AlfalfaGEDB | MS.gene49347

M. sativa cultivar XinJiangDaYe / MS.gene49347

KEGG: K02721
GO: GO:0005575 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009523 GO:0009536 GO:0009987 GO:0015979 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0098796 GO:0110165
PFAM: PF07123.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49347.t1	AFK35192.1	97.1	137	4	0	1	137	1	137	1.40E-62	248.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49347.t1	Q41387	59.9	137	55	0	1	137	1	137	1.2e-33	144.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49347.t1	I3S4K0	97.1	137	4	0	1	137	1	137	1.0e-62	248.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene49347	0.902077	1.40E-78	-1.69E-46
MS.gene049173	MS.gene49347	0.867213	1.62E-65	-1.69E-46
MS.gene049217	MS.gene49347	0.837925	3.90E-57	-1.69E-46
MS.gene049222	MS.gene49347	0.856982	2.22E-62	-1.69E-46
MS.gene049232	MS.gene49347	0.845655	3.55E-59	-1.69E-46
MS.gene049285	MS.gene49347	0.907816	3.37E-81	-1.69E-46
MS.gene049320	MS.gene49347	0.904334	1.37E-79	-1.69E-46
MS.gene04939	MS.gene49347	0.825347	4.92E-54	-1.69E-46
MS.gene049609	MS.gene49347	0.855774	5.03E-62	-1.69E-46
MS.gene049627	MS.gene49347	0.826279	2.96E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49347.t1	MTR_1g070495	96.350	137	5	0	1	137	1	137	6.99e-93	265
MS.gene49347.t1	MTR_7g096150	76.642	137	31	1	1	137	1	136	8.83e-67	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49347.t1	AT2G30570	63.043	138	45	3	1	137	1	133	7.29e-47	148

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Find 42 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACAACATACCAAGAAC+AGG	0.443082	1.1:-53097324	None:intergenic
AAGAGTGAGGTGTTCAATGG+AGG	0.507963	1.1:+53097996	MS.gene49347:CDS
AAGCAACTCAAACATTGGAA+TGG	0.541259	1.1:+53098041	MS.gene49347:CDS
AAGCCCAGCAGCCATGGCAT+TGG	0.535185	1.1:+53098104	MS.gene49347:CDS
AAGGTTGTTGCTGAGTCCAA+AGG	0.556907	1.1:-53098163	None:intergenic
AGAATGAGCACTGAAGGAAC+CGG	0.435090	1.1:+53098135	MS.gene49347:CDS
AGAGTGAGGTGTTCAATGGA+GGG	0.548761	1.1:+53097997	MS.gene49347:CDS
AGCAACTCAAACATTGGAAT+GGG	0.465387	1.1:+53098042	MS.gene49347:CDS
AGGATTGCCAACAATGGCTA+AGG	0.571754	1.1:+53097969	MS.gene49347:intron
AGGTTGTTGCTGAGTCCAAA+GGG	0.582023	1.1:-53098162	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGAGCCATAGTATAAAA+TGG	-	chr1.1:53097753-53097772	None:intergenic	30.0%
CAAAATCAAAAACCACATGT+TGG	-	chr1.1:53097567-53097586	None:intergenic	30.0%
TCATCATTACAAAATTGGGA+GGG	-	chr1.1:53097643-53097662	None:intergenic	30.0%
TTAGTGCATGTTTGATGTTA+CGG	+	chr1.1:53097521-53097540	MS.gene49347:intron	30.0%
TTCATCATTACAAAATTGGG+AGG	-	chr1.1:53097644-53097663	None:intergenic	30.0%
AAGAACAACATACCAAGAAC+AGG	-	chr1.1:53097327-53097346	None:intergenic	35.0%
AAGCAACTCAAACATTGGAA+TGG	+	chr1.1:53098041-53098060	MS.gene49347:CDS	35.0%
AGCAACTCAAACATTGGAAT+GGG	+	chr1.1:53098042-53098061	MS.gene49347:CDS	35.0%
AGTGAAAGCAACTCAAACAT+TGG	+	chr1.1:53098036-53098055	MS.gene49347:CDS	35.0%
ATTGTTGAAGATCCAACATG+TGG	+	chr1.1:53097552-53097571	MS.gene49347:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	53097237	53098287	53097237	ID=MS.gene49347
chr1.1	mRNA	53097237	53098287	53097237	ID=MS.gene49347.t1;Parent=MS.gene49347
chr1.1	exon	53097237	53097333	53097237	ID=MS.gene49347.t1.exon1;Parent=MS.gene49347.t1
chr1.1	CDS	53097237	53097333	53097237	ID=cds.MS.gene49347.t1;Parent=MS.gene49347.t1
chr1.1	exon	53097971	53098287	53097971	ID=MS.gene49347.t1.exon2;Parent=MS.gene49347.t1
chr1.1	CDS	53097971	53098287	53097971	ID=cds.MS.gene49347.t1;Parent=MS.gene49347.t1

Gene Sequence

>MS.gene49347

ATGGCAACCATCTCAGCAACCACTACAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGTATGTTGTTCTTCCTTGATTTTCATCCTAAATATTGAATAGCATGATACATTGATACTATATCTTTCAATGTCTGATTTATTTACTTACAAGTTACAATTTTCTAGAGAATTTTATTTGTACTTCTGTGGACAGAGATATATATGTTTTAAGATTGGCACATATCTATCAATTTAGAATGCATTAGTTAGTGCATGTTTGATGTTACGGTAAGTTTGATTGTTGAAGATCCAACATGTGGTTTTTGATTTTGTCAAACTCGGTGCAAATTCAAACTTGCACTAAGTTACTAAACTTCCAAGACTACCCTCCCAATTTTGTAATGATGAAAAACTATTTGTCGATTTTTTTTCTCGGGGACTAAACTTTATTTCATAACTTTTATTGAGGACTAGAATAGTGTTTTAAAATTTGAACCATTTTATACTATGGCTCGATTATTTTGGCAATTCGATCACGGATCTGTCCTGATTCAAGCAATTGAAGATGGTTGAATCATGATTCAAATGTCTCGCTCGATTGATATTTGGTTCGGTTTTTAAAACATGAGACTAATTATGATTGTTTACTCCATTTTTAATCGACGGAGGTTTGGATGATTTGGATTGATAAATTAACATTCAATCATTTTATTCAGGATTGCCAACAATGGCTAAGGTGGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCTTCTGTGAGTGAAAGCAACTCAAACATTGGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCTATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGCACTGAAGGAACCGGGCTTCCCTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTGTTCGGTCTTATCTGGGCTCTCTACTTTATCTACGCCTCGAGTCTTGAGGAGGATGAAGAGTCTGGATTATCCCTTTAA

Protein sequence

>MS.gene49347.t1

MATISATTTTASITRACLAQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVSESNSNIGMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL