAATT+TGG - chr7_3:51418492-51418511 Msa1108500:intron 5.0%
!! TAATTATTTATTCTAAATTT+GGG - chr7_3:51418493-51418512 Msa1108500:intron 5.0%
ATGCAGAAAGAGCCACGAGT+CGG + chr7_3:51413424-51413443 None:intergenic 50.0%
!! CAGTGTCGATGTGTCGTATC+CGG + chr7_3:51413926-51413945 None:intergenic 50.0%
GTTAGCAGCAGCAATGCTTG+TGG - chr7_3:51414047-51414066 Msa1108500:intron 50.0%
GACTATCCTGGCTTCCAGAT+AGG - chr7_3:51414899-51414918 Msa1108500:intron 50.0%
ATTCTACCTGCAGGCTTTCC+CGG - chr7_3:51414934-51414953 Msa1108500:intron 50.0%
TAATTACCGGGAAAGCCTGC+AGG + chr7_3:51414943-51414962 None:intergenic 50.0%
TGAAGCACATACACGGACAC+TGG - chr7_3:51415765-51415784 Msa1108500:CDS 50.0%
CACATACACGGACACTGGAT+AGG - chr7_3:51415770-51415789 Msa1108500:CDS 50.0%
TTGTCGGATACCGACATGTG+TGG + chr7_3:51415851-51415870 None:intergenic 50.0%
TGTCGGTATCCGACAACAAC+CGG - chr7_3:51415855-51415874 Msa1108500:intron 50.0%
TGAAGGGCCTGTCAAGTATC+CGG + chr7_3:51415877-51415896 None:intergenic 50.0%
ACCAACAGCCTGCAAGTGAA+GGG + chr7_3:51416050-51416069 None:intergenic 50.0%
! GGGCGCTTATTCATTGGTCT+GGG - chr7_3:51416299-51416318 Msa1108500:intron 50.0%
! GTTTTTCCAGGTGGGCGATT+TGG - chr7_3:51416393-51416412 Msa1108500:CDS 50.0%
AGATTTCCAAATCGCCCACC+TGG + chr7_3:51416402-51416421 None:intergenic 50.0%
! ACTTCATTGGCAGTGCTGGA+AGG - chr7_3:51416460-51416479 Msa1108500:intron 50.0%
GTCAATCCGAACAAACCCCA+AGG + chr7_3:51416797-51416816 None:intergenic 50.0%
CATGGCAACCAACGGTATTG+TGG + chr7_3:51417858-51417877 None:intergenic 50.0%
! TTTTGACCGCAGGATACACC+CGG - chr7_3:51417893-51417912 Msa1108500:intron 50.0%
CACGGTAAGCATGTACTGTG+TGG - chr7_3:51418015-51418034 Msa1108500:intron 50.0%
CGGTTCACCCTTAGACAAGA+TGG - chr7_3:51418386-51418405 Msa1108500:intron 50.0%
GGTTGGAGCTACAAGTGTCT+CGG - chr7_3:51419010-51419029 Msa1108500:intron 50.0%
GTTCAACTCTCGAAAACCCC+GGG + chr7_3:51419291-51419310 None:intergenic 50.0%
CGTTCAACTCTCGAAAACCC+CGG + chr7_3:51419292-51419311 None:intergenic 50.0%
GAAAGAGCCACGAGTCGGAT+CGG + chr7_3:51413419-51413438 None:intergenic 55.0%
CGGATACGACACATCGACAC+TGG - chr7_3:51413924-51413943 Msa1108500:CDS 55.0%
GCCGTGTTTGCCTGTTTCCA+AGG - chr7_3:51414494-51414513 Msa1108500:intron 55.0%
CCAACAGCCTGCAAGTGAAG+GGG + chr7_3:51416049-51416068 None:intergenic 55.0%
CACCAACAGCCTGCAAGTGA+AGG + chr7_3:51416051-51416070 None:intergenic 55.0%
CACTTGCAGGCTGTTGGTGT+AGG - chr7_3:51416052-51416071 Msa1108500:intron 55.0%
TGGGTCTCAAAGGACGGCAT+TGG - chr7_3:51416269-51416288 Msa1108500:intron 55.0%
! AAGGACGGCATTGGAGCTGT+CGG - chr7_3:51416278-51416297 Msa1108500:intron 55.0%
GCTGTCGGGCGCTTATTCAT+TGG - chr7_3:51416293-51416312 Msa1108500:intron 55.0%
CGGGCGCTTATTCATTGGTC+TGG - chr7_3:51416298-51416317 Msa1108500:intron 55.0%
GCAGACTTCATTGGCAGTGC+TGG - chr7_3:51416456-51416475 Msa1108500:intron 55.0%
GCCGATGGACATGCCATAAG+TGG + chr7_3:51416872-51416891 None:intergenic 55.0%
TCTGGGAGAGGTAGCAGCAA+AGG - chr7_3:51417270-51417289 Msa1108500:intron 55.0%
TGGCAGCACCACAATACCGT+TGG - chr7_3:51417847-51417866 Msa1108500:intron 55.0%
! AGAAGCTCCGATCCGACTCG+TGG - chr7_3:51413409-51413428 Msa1108500:three_prime_UTR 60.0%
CCCCTTCACTTGCAGGCTGT+TGG - chr7_3:51416046-51416065 Msa1108500:intron 60.0%
AGCAGCAGAAGCAGCTGCTG+TGG + chr7_3:51416092-51416111 None:intergenic 60.0%
CTGCTTCTGCTGCTGCCATC+AGG - chr7_3:51416098-51416117 Msa1108500:intron 60.0%
! AGGACGGCATTGGAGCTGTC+GGG - chr7_3:51416279-51416298 Msa1108500:intron 60.0%
ACAAGGCCGGGTGTATCCTG+CGG + chr7_3:51417902-51417921 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 51413383 51419625 51413383 ID=Msa1108500;Name=Msa1108500
chr7_3 mRNA 51413383 51419625 51413383 ID=Msa1108500-mRNA-1;Parent=Msa1108500;Name=Msa1108500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.68|1|1|1|16|384|512
chr7_3 exon 51413383 51413997 51413383 ID=Msa1108500-mRNA-1:exon:10612;Parent=Msa1108500-mRNA-1
chr7_3 exon 51414368 51414460 51414368 ID=Msa1108500-mRNA-1:exon:10611;Parent=Msa1108500-mRNA-1
chr7_3 exon 51414574 51414692 51414574 ID=Msa1108500-mRNA-1:exon:10610;Parent=Msa1108500-mRNA-1
chr7_3 exon 51414779 51414839 51414779 ID=Msa1108500-mRNA-1:exon:10609;Parent=Msa1108500-mRNA-1
chr7_3 exon 51414990 51415103 51414990 ID=Msa1108500-mRNA-1:exon:10608;Parent=Msa1108500-mRNA-1
chr7_3 exon 51415202 51415261 51415202 ID=Msa1108500-mRNA-1:exon:10607;Parent=Msa1108500-mRNA-1
chr7_3 exon 51415717 51415806 51415717 ID=Msa1108500-mRNA-1:exon:10606;Parent=Msa1108500-mRNA-1
chr7_3 exon 51416365 51416437 51416365 ID=Msa1108500-mRNA-1:exon:10605;Parent=Msa1108500-mRNA-1
chr7_3 exon 51416527 51416621 51416527 ID=Msa1108500-mRNA-1:exon:10604;Parent=Msa1108500-mRNA-1
chr7_3 exon 51416653 51416740 51416653 ID=Msa1108500-mRNA-1:exon:10603;Parent=Msa1108500-mRNA-1
chr7_3 exon 51416889 51416947 51416889 ID=Msa1108500-mRNA-1:exon:10602;Parent=Msa1108500-mRNA-1
chr7_3 exon 51417606 51417658 51417606 ID=Msa1108500-mRNA-1:exon:10601;Parent=Msa1108500-mRNA-1
chr7_3 exon 51418053 51418207 51418053 ID=Msa1108500-mRNA-1:exon:10600;Parent=Msa1108500-mRNA-1
chr7_3 exon 51419154 51419213 51419154 ID=Msa1108500-mRNA-1:exon:10599;Parent=Msa1108500-mRNA-1
chr7_3 exon 51419335 51419420 51419335 ID=Msa1108500-mRNA-1:exon:10598;Parent=Msa1108500-mRNA-1
chr7_3 exon 51419524 51419625 51419524 ID=Msa1108500-mRNA-1:exon:10597;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51419524 51419625 51419524 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51419335 51419420 51419335 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51419154 51419213 51419154 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51418053 51418207 51418053 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51417606 51417658 51417606 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51416889 51416947 51416889 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51416653 51416740 51416653 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51416527 51416621 51416527 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51416365 51416437 51416365 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51415717 51415806 51415717 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51415202 51415261 51415202 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51414990 51415103 51414990 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51414779 51414839 51414779 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51414574 51414692 51414574 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51414368 51414460 51414368 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 CDS 51413767 51413997 51413767 ID=Msa1108500-mRNA-1:cds;Parent=Msa1108500-mRNA-1
chr7_3 three_prime_UTR 51413383 51413766 51413383 ID=Msa1108500-mRNA-1:three_prime_utr;Parent=Msa1108500-mRNA-1
Gene Sequence

>Msa1108500

ATGGGTCAGGTCAAATCGGGTCAAGTAGAAGCTCCGATCCGACTCGTGGCTCTTTCTGCATTTCAAGCTTTGGATATTGGAACTGAAGAAGAAGAAGAAGAAAAGTTGAAGAAAGTTAAGCCTCGTAGTTTTCAAATTCTATGTTCCTCCAAACATTCCAGTTTCAAAGATGATGATGTTAATAAAGGAGGTGAAGGATTATCAAGGGTGATATTGGTGGAGAGATATAGCAATGGTACTGCTAAGAGATACGTAATTGGTGATGATTCGCAATTGCAAACCATTCTAGTTGAGGAGGATAGGTCTCTGCAAAACAGGTTTGGGGTTTTGCATTCTCCTGATAAAAGACTATCCTGGCTTCCAGATAGGATTAAAGATTTTATTCTACCTGCAGGCTTTCCCGGATCGGTCTCAGATGACTATTTGCAATACATGTTGCTACAGTTCCCTACCAATGCTGTTGGTGTAGGTTCTTTCTCTGGAACCACAGCAGCTGCTTCTGCTGCTGCCATCAGATGGGTCTCAAAGGACGGCATTGGAGCTGTCGGGCGCTTATTCATTGGTCTGGGAATTCATGAAGAAAACTTACGGAAGCAGATGATCTTATTAGTTTTTCCAGGTGGGCGATTTGGAAATCTTTTCGACGATGATCCAAAACAATGGAGAATGTATGCAGACTTCATTGGCAGTGCTGGAAGCATTTTTGATCTGACAACCCAGTTATATCCCGGATATTTTCTTCCTTTGGCATCTCTTGGAAATCTTACTAAGGCTATAGCAAGAGGACTAAAAGATCCTTCTTCTAGAGTGATTCAAAGCCACTTTGCAATTTCAGTAAATCTGGGAGAGGTAGCAGCAAAGGAAGAAGTTTGGGAAGTTGTAGCTCAATTGGTTGGTCTTGGTTTGGGCATATTGATACTGGATACACCCGGCCTTGTAAAATCATATACTGTACTTTCATCAACTTGGTTGATTGTACGGCTTCTTCATCTTTGGCTACGCTACGAATCACTTTCAGTTCTCCAGTTTAACACGATAAATATTAAGCGTGCTCGCATACTGGTAAAATCACATGTTTTACATTCCACTGTTCCAGGATGCTTGGATTGCAACAAGGAAGAGAATATATTAGTGTGGTCACAGTTCATGAAGCCAATAATAATTTTCGGTTCACCCTTAGACAAGATGGATGGAATGGAGAGATCTCATTTTATGGTAGAGGCTCTTCTAGAGTTATATGCAAATGAGAAATATATTCTTGTGGTAAATCAGCAACTAGATGATTTGAAGTTTTATGTTTCTTTCAAGGTTGGAGCTACAAGTGTCTCGGTATTGCGAAGCATATGGCAGACATTCTGGCTTAGTGAGAATTGGGAGAGAAAGGGTAACGTCTGTGATCAACTTGCCAGTAGCCTAATGGAATTGGAAAATAGGTTTGATGATTTCATTCAAAAGTTGAAAGATGCTGAATGGGATACTCAACAATTAAATTTGAAGGTTCCCAAAGAAATTTCAATTGATGATATCAATACTTTTTAA

Protein sequence

>Msa1108500

MGQVKSGQVEAPIRLVALSAFQALDIGTEEEEEEKLKKVKPRSFQILCSSKHSSFKDDDVNKGGEGLSRVILVERYSNGTAKRYVIGDDSQLQTILVEEDRSLQNRFGVLHSPDKRLSWLPDRIKDFILPAGFPGSVSDDYLQYMLLQFPTNAVGVGSFSGTTAAASAAAIRWVSKDGIGAVGRLFIGLGIHEENLRKQMILLVFPGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLTTQLYPGYFLPLASLGNLTKAIARGLKDPSSRVIQSHFAISVNLGEVAAKEEVWEVVAQLVGLGLGILILDTPGLVKSYTVLSSTWLIVRLLHLWLRYESLSVLQFNTINIKRARILVKSHVLHSTVPGCLDCNKEENILVWSQFMKPIIIFGSPLDKMDGMERSHFMVEALLELYANEKYILVVNQQLDDLKFYVSFKVGATSVSVLRSIWQTFWLSENWERKGNVCDQLASSLMELENRFDDFIQKLKDAEWDTQQLNLKVPKEISIDDINTF*