Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49347.t1 | AFK35192.1 | 97.1 | 137 | 4 | 0 | 1 | 137 | 1 | 137 | 1.40E-62 | 248.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49347.t1 | Q41387 | 59.9 | 137 | 55 | 0 | 1 | 137 | 1 | 137 | 1.2e-33 | 144.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49347.t1 | I3S4K0 | 97.1 | 137 | 4 | 0 | 1 | 137 | 1 | 137 | 1.0e-62 | 248.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49347 | 0.902077 | 1.40E-78 | -1.69E-46 |
| MS.gene049173 | MS.gene49347 | 0.867213 | 1.62E-65 | -1.69E-46 |
| MS.gene049217 | MS.gene49347 | 0.837925 | 3.90E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene49347 | 0.856982 | 2.22E-62 | -1.69E-46 |
| MS.gene049232 | MS.gene49347 | 0.845655 | 3.55E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene49347 | 0.907816 | 3.37E-81 | -1.69E-46 |
| MS.gene049320 | MS.gene49347 | 0.904334 | 1.37E-79 | -1.69E-46 |
| MS.gene04939 | MS.gene49347 | 0.825347 | 4.92E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene49347 | 0.855774 | 5.03E-62 | -1.69E-46 |
| MS.gene049627 | MS.gene49347 | 0.826279 | 2.96E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene49347 | 0.856214 | 3.74E-62 | -1.69E-46 |
| MS.gene049805 | MS.gene49347 | 0.825064 | 5.75E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene49347 | 0.869286 | 3.47E-66 | -1.69E-46 |
| MS.gene050163 | MS.gene49347 | 0.893459 | 6.17E-75 | -1.69E-46 |
| MS.gene050165 | MS.gene49347 | 0.889402 | 2.50E-73 | -1.69E-46 |
| MS.gene050170 | MS.gene49347 | 0.811578 | 6.53E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene49347 | 0.838636 | 2.56E-57 | -1.69E-46 |
| MS.gene050333 | MS.gene49347 | 0.875053 | 4.17E-68 | -1.69E-46 |
| MS.gene050444 | MS.gene49347 | 0.82126 | 4.44E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene49347 | 0.834109 | 3.62E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene49347 | 0.900702 | 5.62E-78 | -1.69E-46 |
| MS.gene050518 | MS.gene49347 | 0.862828 | 3.84E-64 | -1.69E-46 |
| MS.gene050577 | MS.gene49347 | 0.846802 | 1.73E-59 | -1.69E-46 |
| MS.gene050593 | MS.gene49347 | 0.809465 | 1.87E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene49347 | 0.900425 | 7.42E-78 | -1.69E-46 |
| MS.gene050675 | MS.gene49347 | 0.877715 | 5.03E-69 | -1.69E-46 |
| MS.gene050699 | MS.gene49347 | 0.890378 | 1.04E-73 | -1.69E-46 |
| MS.gene050747 | MS.gene49347 | 0.822983 | 1.77E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene49347 | 0.879118 | 1.62E-69 | -1.69E-46 |
| MS.gene05080 | MS.gene49347 | 0.804717 | 1.89E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene49347 | 0.83359 | 4.89E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene49347 | 0.831186 | 1.93E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene49347 | 0.803143 | 4.01E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene49347 | 0.827555 | 1.47E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene49347 | 0.912876 | 1.18E-83 | -1.69E-46 |
| MS.gene05100 | MS.gene49347 | 0.858554 | 7.61E-63 | -1.69E-46 |
| MS.gene051127 | MS.gene49347 | -0.823428 | 1.39E-53 | -1.69E-46 |
| MS.gene051138 | MS.gene49347 | -0.806324 | 8.69E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene49347 | 0.83638 | 9.68E-57 | -1.69E-46 |
| MS.gene051268 | MS.gene49347 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene49347 | 0.833252 | 5.93E-56 | -1.69E-46 |
| MS.gene051551 | MS.gene49347 | 0.883576 | 3.99E-71 | -1.69E-46 |
| MS.gene051564 | MS.gene49347 | 0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene49347 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene49347 | 0.802357 | 5.83E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene49347 | 0.894625 | 2.07E-75 | -1.69E-46 |
| MS.gene051858 | MS.gene49347 | 0.820464 | 6.76E-53 | -1.69E-46 |
| MS.gene051949 | MS.gene49347 | 0.830039 | 3.68E-55 | -1.69E-46 |
| MS.gene052164 | MS.gene49347 | 0.822065 | 2.89E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene49347 | 0.866039 | 3.82E-65 | -1.69E-46 |
| MS.gene052379 | MS.gene49347 | 0.821291 | 4.37E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene49347 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene49347 | 0.815952 | 7.10E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene49347 | 0.830525 | 2.80E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene49347 | 0.833709 | 4.56E-56 | -1.69E-46 |
| MS.gene052822 | MS.gene49347 | 0.808145 | 3.58E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene49347 | 0.826944 | 2.05E-54 | -1.69E-46 |
| MS.gene052825 | MS.gene49347 | 0.819865 | 9.28E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene49347 | 0.805286 | 1.44E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene49347 | 0.815971 | 7.03E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene49347 | 0.819122 | 1.37E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene49347 | 0.854652 | 1.07E-61 | -1.69E-46 |
| MS.gene053203 | MS.gene49347 | 0.856603 | 2.88E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene49347 | 0.841715 | 4.02E-58 | -1.69E-46 |
| MS.gene053213 | MS.gene49347 | 0.885051 | 1.13E-71 | -1.69E-46 |
| MS.gene053286 | MS.gene49347 | 0.887841 | 1.00E-72 | -1.69E-46 |
| MS.gene053322 | MS.gene49347 | 0.814996 | 1.16E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene49347 | 0.809041 | 2.30E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene49347 | 0.82313 | 1.63E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene49347 | 0.809919 | 1.49E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene49347 | 0.843733 | 1.17E-58 | -1.69E-46 |
| MS.gene053632 | MS.gene49347 | 0.829643 | 4.59E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene49347 | 0.831051 | 2.08E-55 | -1.69E-46 |
| MS.gene054408 | MS.gene49347 | 0.819181 | 1.33E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene49347 | 0.838886 | 2.20E-57 | -1.69E-46 |
| MS.gene054600 | MS.gene49347 | 0.878998 | 1.78E-69 | -1.69E-46 |
| MS.gene054642 | MS.gene49347 | 0.882212 | 1.26E-70 | -1.69E-46 |
| MS.gene05470 | MS.gene49347 | 0.855734 | 5.17E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene49347 | 0.90474 | 8.95E-80 | -1.69E-46 |
| MS.gene055154 | MS.gene49347 | -0.803366 | 3.61E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene49347 | 0.825148 | 5.49E-54 | -1.69E-46 |
| MS.gene055212 | MS.gene49347 | 0.838313 | 3.10E-57 | -1.69E-46 |
| MS.gene055362 | MS.gene49347 | 0.923353 | 2.97E-89 | -1.69E-46 |
| MS.gene055499 | MS.gene49347 | 0.82086 | 5.49E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene49347 | 0.886447 | 3.39E-72 | -1.69E-46 |
| MS.gene055577 | MS.gene49347 | 0.841821 | 3.77E-58 | -1.69E-46 |
| MS.gene055636 | MS.gene49347 | 0.829889 | 4.00E-55 | -1.69E-46 |
| MS.gene055638 | MS.gene49347 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene49347 | 0.837266 | 5.75E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene49347 | 0.87047 | 1.42E-66 | -1.69E-46 |
| MS.gene055748 | MS.gene49347 | 0.828864 | 7.09E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene49347 | 0.809705 | 1.66E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene49347 | 0.835772 | 1.38E-56 | -1.69E-46 |
| MS.gene055776 | MS.gene49347 | 0.864827 | 9.18E-65 | -1.69E-46 |
| MS.gene05589 | MS.gene49347 | 0.850243 | 1.93E-60 | -1.69E-46 |
| MS.gene05592 | MS.gene49347 | 0.815426 | 9.30E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene49347 | 0.819748 | 9.87E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene49347 | -0.813837 | 2.09E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene49347 | 0.854821 | 9.53E-62 | -1.69E-46 |
| MS.gene056374 | MS.gene49347 | 0.889269 | 2.82E-73 | -1.69E-46 |
| MS.gene056504 | MS.gene49347 | 0.885339 | 8.85E-72 | -1.69E-46 |
| MS.gene056510 | MS.gene49347 | 0.888266 | 6.88E-73 | -1.69E-46 |
| MS.gene056549 | MS.gene49347 | 0.824385 | 8.31E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene49347 | 0.89818 | 6.83E-77 | -1.69E-46 |
| MS.gene056692 | MS.gene49347 | 0.845096 | 5.03E-59 | -1.69E-46 |
| MS.gene056898 | MS.gene49347 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene056946 | MS.gene49347 | 0.806673 | 7.34E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene49347 | 0.829916 | 3.94E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene49347 | 0.864055 | 1.60E-64 | -1.69E-46 |
| MS.gene057416 | MS.gene49347 | 0.86959 | 2.76E-66 | -1.69E-46 |
| MS.gene057658 | MS.gene49347 | 0.823814 | 1.13E-53 | -1.69E-46 |
| MS.gene057805 | MS.gene49347 | 0.845786 | 3.27E-59 | -1.69E-46 |
| MS.gene057831 | MS.gene49347 | 0.82403 | 1.01E-53 | -1.69E-46 |
| MS.gene057857 | MS.gene49347 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene49347 | 0.812821 | 3.50E-51 | -1.69E-46 |
| MS.gene058338 | MS.gene49347 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene49347 | 0.820475 | 6.73E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene49347 | 0.903337 | 3.85E-79 | -1.69E-46 |
| MS.gene058544 | MS.gene49347 | 0.887289 | 1.63E-72 | -1.69E-46 |
| MS.gene058723 | MS.gene49347 | 0.844485 | 7.34E-59 | -1.69E-46 |
| MS.gene058773 | MS.gene49347 | 0.891876 | 2.66E-74 | -1.69E-46 |
| MS.gene058838 | MS.gene49347 | 0.840436 | 8.71E-58 | -1.69E-46 |
| MS.gene05883 | MS.gene49347 | 0.803343 | 3.65E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene49347 | 0.936101 | 2.97E-97 | -1.69E-46 |
| MS.gene059023 | MS.gene49347 | 0.858293 | 9.10E-63 | -1.69E-46 |
| MS.gene059029 | MS.gene49347 | 0.829552 | 4.83E-55 | -1.69E-46 |
| MS.gene05912 | MS.gene49347 | 0.823595 | 1.27E-53 | -1.69E-46 |
| MS.gene05913 | MS.gene49347 | 0.844328 | 8.09E-59 | -1.69E-46 |
| MS.gene059536 | MS.gene49347 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene49347 | 0.91291 | 1.13E-83 | -1.69E-46 |
| MS.gene059718 | MS.gene49347 | 0.879135 | 1.59E-69 | -1.69E-46 |
| MS.gene059756 | MS.gene49347 | 0.874172 | 8.31E-68 | -1.69E-46 |
| MS.gene059801 | MS.gene49347 | 0.809571 | 1.77E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene49347 | 0.812591 | 3.92E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene49347 | 0.893231 | 7.62E-75 | -1.69E-46 |
| MS.gene059902 | MS.gene49347 | 0.816612 | 5.06E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene49347 | 0.826412 | 2.75E-54 | -1.69E-46 |
| MS.gene060337 | MS.gene49347 | -0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene060341 | MS.gene49347 | 0.839279 | 1.74E-57 | -1.69E-46 |
| MS.gene060482 | MS.gene49347 | 0.81324 | 2.83E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene49347 | 0.864469 | 1.19E-64 | -1.69E-46 |
| MS.gene060727 | MS.gene49347 | 0.815776 | 7.77E-52 | -1.69E-46 |
| MS.gene060728 | MS.gene49347 | 0.815388 | 9.48E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene49347 | 0.888724 | 4.58E-73 | -1.69E-46 |
| MS.gene060778 | MS.gene49347 | 0.817087 | 3.95E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene49347 | 0.88319 | 5.53E-71 | -1.69E-46 |
| MS.gene06092 | MS.gene49347 | 0.820757 | 5.80E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene49347 | 0.856955 | 2.27E-62 | -1.69E-46 |
| MS.gene061134 | MS.gene49347 | 0.823563 | 1.29E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene49347 | 0.882897 | 7.08E-71 | -1.69E-46 |
| MS.gene061200 | MS.gene49347 | 0.814633 | 1.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49347.t1 | MTR_1g070495 | 96.350 | 137 | 5 | 0 | 1 | 137 | 1 | 137 | 6.99e-93 | 265 |
| MS.gene49347.t1 | MTR_7g096150 | 76.642 | 137 | 31 | 1 | 1 | 137 | 1 | 136 | 8.83e-67 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49347.t1 | AT2G30570 | 63.043 | 138 | 45 | 3 | 1 | 137 | 1 | 133 | 7.29e-47 | 148 |
Find 42 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTGTGTTCGGTCTTATC+TGG | 0.197833 | 1.1:+53098202 | MS.gene49347:CDS |
| GTTTCATCCTCTCCTGTTCT+TGG | 0.207350 | 1.1:+53097312 | MS.gene49347:CDS |
| TCCACCAATGCCATGGCTGC+TGG | 0.247914 | 1.1:-53098108 | None:intergenic |
| GGACTCAGCAACAACCTTCT+TGG | 0.302937 | 1.1:+53098168 | MS.gene49347:CDS |
| CTTCCCACCTTAGCCATTGT+TGG | 0.376821 | 1.1:-53097976 | None:intergenic |
| TTCATTTCAAGCAATTTAAA+GGG | 0.388432 | 1.1:-53098280 | None:intergenic |
| TAAGACCGAACACACCAAAA+AGG | 0.399989 | 1.1:-53098197 | None:intergenic |
| CCACCAATGCCATGGCTGCT+GGG | 0.401839 | 1.1:-53098107 | None:intergenic |
| CCCAGCAGCCATGGCATTGG+TGG | 0.403670 | 1.1:+53098107 | MS.gene49347:CDS |
| GAAGGAACCGGGCTTCCCTT+TGG | 0.425729 | 1.1:+53098147 | MS.gene49347:CDS |
| TTGCTTTCACTCACAGAAGA+AGG | 0.432700 | 1.1:-53098024 | None:intergenic |
| AGAATGAGCACTGAAGGAAC+CGG | 0.435090 | 1.1:+53098135 | MS.gene49347:CDS |
| TGGTGTGTTCGGTCTTATCT+GGG | 0.435857 | 1.1:+53098203 | MS.gene49347:CDS |
| AAGAACAACATACCAAGAAC+AGG | 0.443082 | 1.1:-53097324 | None:intergenic |
| GGGAAGAGTGAGGTGTTCAA+TGG | 0.445647 | 1.1:+53097993 | MS.gene49347:CDS |
| CTTGAGGAGGATGAAGAGTC+TGG | 0.449954 | 1.1:+53098252 | MS.gene49347:CDS |
| AGCAACTCAAACATTGGAAT+GGG | 0.465387 | 1.1:+53098042 | MS.gene49347:CDS |
| TCAGCAACAACCTTCTTGGT+TGG | 0.473672 | 1.1:+53098172 | MS.gene49347:CDS |
| AGTGAAAGCAACTCAAACAT+TGG | 0.493591 | 1.1:+53098036 | MS.gene49347:CDS |
| AGTTGTAGTGGTTGCTGAGA+TGG | 0.506917 | 1.1:-53097244 | None:intergenic |
| AAGAGTGAGGTGTTCAATGG+AGG | 0.507963 | 1.1:+53097996 | MS.gene49347:CDS |
| AAGCCCAGCAGCCATGGCAT+TGG | 0.535185 | 1.1:+53098104 | MS.gene49347:CDS |
| AAGCAACTCAAACATTGGAA+TGG | 0.541259 | 1.1:+53098041 | MS.gene49347:CDS |
| ATTGCCAACAATGGCTAAGG+TGG | 0.548615 | 1.1:+53097972 | MS.gene49347:CDS |
| AGAGTGAGGTGTTCAATGGA+GGG | 0.548761 | 1.1:+53097997 | MS.gene49347:CDS |
| AAGGTTGTTGCTGAGTCCAA+AGG | 0.556907 | 1.1:-53098163 | None:intergenic |
| TCTTTCATCCACCAATGCCA+TGG | 0.558482 | 1.1:-53098115 | None:intergenic |
| GCTGAGTCCAAAGGGAAGCC+CGG | 0.571088 | 1.1:-53098154 | None:intergenic |
| AGGATTGCCAACAATGGCTA+AGG | 0.571754 | 1.1:+53097969 | MS.gene49347:intron |
| TATCTACGCCTCGAGTCTTG+AGG | 0.577922 | 1.1:+53098236 | MS.gene49347:CDS |
| AGGTTGTTGCTGAGTCCAAA+GGG | 0.582023 | 1.1:-53098162 | None:intergenic |
| GATGAAAGAATGAGCACTGA+AGG | 0.583467 | 1.1:+53098129 | MS.gene49347:CDS |
| GAATGAGCACTGAAGGAACC+GGG | 0.588005 | 1.1:+53098136 | MS.gene49347:CDS |
| TATGTCAAGCCCAGCAGCCA+TGG | 0.588442 | 1.1:+53098098 | MS.gene49347:CDS |
| TTATTCAGGATTGCCAACAA+TGG | 0.611540 | 1.1:+53097963 | MS.gene49347:intron |
| TTGCCAACAATGGCTAAGGT+GGG | 0.634166 | 1.1:+53097973 | MS.gene49347:CDS |
| TTCATCCTCCTCAAGACTCG+AGG | 0.637138 | 1.1:-53098244 | None:intergenic |
| CTACGCCTCGAGTCTTGAGG+AGG | 0.641041 | 1.1:+53098239 | MS.gene49347:CDS |
| CAACATACCAAGAACAGGAG+AGG | 0.652090 | 1.1:-53097319 | None:intergenic |
| GGTGATCGATGCAGTTGTAG+TGG | 0.659864 | 1.1:-53097256 | None:intergenic |
| TGGCTAAGGTGGGAAGAGTG+AGG | 0.666585 | 1.1:+53097983 | MS.gene49347:CDS |
| GGAGAGGATGAAACTGCAAG+AGG | 0.693611 | 1.1:-53097303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATATATGTTTTAAGAT+TGG | + | chr1.1:53097469-53097488 | MS.gene49347:intron | 15.0% |
| !!! | TTATTTCATAACTTTTATTG+AGG | + | chr1.1:53097701-53097720 | MS.gene49347:intron | 15.0% |
| !!! | TTTTTCATCATTACAAAATT+GGG | - | chr1.1:53097647-53097666 | None:intergenic | 15.0% |
| !! | TATCATGCTATTCAATATTT+AGG | - | chr1.1:53097363-53097382 | None:intergenic | 20.0% |
| !!! | AACATTCAATCATTTTATTC+AGG | + | chr1.1:53097949-53097968 | MS.gene49347:intron | 20.0% |
| !!! | AATATTTAGGATGAAAATCA+AGG | - | chr1.1:53097350-53097369 | None:intergenic | 20.0% |
| !!! | ATTTGAACCATTTTATACTA+TGG | + | chr1.1:53097743-53097762 | MS.gene49347:intron | 20.0% |
| !!! | GTTTTTCATCATTACAAAAT+TGG | - | chr1.1:53097648-53097667 | None:intergenic | 20.0% |
| !!! | TATTTGTCGATTTTTTTTCT+CGG | + | chr1.1:53097668-53097687 | MS.gene49347:intron | 20.0% |
| !!! | ATTTGTCGATTTTTTTTCTC+GGG | + | chr1.1:53097669-53097688 | MS.gene49347:intron | 25.0% |
| !!! | GAATTTTATTTGTACTTCTG+TGG | + | chr1.1:53097442-53097461 | MS.gene49347:intron | 25.0% |
| !!! | GTTTTTGATTTTGTCAAACT+CGG | + | chr1.1:53097574-53097593 | MS.gene49347:intron | 25.0% |
| !!! | TTTACTCCATTTTTAATCGA+CGG | + | chr1.1:53097898-53097917 | MS.gene49347:intron | 25.0% |
| AATCGAGCCATAGTATAAAA+TGG | - | chr1.1:53097753-53097772 | None:intergenic | 30.0% | |
| CAAAATCAAAAACCACATGT+TGG | - | chr1.1:53097567-53097586 | None:intergenic | 30.0% | |
| TCATCATTACAAAATTGGGA+GGG | - | chr1.1:53097643-53097662 | None:intergenic | 30.0% | |
| TTAGTGCATGTTTGATGTTA+CGG | + | chr1.1:53097521-53097540 | MS.gene49347:intron | 30.0% | |
| TTCATCATTACAAAATTGGG+AGG | - | chr1.1:53097644-53097663 | None:intergenic | 30.0% | |
| ! | ATACTATGGCTCGATTATTT+TGG | + | chr1.1:53097757-53097776 | MS.gene49347:intron | 30.0% |
| !!! | TTATTTTGGCAATTCGATCA+CGG | + | chr1.1:53097771-53097790 | MS.gene49347:intron | 30.0% |
| !!! | TTTGTCGATTTTTTTTCTCG+GGG | + | chr1.1:53097670-53097689 | MS.gene49347:intron | 30.0% |
| AAGAACAACATACCAAGAAC+AGG | - | chr1.1:53097327-53097346 | None:intergenic | 35.0% | |
| AAGCAACTCAAACATTGGAA+TGG | + | chr1.1:53098041-53098060 | MS.gene49347:CDS | 35.0% | |
| AGCAACTCAAACATTGGAAT+GGG | + | chr1.1:53098042-53098061 | MS.gene49347:CDS | 35.0% | |
| AGTGAAAGCAACTCAAACAT+TGG | + | chr1.1:53098036-53098055 | MS.gene49347:CDS | 35.0% | |
| ATTGTTGAAGATCCAACATG+TGG | + | chr1.1:53097552-53097571 | MS.gene49347:intron | 35.0% | |
| CATCTTCAATTGCTTGAATC+AGG | - | chr1.1:53097803-53097822 | None:intergenic | 35.0% | |
| CTGATTCAAGCAATTGAAGA+TGG | + | chr1.1:53097801-53097820 | MS.gene49347:intron | 35.0% | |
| TTATTCAGGATTGCCAACAA+TGG | + | chr1.1:53097963-53097982 | MS.gene49347:intron | 35.0% | |
| ! | AAACCTCCGTCGATTAAAAA+TGG | - | chr1.1:53097907-53097926 | None:intergenic | 35.0% |
| ! | ATTTTTAATCGACGGAGGTT+TGG | + | chr1.1:53097906-53097925 | MS.gene49347:intron | 35.0% |
| CAAAAAGGATCCAACCAAGA+AGG | - | chr1.1:53098185-53098204 | None:intergenic | 40.0% | |
| CGCTCGATTGATATTTGGTT+CGG | + | chr1.1:53097846-53097865 | MS.gene49347:intron | 40.0% | |
| TAAGACCGAACACACCAAAA+AGG | - | chr1.1:53098200-53098219 | None:intergenic | 40.0% | |
| TGTCTCGCTCGATTGATATT+TGG | + | chr1.1:53097841-53097860 | MS.gene49347:intron | 40.0% | |
| TTGCTTTCACTCACAGAAGA+AGG | - | chr1.1:53098027-53098046 | None:intergenic | 40.0% | |
| ! | CTTCTTGGTTGGATCCTTTT+TGG | + | chr1.1:53098183-53098202 | MS.gene49347:CDS | 40.0% |
| ! | TCTTTTGTGCAAGACATGCA+CGG | - | chr1.1:53097281-53097300 | None:intergenic | 40.0% |
| !! | ACTCCATTTTTAATCGACGG+AGG | + | chr1.1:53097901-53097920 | MS.gene49347:intron | 40.0% |
| !! | GATGAAAGAATGAGCACTGA+AGG | + | chr1.1:53098129-53098148 | MS.gene49347:CDS | 40.0% |
| !! | TGGATCCTTTTTGGTGTGTT+CGG | + | chr1.1:53098192-53098211 | MS.gene49347:CDS | 40.0% |
| AAGGTTGTTGCTGAGTCCAA+AGG | - | chr1.1:53098166-53098185 | None:intergenic | 45.0% | |
| AGGATTGCCAACAATGGCTA+AGG | + | chr1.1:53097969-53097988 | MS.gene49347:intron | 45.0% | |
| AGGTTGTTGCTGAGTCCAAA+GGG | - | chr1.1:53098165-53098184 | None:intergenic | 45.0% | |
| AGTTGTAGTGGTTGCTGAGA+TGG | - | chr1.1:53097247-53097266 | None:intergenic | 45.0% | |
| ATTGCCAACAATGGCTAAGG+TGG | + | chr1.1:53097972-53097991 | MS.gene49347:CDS | 45.0% | |
| CAAAATTGGGAGGGTAGTCT+TGG | - | chr1.1:53097634-53097653 | None:intergenic | 45.0% | |
| CAACATACCAAGAACAGGAG+AGG | - | chr1.1:53097322-53097341 | None:intergenic | 45.0% | |
| GTTTCATCCTCTCCTGTTCT+TGG | + | chr1.1:53097312-53097331 | MS.gene49347:CDS | 45.0% | |
| TCAGCAACAACCTTCTTGGT+TGG | + | chr1.1:53098172-53098191 | MS.gene49347:CDS | 45.0% | |
| TCTTTCATCCACCAATGCCA+TGG | - | chr1.1:53098118-53098137 | None:intergenic | 45.0% | |
| TTGCCAACAATGGCTAAGGT+GGG | + | chr1.1:53097973-53097992 | MS.gene49347:CDS | 45.0% | |
| ! | AAGAGTGAGGTGTTCAATGG+AGG | + | chr1.1:53097996-53098015 | MS.gene49347:CDS | 45.0% |
| ! | AGAGTGAGGTGTTCAATGGA+GGG | + | chr1.1:53097997-53098016 | MS.gene49347:CDS | 45.0% |
| ! | CTTTTGTGCAAGACATGCAC+GGG | - | chr1.1:53097280-53097299 | None:intergenic | 45.0% |
| ! | TGGTGTGTTCGGTCTTATCT+GGG | + | chr1.1:53098203-53098222 | MS.gene49347:CDS | 45.0% |
| ! | TTGGTGTGTTCGGTCTTATC+TGG | + | chr1.1:53098202-53098221 | MS.gene49347:CDS | 45.0% |
| !! | AGAATGAGCACTGAAGGAAC+CGG | + | chr1.1:53098135-53098154 | MS.gene49347:CDS | 45.0% |
| CGACGGAGGTTTGGATGATT+TGG | + | chr1.1:53097915-53097934 | MS.gene49347:intron | 50.0% | |
| CTTCCCACCTTAGCCATTGT+TGG | - | chr1.1:53097979-53097998 | None:intergenic | 50.0% | |
| CTTGAGGAGGATGAAGAGTC+TGG | + | chr1.1:53098252-53098271 | MS.gene49347:CDS | 50.0% | |
| GGACTCAGCAACAACCTTCT+TGG | + | chr1.1:53098168-53098187 | MS.gene49347:CDS | 50.0% | |
| GGAGAGGATGAAACTGCAAG+AGG | - | chr1.1:53097306-53097325 | None:intergenic | 50.0% | |
| GGTGATCGATGCAGTTGTAG+TGG | - | chr1.1:53097259-53097278 | None:intergenic | 50.0% | |
| TATCTACGCCTCGAGTCTTG+AGG | + | chr1.1:53098236-53098255 | MS.gene49347:CDS | 50.0% | |
| TTCATCCTCCTCAAGACTCG+AGG | - | chr1.1:53098247-53098266 | None:intergenic | 50.0% | |
| ! | GGGAAGAGTGAGGTGTTCAA+TGG | + | chr1.1:53097993-53098012 | MS.gene49347:CDS | 50.0% |
| !! | GAATGAGCACTGAAGGAACC+GGG | + | chr1.1:53098136-53098155 | MS.gene49347:CDS | 50.0% |
| TATGTCAAGCCCAGCAGCCA+TGG | + | chr1.1:53098098-53098117 | MS.gene49347:CDS | 55.0% | |
| TGGCTAAGGTGGGAAGAGTG+AGG | + | chr1.1:53097983-53098002 | MS.gene49347:CDS | 55.0% | |
| AAGCCCAGCAGCCATGGCAT+TGG | + | chr1.1:53098104-53098123 | MS.gene49347:CDS | 60.0% | |
| CCACCAATGCCATGGCTGCT+GGG | - | chr1.1:53098110-53098129 | None:intergenic | 60.0% | |
| CTACGCCTCGAGTCTTGAGG+AGG | + | chr1.1:53098239-53098258 | MS.gene49347:CDS | 60.0% | |
| GAAGGAACCGGGCTTCCCTT+TGG | + | chr1.1:53098147-53098166 | MS.gene49347:CDS | 60.0% | |
| GCTGAGTCCAAAGGGAAGCC+CGG | - | chr1.1:53098157-53098176 | None:intergenic | 60.0% | |
| TCCACCAATGCCATGGCTGC+TGG | - | chr1.1:53098111-53098130 | None:intergenic | 60.0% | |
| ! | CCCAGCAGCCATGGCATTGG+TGG | + | chr1.1:53098107-53098126 | MS.gene49347:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53097237 | 53098287 | 53097237 | ID=MS.gene49347 |
| chr1.1 | mRNA | 53097237 | 53098287 | 53097237 | ID=MS.gene49347.t1;Parent=MS.gene49347 |
| chr1.1 | exon | 53097237 | 53097333 | 53097237 | ID=MS.gene49347.t1.exon1;Parent=MS.gene49347.t1 |
| chr1.1 | CDS | 53097237 | 53097333 | 53097237 | ID=cds.MS.gene49347.t1;Parent=MS.gene49347.t1 |
| chr1.1 | exon | 53097971 | 53098287 | 53097971 | ID=MS.gene49347.t1.exon2;Parent=MS.gene49347.t1 |
| chr1.1 | CDS | 53097971 | 53098287 | 53097971 | ID=cds.MS.gene49347.t1;Parent=MS.gene49347.t1 |
| Gene Sequence |
| Protein sequence |
