Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51519.t1 | XP_024633684.1 | 94.2 | 326 | 18 | 1 | 1 | 325 | 31 | 356 | 2.00E-169 | 605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51519.t1 | A0A396IQV3 | 94.2 | 326 | 18 | 1 | 1 | 325 | 31 | 356 | 1.5e-169 | 605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene51519 | 0.810486 | 1.13E-50 | -1.69E-46 |
| MS.gene049171 | MS.gene51519 | 0.870081 | 1.91E-66 | -1.69E-46 |
| MS.gene049173 | MS.gene51519 | 0.837254 | 5.79E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene51519 | 0.833906 | 4.07E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene51519 | 0.851828 | 6.88E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene51519 | 0.853642 | 2.09E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene51519 | 0.8316 | 1.52E-55 | -1.69E-46 |
| MS.gene04939 | MS.gene51519 | 0.819287 | 1.26E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene51519 | 0.817535 | 3.14E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene51519 | 0.841681 | 4.10E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene51519 | 0.853577 | 2.18E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene51519 | 0.845327 | 4.35E-59 | -1.69E-46 |
| MS.gene05010 | MS.gene51519 | 0.808654 | 2.79E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene51519 | 0.835033 | 2.12E-56 | -1.69E-46 |
| MS.gene050165 | MS.gene51519 | 0.833424 | 5.38E-56 | -1.69E-46 |
| MS.gene050323 | MS.gene51519 | 0.830742 | 2.47E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene51519 | 0.853525 | 2.26E-61 | -1.69E-46 |
| MS.gene050444 | MS.gene51519 | 0.849298 | 3.54E-60 | -1.69E-46 |
| MS.gene050504 | MS.gene51519 | 0.82676 | 2.27E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene51519 | 0.814409 | 1.56E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene51519 | 0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene51519 | 0.805615 | 1.23E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene51519 | 0.81157 | 6.55E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene51519 | 0.85647 | 3.15E-62 | -1.69E-46 |
| MS.gene050675 | MS.gene51519 | 0.818745 | 1.67E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene51519 | 0.828467 | 8.85E-55 | -1.69E-46 |
| MS.gene050747 | MS.gene51519 | 0.841764 | 3.90E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene51519 | 0.846331 | 2.32E-59 | -1.69E-46 |
| MS.gene05080 | MS.gene51519 | 0.841389 | 4.90E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene51519 | 0.862142 | 6.25E-64 | -1.69E-46 |
| MS.gene050868 | MS.gene51519 | 0.812536 | 4.03E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene51519 | 0.808995 | 2.36E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene51519 | 0.830069 | 3.61E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene51519 | 0.819764 | 9.79E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene51519 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene51519 | 0.852851 | 3.52E-61 | -1.69E-46 |
| MS.gene051317 | MS.gene51519 | 0.826249 | 3.01E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene51519 | 0.806145 | 9.48E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene51519 | 0.822827 | 1.92E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene51519 | 0.835852 | 1.32E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene51519 | 0.808202 | 3.48E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene51519 | 0.855686 | 5.34E-62 | -1.69E-46 |
| MS.gene051949 | MS.gene51519 | 0.819883 | 9.19E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene51519 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene51519 | 0.831505 | 1.61E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene51519 | 0.842563 | 2.40E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene51519 | 0.823955 | 1.05E-53 | -1.69E-46 |
| MS.gene052506 | MS.gene51519 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene51519 | 0.8095 | 1.83E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene51519 | 0.817544 | 3.12E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene51519 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene51519 | 0.8122 | 4.78E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene51519 | 0.853491 | 2.31E-61 | -1.69E-46 |
| MS.gene052872 | MS.gene51519 | 0.859899 | 3.01E-63 | -1.69E-46 |
| MS.gene052966 | MS.gene51519 | 0.829807 | 4.19E-55 | -1.69E-46 |
| MS.gene053103 | MS.gene51519 | 0.83841 | 2.92E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene51519 | 0.855138 | 7.71E-62 | -1.69E-46 |
| MS.gene053107 | MS.gene51519 | 0.811885 | 5.60E-51 | -1.69E-46 |
| MS.gene053117 | MS.gene51519 | 0.800268 | 1.56E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene51519 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene51519 | 0.846417 | 2.20E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene51519 | 0.833818 | 4.29E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene51519 | 0.829855 | 4.07E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene51519 | 0.812027 | 5.21E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene51519 | 0.813569 | 2.40E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene51519 | 0.826445 | 2.70E-54 | -1.69E-46 |
| MS.gene053480 | MS.gene51519 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene51519 | 0.842063 | 3.25E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene51519 | 0.83846 | 2.84E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene51519 | 0.845771 | 3.30E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene51519 | 0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene51519 | 0.827277 | 1.71E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene51519 | 0.866917 | 2.01E-65 | -1.69E-46 |
| MS.gene054642 | MS.gene51519 | 0.854724 | 1.02E-61 | -1.69E-46 |
| MS.gene054706 | MS.gene51519 | -0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene51519 | 0.82501 | 5.92E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene51519 | 0.880896 | 3.76E-70 | -1.69E-46 |
| MS.gene055212 | MS.gene51519 | 0.827487 | 1.52E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene51519 | 0.825363 | 4.88E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene51519 | 0.831745 | 1.40E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene51519 | 0.845434 | 4.07E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene51519 | 0.845731 | 3.38E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene51519 | 0.843837 | 1.10E-58 | -1.69E-46 |
| MS.gene055636 | MS.gene51519 | 0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene51519 | 0.812886 | 3.38E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene51519 | 0.80241 | 5.68E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene51519 | 0.806753 | 7.06E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene51519 | 0.863418 | 2.53E-64 | -1.69E-46 |
| MS.gene055750 | MS.gene51519 | 0.825279 | 5.11E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene51519 | 0.851981 | 6.23E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene51519 | 0.829048 | 6.40E-55 | -1.69E-46 |
| MS.gene05592 | MS.gene51519 | 0.827837 | 1.25E-54 | -1.69E-46 |
| MS.gene055941 | MS.gene51519 | 0.857201 | 1.92E-62 | -1.69E-46 |
| MS.gene055956 | MS.gene51519 | -0.822632 | 2.13E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene51519 | 0.819485 | 1.13E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene51519 | 0.83757 | 4.81E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene51519 | 0.819414 | 1.18E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene51519 | 0.846989 | 1.54E-59 | -1.69E-46 |
| MS.gene056692 | MS.gene51519 | 0.8366 | 8.51E-57 | -1.69E-46 |
| MS.gene056897 | MS.gene51519 | 0.81662 | 5.04E-52 | -1.69E-46 |
| MS.gene056898 | MS.gene51519 | 0.817401 | 3.36E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene51519 | 0.801951 | 7.07E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene51519 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene057246 | MS.gene51519 | 0.810209 | 1.29E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene51519 | 0.840361 | 9.11E-58 | -1.69E-46 |
| MS.gene057332 | MS.gene51519 | 0.82596 | 3.52E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene51519 | 0.84624 | 2.46E-59 | -1.69E-46 |
| MS.gene057658 | MS.gene51519 | 0.8515 | 8.53E-61 | -1.69E-46 |
| MS.gene057831 | MS.gene51519 | 0.831779 | 1.38E-55 | -1.69E-46 |
| MS.gene057926 | MS.gene51519 | 0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene51519 | 0.832562 | 8.80E-56 | -1.69E-46 |
| MS.gene058338 | MS.gene51519 | 0.837671 | 4.53E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene51519 | 0.814459 | 1.52E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene51519 | 0.852105 | 5.74E-61 | -1.69E-46 |
| MS.gene058544 | MS.gene51519 | 0.848352 | 6.48E-60 | -1.69E-46 |
| MS.gene058723 | MS.gene51519 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene51519 | 0.851189 | 1.04E-60 | -1.69E-46 |
| MS.gene058838 | MS.gene51519 | 0.871063 | 9.09E-67 | -1.69E-46 |
| MS.gene059022 | MS.gene51519 | 0.832519 | 9.03E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene51519 | 0.855395 | 6.50E-62 | -1.69E-46 |
| MS.gene059029 | MS.gene51519 | 0.815928 | 7.19E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene51519 | 0.815507 | 8.92E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene51519 | 0.808695 | 2.73E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene51519 | 0.840569 | 8.04E-58 | -1.69E-46 |
| MS.gene059455 | MS.gene51519 | 0.812454 | 4.21E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene51519 | 0.852512 | 4.40E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene51519 | 0.837173 | 6.07E-57 | -1.69E-46 |
| MS.gene059756 | MS.gene51519 | 0.817146 | 3.84E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene51519 | 0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene51519 | 0.800826 | 1.20E-48 | -1.69E-46 |
| MS.gene059960 | MS.gene51519 | 0.830837 | 2.35E-55 | -1.69E-46 |
| MS.gene060728 | MS.gene51519 | 0.800456 | 1.43E-48 | -1.69E-46 |
| MS.gene060762 | MS.gene51519 | 0.862392 | 5.24E-64 | -1.69E-46 |
| MS.gene06077 | MS.gene51519 | 0.816515 | 5.32E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene51519 | 0.821623 | 3.66E-53 | -1.69E-46 |
| MS.gene060818 | MS.gene51519 | 0.821104 | 4.82E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene51519 | 0.837294 | 5.66E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene51519 | 0.862542 | 4.71E-64 | -1.69E-46 |
| MS.gene060982 | MS.gene51519 | 0.825859 | 3.73E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene51519 | 0.812858 | 3.43E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene51519 | 0.861163 | 1.24E-63 | -1.69E-46 |
| MS.gene061200 | MS.gene51519 | 0.812341 | 4.45E-51 | -1.69E-46 |
| MS.gene061231 | MS.gene51519 | 0.808133 | 3.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51519.t1 | MTR_3g007470 | 93.598 | 328 | 18 | 2 | 1 | 325 | 31 | 358 | 0.0 | 598 |
| MS.gene51519.t1 | MTR_3g072830 | 64.371 | 334 | 117 | 2 | 3 | 334 | 97 | 430 | 2.20e-150 | 431 |
| MS.gene51519.t1 | MTR_3g072840 | 63.030 | 330 | 117 | 5 | 9 | 334 | 101 | 429 | 2.23e-126 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51519.t1 | AT2G41705 | 57.910 | 335 | 133 | 4 | 3 | 334 | 114 | 443 | 1.33e-116 | 346 |
| MS.gene51519.t1 | AT2G41705 | 57.910 | 335 | 133 | 4 | 3 | 334 | 114 | 443 | 1.33e-116 | 346 |
| MS.gene51519.t1 | AT2G41705 | 57.910 | 335 | 133 | 4 | 3 | 334 | 114 | 443 | 1.33e-116 | 346 |
| MS.gene51519.t1 | AT2G41705 | 57.910 | 335 | 133 | 4 | 3 | 334 | 114 | 443 | 1.33e-116 | 346 |
Find 69 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGAATTGCCAAAGTTAT+TGG | 0.149331 | 3.4:+3088066 | MS.gene51519:CDS |
| TATACTCTGGACAAGTTATT+TGG | 0.235731 | 3.4:+3088935 | MS.gene51519:CDS |
| GTTTCAAGTGGCTACTTATA+AGG | 0.261731 | 3.4:+3089992 | MS.gene51519:CDS |
| CGATTAAATGGACATGGTTT+AGG | 0.261909 | 3.4:+3090240 | MS.gene51519:CDS |
| CTCTTGGTGTGTGGATTAGA+TGG | 0.264943 | 3.4:+3090208 | MS.gene51519:CDS |
| CACGACAATATTACCTTCTA+TGG | 0.281497 | 3.4:-3091222 | None:intergenic |
| TGCTTCATATTTGATTCATT+TGG | 0.285021 | 3.4:+3088093 | MS.gene51519:CDS |
| GATCAAGAGGTTTGTTGAAT+TGG | 0.285501 | 3.4:+3090262 | MS.gene51519:CDS |
| ATGCTTGAACTCAGTGTTAC+TGG | 0.290373 | 3.4:+3089277 | MS.gene51519:CDS |
| CCTTGACCTTCCTTCTAATA+TGG | 0.294484 | 3.4:+3089000 | MS.gene51519:CDS |
| CTAAACCATGTCCATTTAAT+CGG | 0.327520 | 3.4:-3090239 | None:intergenic |
| CTGTGGATCGCTTGCATTGT+TGG | 0.347554 | 3.4:+3090183 | MS.gene51519:CDS |
| GGCTTGTTATGGGGTATTAG+TGG | 0.347642 | 3.4:+3090117 | MS.gene51519:CDS |
| AACTCAGTGTTACTGGGAAT+TGG | 0.357866 | 3.4:+3089284 | MS.gene51519:CDS |
| AATTGGCTCTTTGTTGTGCT+TGG | 0.359346 | 3.4:+3089301 | MS.gene51519:CDS |
| GTTGTGCTTGGCTTTCTAAT+AGG | 0.360921 | 3.4:+3089313 | MS.gene51519:CDS |
| TAAAATAGTGTCACAATCTC+TGG | 0.369625 | 3.4:-3090999 | None:intergenic |
| GGCATACAGTTTGGCCTGTT+GGG | 0.372371 | 3.4:+3091025 | MS.gene51519:CDS |
| AACTTTGGCAATTCTTTACT+AGG | 0.383927 | 3.4:-3088061 | None:intergenic |
| GCTTGCATTGTTGGACCTCT+TGG | 0.384115 | 3.4:+3090192 | MS.gene51519:CDS |
| GATGCCTTCCACCTTTGCCT+TGG | 0.402396 | 3.4:-3090052 | None:intergenic |
| GTCTAACAACGTTCAGCGGC+TGG | 0.427914 | 3.4:+3089245 | MS.gene51519:CDS |
| GCACTGACAACTGGTTACTT+AGG | 0.430040 | 3.4:+3089220 | MS.gene51519:CDS |
| CTGGCTGTTGCACTGACAAC+TGG | 0.430597 | 3.4:+3089211 | MS.gene51519:CDS |
| GTGACAGTTTATTTACTTGA+AGG | 0.431162 | 3.4:+3091242 | MS.gene51519:CDS |
| ATCAAATGTGTCCAAGCATC+TGG | 0.432909 | 3.4:+3089192 | MS.gene51519:CDS |
| TTGTTGAATTGGATGCGATT+TGG | 0.438896 | 3.4:+3090273 | MS.gene51519:CDS |
| TATCCCAAATATGATGGAAA+AGG | 0.447822 | 3.4:-3089956 | None:intergenic |
| AAATTCCAGGTAGCCATAGA+AGG | 0.448639 | 3.4:+3091209 | MS.gene51519:intron |
| AAAGTAGAGACCATATTAGA+AGG | 0.455328 | 3.4:-3089010 | None:intergenic |
| GAAGCATTATCCAATAACTT+TGG | 0.459077 | 3.4:-3088076 | None:intergenic |
| CACTGACAACTGGTTACTTA+GGG | 0.466187 | 3.4:+3089221 | MS.gene51519:CDS |
| TCTCTTTCAATGCTTAAAAG+AGG | 0.475069 | 3.4:-3087757 | None:intergenic |
| TGAGAGAAAGCGACCACCCT+TGG | 0.482052 | 3.4:+3091092 | MS.gene51519:CDS |
| CAGTGCAACAGCCAGATGCT+TGG | 0.487910 | 3.4:-3089203 | None:intergenic |
| AGGCATACAGTTTGGCCTGT+TGG | 0.489910 | 3.4:+3091024 | MS.gene51519:CDS |
| CTCTTTCAATGCTTAAAAGA+GGG | 0.490143 | 3.4:-3087756 | None:intergenic |
| AGATTCTGAAGACATACAAC+AGG | 0.496202 | 3.4:+3087780 | MS.gene51519:CDS |
| TGTCTCTGCTGCTTGTATCA+TGG | 0.508900 | 3.4:+3090311 | MS.gene51519:CDS |
| TAAACCATGTCCATTTAATC+GGG | 0.509369 | 3.4:-3090238 | None:intergenic |
| CAGTACTCAAACAACCCAAC+AGG | 0.511199 | 3.4:-3091039 | None:intergenic |
| ATGATTGCTGAATTCAAGAA+TGG | 0.511956 | 3.4:+3090147 | MS.gene51519:CDS |
| AAGTTATTTGGTCCTAGTGT+TGG | 0.538875 | 3.4:+3088947 | MS.gene51519:CDS |
| TGCTTCTATCCCAAATATGA+TGG | 0.539501 | 3.4:-3089962 | None:intergenic |
| TTTGGGATAGAAGCAGCTAA+AGG | 0.540562 | 3.4:+3089970 | MS.gene51519:CDS |
| TTCATTGAACTCAGCGACAA+AGG | 0.544655 | 3.4:-3091068 | None:intergenic |
| GGTCAAGGTAAAGAATCGTT+TGG | 0.544923 | 3.4:-3088985 | None:intergenic |
| TGCTTGAACTCAGTGTTACT+GGG | 0.546484 | 3.4:+3089278 | MS.gene51519:CDS |
| GGACATGGTTTAGGATCAAG+AGG | 0.558631 | 3.4:+3090249 | MS.gene51519:CDS |
| TCGAAAGACCAAGGCAAAGG+TGG | 0.563466 | 3.4:+3090044 | MS.gene51519:CDS |
| TTGTTGGACCTCTTGGTGTG+TGG | 0.564817 | 3.4:+3090199 | MS.gene51519:CDS |
| GGTGTTAACAAGATATACTC+TGG | 0.565128 | 3.4:+3088922 | MS.gene51519:intron |
| GTATAAACATATGCTCTCCA+AGG | 0.565816 | 3.4:-3091109 | None:intergenic |
| TAGAGACCATATTAGAAGGA+AGG | 0.567138 | 3.4:-3089006 | None:intergenic |
| CTAGTCACATGACCAACACT+AGG | 0.571154 | 3.4:-3088959 | None:intergenic |
| TCTTTCAATGCTTAAAAGAG+GGG | 0.580875 | 3.4:-3087755 | None:intergenic |
| AAGACCAAGGCAAAGGTGGA+AGG | 0.581372 | 3.4:+3090048 | MS.gene51519:CDS |
| TTATCCCGATTAAATGGACA+TGG | 0.592003 | 3.4:+3090234 | MS.gene51519:CDS |
| ATTGAACTCAGCGACAAAGG+TGG | 0.624325 | 3.4:-3091065 | None:intergenic |
| CCATATTAGAAGGAAGGTCA+AGG | 0.628711 | 3.4:-3089000 | None:intergenic |
| GGGAGTCTAACAACGTTCAG+CGG | 0.633659 | 3.4:+3089241 | MS.gene51519:CDS |
| CATCTAATCCACACACCAAG+AGG | 0.633898 | 3.4:-3090207 | None:intergenic |
| TATAAACATATGCTCTCCAA+GGG | 0.634225 | 3.4:-3091108 | None:intergenic |
| TAGTCGAAAGACCAAGGCAA+AGG | 0.635977 | 3.4:+3090041 | MS.gene51519:CDS |
| TAAAACTAGTCGAAAGACCA+AGG | 0.644537 | 3.4:+3090035 | MS.gene51519:CDS |
| AAAACACTTAGCAGTTATGG+TGG | 0.644675 | 3.4:+3090077 | MS.gene51519:CDS |
| AAGCAGCTAAAGGTTTCAAG+TGG | 0.646093 | 3.4:+3089980 | MS.gene51519:CDS |
| ATGGTGAAAATGCTTATCTG+TGG | 0.657260 | 3.4:+3090166 | MS.gene51519:CDS |
| AAACATATGCTCTCCAAGGG+TGG | 0.662662 | 3.4:-3091105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAAAAAAAACTTAAAA+AGG | + | chr3.4:3090753-3090772 | MS.gene51519:intron | 10.0% |
| !! | TTTAAATTTCAATTATTGTA+CGG | + | chr3.4:3088609-3088628 | MS.gene51519:intron | 10.0% |
| !!! | ATAAAATTTTGATATACTAT+TGG | - | chr3.4:3087973-3087992 | None:intergenic | 10.0% |
| !! | AAACAATAATCAAGTATTAT+AGG | + | chr3.4:3089813-3089832 | MS.gene51519:intron | 15.0% |
| !! | AACAATAATCAAGTATTATA+GGG | + | chr3.4:3089814-3089833 | MS.gene51519:intron | 15.0% |
| !! | AGAAAAAAATTGTAAGTATT+TGG | - | chr3.4:3089094-3089113 | None:intergenic | 15.0% |
| !!! | ATTTTTATGAATATCTTTCT+AGG | + | chr3.4:3089120-3089139 | MS.gene51519:intron | 15.0% |
| !!! | GTAAACATTTTTATAGATAA+TGG | - | chr3.4:3090597-3090616 | None:intergenic | 15.0% |
| !!! | TTTTGTTTATATTCATGAAT+AGG | + | chr3.4:3090463-3090482 | MS.gene51519:intron | 15.0% |
| !! | AAACATGATAAAGTTTAAGT+TGG | - | chr3.4:3088395-3088414 | None:intergenic | 20.0% |
| !! | AACTTAAACTTTATCATGTT+TGG | + | chr3.4:3088394-3088413 | MS.gene51519:intron | 20.0% |
| !! | GAAACTTGAAATTAAGTTAA+AGG | - | chr3.4:3090539-3090558 | None:intergenic | 20.0% |
| !! | TCATCAAAAACATATATGAT+TGG | + | chr3.4:3087914-3087933 | MS.gene51519:intron | 20.0% |
| !! | TGCAATAAAAGATTATGTAA+TGG | + | chr3.4:3088475-3088494 | MS.gene51519:intron | 20.0% |
| !! | TTATAACATTGGTCATATAT+AGG | + | chr3.4:3088550-3088569 | MS.gene51519:intron | 20.0% |
| !! | TTTGTTCATACTTTATACAA+CGG | - | chr3.4:3088663-3088682 | None:intergenic | 20.0% |
| !!! | AAGATTCAAAACATTTTTGT+TGG | + | chr3.4:3087826-3087845 | MS.gene51519:intron | 20.0% |
| !!! | ATATGTTTTTGATGATTTGA+CGG | - | chr3.4:3087909-3087928 | None:intergenic | 20.0% |
| !!! | TACTGTTCAATAACTTTTTA+CGG | + | chr3.4:3089522-3089541 | MS.gene51519:intron | 20.0% |
| !!! | TCATTTTCTGTTTATAACAT+TGG | + | chr3.4:3088539-3088558 | MS.gene51519:intron | 20.0% |
| ! | AAATTGTAAGTATTTGGTCA+AGG | - | chr3.4:3089088-3089107 | None:intergenic | 25.0% |
| ! | ATAGGTAATGTTAACAAGTA+AGG | + | chr3.4:3089331-3089350 | MS.gene51519:intron | 25.0% |
| ! | ATGGATGAATTATAAATTCC+AGG | + | chr3.4:3091196-3091215 | MS.gene51519:intron | 25.0% |
| ! | GTCTCAATTACATAATACAT+CGG | + | chr3.4:3088443-3088462 | MS.gene51519:intron | 25.0% |
| ! | GTGAGATATATAAGAAATGA+TGG | - | chr3.4:3090959-3090978 | None:intergenic | 25.0% |
| ! | TAAAGAATTGCCAAAGTTAT+TGG | + | chr3.4:3088066-3088085 | MS.gene51519:CDS | 25.0% |
| ! | TACATGATCATTGAATGATA+TGG | + | chr3.4:3090664-3090683 | MS.gene51519:intron | 25.0% |
| ! | TGAAATTAAGTTAAAGGACT+CGG | - | chr3.4:3090533-3090552 | None:intergenic | 25.0% |
| ! | TGAGATTAAACGTTGTTTAA+TGG | - | chr3.4:3089660-3089679 | None:intergenic | 25.0% |
| ! | TGATTATCTTCATCATCTTT+AGG | + | chr3.4:3088578-3088597 | MS.gene51519:intron | 25.0% |
| ! | TGCTTCATATTTGATTCATT+TGG | + | chr3.4:3088093-3088112 | MS.gene51519:CDS | 25.0% |
| ! | TTATGAATATCTTTCTAGGT+TGG | + | chr3.4:3089124-3089143 | MS.gene51519:intron | 25.0% |
| ! | TTTATATGAGAACTAGAGAA+GGG | + | chr3.4:3089593-3089612 | MS.gene51519:intron | 25.0% |
| !! | ATATGTTCCTCATTCTTTTT+AGG | + | chr3.4:3091142-3091161 | MS.gene51519:intron | 25.0% |
| !! | ATTTTATCATTGAAGTTCAG+AGG | - | chr3.4:3088151-3088170 | None:intergenic | 25.0% |
| !! | GTTGACGTTTTTAAACATAA+AGG | + | chr3.4:3090789-3090808 | MS.gene51519:intron | 25.0% |
| !! | TATGTTCCTCATTCTTTTTA+GGG | + | chr3.4:3091143-3091162 | MS.gene51519:intron | 25.0% |
| !! | TTTTATATGAGAACTAGAGA+AGG | + | chr3.4:3089592-3089611 | MS.gene51519:intron | 25.0% |
| !!! | ACTTAATTTCAAGTTTCAAG+AGG | + | chr3.4:3090542-3090561 | MS.gene51519:intron | 25.0% |
| !!! | ATAAGTATGTTTTAGTGGTA+TGG | + | chr3.4:3089358-3089377 | MS.gene51519:intron | 25.0% |
| !!! | ATTTTAAAAGGCATACAGTT+TGG | + | chr3.4:3091016-3091035 | MS.gene51519:CDS | 25.0% |
| !!! | GATTGTGACACTATTTTAAA+AGG | + | chr3.4:3091004-3091023 | MS.gene51519:CDS | 25.0% |
| !!! | GTTTGATAAGTATGTTTTAG+TGG | + | chr3.4:3089353-3089372 | MS.gene51519:intron | 25.0% |
| !!! | TATAGTAAGTTTTGTAACAC+AGG | + | chr3.4:3089763-3089782 | MS.gene51519:intron | 25.0% |
| !!! | TGTTGCACTCATTTATTTTT+GGG | + | chr3.4:3088799-3088818 | MS.gene51519:intron | 25.0% |
| !!! | TTGTTGCACTCATTTATTTT+TGG | + | chr3.4:3088798-3088817 | MS.gene51519:intron | 25.0% |
| !!! | TTTTTGTTTTGCTATAATGC+AGG | + | chr3.4:3088901-3088920 | MS.gene51519:intron | 25.0% |
| AAAGTAGAGACCATATTAGA+AGG | - | chr3.4:3089013-3089032 | None:intergenic | 30.0% | |
| AACTTTGGCAATTCTTTACT+AGG | - | chr3.4:3088064-3088083 | None:intergenic | 30.0% | |
| AATTCATCCATTCTCCAAAT+AGG | - | chr3.4:3091187-3091206 | None:intergenic | 30.0% | |
| ACACACATACATATATGAGA+AGG | - | chr3.4:3089853-3089872 | None:intergenic | 30.0% | |
| ACATGAACATGAGATTAAGA+AGG | - | chr3.4:3090393-3090412 | None:intergenic | 30.0% | |
| ATATCTCACTTGTTTGATGT+AGG | + | chr3.4:3090970-3090989 | MS.gene51519:intron | 30.0% | |
| ATATGAGTACTATAGTGAAC+TGG | - | chr3.4:3088324-3088343 | None:intergenic | 30.0% | |
| ATGATTGCTGAATTCAAGAA+TGG | + | chr3.4:3090147-3090166 | MS.gene51519:CDS | 30.0% | |
| CAAAAAACACTTAGCAGTTA+TGG | + | chr3.4:3090074-3090093 | MS.gene51519:CDS | 30.0% | |
| CTAAACCATGTCCATTTAAT+CGG | - | chr3.4:3090242-3090261 | None:intergenic | 30.0% | |
| CTCTTTCAATGCTTAAAAGA+GGG | - | chr3.4:3087759-3087778 | None:intergenic | 30.0% | |
| GTAATGGTCAAATGGAAATA+AGG | - | chr3.4:3088203-3088222 | None:intergenic | 30.0% | |
| GTGACAGTTTATTTACTTGA+AGG | + | chr3.4:3091242-3091261 | MS.gene51519:CDS | 30.0% | |
| TAAAATAGTGTCACAATCTC+TGG | - | chr3.4:3091002-3091021 | None:intergenic | 30.0% | |
| TAAACCATGTCCATTTAATC+GGG | - | chr3.4:3090241-3090260 | None:intergenic | 30.0% | |
| TAAGATCCCTAAAAAGAATG+AGG | - | chr3.4:3091152-3091171 | None:intergenic | 30.0% | |
| TAATATACTGTGTGCCTATT+TGG | + | chr3.4:3091170-3091189 | MS.gene51519:intron | 30.0% | |
| TATAAACATATGCTCTCCAA+GGG | - | chr3.4:3091111-3091130 | None:intergenic | 30.0% | |
| TATAATGCACTTAGGAATTC+TGG | + | chr3.4:3088825-3088844 | MS.gene51519:intron | 30.0% | |
| TATACTCTGGACAAGTTATT+TGG | + | chr3.4:3088935-3088954 | MS.gene51519:CDS | 30.0% | |
| TCTCTTTCAATGCTTAAAAG+AGG | - | chr3.4:3087760-3087779 | None:intergenic | 30.0% | |
| TCTTTCAATGCTTAAAAGAG+GGG | - | chr3.4:3087758-3087777 | None:intergenic | 30.0% | |
| TTCCTAAGGTTGAAAAATAC+AGG | - | chr3.4:3088705-3088724 | None:intergenic | 30.0% | |
| TTTGTTGACAAAACTGCAAT+AGG | - | chr3.4:3090859-3090878 | None:intergenic | 30.0% | |
| ! | ACTATTTTCAGTTCATGTTG+TGG | + | chr3.4:3088244-3088263 | MS.gene51519:intron | 30.0% |
| ! | GAAGCATTATCCAATAACTT+TGG | - | chr3.4:3088079-3088098 | None:intergenic | 30.0% |
| ! | TATCCCAAATATGATGGAAA+AGG | - | chr3.4:3089959-3089978 | None:intergenic | 30.0% |
| ! | TCTGGTCATACTTTTATACT+AGG | + | chr3.4:3088843-3088862 | MS.gene51519:intron | 30.0% |
| ! | TGAATAATTGGAGTTTTGCA+GGG | + | chr3.4:3089920-3089939 | MS.gene51519:intron | 30.0% |
| ! | TGTGAGTAGTTAATCGTTTT+TGG | + | chr3.4:3088172-3088191 | MS.gene51519:intron | 30.0% |
| ! | TTGAATAATTGGAGTTTTGC+AGG | + | chr3.4:3089919-3089938 | MS.gene51519:intron | 30.0% |
| ! | TTGCCTTTTCCATCATATTT+GGG | + | chr3.4:3089953-3089972 | MS.gene51519:CDS | 30.0% |
| ! | TTTTGATCTGCTATGGTAAA+TGG | + | chr3.4:3088002-3088021 | MS.gene51519:intron | 30.0% |
| !! | TTGATTCATTTGGCTGTTTT+CGG | + | chr3.4:3088103-3088122 | MS.gene51519:CDS | 30.0% |
| !!! | TACTCTTTTTTGATCTGCTA+TGG | + | chr3.4:3087995-3088014 | MS.gene51519:intron | 30.0% |
| AAAACACTTAGCAGTTATGG+TGG | + | chr3.4:3090077-3090096 | MS.gene51519:CDS | 35.0% | |
| AAATTATCGCAGTCTATGCA+GGG | + | chr3.4:3089875-3089894 | MS.gene51519:intron | 35.0% | |
| AAGTTAAAGGACTCGGAATT+TGG | - | chr3.4:3090526-3090545 | None:intergenic | 35.0% | |
| AAGTTATTTGGTCCTAGTGT+TGG | + | chr3.4:3088947-3088966 | MS.gene51519:CDS | 35.0% | |
| ACCATTACTAGTTGGAGTTA+CGG | + | chr3.4:3088215-3088234 | MS.gene51519:intron | 35.0% | |
| AGTATAACTGTGATGTTGAG+TGG | - | chr3.4:3090706-3090725 | None:intergenic | 35.0% | |
| ATGGTGAAAATGCTTATCTG+TGG | + | chr3.4:3090166-3090185 | MS.gene51519:CDS | 35.0% | |
| CACGACAATATTACCTTCTA+TGG | - | chr3.4:3091225-3091244 | None:intergenic | 35.0% | |
| CAGAGAAACTTTCAATCCAA+CGG | - | chr3.4:3089569-3089588 | None:intergenic | 35.0% | |
| CGATTAAATGGACATGGTTT+AGG | + | chr3.4:3090240-3090259 | MS.gene51519:CDS | 35.0% | |
| GAACTTTCATAGCTATAAGC+TGG | + | chr3.4:3090419-3090438 | MS.gene51519:intron | 35.0% | |
| GAGAAGGGATCAAATTACAT+TGG | + | chr3.4:3089608-3089627 | MS.gene51519:intron | 35.0% | |
| GGTGTTAACAAGATATACTC+TGG | + | chr3.4:3088922-3088941 | MS.gene51519:intron | 35.0% | |
| GTATAAACATATGCTCTCCA+AGG | - | chr3.4:3091112-3091131 | None:intergenic | 35.0% | |
| GTGAAGTGAAAGAGTCATAA+CGG | - | chr3.4:3089404-3089423 | None:intergenic | 35.0% | |
| TAAAACTAGTCGAAAGACCA+AGG | + | chr3.4:3090035-3090054 | MS.gene51519:CDS | 35.0% | |
| TAAATTATCGCAGTCTATGC+AGG | + | chr3.4:3089874-3089893 | MS.gene51519:intron | 35.0% | |
| TAGAGACCATATTAGAAGGA+AGG | - | chr3.4:3089009-3089028 | None:intergenic | 35.0% | |
| TATATGACAAAACTCACCGT+TGG | + | chr3.4:3089550-3089569 | MS.gene51519:intron | 35.0% | |
| TCAAGGAAACAAAGTAGAGA+GGG | - | chr3.4:3089071-3089090 | None:intergenic | 35.0% | |
| TCCAACTAGTAATGGTCAAA+TGG | - | chr3.4:3088211-3088230 | None:intergenic | 35.0% | |
| TCCATTTGACCATTACTAGT+TGG | + | chr3.4:3088207-3088226 | MS.gene51519:intron | 35.0% | |
| TGCTTCTATCCCAAATATGA+TGG | - | chr3.4:3089965-3089984 | None:intergenic | 35.0% | |
| TTATCCCGATTAAATGGACA+TGG | + | chr3.4:3090234-3090253 | MS.gene51519:CDS | 35.0% | |
| TTGGGCAATATAATGCACTT+AGG | + | chr3.4:3088817-3088836 | MS.gene51519:intron | 35.0% | |
| TTGTTGAATTGGATGCGATT+TGG | + | chr3.4:3090273-3090292 | MS.gene51519:CDS | 35.0% | |
| ! | AGATTCTGAAGACATACAAC+AGG | + | chr3.4:3087780-3087799 | MS.gene51519:CDS | 35.0% |
| ! | AGGACGAGCTTTTGAATAAT+TGG | + | chr3.4:3089908-3089927 | MS.gene51519:intron | 35.0% |
| ! | GTTGCCTTTTCCATCATATT+TGG | + | chr3.4:3089952-3089971 | MS.gene51519:CDS | 35.0% |
| ! | GTTTCAAGTGGCTACTTATA+AGG | + | chr3.4:3089992-3090011 | MS.gene51519:CDS | 35.0% |
| ! | TGGCTTTTATCCCGATTAAA+TGG | + | chr3.4:3090228-3090247 | MS.gene51519:CDS | 35.0% |
| !! | AGTGGACTAAGAATGAAAGT+TGG | - | chr3.4:3090629-3090648 | None:intergenic | 35.0% |
| !! | CTTCATCATCTTTAGGATCT+AGG | + | chr3.4:3088585-3088604 | MS.gene51519:intron | 35.0% |
| !! | GATCAAGAGGTTTGTTGAAT+TGG | + | chr3.4:3090262-3090281 | MS.gene51519:CDS | 35.0% |
| !! | GATTGGTTGTGATTTGTTGA+CGG | + | chr3.4:3087931-3087950 | MS.gene51519:intron | 35.0% |
| !! | GTCCTGTATTTTTCAACCTT+AGG | + | chr3.4:3088700-3088719 | MS.gene51519:intron | 35.0% |
| !!! | CTGATTTTAGGCTTGTTATG+GGG | + | chr3.4:3090108-3090127 | MS.gene51519:CDS | 35.0% |
| !!! | GCTGATTTTAGGCTTGTTAT+GGG | + | chr3.4:3090107-3090126 | MS.gene51519:CDS | 35.0% |
| !!! | GTGGTGTTTTTGCTGATTTT+AGG | + | chr3.4:3090096-3090115 | MS.gene51519:CDS | 35.0% |
| !!! | TAGGTTGGTTCTTTTCTGAT+GGG | + | chr3.4:3089139-3089158 | MS.gene51519:intron | 35.0% |
| !!! | TAGTTTTGTGCAGATTCCTA+AGG | - | chr3.4:3088719-3088738 | None:intergenic | 35.0% |
| !!! | TGCTGATTTTAGGCTTGTTA+TGG | + | chr3.4:3090106-3090125 | MS.gene51519:CDS | 35.0% |
| AAATTCCAGGTAGCCATAGA+AGG | + | chr3.4:3091209-3091228 | MS.gene51519:intron | 40.0% | |
| AAGCAGCTAAAGGTTTCAAG+TGG | + | chr3.4:3089980-3089999 | MS.gene51519:CDS | 40.0% | |
| AATTATCGCAGTCTATGCAG+GGG | + | chr3.4:3089876-3089895 | MS.gene51519:intron | 40.0% | |
| ACCGTAACTCCAACTAGTAA+TGG | - | chr3.4:3088219-3088238 | None:intergenic | 40.0% | |
| ATCAAATGTGTCCAAGCATC+TGG | + | chr3.4:3089192-3089211 | MS.gene51519:CDS | 40.0% | |
| ATGCTTGAACTCAGTGTTAC+TGG | + | chr3.4:3089277-3089296 | MS.gene51519:CDS | 40.0% | |
| CAAGGAAACAAAGTAGAGAG+GGG | - | chr3.4:3089070-3089089 | None:intergenic | 40.0% | |
| CACTGACAACTGGTTACTTA+GGG | + | chr3.4:3089221-3089240 | MS.gene51519:CDS | 40.0% | |
| CCATATTAGAAGGAAGGTCA+AGG | - | chr3.4:3089003-3089022 | None:intergenic | 40.0% | |
| CCTTGACCTTCCTTCTAATA+TGG | + | chr3.4:3089000-3089019 | MS.gene51519:CDS | 40.0% | |
| GGAAAAAATGCAACTACTGC+AGG | - | chr3.4:3088642-3088661 | None:intergenic | 40.0% | |
| GGTCAAGGTAAAGAATCGTT+TGG | - | chr3.4:3088988-3089007 | None:intergenic | 40.0% | |
| GTACACAGTTGTAACAGAAG+TGG | - | chr3.4:3090647-3090666 | None:intergenic | 40.0% | |
| GTCAAGGAAACAAAGTAGAG+AGG | - | chr3.4:3089072-3089091 | None:intergenic | 40.0% | |
| TATTACCTTCTATGGCTACC+TGG | - | chr3.4:3091217-3091236 | None:intergenic | 40.0% | |
| TCATCTGACTCTTGCTACTA+GGG | + | chr3.4:3090491-3090510 | MS.gene51519:intron | 40.0% | |
| TGACAATTGTCTTCAGTTGC+AGG | + | chr3.4:3088036-3088055 | MS.gene51519:intron | 40.0% | |
| TTCATTGAACTCAGCGACAA+AGG | - | chr3.4:3091071-3091090 | None:intergenic | 40.0% | |
| ! | AACTCAGTGTTACTGGGAAT+TGG | + | chr3.4:3089284-3089303 | MS.gene51519:CDS | 40.0% |
| ! | AATTGGCTCTTTGTTGTGCT+TGG | + | chr3.4:3089301-3089320 | MS.gene51519:CDS | 40.0% |
| ! | GTTGTGCTTGGCTTTCTAAT+AGG | + | chr3.4:3089313-3089332 | MS.gene51519:CDS | 40.0% |
| ! | TCTTTTCTGATGGGATGGTT+TGG | + | chr3.4:3089148-3089167 | MS.gene51519:CDS | 40.0% |
| ! | TGCTTGAACTCAGTGTTACT+GGG | + | chr3.4:3089278-3089297 | MS.gene51519:CDS | 40.0% |
| ! | TTTGGGATAGAAGCAGCTAA+AGG | + | chr3.4:3089970-3089989 | MS.gene51519:CDS | 40.0% |
| !! | TTGGCTGTTTTCGGTATTCT+CGG | + | chr3.4:3088112-3088131 | MS.gene51519:CDS | 40.0% |
| !! | TTGGTTCTTTTCTGATGGGA+TGG | + | chr3.4:3089143-3089162 | MS.gene51519:CDS | 40.0% |
| !!! | CTAGGTTGGTTCTTTTCTGA+TGG | + | chr3.4:3089138-3089157 | MS.gene51519:intron | 40.0% |
| AAACATATGCTCTCCAAGGG+TGG | - | chr3.4:3091108-3091127 | None:intergenic | 45.0% | |
| ACAAAGTAGAGAGGGGAAGA+TGG | - | chr3.4:3089063-3089082 | None:intergenic | 45.0% | |
| ATAGAGAGAGAGAGAGAGAG+AGG | + | chr3.4:3089463-3089482 | MS.gene51519:intron | 45.0% | |
| ATCTGACTCTTGCTACTAGG+GGG | + | chr3.4:3090493-3090512 | MS.gene51519:intron | 45.0% | |
| ATTGAACTCAGCGACAAAGG+TGG | - | chr3.4:3091068-3091087 | None:intergenic | 45.0% | |
| CAGTACTCAAACAACCCAAC+AGG | - | chr3.4:3091042-3091061 | None:intergenic | 45.0% | |
| CATCTAATCCACACACCAAG+AGG | - | chr3.4:3090210-3090229 | None:intergenic | 45.0% | |
| CATCTGACTCTTGCTACTAG+GGG | + | chr3.4:3090492-3090511 | MS.gene51519:intron | 45.0% | |
| CTAGTCACATGACCAACACT+AGG | - | chr3.4:3088962-3088981 | None:intergenic | 45.0% | |
| CTCATCTGACTCTTGCTACT+AGG | + | chr3.4:3090490-3090509 | MS.gene51519:intron | 45.0% | |
| CTGTGTGCCTATTTGGAGAA+TGG | + | chr3.4:3091177-3091196 | MS.gene51519:intron | 45.0% | |
| TAGTCGAAAGACCAAGGCAA+AGG | + | chr3.4:3090041-3090060 | MS.gene51519:CDS | 45.0% | |
| ! | GCACTGACAACTGGTTACTT+AGG | + | chr3.4:3089220-3089239 | MS.gene51519:CDS | 45.0% |
| ! | GGACATGGTTTAGGATCAAG+AGG | + | chr3.4:3090249-3090268 | MS.gene51519:CDS | 45.0% |
| ! | TGTCTCTGCTGCTTGTATCA+TGG | + | chr3.4:3090311-3090330 | MS.gene51519:CDS | 45.0% |
| !! | CTCTTGGTGTGTGGATTAGA+TGG | + | chr3.4:3090208-3090227 | MS.gene51519:CDS | 45.0% |
| !! | GGCTTGTTATGGGGTATTAG+TGG | + | chr3.4:3090117-3090136 | MS.gene51519:CDS | 45.0% |
| !! | TGGCTGTTTTCGGTATTCTC+GGG | + | chr3.4:3088113-3088132 | MS.gene51519:CDS | 45.0% |
| AAGACCAAGGCAAAGGTGGA+AGG | + | chr3.4:3090048-3090067 | MS.gene51519:CDS | 50.0% | |
| AGGCATACAGTTTGGCCTGT+TGG | + | chr3.4:3091024-3091043 | MS.gene51519:CDS | 50.0% | |
| CTATGCAGGGGCGAATTGAT+AGG | + | chr3.4:3089888-3089907 | MS.gene51519:intron | 50.0% | |
| CTGTGGATCGCTTGCATTGT+TGG | + | chr3.4:3090183-3090202 | MS.gene51519:CDS | 50.0% | |
| GCTTGCATTGTTGGACCTCT+TGG | + | chr3.4:3090192-3090211 | MS.gene51519:CDS | 50.0% | |
| GGCATACAGTTTGGCCTGTT+GGG | + | chr3.4:3091025-3091044 | MS.gene51519:CDS | 50.0% | |
| GGGAGTCTAACAACGTTCAG+CGG | + | chr3.4:3089241-3089260 | MS.gene51519:CDS | 50.0% | |
| TCGAAAGACCAAGGCAAAGG+TGG | + | chr3.4:3090044-3090063 | MS.gene51519:CDS | 50.0% | |
| ! | TTGTTGGACCTCTTGGTGTG+TGG | + | chr3.4:3090199-3090218 | MS.gene51519:CDS | 50.0% |
| !! | GGCTGTTTTCGGTATTCTCG+GGG | + | chr3.4:3088114-3088133 | MS.gene51519:CDS | 50.0% |
| AGAGAGGGGAAGATGGTGTG+AGG | - | chr3.4:3089056-3089075 | None:intergenic | 55.0% | |
| ATGGTGTGAGGGAAGGAGTG+AGG | - | chr3.4:3089044-3089063 | None:intergenic | 55.0% | |
| CAGTGCAACAGCCAGATGCT+TGG | - | chr3.4:3089206-3089225 | None:intergenic | 55.0% | |
| GAGAGGGGAAGATGGTGTGA+GGG | - | chr3.4:3089055-3089074 | None:intergenic | 55.0% | |
| GATGCCTTCCACCTTTGCCT+TGG | - | chr3.4:3090055-3090074 | None:intergenic | 55.0% | |
| GTCTAACAACGTTCAGCGGC+TGG | + | chr3.4:3089245-3089264 | MS.gene51519:CDS | 55.0% | |
| GTGAGGGAAGGAGTGAGGAA+GGG | - | chr3.4:3089039-3089058 | None:intergenic | 55.0% | |
| TGAGAGAAAGCGACCACCCT+TGG | + | chr3.4:3091092-3091111 | MS.gene51519:CDS | 55.0% | |
| TGTGAGGGAAGGAGTGAGGA+AGG | - | chr3.4:3089040-3089059 | None:intergenic | 55.0% | |
| ! | CTGGCTGTTGCACTGACAAC+TGG | + | chr3.4:3089211-3089230 | MS.gene51519:CDS | 55.0% |
| GGGGAAGATGGTGTGAGGGA+AGG | - | chr3.4:3089051-3089070 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 3087751 | 3091313 | 3087751 | ID=MS.gene51519 |
| chr3.4 | mRNA | 3087751 | 3091313 | 3087751 | ID=MS.gene51519.t1;Parent=MS.gene51519 |
| chr3.4 | exon | 3087751 | 3087801 | 3087751 | ID=MS.gene51519.t1.exon1;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3087751 | 3087801 | 3087751 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| chr3.4 | exon | 3088058 | 3088135 | 3088058 | ID=MS.gene51519.t1.exon2;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3088058 | 3088135 | 3088058 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| chr3.4 | exon | 3088923 | 3089021 | 3088923 | ID=MS.gene51519.t1.exon3;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3088923 | 3089021 | 3088923 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| chr3.4 | exon | 3089142 | 3089334 | 3089142 | ID=MS.gene51519.t1.exon4;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3089142 | 3089334 | 3089142 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| chr3.4 | exon | 3089941 | 3090359 | 3089941 | ID=MS.gene51519.t1.exon5;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3089941 | 3090359 | 3089941 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| chr3.4 | exon | 3090992 | 3091123 | 3090992 | ID=MS.gene51519.t1.exon6;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3090992 | 3091123 | 3090992 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| chr3.4 | exon | 3091218 | 3091313 | 3091218 | ID=MS.gene51519.t1.exon7;Parent=MS.gene51519.t1 |
| chr3.4 | CDS | 3091218 | 3091313 | 3091218 | ID=cds.MS.gene51519.t1;Parent=MS.gene51519.t1 |
| Gene Sequence |
| Protein sequence |
