AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76523


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76523.t1 MTR_2g101400 96.542 347 12 0 1 347 1 347 0.0 700
MS.gene76523.t1 MTR_7g086110 67.081 322 105 1 26 346 4 325 1.02e-164 462
MS.gene76523.t1 MTR_2g067760 62.500 328 121 2 17 344 21 346 2.49e-156 442
MS.gene76523.t1 MTR_2g451450 58.086 303 126 1 27 329 30 331 2.01e-127 368
MS.gene76523.t1 MTR_2g451450 62.882 229 84 1 113 341 1 228 1.50e-104 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76523.t1 AT3G12740 64.024 328 116 2 17 344 23 348 1.29e-156 443
MS.gene76523.t1 AT1G54320 62.805 328 120 2 17 344 22 347 4.71e-154 437
MS.gene76523.t1 AT1G79450 62.538 331 122 2 17 347 22 350 1.27e-152 433
MS.gene76523.t1 AT1G16360 62.006 329 123 2 16 344 21 347 5.61e-152 431
MS.gene76523.t1 AT1G16360 61.755 319 120 2 26 344 17 333 2.99e-146 416
MS.gene76523.t1 AT1G16360 60.855 304 117 2 26 329 17 318 5.90e-136 390
MS.gene76523.t1 AT1G79450 61.649 279 105 2 69 347 7 283 2.99e-124 358
MS.gene76523.t1 AT5G46150 52.632 342 157 3 1 341 1 338 2.01e-119 348
MS.gene76523.t1 AT5G46150 52.632 342 157 3 1 341 1 338 2.01e-119 348
MS.gene76523.t1 AT5G46150 52.727 330 154 2 1 329 1 329 2.80e-116 340
MS.gene76523.t1 AT1G16360 55.502 209 91 2 26 234 17 223 1.11e-79 243
MS.gene76523.t1 AT1G16360 55.502 209 91 2 26 234 17 223 1.11e-79 243
MS.gene76523.t1 AT5G46150 49.145 234 117 2 1 233 1 233 3.24e-74 229

Find 58 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATCATCTTTATCCCTAT+TGG 0.278510 2.3:-2661365 MS.gene76523:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2.3:-2659781 MS.gene76523:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 2.3:-2661386 MS.gene76523:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2.3:-2660368 MS.gene76523:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2.3:+2661638 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2.3:+2660475 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 2.3:+2661350 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2.3:-2660011 MS.gene76523:CDS
GGGATTGCATACCTTGTTGT+TGG 0.410908 2.3:-2659808 MS.gene76523:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2.3:-2660365 MS.gene76523:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2.3:-2659970 MS.gene76523:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2.3:-2661132 MS.gene76523:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2.3:-2659846 MS.gene76523:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2.3:+2660521 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2.3:-2660514 MS.gene76523:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2.3:-2659889 MS.gene76523:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2.3:+2661650 None:intergenic
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2.3:-2659805 MS.gene76523:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2.3:+2661138 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2.3:-2659850 MS.gene76523:CDS
GGGATCCATCCTACTTATCA+TGG 0.488506 2.3:-2659438 MS.gene76523:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 2.3:-2659424 MS.gene76523:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2.3:+2662017 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 2.3:-2660607 MS.gene76523:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 2.3:+2660981 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 2.3:+2659433 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 2.3:+2659429 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2.3:-2659875 MS.gene76523:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2.3:+2661351 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 2.3:-2661639 MS.gene76523:intron
TGGTTCTATCAACTACAACT+TGG 0.538526 2.3:-2659855 MS.gene76523:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2.3:+2661119 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2.3:-2659969 MS.gene76523:CDS
GATATGACTTCATCAAAAGA+TGG 0.544518 2.3:-2662009 MS.gene76523:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 2.3:-2661640 MS.gene76523:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2.3:+2661626 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2.3:-2659847 MS.gene76523:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2.3:+2661180 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2.3:-2660546 MS.gene76523:CDS
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 2.3:-2660590 MS.gene76523:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 2.3:+2660512 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.580136 2.3:-2660025 MS.gene76523:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2.3:-2661644 MS.gene76523:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2.3:+2659777 None:intergenic
ATTACTATCAAAATCATCGC+CGG 0.596581 2.3:-2660970 MS.gene76523:intron
GATTCCAATTGCAGTAAATG+TGG 0.597750 2.3:+2661382 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2.3:-2659750 MS.gene76523:intron
CACAGCAAGAACTACCTGCA+TGG 0.603633 2.3:-2661664 MS.gene76523:CDS
TGTACTAACAATCCATTTGT+GGG 0.623733 2.3:+2661120 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 2.3:-2659423 MS.gene76523:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 2.3:+2659797 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2.3:+2661181 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 2.3:-2660589 MS.gene76523:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 2.3:-2660551 MS.gene76523:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2.3:+2660504 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2.3:-2660527 MS.gene76523:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2.3:-2659885 MS.gene76523:CDS
AAGTAGGATGGATCCCCGAG+AGG 0.733345 2.3:+2659445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGACAAAAATTATATTT+TGG + chr2.3:2659897-2659916 None:intergenic 10.0%
!! ACTAATTATTATTTCCATTT+AGG + chr2.3:2660373-2660392 None:intergenic 15.0%
!! ATTAAAATCTTGGAAAATTT+AGG - chr2.3:2659649-2659668 MS.gene76523:intron 15.0%
!! TTAAAATCTTGGAAAATTTA+GGG - chr2.3:2659650-2659669 MS.gene76523:intron 15.0%
!! TTTATGTTAGGAAATTAATA+TGG - chr2.3:2661871-2661890 MS.gene76523:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG - chr2.3:2660161-2660180 MS.gene76523:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG - chr2.3:2659900-2659919 MS.gene76523:CDS 15.0%
!! AACAAAAACAAATTTACTTG+AGG - chr2.3:2660698-2660717 MS.gene76523:intron 20.0%
!! AGTGACAAAAATTCTAAATT+TGG - chr2.3:2661013-2661032 MS.gene76523:CDS 20.0%
!! ATCATCCAAAATCATATTAA+AGG + chr2.3:2660776-2660795 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG + chr2.3:2661119-2661138 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG - chr2.3:2661859-2661878 MS.gene76523:intron 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG + chr2.3:2659972-2659991 None:intergenic 20.0%
!! TTAAACTGTTTATCCAAATA+GGG + chr2.3:2661118-2661137 None:intergenic 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG - chr2.3:2660486-2660505 MS.gene76523:CDS 20.0%
!!! ATTTTCCAAGATTTTAATAC+AGG + chr2.3:2659647-2659666 None:intergenic 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG - chr2.3:2660015-2660034 MS.gene76523:CDS 20.0%
!!! TTTGAAGTTTTCTTTGAATT+GGG + chr2.3:2659453-2659472 None:intergenic 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG - chr2.3:2660356-2660375 MS.gene76523:CDS 20.0%
! GCAAATTAAGACATACATTT+AGG + chr2.3:2659480-2659499 None:intergenic 25.0%
! TAATTAGTTGCAAACTTTAC+AGG - chr2.3:2660385-2660404 MS.gene76523:CDS 25.0%
! TGTAACATGTAAGTACTTAT+AGG + chr2.3:2661157-2661176 None:intergenic 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG - chr2.3:2661904-2661923 MS.gene76523:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG - chr2.3:2661046-2661065 MS.gene76523:intron 25.0%
!! TGATGCCTTTAATATGATTT+TGG - chr2.3:2660768-2660787 MS.gene76523:intron 25.0%
!! TTTGATAGTAATTATCAAGC+TGG + chr2.3:2660448-2660467 None:intergenic 25.0%
!!! ATTGTTTCAAGTTACATCAT+AGG + chr2.3:2659563-2659582 None:intergenic 25.0%
!!! CTTTGAAGTTTTCTTTGAAT+TGG + chr2.3:2659454-2659473 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG - chr2.3:2661714-2661733 MS.gene76523:intron 25.0%
AACAAAAAGAACATAGCATG+GGG - chr2.3:2660989-2661008 MS.gene76523:CDS 30.0%
ACATCATAGGAAGAAAAAGA+AGG + chr2.3:2659550-2659569 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG + chr2.3:2660310-2660329 None:intergenic 30.0%
ATTACTATCAAAATCATCGC+CGG - chr2.3:2660456-2660475 MS.gene76523:CDS 30.0%
ATTTCTGTTCCATGATAAGT+AGG + chr2.3:2662000-2662019 None:intergenic 30.0%
CAACAAAAAGAACATAGCAT+GGG - chr2.3:2660988-2661007 MS.gene76523:CDS 30.0%
CAACTTTCAGAAAACTGTAT+GGG - chr2.3:2661457-2661476 MS.gene76523:intron 30.0%
CATTTGTTCCTTGTGATTTA+CGG - chr2.3:2659619-2659638 MS.gene76523:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG + chr2.3:2659950-2659969 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG - chr2.3:2659417-2659436 MS.gene76523:CDS 30.0%
GCAAAATATTTCCTTTACCT+TGG + chr2.3:2661696-2661715 None:intergenic 30.0%
GTTGTCCATTGAAAATTTGT+AGG + chr2.3:2660954-2660973 None:intergenic 30.0%
TAAAGAAATACTAATGCAGG+TGG - chr2.3:2660184-2660203 MS.gene76523:intron 30.0%
TCAACAAAAAGAACATAGCA+TGG - chr2.3:2660987-2661006 MS.gene76523:CDS 30.0%
TGGTAAAGAAATACTAATGC+AGG - chr2.3:2660181-2660200 MS.gene76523:intron 30.0%
TGTACTAACAATCCATTTGT+GGG + chr2.3:2660309-2660328 None:intergenic 30.0%
TTTCCATAAGCTCTTTCAAA+CGG - chr2.3:2661284-2661303 MS.gene76523:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG - chr2.3:2659903-2659922 MS.gene76523:CDS 30.0%
! CAAATTTTCAATGGACAACA+AGG - chr2.3:2660955-2660974 MS.gene76523:intron 30.0%
! TGACACCTACAAATTTTCAA+TGG - chr2.3:2660946-2660965 MS.gene76523:intron 30.0%
! TTGAATACGCTCTTTTCTAT+TGG - chr2.3:2661823-2661842 MS.gene76523:intron 30.0%
! TTGCATCATTGTTTTCATCA+GGG - chr2.3:2660086-2660105 MS.gene76523:intron 30.0%
AACAAGAGGATCTGATTGTT+TGG - chr2.3:2661415-2661434 MS.gene76523:intron 35.0%
AACAATGATGCAAGACCAAT+AGG + chr2.3:2660079-2660098 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG + chr2.3:2660478-2660497 None:intergenic 35.0%
ACAATGATGCAAGACCAATA+GGG + chr2.3:2660078-2660097 None:intergenic 35.0%
AGCTGGTAGTAGATAAAAAC+AGG + chr2.3:2660431-2660450 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG - chr2.3:2660880-2660899 MS.gene76523:intron 35.0%
ATTGCCACATTTACTGCAAT+TGG - chr2.3:2660040-2660059 MS.gene76523:intron 35.0%
CCAACTTTCAGAAAACTGTA+TGG - chr2.3:2661456-2661475 MS.gene76523:intron 35.0%
CGTAAATCACAAGGAACAAA+TGG + chr2.3:2659621-2659640 None:intergenic 35.0%
CTATCAACTACAACTTGGAT+TGG - chr2.3:2661576-2661595 MS.gene76523:intron 35.0%
GATTCCAATTGCAGTAAATG+TGG + chr2.3:2660047-2660066 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG - chr2.3:2660061-2660080 MS.gene76523:intron 35.0%
GGTGGGAAAAATAGATTCTT+GGG - chr2.3:2661597-2661616 MS.gene76523:intron 35.0%
GTAGAAATGATAAGCAGTTG+TGG - chr2.3:2660819-2660838 MS.gene76523:intron 35.0%
GTGGGAAAAATAGATTCTTG+GGG - chr2.3:2661598-2661617 MS.gene76523:intron 35.0%
GTGTTATCAATTACGGATCA+CGG - chr2.3:2660493-2660512 MS.gene76523:CDS 35.0%
TACAACACATACGAGTTTCA+AGG - chr2.3:2661537-2661556 MS.gene76523:intron 35.0%
TATCATGGAACAGAAATCCA+GGG - chr2.3:2662003-2662022 MS.gene76523:CDS 35.0%
TGGTGGGAAAAATAGATTCT+TGG - chr2.3:2661596-2661615 MS.gene76523:intron 35.0%
TTATCATGGAACAGAAATCC+AGG - chr2.3:2662002-2662021 MS.gene76523:CDS 35.0%
TTATCCAAATAGGGACTTAC+AGG + chr2.3:2661109-2661128 None:intergenic 35.0%
! ATCATTGTTTTCATCAGGGA+AGG - chr2.3:2660090-2660109 MS.gene76523:intron 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG - chr2.3:2661049-2661068 MS.gene76523:intron 35.0%
! CTTGCATCATTGTTTTCATC+AGG - chr2.3:2660085-2660104 MS.gene76523:intron 35.0%
! GAAGTTTTCTTTGAATTGGG+AGG + chr2.3:2659450-2659469 None:intergenic 35.0%
! TGGTTCTATCAACTACAACT+TGG - chr2.3:2661571-2661590 MS.gene76523:intron 35.0%
! TTAGTGCATGTTTGAAACCA+CGG - chr2.3:2659836-2659855 MS.gene76523:CDS 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG + chr2.3:2660881-2660900 None:intergenic 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG + chr2.3:2661459-2661478 None:intergenic 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG + chr2.3:2661052-2661071 None:intergenic 35.0%
AACCAATTCTAACACCTGGA+TGG - chr2.3:2659786-2659805 MS.gene76523:CDS 40.0%
AACTGCATCTTTAGCATCAG+AGG + chr2.3:2660249-2660268 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG - chr2.3:2661541-2661560 MS.gene76523:intron 40.0%
ACCAATTCTAACACCTGGAT+GGG - chr2.3:2659787-2659806 MS.gene76523:CDS 40.0%
ACTGCATCTTTAGCATCAGA+GGG + chr2.3:2660248-2660267 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG - chr2.3:2660187-2660206 MS.gene76523:intron 40.0%
ATGTGATCAAGCCAAGGTAA+AGG - chr2.3:2661682-2661701 MS.gene76523:intron 40.0%
CATACCTGTAAGTCCCTATT+TGG - chr2.3:2661102-2661121 MS.gene76523:intron 40.0%
CGGAGCCTGTATTAAAATCT+TGG - chr2.3:2659639-2659658 MS.gene76523:intron 40.0%
CTATCCTTGTTCTGTGCTAT+AGG - chr2.3:2661645-2661664 MS.gene76523:CDS 40.0%
CTGTTCCATGATAAGTAGGA+TGG + chr2.3:2661996-2662015 None:intergenic 40.0%
GAATCCTATAGCACAGAACA+AGG + chr2.3:2661652-2661671 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG - chr2.3:2660875-2660894 MS.gene76523:intron 40.0%
GTTGCATATTATACCCATCC+AGG + chr2.3:2659803-2659822 None:intergenic 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG - chr2.3:2661551-2661570 MS.gene76523:intron 40.0%
TCATTGAAAATCGTGCTGTG+TGG + chr2.3:2660678-2660697 None:intergenic 40.0%
TGAACATACTCCATGCAATG+AGG + chr2.3:2660925-2660944 None:intergenic 40.0%
TGACCGTTTGAAAGAGCTTA+TGG + chr2.3:2661290-2661309 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG - chr2.3:2659782-2659801 MS.gene76523:CDS 40.0%
TTCTGTATGTGATCAAGCCA+AGG - chr2.3:2661676-2661695 MS.gene76523:CDS 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG - chr2.3:2661058-2661077 MS.gene76523:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG - chr2.3:2659657-2659676 MS.gene76523:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG + chr2.3:2659779-2659798 None:intergenic 40.0%
! TCAACTACAACTTGGATTGG+TGG - chr2.3:2661579-2661598 MS.gene76523:intron 40.0%
! TTTTGTCTACTGGATCACAG+TGG + chr2.3:2660871-2660890 None:intergenic 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG - chr2.3:2661621-2661640 MS.gene76523:intron 40.0%
!! CAACTACAACTTGGATTGGT+GGG - chr2.3:2661580-2661599 MS.gene76523:intron 40.0%
AAGGAGCCAATTGTTCCTTG+TGG - chr2.3:2660899-2660918 MS.gene76523:intron 45.0%
ACAAGACTTGCACCCACAAA+TGG - chr2.3:2660294-2660313 MS.gene76523:intron 45.0%
ACCCATCCAGGTGTTAGAAT+TGG + chr2.3:2659791-2659810 None:intergenic 45.0%
AGGATAGTCCACCAACAACA+AGG + chr2.3:2661632-2661651 None:intergenic 45.0%
ATGAGGCCACAAGGAACAAT+TGG + chr2.3:2660908-2660927 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG - chr2.3:2661401-2661420 MS.gene76523:intron 45.0%
GGGATCCATCCTACTTATCA+TGG - chr2.3:2661988-2662007 MS.gene76523:CDS 45.0%
TACAGGCTCCGTAAATCACA+AGG + chr2.3:2659630-2659649 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG + chr2.3:2659856-2659875 None:intergenic 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG - chr2.3:2660837-2660856 MS.gene76523:intron 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG - chr2.3:2660836-2660855 MS.gene76523:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG - chr2.3:2661618-2661637 MS.gene76523:intron 45.0%
! TGCTCTTTTTGCAGACCTCT+CGG - chr2.3:2661966-2661985 MS.gene76523:CDS 45.0%
!!! TTGTTTTTTTTTTTTTTTTT+TGG + chr2.3:2659597-2659616 None:intergenic 5.0%
CACAGCAAGAACTACCTGCA+TGG - chr2.3:2659762-2659781 MS.gene76523:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG - chr2.3:2661061-2661080 MS.gene76523:intron 50.0%
TTCCTTGTGGCCTCATTGCA+TGG - chr2.3:2660912-2660931 MS.gene76523:intron 50.0%
! CTCTTTTTGCAGACCTCTCG+GGG - chr2.3:2661968-2661987 MS.gene76523:CDS 50.0%
! GCTCTTTTTGCAGACCTCTC+GGG - chr2.3:2661967-2661986 MS.gene76523:CDS 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG + chr2.3:2660291-2660310 None:intergenic 50.0%
AAGTAGGATGGATCCCCGAG+AGG + chr2.3:2661984-2662003 None:intergenic 55.0%
CTCCATGCAATGAGGCCACA+AGG + chr2.3:2660917-2660936 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 2659411 2662037 2659411 ID=MS.gene76523
chr2.3 mRNA 2659411 2662037 2659411 ID=MS.gene76523.t1;Parent=MS.gene76523
chr2.3 exon 2661965 2662037 2661965 ID=MS.gene76523.t1.exon1;Parent=MS.gene76523.t1
chr2.3 CDS 2661965 2662037 2661965 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2661640 2661698 2661640 ID=MS.gene76523.t1.exon2;Parent=MS.gene76523.t1
