AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22475


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22475.t1 MTR_7g100540 97.409 193 5 0 17 209 59 251 3.22e-138 387
MS.gene22475.t1 MTR_4g097500 30.500 200 131 6 14 208 50 246 2.87e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22475.t1 AT2G37240 80.108 186 37 0 24 209 63 248 8.68e-111 317
MS.gene22475.t1 AT5G65840 34.759 187 116 4 26 208 86 270 6.11e-25 99.0

Find 61 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGATATCTTCAATTTC+TGG 0.106966 7.4:+9732016 None:intergenic
GCTGAGCAAACAAAATTTAA+AGG 0.173089 7.4:-9732913 MS.gene22475:CDS
GAGGCCTTACAATTTGTTTC+TGG 0.198475 7.4:-9732765 MS.gene22475:CDS
TCTTTCCACAAGTCAGAAAT+TGG 0.241459 7.4:+9733774 None:intergenic
AGCAGAAAACATTACCTTCT+TGG 0.265603 7.4:+9733434 None:intergenic
GCTCTACCAACAGGATATAA+TGG 0.342546 7.4:-9733074 MS.gene22475:intron
TACCTCAAGTTCACTGGAAT+TGG 0.348966 7.4:-9733829 MS.gene22475:CDS
TTTCTGACTTGTGGAAAGAT+AGG 0.355719 7.4:-9733770 MS.gene22475:CDS
TTAAGATATCTTCAATTTCT+GGG 0.369252 7.4:+9732017 None:intergenic
GTGTTTGATTTGGAAGGAAA+TGG 0.371027 7.4:-9733801 MS.gene22475:CDS
TGTTTGCTCAGCAAAGGCTT+TGG 0.376817 7.4:+9732924 None:intergenic
CCCTTTGCTTCTCCTTCTGC+AGG 0.378932 7.4:-9734367 MS.gene22475:CDS
TTGCATTTGCTCGTCACTTT+GGG 0.383103 7.4:-9733737 MS.gene22475:intron
TAAGATAATAGAATTGTATA+TGG 0.387939 7.4:-9732572 MS.gene22475:CDS
AGGAGTTGAGTCTCCAGTGC+TGG 0.394517 7.4:-9733859 MS.gene22475:CDS
GGGTATAGTGGTGGTGGTGG+TGG 0.394684 7.4:+9734387 None:intergenic
ATTGGTGAAAGTGTTTGATT+TGG 0.396812 7.4:-9733811 MS.gene22475:CDS
CATACACACCTTGTGAATAT+AGG 0.399241 7.4:+9732164 None:intergenic
CAAGGAGGAATTATAGTTGC+AGG 0.415807 7.4:-9732207 MS.gene22475:CDS
TGTTTGATTTGGAAGGAAAT+GGG 0.420452 7.4:-9733800 MS.gene22475:CDS
GCCTCATATGACGATTGAAC+GGG 0.426222 7.4:+9732783 None:intergenic
GGTGTAGCACTTGTATTGAT+TGG 0.434510 7.4:-9733043 MS.gene22475:CDS
GGATTCCAATTTCTGACTTG+TGG 0.450614 7.4:-9733779 MS.gene22475:CDS
TTGGAAGCTTTCATTCGAAA+AGG 0.452486 7.4:-9732533 MS.gene22475:CDS
TGGAAGGTTATCGACAAGAT+TGG 0.474176 7.4:-9732552 MS.gene22475:CDS
AACTCCAGAAACAAATTGTA+AGG 0.478715 7.4:+9732761 None:intergenic
AGGAGAAGCAAAGGGTATAG+TGG 0.493170 7.4:+9734375 None:intergenic
GTTGCATTTGCTCGTCACTT+TGG 0.495048 7.4:-9733738 MS.gene22475:CDS
AGCAAAGGGTATAGTGGTGG+TGG 0.503365 7.4:+9734381 None:intergenic
CCCCGTTCAATCGTCATATG+AGG 0.503849 7.4:-9732784 MS.gene22475:CDS
CACCAATTCCAGTGAACTTG+AGG 0.509684 7.4:+9733827 None:intergenic
GGAATTATAGTTGCAGGTCC+TGG 0.514996 7.4:-9732201 MS.gene22475:CDS
AAAGGGTATAGTGGTGGTGG+TGG 0.516970 7.4:+9734384 None:intergenic
TGAGGATACCTCAAGTTCAC+TGG 0.525231 7.4:-9733835 MS.gene22475:CDS
GGCTGTTTCTCTTACTTTGG+GGG 0.526708 7.4:+9732725 None:intergenic
GTGAAAGTGTTTGATTTGGA+AGG 0.528775 7.4:-9733807 MS.gene22475:CDS
TGGACCTGGCAACATTGATC+AGG 0.530445 7.4:-9733023 MS.gene22475:intron
ATAGTTGCAGGTCCTGGTAA+AGG 0.534747 7.4:-9732195 MS.gene22475:CDS
CAGGATATAATGGATGCGTC+TGG 0.535386 7.4:-9733064 MS.gene22475:CDS
GAGGTATCCTCACCCAGCAC+TGG 0.539297 7.4:+9733846 None:intergenic
GCCTGCAGAAGGAGAAGCAA+AGG 0.542339 7.4:+9734366 None:intergenic
CATGAGTAGGACAAAGAAGC+AGG 0.545391 7.4:-9732046 MS.gene22475:intron
GGAGTTGAGTCTCCAGTGCT+GGG 0.551780 7.4:-9733858 MS.gene22475:CDS
TGTACCTGATCAATGTTGCC+AGG 0.557725 7.4:+9733019 None:intergenic
ATAATAGAATTGTATATGGA+AGG 0.563362 7.4:-9732568 MS.gene22475:CDS
AGACAAAACTTGCCTGCAGA+AGG 0.565291 7.4:+9734355 None:intergenic
TGAGTCTCCAGTGCTGGGTG+AGG 0.575533 7.4:-9733853 MS.gene22475:CDS
AAGGATACTGTTAGCAGAGG+AGG 0.583125 7.4:-9732514 MS.gene22475:CDS
CCTGCAGAAGGAGAAGCAAA+GGG 0.584870 7.4:+9734367 None:intergenic
TAGGAGATGTTACCTTTACC+AGG 0.585319 7.4:+9732183 None:intergenic
TGATTATCTTGCATCCAAGA+AGG 0.588890 7.4:-9733448 MS.gene22475:intron
GGCCTCATATGACGATTGAA+CGG 0.593309 7.4:+9732782 None:intergenic
AGAAGCAAAGGGTATAGTGG+TGG 0.594832 7.4:+9734378 None:intergenic
TGACACTGTGGCAGGCAACA+AGG 0.606308 7.4:-9732225 MS.gene22475:intron
ATACTGTTAGCAGAGGAGGC+TGG 0.626834 7.4:-9732510 MS.gene22475:intron
GCACTTGTATTGATTGGACC+TGG 0.646245 7.4:-9733037 MS.gene22475:CDS
GAGCAAACAAAATTTAAAGG+AGG 0.650865 7.4:-9732910 MS.gene22475:intron
GAAAAGGATACTGTTAGCAG+AGG 0.658204 7.4:-9732517 MS.gene22475:CDS
CCTCATATGACGATTGAACG+GGG 0.682252 7.4:+9732784 None:intergenic
TAACATCTCCTATATTCACA+AGG 0.715027 7.4:-9732172 MS.gene22475:intron
CACTGTGGCAGGCAACAAGG+AGG 0.721602 7.4:-9732222 MS.gene22475:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTTATGAATAAAAAATT+AGG + chr7.4:9733692-9733711 None:intergenic 10.0%
!!! GTATTTTCTTAAATTATAAT+CGG + chr7.4:9732258-9732277 None:intergenic 10.0%
!! AAAACAAATATTAAACGAAA+AGG + chr7.4:9733251-9733270 None:intergenic 15.0%
!! AAACAAATATTAAACGAAAA+GGG + chr7.4:9733250-9733269 None:intergenic 15.0%
!! ATCAATAATATTAGTTAGAT+GGG - chr7.4:9732338-9732357 MS.gene22475:intron 15.0%
!! ATTCTATAAAATTGAGTATA+GGG + chr7.4:9734260-9734279 None:intergenic 15.0%
!! TAAGATAATAGAATTGTATA+TGG - chr7.4:9733821-9733840 MS.gene22475:CDS 15.0%
!! TACATTTAATCTATAATTAG+AGG - chr7.4:9734036-9734055 MS.gene22475:intron 15.0%
!! TATCAATAATATTAGTTAGA+TGG - chr7.4:9732337-9732356 MS.gene22475:intron 15.0%
!! TATTCTATAAAATTGAGTAT+AGG + chr7.4:9734261-9734280 None:intergenic 15.0%
!!! AGTTTTTGTTAAATATACAA+AGG - chr7.4:9733758-9733777 MS.gene22475:CDS 15.0%
!!! CAATTTTATAGAATATATCT+TGG - chr7.4:9734266-9734285 MS.gene22475:intron 15.0%
!! AATACAAGTGATTAAATATG+TGG - chr7.4:9732273-9732292 MS.gene22475:intron 20.0%
!! AATATATCTTGGAATATTCA+TGG - chr7.4:9734277-9734296 MS.gene22475:intron 20.0%
!! AGTAATAAATAAAATCCATG+CGG - chr7.4:9733707-9733726 MS.gene22475:intron 20.0%
!! ATAATAGAATTGTATATGGA+AGG - chr7.4:9733825-9733844 MS.gene22475:CDS 20.0%
!! CTAATACCTATATTTAATAC+AGG - chr7.4:9733446-9733465 MS.gene22475:intron 20.0%
!! TGTCAAGTTCATAATATTAA+AGG + chr7.4:9734153-9734172 None:intergenic 20.0%
!! TTAAGATATCTTCAATTTCT+GGG + chr7.4:9734379-9734398 None:intergenic 20.0%
!! TTCATTATTATACAGAAATG+AGG + chr7.4:9732446-9732465 None:intergenic 20.0%
!!! AAAGAAAAAGAAAGTATGAT+AGG + chr7.4:9732398-9732417 None:intergenic 20.0%
!!! CTAGAATCAAATGATTTTTT+TGG + chr7.4:9733050-9733069 None:intergenic 20.0%
!!! TTTAAGATATCTTCAATTTC+TGG + chr7.4:9734380-9734399 None:intergenic 20.0%
! AAAACAGCAATCTTAATATG+AGG + chr7.4:9733083-9733102 None:intergenic 25.0%
! GTTTAGATTAACAGTGAATA+GGG - chr7.4:9732735-9732754 MS.gene22475:intron 25.0%
! TGCATTTCTATTCAAAATGT+TGG - chr7.4:9733200-9733219 MS.gene22475:intron 25.0%
! TGTTTAGATTAACAGTGAAT+AGG - chr7.4:9732734-9732753 MS.gene22475:intron 25.0%
! TTGAAGCTTCAATAAAATCA+TGG - chr7.4:9732801-9732820 MS.gene22475:intron 25.0%
!! ATCTTACACAACTCAATTTT+AGG + chr7.4:9732878-9732897 None:intergenic 25.0%
!! GATGTCTTCTTTATCATTTT+TGG - chr7.4:9733984-9734003 MS.gene22475:intron 25.0%
!! TAGTGAATTTTGTCAAATCA+TGG + chr7.4:9732832-9732851 None:intergenic 25.0%
!!! ATTAAGATTGCTGTTTTTCT+TGG - chr7.4:9733086-9733105 MS.gene22475:intron 25.0%
AACTCCAGAAACAAATTGTA+AGG + chr7.4:9733635-9733654 None:intergenic 30.0%
AGCATAATCAAAACTAGAGA+AGG + chr7.4:9733302-9733321 None:intergenic 30.0%
ATATTATGAACTTGACACTG+TGG - chr7.4:9734156-9734175 MS.gene22475:intron 30.0%
ATTATCCATACCACTCTTAA+AGG - chr7.4:9733952-9733971 MS.gene22475:intron 30.0%
CTTTGGCCTGTATTAAATAT+AGG + chr7.4:9733455-9733474 None:intergenic 30.0%
GAGCAAACAAAATTTAAAGG+AGG - chr7.4:9733483-9733502 MS.gene22475:intron 30.0%
GCTGAGCAAACAAAATTTAA+AGG - chr7.4:9733480-9733499 MS.gene22475:intron 30.0%
GTGCAATAAAAATAGACAAG+TGG + chr7.4:9732089-9732108 None:intergenic 30.0%
TAACATCTCCTATATTCACA+AGG - chr7.4:9734221-9734240 MS.gene22475:intron 30.0%
TCACACATTGAAACAATTGT+TGG + chr7.4:9732506-9732525 None:intergenic 30.0%
TGCAACAGCTAAAATTAACA+CGG + chr7.4:9733787-9733806 None:intergenic 30.0%
TTAACAATTGCATATGTTGC+AGG - chr7.4:9732899-9732918 MS.gene22475:intron 30.0%
TTATGTTAGTGCTTCATAGA+TGG + chr7.4:9732214-9732233 None:intergenic 30.0%
! AGTTTTTGCCAAAATTGTTG+TGG + chr7.4:9732776-9732795 None:intergenic 30.0%
!! AAATTTTGTTTGCTCAGCAA+AGG + chr7.4:9733478-9733497 None:intergenic 30.0%
!! ATTGGTGAAAGTGTTTGATT+TGG - chr7.4:9732582-9732601 MS.gene22475:CDS 30.0%
!! TGTTTGATTTGGAAGGAAAT+GGG - chr7.4:9732593-9732612 MS.gene22475:intron 30.0%
AAAAAACCACGAGTCATGTT+TGG + chr7.4:9733227-9733246 None:intergenic 35.0%
ACATGCACACATCTAAGAAA+AGG + chr7.4:9732717-9732736 None:intergenic 35.0%
AGCAGAAAACATTACCTTCT+TGG + chr7.4:9732962-9732981 None:intergenic 35.0%
CAACAGCTAAAATTAACACG+GGG + chr7.4:9733785-9733804 None:intergenic 35.0%
CATACACACCTTGTGAATAT+AGG + chr7.4:9734232-9734251 None:intergenic 35.0%
CATGCACACATCTAAGAAAA+GGG + chr7.4:9732716-9732735 None:intergenic 35.0%
GATAGTGTAAGACTTCTTGT+AGG + chr7.4:9733922-9733941 None:intergenic 35.0%
GCAACAGCTAAAATTAACAC+GGG + chr7.4:9733786-9733805 None:intergenic 35.0%
TACATTACAGAAACTAGCAC+AGG + chr7.4:9733530-9733549 None:intergenic 35.0%
TATAATCGGTATCTACGTGT+CGG + chr7.4:9732244-9732263 None:intergenic 35.0%
TCTTTCCACAAGTCAGAAAT+TGG + chr7.4:9732622-9732641 None:intergenic 35.0%
TGATAAAGAAGACATCACAG+AGG + chr7.4:9733980-9733999 None:intergenic 35.0%
TGATAGAAGAAAGCTCTCTT+TGG - chr7.4:9734083-9734102 MS.gene22475:intron 35.0%
TGATGCGTTCGATGAAATTT+CGG + chr7.4:9733001-9733020 None:intergenic 35.0%
TGATTATCTTGCATCCAAGA+AGG - chr7.4:9732945-9732964 MS.gene22475:intron 35.0%
TGTAAGTTGTGCAAGATTGT+TGG + chr7.4:9732189-9732208 None:intergenic 35.0%
TTCAATGTGTGAATATGACC+AGG - chr7.4:9732514-9732533 MS.gene22475:CDS 35.0%
TTGGAAGCTTTCATTCGAAA+AGG - chr7.4:9733860-9733879 MS.gene22475:CDS 35.0%
TTTGATTATGCTCTACCAAC+AGG - chr7.4:9733310-9733329 MS.gene22475:intron 35.0%
! CAAGATAATCAGCTCTTTTG+CGG + chr7.4:9732936-9732955 None:intergenic 35.0%
! TTTCTGACTTGTGGAAAGAT+AGG - chr7.4:9732623-9732642 MS.gene22475:intron 35.0%
!! CAATTGTTGGCTCTCAAAAT+AGG + chr7.4:9732493-9732512 None:intergenic 35.0%
!! CGTTGCTTTAAAGTCTTCTT+AGG - chr7.4:9733122-9733141 MS.gene22475:intron 35.0%
!! GTGAAAGTGTTTGATTTGGA+AGG - chr7.4:9732586-9732605 MS.gene22475:intron 35.0%
!! GTGTTTGATTTGGAAGGAAA+TGG - chr7.4:9732592-9732611 MS.gene22475:intron 35.0%
!! TAGGCTGTTTCTCTTACTTT+GGG + chr7.4:9733673-9733692 None:intergenic 35.0%
!! TCTGCATAGATTTCTAGAAC+AGG + chr7.4:9733589-9733608 None:intergenic 35.0%
!! TTAGGCTGTTTCTCTTACTT+TGG + chr7.4:9733674-9733693 None:intergenic 35.0%
!! TTCCAGCATTCTAAGATGTT+AGG + chr7.4:9733418-9733437 None:intergenic 35.0%
!!! AATTTTAGCTGTTGCACTAC+AGG - chr7.4:9733791-9733810 MS.gene22475:CDS 35.0%
AATAGGCAAGTGTTCAACAG+AGG + chr7.4:9732476-9732495 None:intergenic 40.0%
ACGCATCCATTATATCCTGT+TGG + chr7.4:9733328-9733347 None:intergenic 40.0%
ATCAGCACTTTAACAGAACC+TGG - chr7.4:9733560-9733579 MS.gene22475:intron 40.0%
CAAGGAGGAATTATAGTTGC+AGG - chr7.4:9734186-9734205 MS.gene22475:intron 40.0%
CAAGTGGTTGAGAATACAAG+AGG + chr7.4:9732073-9732092 None:intergenic 40.0%
CAGTGAATAGGGAAGAATCA+CGG - chr7.4:9732746-9732765 MS.gene22475:CDS 40.0%
CTCCTAACATCTTAGAATGC+TGG - chr7.4:9733413-9733432 MS.gene22475:intron 40.0%
CTTTCTTCTATCAGCAAGCA+AGG + chr7.4:9734076-9734095 None:intergenic 40.0%
GAAAAGGATACTGTTAGCAG+AGG - chr7.4:9733876-9733895 MS.gene22475:intron 40.0%
GCTCTACCAACAGGATATAA+TGG - chr7.4:9733319-9733338 MS.gene22475:intron 40.0%
TACCTCAAGTTCACTGGAAT+TGG - chr7.4:9732564-9732583 MS.gene22475:CDS 40.0%
TAGGAGATGTTACCTTTACC+AGG + chr7.4:9734213-9734232 None:intergenic 40.0%
TGGAAGGTTATCGACAAGAT+TGG - chr7.4:9733841-9733860 MS.gene22475:CDS 40.0%
TTAGGAGCTAAGTGCATGTT+TGG + chr7.4:9732860-9732879 None:intergenic 40.0%
! AGGATCCTTTAAGAGTGGTA+TGG + chr7.4:9733960-9733979 None:intergenic 40.0%
! GAGGCCTTACAATTTGTTTC+TGG - chr7.4:9733628-9733647 MS.gene22475:intron 40.0%
! GGATTCCAATTTCTGACTTG+TGG - chr7.4:9732614-9732633 MS.gene22475:intron 40.0%
! GGTGTAGCACTTGTATTGAT+TGG - chr7.4:9733350-9733369 MS.gene22475:intron 40.0%
! GTCTTCTTAGGAGACGATTT+TGG - chr7.4:9733134-9733153 MS.gene22475:intron 40.0%
! TCTTACTTTGGGGGTAAATG+TGG + chr7.4:9733662-9733681 None:intergenic 40.0%
! TTGCATTTGCTCGTCACTTT+GGG - chr7.4:9732656-9732675 MS.gene22475:intron 40.0%
!! ACGTCTTCACTCTAAAGTCT+CGG - chr7.4:9732311-9732330 MS.gene22475:intron 40.0%
!! AGGCTGTTTCTCTTACTTTG+GGG + chr7.4:9733672-9733691 None:intergenic 40.0%
!! GATTTCTAGAACAGGTAACC+AGG + chr7.4:9733581-9733600 None:intergenic 40.0%
!!! TTAGGAGACGATTTTGGTTC+TGG - chr7.4:9733140-9733159 MS.gene22475:intron 40.0%
AAGGATACTGTTAGCAGAGG+AGG - chr7.4:9733879-9733898 MS.gene22475:intron 45.0%
AGACAAAACTTGCCTGCAGA+AGG + chr7.4:9732041-9732060 None:intergenic 45.0%
ATAGTTGCAGGTCCTGGTAA+AGG - chr7.4:9734198-9734217 MS.gene22475:intron 45.0%
CACCAATTCCAGTGAACTTG+AGG + chr7.4:9732569-9732588 None:intergenic 45.0%
CATGAGTAGGACAAAGAAGC+AGG - chr7.4:9734347-9734366 MS.gene22475:intron 45.0%
CCTCATATGACGATTGAACG+GGG + chr7.4:9733612-9733631 None:intergenic 45.0%
GCAACATTGATCAGGTACAC+GGG - chr7.4:9733378-9733397 MS.gene22475:intron 45.0%
GCCTCATATGACGATTGAAC+GGG + chr7.4:9733613-9733632 None:intergenic 45.0%
GGAATTATAGTTGCAGGTCC+TGG - chr7.4:9734192-9734211 MS.gene22475:intron 45.0%
GGCAACATTGATCAGGTACA+CGG - chr7.4:9733377-9733396 MS.gene22475:intron 45.0%
GGCCTCATATGACGATTGAA+CGG + chr7.4:9733614-9733633 None:intergenic 45.0%
GTTGCATTTGCTCGTCACTT+TGG - chr7.4:9732655-9732674 MS.gene22475:intron 45.0%
TATGAACTTGACACTGTGGC+AGG - chr7.4:9734160-9734179 MS.gene22475:intron 45.0%
TCAAACGTGCTCACATGAGT+AGG - chr7.4:9734334-9734353 MS.gene22475:intron 45.0%
TGAGGATACCTCAAGTTCAC+TGG - chr7.4:9732558-9732577 MS.gene22475:CDS 45.0%
TGTACCTGATCAATGTTGCC+AGG + chr7.4:9733377-9733396 None:intergenic 45.0%
TGTTTGCTCAGCAAAGGCTT+TGG + chr7.4:9733472-9733491 None:intergenic 45.0%
! ACGGTGAGCCACAACAATTT+TGG - chr7.4:9732765-9732784 MS.gene22475:CDS 45.0%
! AGAAGCAAAGGGTATAGTGG+TGG + chr7.4:9732018-9732037 None:intergenic 45.0%
! AGGAGAAGCAAAGGGTATAG+TGG + chr7.4:9732021-9732040 None:intergenic 45.0%
! CACAGAGGATCCTTTAAGAG+TGG + chr7.4:9733965-9733984 None:intergenic 45.0%
!! CAGGATATAATGGATGCGTC+TGG - chr7.4:9733329-9733348 MS.gene22475:intron 45.0%
!! GCACTTGTATTGATTGGACC+TGG - chr7.4:9733356-9733375 MS.gene22475:intron 45.0%
!! GGCTGTTTCTCTTACTTTGG+GGG + chr7.4:9733671-9733690 None:intergenic 45.0%
!!! CGATTTTGGTTCTGGACTTC+TGG - chr7.4:9733148-9733167 MS.gene22475:intron 45.0%
ATACTGTTAGCAGAGGAGGC+TGG - chr7.4:9733883-9733902 MS.gene22475:intron 50.0%
CCCCGTTCAATCGTCATATG+AGG - chr7.4:9733609-9733628 MS.gene22475:intron 50.0%
CCTGCAGAAGGAGAAGCAAA+GGG + chr7.4:9732029-9732048 None:intergenic 50.0%
GTTGGTCCAAACATGACTCG+TGG - chr7.4:9733218-9733237 MS.gene22475:intron 50.0%
TGGACCTGGCAACATTGATC+AGG - chr7.4:9733370-9733389 MS.gene22475:intron 50.0%
TTAGCTGTTGCACTACAGGC+AGG - chr7.4:9733795-9733814 MS.gene22475:CDS 50.0%
! AGCAAAGGGTATAGTGGTGG+TGG + chr7.4:9732015-9732034 None:intergenic 50.0%
!! AAAGGGTATAGTGGTGGTGG+TGG + chr7.4:9732012-9732031 None:intergenic 50.0%
AGGAGTTGAGTCTCCAGTGC+TGG - chr7.4:9732534-9732553 MS.gene22475:CDS 55.0%
CCCTTTGCTTCTCCTTCTGC+AGG - chr7.4:9732026-9732045 MS.gene22475:CDS 55.0%
GCCTGCAGAAGGAGAAGCAA+AGG + chr7.4:9732030-9732049 None:intergenic 55.0%
GGAGTTGAGTCTCCAGTGCT+GGG - chr7.4:9732535-9732554 MS.gene22475:CDS 55.0%
TGACACTGTGGCAGGCAACA+AGG - chr7.4:9734168-9734187 MS.gene22475:intron 55.0%
! AGCACTGGAGACTCAACTCC+TGG + chr7.4:9732535-9732554 None:intergenic 55.0%
CACTGTGGCAGGCAACAAGG+AGG - chr7.4:9734171-9734190 MS.gene22475:intron 60.0%
GCACACATCACTCAGCCGCA+TGG + chr7.4:9733725-9733744 None:intergenic 60.0%
! GAGGTATCCTCACCCAGCAC+TGG + chr7.4:9732550-9732569 None:intergenic 60.0%
! TGAGTCTCCAGTGCTGGGTG+AGG - chr7.4:9732540-9732559 MS.gene22475:CDS 60.0%
!! GGGTATAGTGGTGGTGGTGG+TGG + chr7.4:9732009-9732028 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 9732000 9734415 9732000 ID=MS.gene22475
chr7.4 mRNA 9732000 9734415 9732000 ID=MS.gene22475.t1;Parent=MS.gene22475
chr7.4 exon 9734364 9734415 9734364 ID=MS.gene22475.t1.exon1;Parent=MS.gene22475.t1
chr7.4 CDS 9734364 9734415 9734364 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9733738 9733879 9733738 ID=MS.gene22475.t1.exon2;Parent=MS.gene22475.t1
chr7.4 CDS 9733738 9733879 9733738 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9733449 9733494 9733449 ID=MS.gene22475.t1.exon3;Parent=MS.gene22475.t1
chr7.4 CDS 9733449 9733494 9733449 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9733024 9733083 9733024 ID=MS.gene22475.t1.exon4;Parent=MS.gene22475.t1
chr7.4 CDS 9733024 9733083 9733024 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9732911 9732947 9732911 ID=MS.gene22475.t1.exon5;Parent=MS.gene22475.t1
chr7.4 CDS 9732911 9732947 9732911 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9732740 9732819 9732740 ID=MS.gene22475.t1.exon6;Parent=MS.gene22475.t1
chr7.4 CDS 9732740 9732819 9732740 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9732511 9732602 9732511 ID=MS.gene22475.t1.exon7;Parent=MS.gene22475.t1
chr7.4 CDS 9732511 9732602 9732511 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9732173 9732233 9732173 ID=MS.gene22475.t1.exon8;Parent=MS.gene22475.t1
chr7.4 CDS 9732173 9732233 9732173 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
chr7.4 exon 9732000 9732059 9732000 ID=MS.gene22475.t1.exon9;Parent=MS.gene22475.t1
chr7.4 CDS 9732000 9732059 9732000 ID=cds.MS.gene22475.t1;Parent=MS.gene22475.t1
Gene Sequence

>MS.gene22475

ATGTATCCACCACCACCACCACTATACCCTTTGCTTCTCCTTCTGCAGGCAAGTTTTGTCTCACTCTTTTCCTCTTGTATTCTCAACCACTTGTCTATTTTTATTGCACTAGAATTGTTGATGAATTCATTTTCAAAGTACTATAAATAGAGATGATAAACATGCTACATAATTTTTTTATGTCATCCAACAATCTTGCACAACTTACATACCATCTATGAAGCACTAACATAAACACACACCGACACGTAGATACCGATTATAATTTAAGAAAATACAAGTGATTAAATATGTGGATATACGTATCAGACACGTCTTCACTCTAAAGTCTCGGTGCTATCAATAATATTAGTTAGATGGGAAGTTATCTTGTAAGTTTGTTGCACAAGAATTATCCTATCATACTTTCTTTTTCTTTCTTTACATGTACACTCTCTGCATCTCCTCATTTCTGTATAATAATGAAAATGAAACCTCTGTTGAACACTTGCCTATTTTGAGAGCCAACAATTGTTTCAATGTGTGAATATGACCAGGAGTTGAGTCTCCAGTGCTGGGTGAGGATACCTCAAGTTCACTGGAATTGGTGAAAGTGTTTGATTTGGAAGGAAATGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCAGTTGTTGCATTTGCTCGTCACTTTGGGTGATTTTCTCTTATTAGATTCAAAAATCAAGCTACCCTTTTCTTAGATGTGTGCATGTTTAGATTAACAGTGAATAGGGAAGAATCACGGTGAGCCACAACAATTTTGGCAAAAACTATACTTTGAAGCTTCAATAAAATCATGGTGTCACCATGATTTGACAAAATTCACTATCAATCCAAACATGCACTTAGCTCCTAAAATTGAGTTGTGTAAGATATTAACAATTGCATATGTTGCAGGTGTGTGCTTTGCCGCAAAAGAGCTGATTATCTTGCATCCAAGAAGGTAATGTTTTCTGCTCTTCTTATACTGTCTTCCGAAATTTCATCGAACGCATCACAGTGTCACACATGCTATTTCTTTATCCAAAAAAATCATTTGATTCTAGCTAGCGTCTACCTCATATTAAGATTGCTGTTTTTCTTGGAAAAACATTTGAACGTTGCTTTAAAGTCTTCTTAGGAGACGATTTTGGTTCTGGACTTCTGGTTGTTAGAGATTATAGTATCAACAAGATATGCATTTCTATTCAAAATGTTGGTCCAAACATGACTCGTGGTTTTTTCCCTTTTCGTTTAATATTTGTTTTGCTTTTTTATGCTGTAAGCTGTACTTTACCTTCTCTAGTTTTGATTATGCTCTACCAACAGGATATAATGGATGCGTCTGGTGTAGCACTTGTATTGATTGGACCTGGCAACATTGATCAGGTACACGGGATTTTCTGCATTCTCCTAACATCTTAGAATGCTGGAATTTTGTAGCTAATACCTATATTTAATACAGGCCAAAGCCTTTGCTGAGCAAACAAAATTTAAAGGAGGTACTCTACAGCTGACATAATACCTGTGCTAGTTTCTGTAATGTACTCATCTTATATCAGCACTTTAACAGAACCTGGTTACCTGTTCTAGAAATCTATGCAGACCCCGTTCAATCGTCATATGAGGCCTTACAATTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAAGTAAGAGAAACAGCCTAATTTTTTATTCATAAGTAATAAATAAAATCCATGCGGCTGAGTGATGTGTGCGTTTATAAATTGAAGTTTTTGTTAAATATACAAAGGACCCCGTGTTAATTTTAGCTGTTGCACTACAGGCAGGTCTTAAGATAATAGAATTGTATATGGAAGGTTATCGACAAGATTGGAAGCTTTCATTCGAAAAGGATACTGTTAGCAGAGGAGGCTGGTATGTAAATTTGTCCTACAAGAAGTCTTACACTATCACATTATCTGATTATCCATACCACTCTTAAAGGATCCTCTGTGATGTCTTCTTTATCATTTTTGGTTTGCGAAAAAATCGTAAAGATATGTGTCTACATTTAATCTATAATTAGAGGATAAGAAGTTCATTCCTTGCTTGCTGATAGAAGAAAGCTCTCTTTGGACATTTTTTATTTGTTATGTATGTGAGTTATGATCATAATTTTTCCTTTAATATTATGAACTTGACACTGTGGCAGGCAACAAGGAGGAATTATAGTTGCAGGTCCTGGTAAAGGTAACATCTCCTATATTCACAAGGTGTGTATGTCAAACCCTATACTCAATTTTATAGAATATATCTTGGAATATTCATGGTATACATGTTTAACATTTTTATGTTATCATTATGTCAAACGTGCTCACATGAGTAGGACAAAGAAGCAGGAGATGACCCAGAAATTGAAGATATCTTAAAAGCATGTTGCTCGTGA

Protein sequence

>MS.gene22475.t1

MYPPPPPLYPLLLLLQARVESPVLGEDTSSSLELVKVFDLEGNGIPISDLWKDRKAVVAFARHFGCVLCRKRADYLASKKDIMDASGVALVLIGPGNIDQAKAFAEQTKFKGEIYADPVQSSYEALQFVSGVLTTFTPKAGLKIIELYMEGYRQDWKLSFEKDTVSRGGWQQGGIIVAGPGKGNISYIHKDKEAGDDPEIEDILKACCS