Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31403.t1 | XP_013465197.1 | 99.1 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 1.50E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31403.t1 | Q9MAH8 | 51.2 | 367 | 126 | 12 | 8 | 329 | 33 | 391 | 1.9e-48 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31403.t1 | G7ZVJ2 | 99.1 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 1.0e-153 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31403.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene31403 | 0.847458 | 1.14E-59 | -1.69E-46 |
| MS.gene049171 | MS.gene31403 | 0.832467 | 9.30E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene31403 | 0.838299 | 3.12E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene31403 | 0.858715 | 6.81E-63 | -1.69E-46 |
| MS.gene049232 | MS.gene31403 | 0.802323 | 5.92E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene31403 | 0.821211 | 4.56E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene31403 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene04932 | MS.gene31403 | -0.816344 | 5.80E-52 | -1.69E-46 |
| MS.gene049396 | MS.gene31403 | 0.829262 | 5.68E-55 | -1.69E-46 |
| MS.gene049488 | MS.gene31403 | 0.816222 | 6.18E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene31403 | 0.843647 | 1.23E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene31403 | 0.812866 | 3.42E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene31403 | 0.847367 | 1.21E-59 | -1.69E-46 |
| MS.gene050170 | MS.gene31403 | 0.82358 | 1.28E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene31403 | 0.81817 | 2.25E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene31403 | 0.827882 | 1.22E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene31403 | 0.819666 | 1.03E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene31403 | 0.828065 | 1.11E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene31403 | 0.826367 | 2.82E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene31403 | 0.824903 | 6.27E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene31403 | 0.824961 | 6.08E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene31403 | 0.853903 | 1.76E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene31403 | 0.832094 | 1.15E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene31403 | 0.827932 | 1.19E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene31403 | 0.832946 | 7.07E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene31403 | 0.870452 | 1.44E-66 | -1.69E-46 |
| MS.gene050871 | MS.gene31403 | 0.872636 | 2.73E-67 | -1.69E-46 |
| MS.gene050950 | MS.gene31403 | 0.840677 | 7.53E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene31403 | 0.805039 | 1.62E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene31403 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene31403 | 0.86318 | 2.99E-64 | -1.69E-46 |
| MS.gene051692 | MS.gene31403 | 0.80191 | 7.20E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene31403 | 0.820463 | 6.77E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene31403 | 0.836185 | 1.09E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene31403 | 0.868188 | 7.86E-66 | -1.69E-46 |
| MS.gene051858 | MS.gene31403 | 0.835524 | 1.60E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene31403 | 0.839664 | 1.38E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene31403 | 0.867567 | 1.24E-65 | -1.69E-46 |
| MS.gene052318 | MS.gene31403 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene31403 | 0.816676 | 4.89E-52 | -1.69E-46 |
| MS.gene05234 | MS.gene31403 | -0.804968 | 1.67E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene31403 | 0.835906 | 1.28E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene31403 | 0.825563 | 4.38E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene31403 | 0.809943 | 1.47E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene31403 | 0.801381 | 9.25E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene31403 | 0.803359 | 3.62E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene31403 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene31403 | 0.855464 | 6.20E-62 | -1.69E-46 |
| MS.gene052503 | MS.gene31403 | 0.874064 | 9.04E-68 | -1.69E-46 |
| MS.gene052505 | MS.gene31403 | 0.851402 | 9.09E-61 | -1.69E-46 |
| MS.gene052506 | MS.gene31403 | 0.817851 | 2.66E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene31403 | 0.832727 | 8.01E-56 | -1.69E-46 |
| MS.gene052822 | MS.gene31403 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene31403 | 0.872421 | 3.22E-67 | -1.69E-46 |
| MS.gene052825 | MS.gene31403 | 0.872867 | 2.29E-67 | -1.69E-46 |
| MS.gene052870 | MS.gene31403 | 0.824206 | 9.15E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene31403 | 0.834039 | 3.77E-56 | -1.69E-46 |
| MS.gene052966 | MS.gene31403 | 0.810652 | 1.04E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene31403 | 0.812635 | 3.84E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene31403 | 0.80474 | 1.87E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene31403 | 0.83086 | 2.32E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene31403 | 0.818059 | 2.39E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene31403 | 0.812748 | 3.63E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene31403 | 0.805225 | 1.48E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene31403 | -0.807123 | 5.89E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene31403 | 0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene31403 | 0.82316 | 1.61E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene31403 | 0.823272 | 1.51E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene31403 | 0.849842 | 2.49E-60 | -1.69E-46 |
| MS.gene053574 | MS.gene31403 | 0.848464 | 6.03E-60 | -1.69E-46 |
| MS.gene053626 | MS.gene31403 | 0.835119 | 2.02E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene31403 | 0.85637 | 3.37E-62 | -1.69E-46 |
| MS.gene053824 | MS.gene31403 | 0.873709 | 1.19E-67 | -1.69E-46 |
| MS.gene053912 | MS.gene31403 | 0.820738 | 5.85E-53 | -1.69E-46 |
| MS.gene053916 | MS.gene31403 | 0.833652 | 4.72E-56 | -1.69E-46 |
| MS.gene054003 | MS.gene31403 | 0.877723 | 5.00E-69 | -1.69E-46 |
| MS.gene054408 | MS.gene31403 | 0.825998 | 3.45E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene31403 | 0.828033 | 1.13E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene31403 | 0.819947 | 8.89E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene31403 | 0.815621 | 8.42E-52 | -1.69E-46 |
| MS.gene054706 | MS.gene31403 | -0.832836 | 7.53E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene31403 | 0.842701 | 2.20E-58 | -1.69E-46 |
| MS.gene054884 | MS.gene31403 | -0.808716 | 2.70E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene31403 | 0.827741 | 1.32E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene31403 | 0.839561 | 1.47E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene31403 | 0.800938 | 1.14E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene31403 | 0.84921 | 3.74E-60 | -1.69E-46 |
| MS.gene055206 | MS.gene31403 | 0.82071 | 5.94E-53 | -1.69E-46 |
| MS.gene055224 | MS.gene31403 | 0.817397 | 3.37E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene31403 | 0.826261 | 2.99E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene31403 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene055486 | MS.gene31403 | 0.82861 | 8.17E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene31403 | 0.840107 | 1.06E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene31403 | 0.868921 | 4.56E-66 | -1.69E-46 |
| MS.gene055722 | MS.gene31403 | 0.815216 | 1.04E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene31403 | 0.81488 | 1.23E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene31403 | 0.810047 | 1.40E-50 | -1.69E-46 |
| MS.gene055787 | MS.gene31403 | -0.80728 | 5.46E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene31403 | 0.832607 | 8.58E-56 | -1.69E-46 |
| MS.gene055909 | MS.gene31403 | 0.833147 | 6.30E-56 | -1.69E-46 |
| MS.gene055911 | MS.gene31403 | 0.828827 | 7.24E-55 | -1.69E-46 |
| MS.gene055941 | MS.gene31403 | 0.869929 | 2.14E-66 | -1.69E-46 |
| MS.gene056046 | MS.gene31403 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene31403 | 0.860549 | 1.91E-63 | -1.69E-46 |
| MS.gene056387 | MS.gene31403 | 0.85388 | 1.78E-61 | -1.69E-46 |
| MS.gene056448 | MS.gene31403 | 0.82608 | 3.30E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene31403 | 0.823788 | 1.15E-53 | -1.69E-46 |
| MS.gene056510 | MS.gene31403 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene31403 | 0.835506 | 1.61E-56 | -1.69E-46 |
| MS.gene05664 | MS.gene31403 | 0.808076 | 3.70E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene31403 | 0.809523 | 1.81E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene31403 | 0.832612 | 8.56E-56 | -1.69E-46 |
| MS.gene056946 | MS.gene31403 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene057048 | MS.gene31403 | 0.834266 | 3.31E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene31403 | 0.857855 | 1.23E-62 | -1.69E-46 |
| MS.gene057086 | MS.gene31403 | 0.834473 | 2.94E-56 | -1.69E-46 |
| MS.gene057146 | MS.gene31403 | 0.808208 | 3.47E-50 | -1.69E-46 |
| MS.gene057261 | MS.gene31403 | -0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene31403 | 0.823165 | 1.60E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene31403 | 0.850233 | 1.94E-60 | -1.69E-46 |
| MS.gene057734 | MS.gene31403 | 0.861767 | 8.14E-64 | -1.69E-46 |
| MS.gene057831 | MS.gene31403 | 0.810855 | 9.37E-51 | -1.69E-46 |
| MS.gene057856 | MS.gene31403 | 0.886122 | 4.50E-72 | -1.69E-46 |
| MS.gene057857 | MS.gene31403 | 0.859555 | 3.81E-63 | -1.69E-46 |
| MS.gene05787 | MS.gene31403 | 0.834694 | 2.58E-56 | -1.69E-46 |
| MS.gene057926 | MS.gene31403 | 0.83988 | 1.22E-57 | -1.69E-46 |
| MS.gene058007 | MS.gene31403 | 0.801617 | 8.27E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene31403 | 0.818146 | 2.28E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene31403 | 0.846258 | 2.43E-59 | -1.69E-46 |
| MS.gene058338 | MS.gene31403 | 0.827651 | 1.39E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene31403 | 0.847142 | 1.39E-59 | -1.69E-46 |
| MS.gene05837 | MS.gene31403 | 0.836298 | 1.02E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene31403 | 0.829424 | 5.19E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene31403 | 0.828171 | 1.04E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene31403 | 0.823422 | 1.40E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene31403 | 0.806189 | 9.28E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene31403 | 0.847728 | 9.63E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene31403 | 0.868307 | 7.20E-66 | -1.69E-46 |
| MS.gene05913 | MS.gene31403 | 0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene31403 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene31403 | -0.801036 | 1.09E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene31403 | 0.847932 | 8.45E-60 | -1.69E-46 |
| MS.gene059367 | MS.gene31403 | 0.810806 | 9.60E-51 | -1.69E-46 |
| MS.gene059368 | MS.gene31403 | 0.807824 | 4.18E-50 | -1.69E-46 |
| MS.gene059667 | MS.gene31403 | 0.811247 | 7.70E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene31403 | 0.804682 | 1.92E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene31403 | 0.839482 | 1.54E-57 | -1.69E-46 |
| MS.gene059801 | MS.gene31403 | 0.818352 | 2.05E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene31403 | 0.81041 | 1.17E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene31403 | 0.831259 | 1.85E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene31403 | 0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene31403 | 0.810766 | 9.79E-51 | -1.69E-46 |
| MS.gene060485 | MS.gene31403 | 0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene31403 | 0.847612 | 1.04E-59 | -1.69E-46 |
| MS.gene060778 | MS.gene31403 | 0.820646 | 6.15E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene31403 | 0.81381 | 2.12E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene31403 | 0.817736 | 2.83E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene31403 | 0.817892 | 2.61E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene31403 | 0.837847 | 4.08E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene31403 | 0.845928 | 2.99E-59 | -1.69E-46 |
| MS.gene06097 | MS.gene31403 | 0.817487 | 3.21E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene31403 | 0.826962 | 2.03E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene31403 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene31403 | 0.801875 | 7.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31403.t1 | MTR_2g090960 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 674 |
| MS.gene31403.t1 | MTR_4g079580 | 54.303 | 337 | 113 | 12 | 3 | 314 | 1 | 321 | 1.82e-104 | 309 |
| MS.gene31403.t1 | MTR_8g463380 | 42.327 | 404 | 145 | 13 | 7 | 329 | 37 | 433 | 8.31e-79 | 247 |
| MS.gene31403.t1 | MTR_2g078200 | 38.235 | 340 | 138 | 10 | 7 | 326 | 3 | 290 | 2.00e-50 | 169 |
| MS.gene31403.t1 | MTR_7g015010 | 62.162 | 74 | 28 | 0 | 18 | 91 | 51 | 124 | 2.03e-24 | 102 |
| MS.gene31403.t1 | MTR_6g015350 | 58.824 | 85 | 27 | 2 | 3 | 87 | 33 | 109 | 3.11e-23 | 98.6 |
| MS.gene31403.t1 | MTR_4g109660 | 61.765 | 68 | 26 | 0 | 18 | 85 | 50 | 117 | 2.10e-21 | 92.8 |
| MS.gene31403.t1 | MTR_3g026050 | 58.824 | 68 | 28 | 0 | 18 | 85 | 51 | 118 | 5.90e-20 | 90.1 |
| MS.gene31403.t1 | MTR_6g017055 | 50.746 | 67 | 33 | 0 | 18 | 84 | 120 | 186 | 7.23e-17 | 81.3 |
| MS.gene31403.t1 | MTR_1g103380 | 53.333 | 60 | 28 | 0 | 23 | 82 | 200 | 259 | 2.63e-16 | 79.7 |
| MS.gene31403.t1 | MTR_7g018500 | 54.386 | 57 | 26 | 0 | 26 | 82 | 122 | 178 | 9.95e-15 | 74.7 |
| MS.gene31403.t1 | MTR_4g111935 | 49.206 | 63 | 32 | 0 | 20 | 82 | 128 | 190 | 2.53e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31403.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene31403.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene31403.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene31403.t1 | AT3G15030 | 40.852 | 399 | 145 | 14 | 8 | 326 | 29 | 416 | 2.27e-74 | 235 |
| MS.gene31403.t1 | AT1G53230 | 44.022 | 368 | 151 | 13 | 8 | 329 | 33 | 391 | 2.54e-69 | 221 |
| MS.gene31403.t1 | AT1G53230 | 44.022 | 368 | 151 | 13 | 8 | 329 | 33 | 391 | 2.54e-69 | 221 |
| MS.gene31403.t1 | AT2G31070 | 47.410 | 251 | 82 | 12 | 1 | 228 | 1 | 224 | 1.16e-53 | 180 |
| MS.gene31403.t1 | AT4G18390 | 57.447 | 94 | 33 | 1 | 18 | 111 | 36 | 122 | 3.35e-27 | 110 |
| MS.gene31403.t1 | AT4G18390 | 57.447 | 94 | 33 | 1 | 18 | 111 | 36 | 122 | 3.35e-27 | 110 |
| MS.gene31403.t1 | AT3G02150 | 61.905 | 84 | 27 | 1 | 3 | 86 | 58 | 136 | 2.64e-24 | 100 |
| MS.gene31403.t1 | AT3G02150 | 61.905 | 84 | 27 | 1 | 3 | 86 | 58 | 136 | 4.16e-24 | 101 |
| MS.gene31403.t1 | AT1G30210 | 66.176 | 68 | 23 | 0 | 18 | 85 | 44 | 111 | 7.62e-23 | 97.4 |
| MS.gene31403.t1 | AT1G30210 | 66.176 | 68 | 23 | 0 | 18 | 85 | 44 | 111 | 7.62e-23 | 97.4 |
| MS.gene31403.t1 | AT5G60970 | 60.000 | 70 | 25 | 1 | 18 | 87 | 57 | 123 | 4.69e-21 | 92.8 |
| MS.gene31403.t1 | AT5G08070 | 58.333 | 72 | 28 | 1 | 18 | 87 | 27 | 98 | 7.32e-21 | 90.1 |
| MS.gene31403.t1 | AT5G08070 | 58.333 | 72 | 28 | 1 | 18 | 87 | 27 | 98 | 7.32e-21 | 90.1 |
| MS.gene31403.t1 | AT1G68800 | 40.659 | 91 | 54 | 0 | 20 | 110 | 108 | 198 | 2.13e-18 | 85.5 |
| MS.gene31403.t1 | AT1G68800 | 40.659 | 91 | 54 | 0 | 20 | 110 | 108 | 198 | 2.54e-18 | 85.1 |
| MS.gene31403.t1 | AT1G67260 | 54.545 | 66 | 30 | 0 | 19 | 84 | 82 | 147 | 3.38e-18 | 84.7 |
| MS.gene31403.t1 | AT1G67260 | 54.545 | 66 | 30 | 0 | 19 | 84 | 82 | 147 | 3.38e-18 | 84.7 |
| MS.gene31403.t1 | AT1G67260 | 54.545 | 66 | 30 | 0 | 19 | 84 | 82 | 147 | 4.10e-18 | 84.3 |
| MS.gene31403.t1 | AT3G18550 | 50.794 | 63 | 31 | 0 | 20 | 82 | 144 | 206 | 2.93e-14 | 73.6 |
| MS.gene31403.t1 | AT3G18550 | 50.000 | 64 | 32 | 0 | 19 | 82 | 143 | 206 | 3.02e-14 | 73.6 |
| MS.gene31403.t1 | AT3G18550 | 50.000 | 64 | 32 | 0 | 19 | 82 | 143 | 206 | 3.03e-14 | 73.6 |
| MS.gene31403.t1 | AT3G18550 | 50.000 | 64 | 32 | 0 | 19 | 82 | 143 | 206 | 3.03e-14 | 73.6 |
Find 70 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAATAGAACCGGGTTTA+TGG | 0.199355 | 2.4:+9517927 | MS.gene31403:CDS |
| GTTAATTCGCCTACGTTTCT+AGG | 0.206516 | 2.4:+9517949 | MS.gene31403:CDS |
| TGTAACTCTTCTGTTGCATT+TGG | 0.281307 | 2.4:-9517529 | None:intergenic |
| ATTCCCCAAGCTTCTATCTT+TGG | 0.299538 | 2.4:+9518102 | MS.gene31403:CDS |
| TCTTCTGTTGCATTTGGAAT+TGG | 0.308776 | 2.4:-9517523 | None:intergenic |
| CACCATAACCATAACCATTC+AGG | 0.316779 | 2.4:+9517652 | MS.gene31403:CDS |
| TGTATTCCTGCTAGAATTCA+AGG | 0.342553 | 2.4:+9518159 | MS.gene31403:CDS |
| GATTTGATGCTAATTATAAC+AGG | 0.345674 | 2.4:+9517881 | MS.gene31403:CDS |
| TGTTGATTGGCTCATCAAAA+AGG | 0.366611 | 2.4:+9517456 | MS.gene31403:CDS |
| ATTATAACAGGATTGTGAAT+TGG | 0.376707 | 2.4:+9517893 | MS.gene31403:CDS |
| TTCAAGGAGGCCACATTGTA+AGG | 0.379947 | 2.4:+9517293 | MS.gene31403:CDS |
| GAATGAAACCTGAATGGTTA+TGG | 0.404262 | 2.4:-9517660 | None:intergenic |
| GCAGAACAATCAGAATCTTC+TGG | 0.415389 | 2.4:+9517607 | MS.gene31403:CDS |
| AAGCTTCTATCTTTGGTAGC+AGG | 0.417259 | 2.4:+9518109 | MS.gene31403:CDS |
| TGCAGTAGAAACAAATGAAA+TGG | 0.417940 | 2.4:+9517576 | MS.gene31403:CDS |
| AGAAGAAGAGGATGGCCTTT+CGG | 0.418415 | 2.4:-9518208 | None:intergenic |
| AACAACTCAACACAGGATCT+TGG | 0.421186 | 2.4:+9517784 | MS.gene31403:CDS |
| TAATTAGCATCAAATCCAAC+AGG | 0.428411 | 2.4:-9517874 | None:intergenic |
| GCTACCAAAGATAGAAGCTT+GGG | 0.431520 | 2.4:-9518106 | None:intergenic |
| GGCCACATTGTAAGGGCAAC+AGG | 0.434632 | 2.4:+9517301 | MS.gene31403:CDS |
| GATTCACCAACAGAAGTTGT+TGG | 0.436409 | 2.4:-9517718 | None:intergenic |
| ACAGCTGATATGAATAGAAC+CGG | 0.440232 | 2.4:+9517919 | MS.gene31403:CDS |
| CATTTGAAGCTGAATTGTCT+TGG | 0.440619 | 2.4:-9517825 | None:intergenic |
| TTTCTGTCTGATGCTTTGAC+AGG | 0.443796 | 2.4:+9518132 | MS.gene31403:CDS |
| TCCACCGAGGCATCGGCAAT+TGG | 0.446878 | 2.4:-9518051 | None:intergenic |
| TTTCACCATCACTCCGTCCT+TGG | 0.447022 | 2.4:+9518019 | MS.gene31403:CDS |
| TAGAAAAGACAGACATAGTA+AGG | 0.449768 | 2.4:+9517324 | MS.gene31403:CDS |
| GTGATGAGAATTAGAAGAAG+AGG | 0.465335 | 2.4:-9518220 | None:intergenic |
| AACCTGAATGGTTATGGTTA+TGG | 0.467860 | 2.4:-9517654 | None:intergenic |
| GGAGAAATAGTTCAAGTTCA+AGG | 0.475915 | 2.4:+9517277 | MS.gene31403:CDS |
| GCATTTGGAATTGGATTCCA+TGG | 0.487862 | 2.4:-9517514 | None:intergenic |
| GACCGAGTAAAGCTGTTGAT+TGG | 0.496508 | 2.4:+9517443 | MS.gene31403:CDS |
| TTCTCTGGATCAAACCCTGT+TGG | 0.497035 | 2.4:+9517859 | MS.gene31403:CDS |
| TCGCCTACGTTTCTAGGCCA+AGG | 0.497569 | 2.4:+9517955 | MS.gene31403:CDS |
| TGCTACCAAAGATAGAAGCT+TGG | 0.514624 | 2.4:-9518107 | None:intergenic |
| TACGTTTCTAGGCCAAGGTT+CGG | 0.519680 | 2.4:+9517960 | MS.gene31403:CDS |
| TCCTCACCTTGAATTCTAGC+AGG | 0.529084 | 2.4:-9518165 | None:intergenic |
| ATGATGATCCACCGAGGCAT+CGG | 0.529513 | 2.4:-9518058 | None:intergenic |
| TATGATGTTCAAGACCGTCT+TGG | 0.530862 | 2.4:+9517412 | MS.gene31403:CDS |
| TTGATTGAATGAAACCTGAA+TGG | 0.548923 | 2.4:-9517666 | None:intergenic |
| GCCTTTCGGAACCAACTCCA+TGG | 0.555596 | 2.4:-9518194 | None:intergenic |
| AGCCAATCAACAGCTTTACT+CGG | 0.566559 | 2.4:-9517445 | None:intergenic |
| TATTCCAATTGCCGATGCCT+CGG | 0.573796 | 2.4:+9518047 | MS.gene31403:CDS |
| TCATTCCAAGGACGGAGTGA+TGG | 0.590778 | 2.4:-9518024 | None:intergenic |
| TCGGTCTGTCGTAGCCAAGA+CGG | 0.592319 | 2.4:-9517426 | None:intergenic |
| GAGGATGAGAGCCATGGAGT+TGG | 0.593361 | 2.4:+9518183 | MS.gene31403:CDS |
| TTAATGGGAATGAAGAGCAC+AGG | 0.595991 | 2.4:+9517253 | None:intergenic |
| TGCAACAGAAGAGTTACAAG+AGG | 0.599540 | 2.4:+9517534 | MS.gene31403:CDS |
| GCAATTGGAATATCATTCCA+AGG | 0.606871 | 2.4:-9518036 | None:intergenic |
| TCAAGGAGGCCACATTGTAA+GGG | 0.607094 | 2.4:+9517294 | MS.gene31403:CDS |
| TACCTGTTGCCCTTACAATG+TGG | 0.607186 | 2.4:-9517303 | None:intergenic |
| GCCATGGAGTTGGTTCCGAA+AGG | 0.607349 | 2.4:+9518193 | MS.gene31403:CDS |
| TCCAATTGCCGATGCCTCGG+TGG | 0.612323 | 2.4:+9518050 | MS.gene31403:CDS |
| ATGGGAATGAAGAGCACAGG+AGG | 0.615936 | 2.4:+9517256 | MS.gene31403:CDS |
| AATCGAACACGTCGATCACG+AGG | 0.616513 | 2.4:-9517364 | None:intergenic |
| TTGGAATATCATTCCAAGGA+CGG | 0.624073 | 2.4:-9518032 | None:intergenic |
| AGTAAGGTATACACTGCGAA+AGG | 0.629171 | 2.4:+9517340 | MS.gene31403:CDS |
| CAAGGTGAGGATGAGAGCCA+TGG | 0.637843 | 2.4:+9518177 | MS.gene31403:CDS |
| TCCTGCTAGAATTCAAGGTG+AGG | 0.647750 | 2.4:+9518164 | MS.gene31403:CDS |
| CAGCTGATATGAATAGAACC+GGG | 0.655461 | 2.4:+9517920 | MS.gene31403:CDS |
| AAGAACAAACAACTCAACAC+AGG | 0.662739 | 2.4:+9517777 | MS.gene31403:CDS |
| AATTAGCATCAAATCCAACA+GGG | 0.667862 | 2.4:-9517873 | None:intergenic |
| TGAGAATTAGAAGAAGAGGA+TGG | 0.669324 | 2.4:-9518216 | None:intergenic |
| CTACCAAAGATAGAAGCTTG+GGG | 0.680977 | 2.4:-9518105 | None:intergenic |
| AACTTGATCAGCTTCCACCA+TGG | 0.681586 | 2.4:+9517497 | MS.gene31403:CDS |
| GAACCTTGGCCTAGAAACGT+AGG | 0.688833 | 2.4:-9517958 | None:intergenic |
| AGGCGAATTAACCATAAACC+CGG | 0.693859 | 2.4:-9517938 | None:intergenic |
| TTTGGAATTGGATTCCATGG+TGG | 0.696350 | 2.4:-9517511 | None:intergenic |
| GAAATAGTTCAAGTTCAAGG+AGG | 0.712935 | 2.4:+9517280 | MS.gene31403:CDS |
| GTGATTATGATGATCCACCG+AGG | 0.797740 | 2.4:-9518064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTATAACAGGATTGTGAAT+TGG | + | chr2.4:9517893-9517912 | MS.gene31403:CDS | 25.0% |
| ! | GATTTGATGCTAATTATAAC+AGG | + | chr2.4:9517881-9517900 | MS.gene31403:CDS | 25.0% |
| AATTAGCATCAAATCCAACA+GGG | - | chr2.4:9517876-9517895 | None:intergenic | 30.0% | |
| TAATTAGCATCAAATCCAAC+AGG | - | chr2.4:9517877-9517896 | None:intergenic | 30.0% | |
| TAGAAAAGACAGACATAGTA+AGG | + | chr2.4:9517324-9517343 | MS.gene31403:CDS | 30.0% | |
| TGCAGTAGAAACAAATGAAA+TGG | + | chr2.4:9517576-9517595 | MS.gene31403:CDS | 30.0% | |
| TTGATTGAATGAAACCTGAA+TGG | - | chr2.4:9517669-9517688 | None:intergenic | 30.0% | |
| ! | AATGATCAAACACTTTTCTC+TGG | + | chr2.4:9517844-9517863 | MS.gene31403:CDS | 30.0% |
| !!! | TTTTTTCCAACAACTTCTGT+TGG | + | chr2.4:9517712-9517731 | MS.gene31403:CDS | 30.0% |
| AACCTGAATGGTTATGGTTA+TGG | - | chr2.4:9517657-9517676 | None:intergenic | 35.0% | |
| AAGAACAAACAACTCAACAC+AGG | + | chr2.4:9517777-9517796 | MS.gene31403:CDS | 35.0% | |
| ACAGCTGATATGAATAGAAC+CGG | + | chr2.4:9517919-9517938 | MS.gene31403:CDS | 35.0% | |
| GAATGAAACCTGAATGGTTA+TGG | - | chr2.4:9517663-9517682 | None:intergenic | 35.0% | |
| GCAATTGGAATATCATTCCA+AGG | - | chr2.4:9518039-9518058 | None:intergenic | 35.0% | |
| GTGATGAGAATTAGAAGAAG+AGG | - | chr2.4:9518223-9518242 | None:intergenic | 35.0% | |
| TATGAATAGAACCGGGTTTA+TGG | + | chr2.4:9517927-9517946 | MS.gene31403:CDS | 35.0% | |
| TGAGAATTAGAAGAAGAGGA+TGG | - | chr2.4:9518219-9518238 | None:intergenic | 35.0% | |
| TGTAACTCTTCTGTTGCATT+TGG | - | chr2.4:9517532-9517551 | None:intergenic | 35.0% | |
| TGTATTCCTGCTAGAATTCA+AGG | + | chr2.4:9518159-9518178 | MS.gene31403:CDS | 35.0% | |
| TTGGAATATCATTCCAAGGA+CGG | - | chr2.4:9518035-9518054 | None:intergenic | 35.0% | |
| ! | CATTTGAAGCTGAATTGTCT+TGG | - | chr2.4:9517828-9517847 | None:intergenic | 35.0% |
| ! | GAAATAGTTCAAGTTCAAGG+AGG | + | chr2.4:9517280-9517299 | MS.gene31403:CDS | 35.0% |
| ! | GGAGAAATAGTTCAAGTTCA+AGG | + | chr2.4:9517277-9517296 | MS.gene31403:CDS | 35.0% |
| ! | TCTTCTGTTGCATTTGGAAT+TGG | - | chr2.4:9517526-9517545 | None:intergenic | 35.0% |
| ! | TGTTGATTGGCTCATCAAAA+AGG | + | chr2.4:9517456-9517475 | MS.gene31403:CDS | 35.0% |
| AACAACTCAACACAGGATCT+TGG | + | chr2.4:9517784-9517803 | MS.gene31403:CDS | 40.0% | |
| AGCCAATCAACAGCTTTACT+CGG | - | chr2.4:9517448-9517467 | None:intergenic | 40.0% | |
| AGGCGAATTAACCATAAACC+CGG | - | chr2.4:9517941-9517960 | None:intergenic | 40.0% | |
| AGTAAGGTATACACTGCGAA+AGG | + | chr2.4:9517340-9517359 | MS.gene31403:CDS | 40.0% | |
| ATGGTGAAAAACTGGACTGA+AGG | - | chr2.4:9518008-9518027 | None:intergenic | 40.0% | |
| ATTCCCCAAGCTTCTATCTT+TGG | + | chr2.4:9518102-9518121 | MS.gene31403:CDS | 40.0% | |
| CACCATAACCATAACCATTC+AGG | + | chr2.4:9517652-9517671 | MS.gene31403:CDS | 40.0% | |
| CAGCTGATATGAATAGAACC+GGG | + | chr2.4:9517920-9517939 | MS.gene31403:CDS | 40.0% | |
| CTACCAAAGATAGAAGCTTG+GGG | - | chr2.4:9518108-9518127 | None:intergenic | 40.0% | |
| GATTCACCAACAGAAGTTGT+TGG | - | chr2.4:9517721-9517740 | None:intergenic | 40.0% | |
| GCAGAACAATCAGAATCTTC+TGG | + | chr2.4:9517607-9517626 | MS.gene31403:CDS | 40.0% | |
| GCTACCAAAGATAGAAGCTT+GGG | - | chr2.4:9518109-9518128 | None:intergenic | 40.0% | |
| GTTAATTCGCCTACGTTTCT+AGG | + | chr2.4:9517949-9517968 | MS.gene31403:CDS | 40.0% | |
| TATGATGTTCAAGACCGTCT+TGG | + | chr2.4:9517412-9517431 | MS.gene31403:CDS | 40.0% | |
| TGCAACAGAAGAGTTACAAG+AGG | + | chr2.4:9517534-9517553 | MS.gene31403:CDS | 40.0% | |
| TGCTACCAAAGATAGAAGCT+TGG | - | chr2.4:9518110-9518129 | None:intergenic | 40.0% | |
| TGGTGAAAAACTGGACTGAA+GGG | - | chr2.4:9518007-9518026 | None:intergenic | 40.0% | |
| TTTCTGTCTGATGCTTTGAC+AGG | + | chr2.4:9518132-9518151 | MS.gene31403:CDS | 40.0% | |
| ! | AAGCTTCTATCTTTGGTAGC+AGG | + | chr2.4:9518109-9518128 | MS.gene31403:CDS | 40.0% |
| ! | GCATTTGGAATTGGATTCCA+TGG | - | chr2.4:9517517-9517536 | None:intergenic | 40.0% |
| ! | TTTGGAATTGGATTCCATGG+TGG | - | chr2.4:9517514-9517533 | None:intergenic | 40.0% |
| AACTTGATCAGCTTCCACCA+TGG | + | chr2.4:9517497-9517516 | MS.gene31403:CDS | 45.0% | |
| AGAAGAAGAGGATGGCCTTT+CGG | - | chr2.4:9518211-9518230 | None:intergenic | 45.0% | |
| GACCGAGTAAAGCTGTTGAT+TGG | + | chr2.4:9517443-9517462 | MS.gene31403:CDS | 45.0% | |
| GTGATTATGATGATCCACCG+AGG | - | chr2.4:9518067-9518086 | None:intergenic | 45.0% | |
| TACCTGTTGCCCTTACAATG+TGG | - | chr2.4:9517306-9517325 | None:intergenic | 45.0% | |
| TATTCCAATTGCCGATGCCT+CGG | + | chr2.4:9518047-9518066 | MS.gene31403:CDS | 45.0% | |
| TCAAGGAGGCCACATTGTAA+GGG | + | chr2.4:9517294-9517313 | MS.gene31403:CDS | 45.0% | |
| TCCTCACCTTGAATTCTAGC+AGG | - | chr2.4:9518168-9518187 | None:intergenic | 45.0% | |
| TCCTGCTAGAATTCAAGGTG+AGG | + | chr2.4:9518164-9518183 | MS.gene31403:CDS | 45.0% | |
| TTCAAGGAGGCCACATTGTA+AGG | + | chr2.4:9517293-9517312 | MS.gene31403:CDS | 45.0% | |
| TTCTCTGGATCAAACCCTGT+TGG | + | chr2.4:9517859-9517878 | MS.gene31403:CDS | 45.0% | |
| ! | ACGGAGTGATGGTGAAAAAC+TGG | - | chr2.4:9518016-9518035 | None:intergenic | 45.0% |
| ! | TACGTTTCTAGGCCAAGGTT+CGG | + | chr2.4:9517960-9517979 | MS.gene31403:CDS | 45.0% |
| AATCGAACACGTCGATCACG+AGG | - | chr2.4:9517367-9517386 | None:intergenic | 50.0% | |
| ATGATGATCCACCGAGGCAT+CGG | - | chr2.4:9518061-9518080 | None:intergenic | 50.0% | |
| GAACCTTGGCCTAGAAACGT+AGG | - | chr2.4:9517961-9517980 | None:intergenic | 50.0% | |
| TCATTCCAAGGACGGAGTGA+TGG | - | chr2.4:9518027-9518046 | None:intergenic | 50.0% | |
| TTTCACCATCACTCCGTCCT+TGG | + | chr2.4:9518019-9518038 | MS.gene31403:CDS | 50.0% | |
| ! | ATGGGAATGAAGAGCACAGG+AGG | + | chr2.4:9517256-9517275 | MS.gene31403:CDS | 50.0% |
| !! | TTCGGCTTTTTCCGCCCATA+GGG | + | chr2.4:9517978-9517997 | MS.gene31403:CDS | 50.0% |
| CAAGGTGAGGATGAGAGCCA+TGG | + | chr2.4:9518177-9518196 | MS.gene31403:CDS | 55.0% | |
| GAGGATGAGAGCCATGGAGT+TGG | + | chr2.4:9518183-9518202 | MS.gene31403:CDS | 55.0% | |
| GCCTTTCGGAACCAACTCCA+TGG | - | chr2.4:9518197-9518216 | None:intergenic | 55.0% | |
| GGCCACATTGTAAGGGCAAC+AGG | + | chr2.4:9517301-9517320 | MS.gene31403:CDS | 55.0% | |
| TCGGTCTGTCGTAGCCAAGA+CGG | - | chr2.4:9517429-9517448 | None:intergenic | 55.0% | |
| ! | GCCATGGAGTTGGTTCCGAA+AGG | + | chr2.4:9518193-9518212 | MS.gene31403:CDS | 55.0% |
| ! | TCGCCTACGTTTCTAGGCCA+AGG | + | chr2.4:9517955-9517974 | MS.gene31403:CDS | 55.0% |
| !! | GTTCGGCTTTTTCCGCCCAT+AGG | + | chr2.4:9517977-9517996 | MS.gene31403:CDS | 55.0% |
| !! | TCGGCTTTTTCCGCCCATAG+GGG | + | chr2.4:9517979-9517998 | MS.gene31403:CDS | 55.0% |
| GGACTGAAGGGTCCCCCTAT+GGG | - | chr2.4:9517995-9518014 | None:intergenic | 60.0% | |
| GGGCGGAAAAAGCCGAACCT+TGG | - | chr2.4:9517975-9517994 | None:intergenic | 60.0% | |
| TCCAATTGCCGATGCCTCGG+TGG | + | chr2.4:9518050-9518069 | MS.gene31403:CDS | 60.0% | |
| TGGACTGAAGGGTCCCCCTA+TGG | - | chr2.4:9517996-9518015 | None:intergenic | 60.0% | |
| !! | CGGCTTTTTCCGCCCATAGG+GGG | + | chr2.4:9517980-9517999 | MS.gene31403:CDS | 60.0% |
| !! | TCCACCGAGGCATCGGCAAT+TGG | - | chr2.4:9518054-9518073 | None:intergenic | 60.0% |
| CTGAAGGGTCCCCCTATGGG+CGG | - | chr2.4:9517992-9518011 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 9517256 | 9518245 | 9517256 | ID=MS.gene31403 |
| chr2.4 | mRNA | 9517256 | 9518245 | 9517256 | ID=MS.gene31403.t1;Parent=MS.gene31403 |
| chr2.4 | exon | 9517256 | 9518245 | 9517256 | ID=MS.gene31403.t1.exon1;Parent=MS.gene31403.t1 |
| chr2.4 | CDS | 9517256 | 9518245 | 9517256 | ID=cds.MS.gene31403.t1;Parent=MS.gene31403.t1 |
| Gene Sequence |
| Protein sequence |