chr2.3 CDS 2661640 2661698 2661640 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2661337 2661411 2661337 ID=MS.gene76523.t1.exon3;Parent=MS.gene76523.t1
chr2.3 CDS 2661337 2661411 2661337 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2661129 2661245 2661129 ID=MS.gene76523.t1.exon4;Parent=MS.gene76523.t1
chr2.3 CDS 2661129 2661245 2661129 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2660971 2661041 2660971 ID=MS.gene76523.t1.exon5;Parent=MS.gene76523.t1
chr2.3 CDS 2660971 2661041 2660971 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2660340 2660640 2660340 ID=MS.gene76523.t1.exon6;Parent=MS.gene76523.t1
chr2.3 CDS 2660340 2660640 2660340 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2659751 2660040 2659751 ID=MS.gene76523.t1.exon7;Parent=MS.gene76523.t1
chr2.3 CDS 2659751 2660040 2659751 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
chr2.3 exon 2659411 2659468 2659411 ID=MS.gene76523.t1.exon8;Parent=MS.gene76523.t1
chr2.3 CDS 2659411 2659468 2659411 ID=cds.MS.gene76523.t1;Parent=MS.gene76523.t1
Gene Sequence

>MS.gene76523

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCCAATTCAAAGAAAACTTCAAAGAAACCTAAATGTATGTCTTAATTTGCACTAACAATTTGTTACATATATATGATAACATGTCTTGTTTTTTTTTCCTTCTTTTTCTTCCTATGATGTAACTTGAAACAATGATTCATTATTCCAAAAAAAAAAAAAAAAAACAAACCATTTGTTCCTTGTGATTTACGGAGCCTGTATTAAAATCTTGGAAAATTTAGGGCTTGAGGCTGTTTCATATGTATAAAGTTGTGTTATATTATTATTGCTCATAGTTATTTGTTTTATTTTAATTTGTAGATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTATAATATGCAACATAACTCATTTAATTAGTGCATGTTTGAAACCACGGCGAGTTTGACAATATCACGTGATTTTGTTGAAGTTCCAAAATATAATTTTTGTCTAAATCACGGTGGCACAAAATTCTACTATACTTACCGTTAATTTAAGCATGCACTTCCATTTCTTACAGTTTCTTAATATATGCAAAAATTTAATCAATGATTTTATGTCTGTAATTTTATCAGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTAAGAACATAACAATGTATAGAATGAAATGAAGTTTTGCTACTGAATTCAACTGAATTTTATTTATAATGGTAAAGAAATACTAATGCAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTAGTACATTCACTTCTGTTTCACAAGAGTTTCATTTTTCATTTTCATACCTAAATGGAAATAATAATTAGTTGCAAACTTTACAGGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGGTATGCACATTTTCAGTGTTATCAATTACGGATCACGGAAAATATTAGTTTGTTCAAATTCTGCTACGCAACAGTGCTCTAGCATGCGCTATAGTCACTCACTATTTCACAATATTTTGTACTAAATAGTGTATTGCGAAACAACAATGATTTGTTCAAATTTCACTATTCAGTTGCGCTAGAACGCTACTATTTGACCACACAGCACGATTTTCAATGAAACAAAAACAAATTTACTTGAGGCATATGCATATGTACTAATGCATACATTTGATGCTTATTATTTTTAATGATGCCTTTAATATGATTTTGGATGATTAACTCTTGCAGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTGTAAGTCCCTATTTGGATAAACAGTTTAATTATATAAACACTTATCCTATAAGTACTTACATGTTACATATAAACTATTTCTACGCTAAAATATAAAATAAAACTGTTTTCATAAGTTATTATGAAGAGCTTATGAAAATAAGCTGAATACAACTTATAGACATGTCTTTAACTATTTCCATAAGCTCTTTCAAACGGTCACAAAATATGACTTCACAAATTACTTTGTTTTTTTTCATGTGATAAAATATAATCTTTTACTTGCGAAATAAGTAATCATGTATTGTGACATGCATCAGTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGGTAAAGGAAATATTTTGCTTTTTCTATACTACTTTATGGTTCTACATTTATTTTTTATGAGTTAAGATCATGATTTTACATTATGAGATGTGAAATGCTAGCGACACATTCTGTAACACTAGCATTTGAATACGCTCTTTTCTATTGGTTGAAATTGACAAGTTCTGATAAAATTTATGTTAGGAAATTAATATGGCTACATAGTAAAGAAAAGCTGAAACATTTTTGGTTATTTGTAAGTAGCAAATGTGAGCTAACATTACTATATTGCTCTTTTTGCAGACCTCTCGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>MS.gene76523.t1

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK