AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090760 MtrunA17_Chr1g0210861 93.581 296 15 4 4 299 5 296 0.0 503
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090760 AT4G24175.1 49.362 235 110 3 74 299 67 301 1.96e-66 210
Msa0090760 AT4G24175.2 58.197 122 45 1 74 189 67 188 6.63e-40 139

Find 84 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACCATGCATTGTTTAAT+TGG 0.131679 1_2:+72857176 Msa0090760:three_prime_UTR
AAGCAAAACGTGCTGTTAAA+TGG 0.180888 1_2:+72854126 Msa0090760:CDS
CTTAAGGATGCGTTTGATTT+GGG 0.227086 1_2:-72854177 None:intergenic
CTGCAAGCTTTAACTGGCTT+GGG 0.238458 1_2:+72855122 Msa0090760:CDS
GGGTTGCAGGGTGGTTTCTT+TGG 0.241314 1_2:+72854277 Msa0090760:intron
GAATGTGGAACCGGAATTAA+TGG 0.241972 1_2:+72855058 Msa0090760:CDS
TTAATAACTAGAATAGTTAA+TGG 0.246308 1_2:+72857226 Msa0090760:three_prime_UTR
TTTAATTGGGATACATGATA+TGG 0.250940 1_2:+72857190 Msa0090760:three_prime_UTR
ACTTAAGGATGCGTTTGATT+TGG 0.288196 1_2:-72854178 None:intergenic
TAAGAGCTTCAAAGACAATT+TGG 0.326397 1_2:-72854301 None:intergenic
AAGGAGCTGCAAGCTTTAAC+TGG 0.329869 1_2:+72855116 Msa0090760:CDS
TTAAAGCTTGCAGCTCCTTA+TGG 0.340886 1_2:-72855112 None:intergenic
TGAAGCTCTTATGTTGGTTA+AGG 0.347145 1_2:+72854313 Msa0090760:CDS
ATTAATCCGTCCATTAATTC+CGG 0.350389 1_2:-72855068 None:intergenic
TTGAACTGAATAAACTTCAT+TGG 0.358907 1_2:-72856453 None:intergenic
CGTATCTTTGTGGATTGTTC+TGG 0.359479 1_2:-72853981 None:intergenic
AAGAAGTAGGGTGGTGGTGG+TGG 0.360485 1_2:-72853902 None:intergenic
AATGAAGTTTATTCAGTTCA+AGG 0.362430 1_2:+72856455 Msa0090760:CDS
CAAGTAACAAGGTGGTTTGA+TGG 0.384351 1_2:+72856404 Msa0090760:CDS
AAGTCGAGAAAGCAGAGATT+AGG 0.387346 1_2:+72857083 Msa0090760:CDS
AGCAAAACGTGCTGTTAAAT+GGG 0.390825 1_2:+72854127 Msa0090760:CDS
AAGTAGGGTGGTGGTGGTGG+TGG 0.392211 1_2:-72853899 None:intergenic
TAACCATGCATTGTTTAATT+GGG 0.393245 1_2:+72857177 Msa0090760:three_prime_UTR
AGTCGAGAAAGCAGAGATTA+GGG 0.396363 1_2:+72857084 Msa0090760:CDS
GTTACTTGACTATCATCATA+AGG 0.403754 1_2:-72856389 None:intergenic
TGGAAGAAGTAGGGTGGTGG+TGG 0.425595 1_2:-72853905 None:intergenic
GCTGCAAGCTTTAACTGGCT+TGG 0.428841 1_2:+72855121 Msa0090760:CDS
AATTTAGCAGTGGAAGAAGT+AGG 0.431717 1_2:-72853915 None:intergenic
TTCTTCTTCTTCCTCGGGAG+CGG 0.442048 1_2:-72854063 None:intergenic
TTCTTCTTCCTCGGGAGCGG+TGG 0.451245 1_2:-72854060 None:intergenic
CTTCACGCTTCAATTGGTTG+CGG 0.456802 1_2:-72854106 None:intergenic
TCATCATCCTCAGGATCATC+AGG 0.461465 1_2:-72855146 None:intergenic
CGGCGTCAGTTCAATTATAT+AGG 0.461984 1_2:+72854484 Msa0090760:CDS
TTGTCTCAGGAAAGTTGTTA+CGG 0.463853 1_2:+72855036 Msa0090760:intron
GATTGTTCTGGTGATGATGT+TGG 0.469722 1_2:-72853969 None:intergenic
AACAAAGGATTCTGACCATA+AGG 0.472766 1_2:+72855097 Msa0090760:CDS
CGGATGTTCGTGAAGGGAGG+CGG 0.476758 1_2:+72854464 Msa0090760:CDS
TGAGCCAACAAGTAGTATTA+CGG 0.477051 1_2:+72853841 Msa0090760:CDS
CGCCTCCCTTCACGAACATC+CGG 0.479937 1_2:-72854463 None:intergenic
TTTGATTTGGGGAGGAGAGA+AGG 0.481642 1_2:-72854165 None:intergenic
AGCAGAGATTAGGGCTAAGA+AGG 0.485364 1_2:+72857093 Msa0090760:CDS
AGAGAAACGACGTATCTTTG+TGG 0.489110 1_2:-72853991 None:intergenic
GTTGTTACGGAATGTGGAAC+CGG 0.489775 1_2:+72855049 Msa0090760:CDS
AGCCATGGCCAATGTCTTAG+AGG 0.494965 1_2:-72853864 None:intergenic
TATTACGGCCTCTAAGACAT+TGG 0.496331 1_2:+72853856 Msa0090760:CDS
AGGAAAGTTGTTACGGAATG+TGG 0.498289 1_2:+72855043 Msa0090760:intron
GAGGCCGTAATACTACTTGT+TGG 0.504889 1_2:-72853845 None:intergenic
TGCAAGCTTTAACTGGCTTG+GGG 0.514688 1_2:+72855123 Msa0090760:CDS
ATTTAGCAGTGGAAGAAGTA+GGG 0.518017 1_2:-72853914 None:intergenic
TCTTCTTCCTCGGGAGCGGT+GGG 0.518718 1_2:-72854059 None:intergenic
TTTGCAGGAGTTGAGAAAGC+TGG 0.520673 1_2:+72857003 Msa0090760:intron
TGTCTTTGAAGCTCTTATGT+TGG 0.520855 1_2:+72854307 Msa0090760:CDS
AGGTGTCGAGTATGATCGCC+AGG 0.526328 1_2:+72856475 Msa0090760:CDS
CAGTGGAAGAAGTAGGGTGG+TGG 0.529736 1_2:-72853908 None:intergenic
AAGTTCTCATCATCATCCTC+AGG 0.534020 1_2:-72855155 None:intergenic
ACGTGCTGTTAAATGGGGAA+TGG 0.548665 1_2:+72854133 Msa0090760:CDS
CGGATTAATAAAAGCAACAA+AGG 0.558941 1_2:+72855082 Msa0090760:CDS
TGGTGAAAGCGCAACAGCCA+TGG 0.562393 1_2:-72853879 None:intergenic
TATCCCAATTAAACAATGCA+TGG 0.568035 1_2:-72857180 None:intergenic
TGGGGCCGGATGTTCGTGAA+GGG 0.573714 1_2:+72854458 Msa0090760:CDS
TTTGCCACAGAGAATGGGGC+CGG 0.574948 1_2:+72854444 Msa0090760:intron
GGCCGGATGTTCGTGAAGGG+AGG 0.578608 1_2:+72854461 Msa0090760:CDS
TTAAGGATGCGTTTGATTTG+GGG 0.582362 1_2:-72854176 None:intergenic
CTTGGGGCCTGATGATCCTG+AGG 0.584420 1_2:+72855139 Msa0090760:CDS
TTCATTACCCACCGCTCCCG+AGG 0.585183 1_2:+72854052 Msa0090760:CDS
CAATATTCTCTGAAAGACTA+CGG 0.592264 1_2:-72857132 None:intergenic
TGCTCAAGAAACGAAGGCTA+CGG 0.598891 1_2:+72857042 Msa0090760:CDS
AGGATGCGTTTGATTTGGGG+AGG 0.600388 1_2:-72854173 None:intergenic
GGCCTCTAAGACATTGGCCA+TGG 0.604231 1_2:+72853862 Msa0090760:CDS
GATAGAAACTGAAGACGAGA+AGG 0.608891 1_2:+72855178 Msa0090760:CDS
TAGCAGTGGAAGAAGTAGGG+TGG 0.611157 1_2:-72853911 None:intergenic
TTCTCTTTATCTGCATCTCG+CGG 0.612272 1_2:+72854008 Msa0090760:CDS
GAAGGCTACGGATGAAGAAG+AGG 0.613694 1_2:+72857054 Msa0090760:CDS
ATGGGGCCGGATGTTCGTGA+AGG 0.614685 1_2:+72854457 Msa0090760:CDS
TGAAGACGAGAAGGATGATG+AGG 0.623936 1_2:+72855187 Msa0090760:CDS
GTTTGATGGTTTGATCAACA+AGG 0.631366 1_2:+72856418 Msa0090760:CDS
GCAAAACGTGCTGTTAAATG+GGG 0.636327 1_2:+72854128 Msa0090760:CDS
TAGTGCAGAAAATTTAGCAG+TGG 0.642939 1_2:-72853925 None:intergenic
ACTACGGAGAAAACGAGTGA+GGG 0.650965 1_2:-72857116 None:intergenic
GTGGAACCGGAATTAATGGA+CGG 0.654248 1_2:+72855062 Msa0090760:CDS
GCACTTTGCTCAAGAAACGA+AGG 0.664552 1_2:+72857036 Msa0090760:CDS
GACTACGGAGAAAACGAGTG+AGG 0.672547 1_2:-72857117 None:intergenic
ATGATGATAGTCAAGTAACA+AGG 0.710187 1_2:+72856393 Msa0090760:CDS
ATGATAGTCAAGTAACAAGG+TGG 0.715164 1_2:+72856396 Msa0090760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTTATAATAAAACATTA+TGG - chr1_2:72855290-72855309 None:intergenic 10.0%
!! TTAACACAATAATAAATATT+AGG + chr1_2:72855608-72855627 Msa0090760:intron 10.0%
!! TAACACAATAATAAATATTA+GGG + chr1_2:72855609-72855628 Msa0090760:intron 10.0%
!!! AACAATTTTATTGAAATATT+GGG - chr1_2:72855857-72855876 None:intergenic 10.0%
!! AAATATTAGATTATATTGTA+TGG - chr1_2:72856583-72856602 None:intergenic 10.0%
!! AAAAAATCATATATATTTAG+AGG + chr1_2:72856913-72856932 Msa0090760:intron 10.0%
!!! TTTTTGCTAAATTTTGTTTT+TGG + chr1_2:72854256-72854275 Msa0090760:intron 15.0%
!!! TTTTGCTAAATTTTGTTTTT+GGG + chr1_2:72854257-72854276 Msa0090760:intron 15.0%
!!! TGATGGTTAAAAATTTTATA+GGG + chr1_2:72855514-72855533 Msa0090760:intron 15.0%
!!! TATTGTGTTAAATATGTTTT+AGG - chr1_2:72855599-72855618 None:intergenic 15.0%
!! AACACAATAATAAATATTAG+GGG + chr1_2:72855610-72855629 Msa0090760:intron 15.0%
!!! GAACAATTTTATTGAAATAT+TGG - chr1_2:72855858-72855877 None:intergenic 15.0%
!! TTAATAACTAGAATAGTTAA+TGG + chr1_2:72857226-72857245 Msa0090760:three_prime_UTR 15.0%
!!! AAGTTGAAACTTTTCAAAAT+GGG - chr1_2:72854238-72854257 None:intergenic 20.0%
!!! AAAGTTGAAACTTTTCAAAA+TGG - chr1_2:72854239-72854258 None:intergenic 20.0%
!! ATTTCAAGATGAAAAAGAAA+AGG - chr1_2:72854345-72854364 None:intergenic 20.0%
!!! AAACAACTATTTTATGCAAT+TGG + chr1_2:72854812-72854831 Msa0090760:intron 20.0%
!! ATAATTAATGCAACACAAAT+TGG - chr1_2:72854876-72854895 None:intergenic 20.0%
!!! TAAGTTGATTAGAATTATTG+TGG + chr1_2:72854959-72854978 Msa0090760:intron 20.0%
!!! ACATGAATTGACTTAAAAAT+AGG + chr1_2:72855482-72855501 Msa0090760:intron 20.0%
!!! CATGAATTGACTTAAAAATA+GGG + chr1_2:72855483-72855502 Msa0090760:intron 20.0%
!!! AAATTTTTAACCATCACTTT+TGG - chr1_2:72855510-72855529 None:intergenic 20.0%
!!! GTGATGGTTAAAAATTTTAT+AGG + chr1_2:72855513-72855532 Msa0090760:intron 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG + chr1_2:72855571-72855590 Msa0090760:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr1_2:72855572-72855591 Msa0090760:intron 20.0%
!!! AAGTTAGTTTGTTTGTTATT+TGG + chr1_2:72855647-72855666 Msa0090760:intron 20.0%
!!! AGTTAGTTTGTTTGTTATTT+GGG + chr1_2:72855648-72855667 Msa0090760:intron 20.0%
!!! TTTTATTGAAATATTGGGAA+AGG - chr1_2:72855852-72855871 None:intergenic 20.0%
!! AAAAGATAAGATACATCATA+AGG - chr1_2:72856346-72856365 None:intergenic 20.0%
!! AAATTTCTTTCTCATTATGA+AGG + chr1_2:72856816-72856835 Msa0090760:intron 20.0%
! AACGAAGAAAAAACAACTTA+AGG - chr1_2:72854196-72854215 None:intergenic 25.0%
! ACACATTTAAATCAGTAAAG+CGG + chr1_2:72854569-72854588 Msa0090760:intron 25.0%
! AAAAATGGTACTATAAGCTA+AGG - chr1_2:72854914-72854933 None:intergenic 25.0%
! TGAATGACTATCAACAAAAA+TGG - chr1_2:72854929-72854948 None:intergenic 25.0%
! ATATAATTTGATCCATGTAG+CGG - chr1_2:72855266-72855285 None:intergenic 25.0%
! AAAACTATCAGAGAAAGATT+TGG - chr1_2:72855337-72855356 None:intergenic 25.0%
!!! ATTGGTCTTCTAATCTTTTT+TGG + chr1_2:72855407-72855426 Msa0090760:intron 25.0%
!!! TTGGTCTTCTAATCTTTTTT+GGG + chr1_2:72855408-72855427 Msa0090760:intron 25.0%
! TAGAGAGTAAAATGAAAAGT+TGG + chr1_2:72855559-72855578 Msa0090760:intron 25.0%
!! TATGTTAGGAACATTTCTTT+TGG - chr1_2:72855926-72855945 None:intergenic 25.0%
! GTGTTTGATTGTATAGTTAA+AGG + chr1_2:72855965-72855984 Msa0090760:intron 25.0%
! TATAGTTAAAGGTGAGTTAA+AGG + chr1_2:72855976-72855995 Msa0090760:intron 25.0%
! GTTAAAGGCAAAATGATTTA+TGG + chr1_2:72855991-72856010 Msa0090760:intron 25.0%
! TTGAGTATAAAAGTTACCTT+TGG + chr1_2:72856052-72856071 Msa0090760:intron 25.0%
!!! TGAAGAATTGAAGTTGATTT+TGG - chr1_2:72856159-72856178 None:intergenic 25.0%
! TAGGAAATTTAGTGCATATT+TGG - chr1_2:72856212-72856231 None:intergenic 25.0%
!! TATCTTTTGAGCATTTTATC+AGG + chr1_2:72856358-72856377 Msa0090760:intron 25.0%
! TTGAACTGAATAAACTTCAT+TGG - chr1_2:72856456-72856475 None:intergenic 25.0%
! AATGAAGTTTATTCAGTTCA+AGG + chr1_2:72856455-72856474 Msa0090760:CDS 25.0%
! TCAACCAAGTTTATATTACT+TGG + chr1_2:72856603-72856622 Msa0090760:intron 25.0%
! TTCACCAAGTAATATAAACT+TGG - chr1_2:72856610-72856629 None:intergenic 25.0%
! TCAACCAAGTTTATATTAAC+TGG + chr1_2:72856732-72856751 Msa0090760:intron 25.0%
! TTCACCAGTTAATATAAACT+TGG - chr1_2:72856739-72856758 None:intergenic 25.0%
! TTTATGTGATTCCTATCAAA+TGG + chr1_2:72856760-72856779 Msa0090760:intron 25.0%
!! AAAATATCTTCATCTTTTGC+AGG + chr1_2:72856988-72857007 Msa0090760:intron 25.0%
! TTAACCATGCATTGTTTAAT+TGG + chr1_2:72857176-72857195 Msa0090760:three_prime_UTR 25.0%
! TAACCATGCATTGTTTAATT+GGG + chr1_2:72857177-72857196 Msa0090760:three_prime_UTR 25.0%
! TTTAATTGGGATACATGATA+TGG + chr1_2:72857190-72857209 Msa0090760:three_prime_UTR 25.0%
!!! AAATTTTGTTTTTGGGTTGC+AGG + chr1_2:72854264-72854283 Msa0090760:intron 30.0%
!!! AATTTTGTTTTTGGGTTGCA+GGG + chr1_2:72854265-72854284 Msa0090760:intron 30.0%
TAAGAGCTTCAAAGACAATT+TGG - chr1_2:72854304-72854323 None:intergenic 30.0%
AATTGTTCTATTTGTGCTTG+TGG + chr1_2:72854368-72854387 Msa0090760:intron 30.0%
GTGAAAGTTTAATGAAGAGA+AGG + chr1_2:72854411-72854430 Msa0090760:intron 30.0%
ATGTACTAAATATCGTCTTG+TGG - chr1_2:72854728-72854747 None:intergenic 30.0%
GTGTTGCATTAATTATGAGT+TGG + chr1_2:72854880-72854899 Msa0090760:intron 30.0%
TGATAGTCATTCAATAGATG+TGG + chr1_2:72854936-72854955 Msa0090760:intron 30.0%
CATACATAAATTGTTGTCTC+AGG + chr1_2:72855023-72855042 Msa0090760:intron 30.0%
ATTAATCCGTCCATTAATTC+CGG - chr1_2:72855071-72855090 None:intergenic 30.0%
CGGATTAATAAAAGCAACAA+AGG + chr1_2:72855082-72855101 Msa0090760:CDS 30.0%
CTCCTTACTACATAATCTAT+TGG + chr1_2:72855389-72855408 Msa0090760:intron 30.0%
GACCAATAGATTATGTAGTA+AGG - chr1_2:72855394-72855413 None:intergenic 30.0%
! GTTGTTGTTATGAGTTGTTA+GGG + chr1_2:72855670-72855689 Msa0090760:intron 30.0%
AGGGAAGTTAGTTAGTTATT+TGG + chr1_2:72855689-72855708 Msa0090760:intron 30.0%
GTGCAGAATTGAATAAACAA+AGG - chr1_2:72855880-72855899 None:intergenic 30.0%
TAGACATGAACTCATATGTT+AGG - chr1_2:72855940-72855959 None:intergenic 30.0%
AAGGCAAAATGATTTATGGT+TGG + chr1_2:72855995-72856014 Msa0090760:intron 30.0%
AGTATAAAAGTTACCTTTGG+AGG + chr1_2:72856055-72856074 Msa0090760:intron 30.0%
CAAGTTAGAATCAGTTATAG+AGG + chr1_2:72856100-72856119 Msa0090760:intron 30.0%
! AGGCTAAATCAATTTTTGTC+AGG + chr1_2:72856120-72856139 Msa0090760:intron 30.0%
!! AGGAGATAAAGGTATTTATG+CGG - chr1_2:72856251-72856270 None:intergenic 30.0%
CTTTATCTCCTGTCATATTA+GGG + chr1_2:72856260-72856279 Msa0090760:intron 30.0%
TTTATCTCCTGTCATATTAG+GGG + chr1_2:72856261-72856280 Msa0090760:intron 30.0%
GTTACTTGACTATCATCATA+AGG - chr1_2:72856392-72856411 None:intergenic 30.0%
ATGATGATAGTCAAGTAACA+AGG + chr1_2:72856393-72856412 Msa0090760:CDS 30.0%
TTCTGAACAAGACTAATTAC+TGG + chr1_2:72856553-72856572 Msa0090760:intron 30.0%
! CAATATTCTCTGAAAGACTA+CGG - chr1_2:72857135-72857154 None:intergenic 30.0%
TATCCCAATTAAACAATGCA+TGG - chr1_2:72857183-72857202 None:intergenic 30.0%
!!! CCTAGCACAAATATTTTTAG+AGG - chr1_2:72857296-72857315 None:intergenic 30.0%
TGAGCCAACAAGTAGTATTA+CGG + chr1_2:72853841-72853860 Msa0090760:CDS 35.0%
ATTTAGCAGTGGAAGAAGTA+GGG - chr1_2:72853917-72853936 None:intergenic 35.0%
AATTTAGCAGTGGAAGAAGT+AGG - chr1_2:72853918-72853937 None:intergenic 35.0%
TAGTGCAGAAAATTTAGCAG+TGG - chr1_2:72853928-72853947 None:intergenic 35.0%
ATCTTCTTCTTCTTCTTCCT+CGG - chr1_2:72854072-72854091 None:intergenic 35.0%
! AAGCAAAACGTGCTGTTAAA+TGG + chr1_2:72854126-72854145 Msa0090760:CDS 35.0%
! AGCAAAACGTGCTGTTAAAT+GGG + chr1_2:72854127-72854146 Msa0090760:CDS 35.0%
!! TTAAGGATGCGTTTGATTTG+GGG - chr1_2:72854179-72854198 None:intergenic 35.0%
! CTTAAGGATGCGTTTGATTT+GGG - chr1_2:72854180-72854199 None:intergenic 35.0%
ACTTAAGGATGCGTTTGATT+TGG - chr1_2:72854181-72854200 None:intergenic 35.0%
!! TGTCTTTGAAGCTCTTATGT+TGG + chr1_2:72854307-72854326 Msa0090760:CDS 35.0%
! TGAAGCTCTTATGTTGGTTA+AGG + chr1_2:72854313-72854332 Msa0090760:CDS 35.0%
CATTTAAATCAGTAAAGCGG+AGG + chr1_2:72854572-72854591 Msa0090760:intron 35.0%
TAATGCAACATGCATACATG+AGG + chr1_2:72854611-72854630 Msa0090760:intron 35.0%
AAATCAGTGTTGTCAAACAG+CGG + chr1_2:72854660-72854679 Msa0090760:intron 35.0%
TTGTCTCAGGAAAGTTGTTA+CGG + chr1_2:72855036-72855055 Msa0090760:intron 35.0%
AACAAAGGATTCTGACCATA+AGG + chr1_2:72855097-72855116 Msa0090760:CDS 35.0%
AAAATAGGGACCAAAAGTGA+TGG + chr1_2:72855497-72855516 Msa0090760:intron 35.0%
TTATAGGGACTAAAAGTCGA+AGG + chr1_2:72855529-72855548 Msa0090760:intron 35.0%
! GGTTGTTGTTATGAGTTGTT+AGG + chr1_2:72855669-72855688 Msa0090760:intron 35.0%
! TTTGTAGTTTTTGCCTCCAA+AGG - chr1_2:72856071-72856090 None:intergenic 35.0%
!! GGAGATAAAGGTATTTATGC+GGG - chr1_2:72856250-72856269 None:intergenic 35.0%
CCTAATATGACAGGAGATAA+AGG - chr1_2:72856262-72856281 None:intergenic 35.0%
CCTTTATCTCCTGTCATATT+AGG + chr1_2:72856259-72856278 Msa0090760:intron 35.0%
TTATCTCCTGTCATATTAGG+GGG + chr1_2:72856262-72856281 Msa0090760:intron 35.0%
ATGATAGTCAAGTAACAAGG+TGG + chr1_2:72856396-72856415 Msa0090760:CDS 35.0%
! GTTTGATGGTTTGATCAACA+AGG + chr1_2:72856418-72856437 Msa0090760:CDS 35.0%
GCATAGTGCAAAATATTACC+TGG - chr1_2:72856496-72856515 None:intergenic 35.0%
GTGAAACTCACTAAAAACGT+AGG - chr1_2:72856664-72856683 None:intergenic 35.0%
AGGCTTATTCTCCATTTGAT+AGG - chr1_2:72856774-72856793 None:intergenic 35.0%
GTGAATCTCACTAAAAACGT+AGG - chr1_2:72856794-72856813 None:intergenic 35.0%
!! TATTACGGCCTCTAAGACAT+TGG + chr1_2:72853856-72853875 Msa0090760:CDS 40.0%
! GATTGTTCTGGTGATGATGT+TGG - chr1_2:72853972-72853991 None:intergenic 40.0%
! CGTATCTTTGTGGATTGTTC+TGG - chr1_2:72853984-72854003 None:intergenic 40.0%
AGAGAAACGACGTATCTTTG+TGG - chr1_2:72853994-72854013 None:intergenic 40.0%
TTCTCTTTATCTGCATCTCG+CGG + chr1_2:72854008-72854027 Msa0090760:CDS 40.0%
TCTTCTTCTTCTTCTTCCTC+GGG - chr1_2:72854071-72854090 None:intergenic 40.0%
! CAATTGGTTGCGGCTTTTAA+TGG - chr1_2:72854099-72854118 None:intergenic 40.0%
! GTTTTGCTTCACGCTTCAAT+TGG - chr1_2:72854115-72854134 None:intergenic 40.0%
! GCAAAACGTGCTGTTAAATG+GGG + chr1_2:72854128-72854147 Msa0090760:CDS 40.0%
!!! TGTTGTTTTGCCACAGAGAA+TGG + chr1_2:72854438-72854457 Msa0090760:intron 40.0%
!! GTTGTTTTGCCACAGAGAAT+GGG + chr1_2:72854439-72854458 Msa0090760:intron 40.0%
!! TTGTTTTGCCACAGAGAATG+GGG + chr1_2:72854440-72854459 Msa0090760:intron 40.0%
CGGCGTCAGTTCAATTATAT+AGG + chr1_2:72854484-72854503 Msa0090760:CDS 40.0%
AGGAAAGTTGTTACGGAATG+TGG + chr1_2:72855043-72855062 Msa0090760:intron 40.0%
GAATGTGGAACCGGAATTAA+TGG + chr1_2:72855058-72855077 Msa0090760:CDS 40.0%
TTAAAGCTTGCAGCTCCTTA+TGG - chr1_2:72855115-72855134 None:intergenic 40.0%
AAGTTCTCATCATCATCCTC+AGG - chr1_2:72855158-72855177 None:intergenic 40.0%
GATAGAAACTGAAGACGAGA+AGG + chr1_2:72855178-72855197 Msa0090760:CDS 40.0%
GGATGATGAGGTATGATGTT+AGG + chr1_2:72855199-72855218 Msa0090760:intron 40.0%
TAGAGTACACTCTGTTGTGA+AGG + chr1_2:72855786-72855805 Msa0090760:intron 40.0%
AGAGTACACTCTGTTGTGAA+GGG + chr1_2:72855787-72855806 Msa0090760:intron 40.0%
GGGAAAGGATAAAAGAGAAC+AGG - chr1_2:72855837-72855856 None:intergenic 40.0%
ATTACACCCCCTAATATGAC+AGG - chr1_2:72856271-72856290 None:intergenic 40.0%
CAAGTAACAAGGTGGTTTGA+TGG + chr1_2:72856404-72856423 Msa0090760:CDS 40.0%
AGGCTTACTCTCTACTTTGT+AGG - chr1_2:72856644-72856663 None:intergenic 40.0%
AAGTCGAGAAAGCAGAGATT+AGG + chr1_2:72857083-72857102 Msa0090760:CDS 40.0%
AGTCGAGAAAGCAGAGATTA+GGG + chr1_2:72857084-72857103 Msa0090760:CDS 40.0%
GAGGCCGTAATACTACTTGT+TGG - chr1_2:72853848-72853867 None:intergenic 45.0%
CTTCACGCTTCAATTGGTTG+CGG - chr1_2:72854109-72854128 None:intergenic 45.0%
! ACGTGCTGTTAAATGGGGAA+TGG + chr1_2:72854133-72854152 Msa0090760:CDS 45.0%
!! TTTGATTTGGGGAGGAGAGA+AGG - chr1_2:72854168-72854187 None:intergenic 45.0%
!!! TTTGTTTTTGGGTTGCAGGG+TGG + chr1_2:72854268-72854287 Msa0090760:intron 45.0%
GTTGTTACGGAATGTGGAAC+CGG + chr1_2:72855049-72855068 Msa0090760:CDS 45.0%
GTGGAACCGGAATTAATGGA+CGG + chr1_2:72855062-72855081 Msa0090760:CDS 45.0%
! AAGGAGCTGCAAGCTTTAAC+TGG + chr1_2:72855116-72855135 Msa0090760:CDS 45.0%
! CTGCAAGCTTTAACTGGCTT+GGG + chr1_2:72855122-72855141 Msa0090760:CDS 45.0%
!! TGCAAGCTTTAACTGGCTTG+GGG + chr1_2:72855123-72855142 Msa0090760:CDS 45.0%
TCATCATCCTCAGGATCATC+AGG - chr1_2:72855149-72855168 None:intergenic 45.0%
TGAAGACGAGAAGGATGATG+AGG + chr1_2:72855187-72855206 Msa0090760:CDS 45.0%
GAGTAGATCACTAGAGACAG+AGG - chr1_2:72855370-72855389 None:intergenic 45.0%
GAGTACACTCTGTTGTGAAG+GGG + chr1_2:72855788-72855807 Msa0090760:intron 45.0%
AGGAGAGAAACTCTCCTCAA+GGG - chr1_2:72855817-72855836 None:intergenic 45.0%
! CTTGTTCAGAAAGCACAAGC+AGG - chr1_2:72856544-72856563 None:intergenic 45.0%
TTTGCAGGAGTTGAGAAAGC+TGG + chr1_2:72857003-72857022 Msa0090760:intron 45.0%
GCACTTTGCTCAAGAAACGA+AGG + chr1_2:72857036-72857055 Msa0090760:CDS 45.0%
TGCTCAAGAAACGAAGGCTA+CGG + chr1_2:72857042-72857061 Msa0090760:CDS 45.0%
AGCAGAGATTAGGGCTAAGA+AGG + chr1_2:72857093-72857112 Msa0090760:CDS 45.0%
ACTACGGAGAAAACGAGTGA+GGG - chr1_2:72857119-72857138 None:intergenic 45.0%
!!! TTTTATTATAAACTATATTT+TGG + chr1_2:72855295-72855314 Msa0090760:intron 5.0%
AGCCATGGCCAATGTCTTAG+AGG - chr1_2:72853867-72853886 None:intergenic 50.0%
TAGCAGTGGAAGAAGTAGGG+TGG - chr1_2:72853914-72853933 None:intergenic 50.0%
TTCTTCTTCTTCCTCGGGAG+CGG - chr1_2:72854066-72854085 None:intergenic 50.0%
!! AGGATGCGTTTGATTTGGGG+AGG - chr1_2:72854176-72854195 None:intergenic 50.0%
! GCTGCAAGCTTTAACTGGCT+TGG + chr1_2:72855121-72855140 Msa0090760:CDS 50.0%
CCACTTAGTGGGAAAAGGCT+TGG - chr1_2:72855240-72855259 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG + chr1_2:72855237-72855256 Msa0090760:intron 50.0%
GGACACCACTTAGTGGGAAA+AGG - chr1_2:72855245-72855264 None:intergenic 50.0%
!! TGTAGCGGACACCACTTAGT+GGG - chr1_2:72855251-72855270 None:intergenic 50.0%
!! ATGTAGCGGACACCACTTAG+TGG - chr1_2:72855252-72855271 None:intergenic 50.0%
ACTAAGTGGTGTCCGCTACA+TGG + chr1_2:72855251-72855270 Msa0090760:intron 50.0%
TTGTGAAGGGGAAACCCTTG+AGG + chr1_2:72855800-72855819 Msa0090760:intron 50.0%
CAGGAGAGAAACTCTCCTCA+AGG - chr1_2:72855818-72855837 None:intergenic 50.0%
CGGGCTCATGTCTAGTCAAT+AGG - chr1_2:72856231-72856250 None:intergenic 50.0%
! CTGAGCAGCGAACTTGTTTG+TGG - chr1_2:72856944-72856963 None:intergenic 50.0%
GAAGGCTACGGATGAAGAAG+AGG + chr1_2:72857054-72857073 Msa0090760:CDS 50.0%
GACTACGGAGAAAACGAGTG+AGG - chr1_2:72857120-72857139 None:intergenic 50.0%
!! GGCCTCTAAGACATTGGCCA+TGG + chr1_2:72853862-72853881 Msa0090760:CDS 55.0%
! TGGTGAAAGCGCAACAGCCA+TGG - chr1_2:72853882-72853901 None:intergenic 55.0%
!! AAGAAGTAGGGTGGTGGTGG+TGG - chr1_2:72853905-72853924 None:intergenic 55.0%
! TGGAAGAAGTAGGGTGGTGG+TGG - chr1_2:72853908-72853927 None:intergenic 55.0%
CAGTGGAAGAAGTAGGGTGG+TGG - chr1_2:72853911-72853930 None:intergenic 55.0%
GGGTTGCAGGGTGGTTTCTT+TGG + chr1_2:72854277-72854296 Msa0090760:intron 55.0%
TTTGCCACAGAGAATGGGGC+CGG + chr1_2:72854444-72854463 Msa0090760:intron 55.0%
!! AGGTGTCGAGTATGATCGCC+AGG + chr1_2:72856475-72856494 Msa0090760:CDS 55.0%
!! AAGTAGGGTGGTGGTGGTGG+TGG - chr1_2:72853902-72853921 None:intergenic 60.0%
TTCATTACCCACCGCTCCCG+AGG + chr1_2:72854052-72854071 Msa0090760:CDS 60.0%
TCTTCTTCCTCGGGAGCGGT+GGG - chr1_2:72854062-72854081 None:intergenic 60.0%
TTCTTCTTCCTCGGGAGCGG+TGG - chr1_2:72854063-72854082 None:intergenic 60.0%
ACATCCGGCCCCATTCTCTG+TGG - chr1_2:72854451-72854470 None:intergenic 60.0%
ATGGGGCCGGATGTTCGTGA+AGG + chr1_2:72854457-72854476 Msa0090760:CDS 60.0%
TGGGGCCGGATGTTCGTGAA+GGG + chr1_2:72854458-72854477 Msa0090760:CDS 60.0%
CGCCTCCCTTCACGAACATC+CGG - chr1_2:72854466-72854485 None:intergenic 60.0%
CGGATGTTCGTGAAGGGAGG+CGG + chr1_2:72854464-72854483 Msa0090760:CDS 60.0%
CTTGGGGCCTGATGATCCTG+AGG + chr1_2:72855139-72855158 Msa0090760:CDS 60.0%
GGCCGGATGTTCGTGAAGGG+AGG + chr1_2:72854461-72854480 Msa0090760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72853810 72857315 72853810 ID=Msa0090760;Name=Msa0090760
chr1_2 mRNA 72853810 72857315 72853810 ID=Msa0090760-mRNA-1;Parent=Msa0090760;Name=Msa0090760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|6|147|299
chr1_2 exon 72853810 72854198 72853810 ID=Msa0090760-mRNA-1:exon:25310;Parent=Msa0090760-mRNA-1
chr1_2 exon 72854286 72854334 72854286 ID=Msa0090760-mRNA-1:exon:25311;Parent=Msa0090760-mRNA-1
chr1_2 exon 72854454 72854505 72854454 ID=Msa0090760-mRNA-1:exon:25312;Parent=Msa0090760-mRNA-1
chr1_2 exon 72855045 72855208 72855045 ID=Msa0090760-mRNA-1:exon:25313;Parent=Msa0090760-mRNA-1
chr1_2 exon 72856380 72856496 72856380 ID=Msa0090760-mRNA-1:exon:25314;Parent=Msa0090760-mRNA-1
chr1_2 exon 72857010 72857315 72857010 ID=Msa0090760-mRNA-1:exon:25315;Parent=Msa0090760-mRNA-1
chr1_2 five_prime_UTR 72853810 72853839 72853810 ID=Msa0090760-mRNA-1:five_prime_utr;Parent=Msa0090760-mRNA-1
chr1_2 CDS 72853840 72854198 72853840 ID=Msa0090760-mRNA-1:cds;Parent=Msa0090760-mRNA-1
chr1_2 CDS 72854286 72854334 72854286 ID=Msa0090760-mRNA-1:cds;Parent=Msa0090760-mRNA-1
chr1_2 CDS 72854454 72854505 72854454 ID=Msa0090760-mRNA-1:cds;Parent=Msa0090760-mRNA-1
chr1_2 CDS 72855045 72855208 72855045 ID=Msa0090760-mRNA-1:cds;Parent=Msa0090760-mRNA-1
chr1_2 CDS 72856380 72856496 72856380 ID=Msa0090760-mRNA-1:cds;Parent=Msa0090760-mRNA-1
chr1_2 CDS 72857010 72857168 72857010 ID=Msa0090760-mRNA-1:cds;Parent=Msa0090760-mRNA-1
chr1_2 three_prime_UTR 72857169 72857315 72857169 ID=Msa0090760-mRNA-1:three_prime_utr;Parent=Msa0090760-mRNA-1
Gene Sequence

>Msa0090760

ATGAGCCAACAAGTAGTATTACGGCCTCTAAGACATTGGCCATGGCTGTTGCGCTTTCACCACCACCACCACCACCCTACTTCTTCCACTGCTAAATTTTCTGCACTATATCATCATCTTCTTCTTCTTCCAACATCATCACCAGAACAATCCACAAAGATACGTCGTTTCTCTTTATCTGCATCTCGCGGAAAACTTCGAAGAGCTGATTCTTCATTACCCACCGCTCCCGAGGAAGAAGAAGAAGAAGATGCTGCCATTAAAAGCCGCAACCAATTGAAGCGTGAAGCAAAACGTGCTGTTAAATGGGGAATGGATTTGTCTTCCTTCTCTCCTCCCCAAATCAAACGCATCCTTAAGGTGGTTTCTTTGGACCAAATTGTCTTTGAAGCTCTTATGTTGGTTAAGAGAATGGGGCCGGATGTTCGTGAAGGGAGGCGGCGTCAGTTCAATTATATAGGAAAGTTGTTACGGAATGTGGAACCGGAATTAATGGACGGATTAATAAAAGCAACAAAGGATTCTGACCATAAGGAGCTGCAAGCTTTAACTGGCTTGGGGCCTGATGATCCTGAGGATGATGATGAGAACTTGATAGAAACTGAAGACGAGAAGGATGATGAGGAATCTAAGCCTTATGATGATAGTCAAGTAACAAGGTGGTTTGATGGTTTGATCAACAAGGACATTCAAATCACCAATGAAGTTTATTCAGTTCAAGGTGTCGAGTATGATCGCCAGGAGTTGAGAAAGCTGGTACGTAAAGTGCACTTTGCTCAAGAAACGAAGGCTACGGATGAAGAAGAGGAGAAAAAAGTCGAGAAAGCAGAGATTAGGGCTAAGAAGGCCCTCACTCGTTTTCTCCGTAGTCTTTCAGAGAATATTGTCAATGAACATTAG

Protein sequence

>Msa0090760

MSQQVVLRPLRHWPWLLRFHHHHHHPTSSTAKFSALYHHLLLLPTSSPEQSTKIRRFSLSASRGKLRRADSSLPTAPEEEEEEDAAIKSRNQLKREAKRAVKWGMDLSSFSPPQIKRILKVVSLDQIVFEALMLVKRMGPDVREGRRRQFNYIGKLLRNVEPELMDGLIKATKDSDHKELQALTGLGPDDPEDDDENLIETEDEKDDEESKPYDDSQVTRWFDGLINKDIQITNEVYSVQGVEYDRQELRKLVRKVHFAQETKATDEEEEKKVEKAEIRAKKALTRFLRSLSENIVNEH*