AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576500 MtrunA17_Chr8g0390511 93.363 226 12 2 1 224 1 225 6.85e-154 426
Msa0576500 MtrunA17_Chr1g0147191 60.748 214 78 2 4 215 1 210 2.86e-100 290
Msa0576500 MtrunA17_Chr6g0465041 28.141 199 112 3 10 205 55 225 6.52e-22 90.1
Msa0576500 MtrunA17_Chr1g0187331 28.571 182 103 4 7 187 8 163 2.37e-17 77.0
Msa0576500 MtrunA17_Chr7g0255351 26.178 191 114 4 9 199 88 251 2.37e-16 75.5
Msa0576500 MtrunA17_Chr1g0207521 24.747 198 122 3 10 206 84 255 3.94e-15 72.4
Msa0576500 MtrunA17_Chr2g0288811 24.607 191 117 4 9 198 10 174 5.72e-13 65.1
Msa0576500 MtrunA17_Chr2g0324001 25.490 204 123 5 9 209 122 299 4.84e-11 61.2
Msa0576500 MtrunA17_Chr2g0318131 24.631 203 128 3 5 207 174 351 6.35e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576500 AT3G24570.1 61.864 236 72 3 4 223 1 234 3.28e-106 306
Msa0576500 AT3G24570.2 56.780 236 71 4 4 223 1 221 2.67e-92 270
Msa0576500 AT5G43140.1 29.000 200 111 4 10 206 81 252 4.70e-20 85.9
Msa0576500 AT4G04470.1 28.571 189 108 4 11 198 14 176 5.76e-18 79.0
Msa0576500 AT4G04470.2 28.571 189 108 4 11 198 14 176 5.76e-18 79.0
Msa0576500 AT4G14305.1 29.016 193 110 4 7 198 8 174 1.72e-17 77.4
Msa0576500 AT5G19750.1 26.633 199 119 3 9 207 116 287 1.60e-15 73.9
Msa0576500 AT2G14860.1 24.103 195 123 2 10 204 76 245 4.23e-15 72.4
Msa0576500 AT4G33905.1 22.680 194 125 3 10 203 85 253 1.03e-12 65.9
Msa0576500 AT4G14305.2 28.409 176 97 6 25 198 14 162 2.60e-11 60.5
Msa0576500 AT1G52870.2 26.368 201 121 4 8 207 170 344 6.17e-11 61.6
Msa0576500 AT2G42770.1 27.273 187 115 6 19 198 55 227 8.95e-11 60.1

Find 72 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTCCAGTTGGCCATTTC+TGG 0.094401 4_1:-80579106 Msa0576500:intron
GTTGGATTAGATATTCATTT+TGG 0.174535 4_1:+80579687 None:intergenic
TCGCCACCTCCGGCGTCCTT+TGG 0.232906 4_1:-80579383 Msa0576500:CDS
CAACCTATTCTATTCTATTC+AGG 0.259703 4_1:+80579482 None:intergenic
CGCCACCTCCGGCGTCCTTT+GGG 0.300937 4_1:-80579382 Msa0576500:CDS
TTATCGTATTAATCTGGATT+TGG 0.308579 4_1:+80579584 None:intergenic
AAAACGAAATTTAAAAGTTA+AGG 0.324741 4_1:-80579714 Msa0576500:five_prime_UTR
TGTAAACCTGTTCTGCTTGC+TGG 0.334368 4_1:-80578253 Msa0576500:CDS
TGTCTCTTATCGTATTAATC+TGG 0.342115 4_1:+80579578 None:intergenic
CAACCATTTCATTCTTCAAA+TGG 0.346801 4_1:-80578171 Msa0576500:CDS
ATTAAAATTGAAGAACATCT+TGG 0.355071 4_1:+80578021 None:intergenic
TCCGGCGTCCTTTGGGCTGT+TGG 0.355440 4_1:-80579375 Msa0576500:CDS
TTAAAATTGAAGAACATCTT+GGG 0.371624 4_1:+80578022 None:intergenic
TGGATAGTGCTTTCTTGTCT+TGG 0.372265 4_1:-80578233 Msa0576500:CDS
CGTGTTTCTCTGTCTACTGT+TGG 0.376956 4_1:+80579669 None:intergenic
CACTATCCAGCAAGCAGAAC+AGG 0.391334 4_1:+80578247 None:intergenic
GTTACTAGTATGTTTGGAAT+TGG 0.394362 4_1:-80579134 Msa0576500:CDS
CGTATTAATCTGGATTTGGT+TGG 0.407763 4_1:+80579588 None:intergenic
GTTGCTGTTACTAGTATGTT+TGG 0.411075 4_1:-80579140 Msa0576500:CDS
GTATTAATCTGGATTTGGTT+GGG 0.414120 4_1:+80579589 None:intergenic
TGATATTGAAGGCATGGAAT+TGG 0.416123 4_1:-80579446 Msa0576500:CDS
TTTCCATTTGAAGAATGAAA+TGG 0.417993 4_1:+80578168 None:intergenic
TAATACGATAAGAGACAGTT+AGG 0.423553 4_1:-80579572 Msa0576500:five_prime_UTR
TAGTGCTTTCTTGTCTTGGT+TGG 0.424910 4_1:-80578229 Msa0576500:CDS
ACTCAGTAATTAATTAATAG+TGG 0.430643 4_1:-80577925 Msa0576500:three_prime_UTR
CCACCTTCTAAAACCAAGGC+TGG 0.437288 4_1:+80578339 None:intergenic
GTCAATGATGATGAAGATAC+TGG 0.437620 4_1:-80578140 Msa0576500:exon
TTTCATTCTTCAAATGGAAA+AGG 0.437632 4_1:-80578165 Msa0576500:CDS
CTCTTGTAGGTATGAAGGCT+TGG 0.440685 4_1:-80578544 Msa0576500:intron
ATTGTAATAGATAGATTCAT+AGG 0.441979 4_1:-80578069 Msa0576500:three_prime_UTR
GAGGAATTATTTCCCAGCCT+TGG 0.443185 4_1:-80578352 Msa0576500:CDS
ACTTACATGGGATTGTCTGC+TGG 0.443240 4_1:-80578408 Msa0576500:CDS
TTCATCTCTTGTAGGTATGA+AGG 0.445708 4_1:-80578549 Msa0576500:intron
GTGGCGACTTGGGTCTTCAC+TGG 0.448316 4_1:+80579399 None:intergenic
TTCAAGTCTTCCTTCACCTC+AGG 0.449281 4_1:+80578375 None:intergenic
ATGATAAATTTGTCATCGAT+TGG 0.450538 4_1:-80579169 Msa0576500:CDS
AGCCCAAAGGACGCCGGAGG+TGG 0.459956 4_1:+80579380 None:intergenic
GCACCTGAATAGAATAGAAT+AGG 0.464164 4_1:-80579485 Msa0576500:five_prime_UTR
GACGCCGGAGGTGGCGACTT+GGG 0.475559 4_1:+80579389 None:intergenic
GCTACGGATCGTGCAGTTTG+TGG 0.477640 4_1:+80578489 None:intergenic
TGGTGTGTGGCCAATTGTGC+AGG 0.479891 4_1:-80578319 Msa0576500:CDS
AAGACCCAAGTCGCCACCTC+CGG 0.484846 4_1:-80579393 Msa0576500:CDS
ACATACCAGAAATGGCCAAC+TGG 0.486779 4_1:+80579101 None:intergenic
TACAATTTCTAAAACATCAC+AGG 0.499099 4_1:+80578086 None:intergenic
GGACGCCGGAGGTGGCGACT+TGG 0.499705 4_1:+80579388 None:intergenic
CGAAATTCTGTGCATGTGTA+TGG 0.503898 4_1:+80577949 None:intergenic
CATTCTTCAAATGGAAAAGG+TGG 0.505391 4_1:-80578162 Msa0576500:CDS
AAAACTAATTGCTGAGGACG+TGG 0.505863 4_1:+80579546 None:intergenic
TACAGAAGCTGGTACTTGAC+AGG 0.517117 4_1:+80578276 None:intergenic
TAAGATGTCGATGATATTGA+AGG 0.531915 4_1:-80579457 Msa0576500:exon
TAAAATTGAAGAACATCTTG+GGG 0.539160 4_1:+80578023 None:intergenic
AGCAACAGAAAGATGCAGCT+TGG 0.545356 4_1:-80578206 Msa0576500:CDS
AAAGACTATTCCTGAGGTGA+AGG 0.559012 4_1:-80578385 Msa0576500:CDS
ACAGGTTTACATACAGAAGC+TGG 0.562212 4_1:+80578265 None:intergenic
TGTCGATGATATTGAAGGCA+TGG 0.565785 4_1:-80579452 Msa0576500:CDS
AAGATGCAGCTTGGAAACAA+TGG 0.578706 4_1:-80578197 Msa0576500:CDS
CACACCACCTTCTAAAACCA+AGG 0.583928 4_1:+80578335 None:intergenic
CACCTTCTAAAACCAAGGCT+GGG 0.586216 4_1:+80578340 None:intergenic
TCCAACAGCCCAAAGGACGC+CGG 0.588788 4_1:+80579374 None:intergenic
AGGTGAAGGAAGACTTGAAG+AGG 0.593785 4_1:-80578371 Msa0576500:CDS
CGTAGCTACAAAAGTTGCAA+TGG 0.595127 4_1:-80578472 Msa0576500:CDS
CTGAATAGAATAGAATAGGT+TGG 0.598755 4_1:-80579481 Msa0576500:five_prime_UTR
AAGAAAACAAACAAATGCAC+CGG 0.610944 4_1:+80578432 None:intergenic
GCTACAAAAGTTGCAATGGA+CGG 0.615386 4_1:-80578468 Msa0576500:CDS
AACAGCCCAAAGGACGCCGG+AGG 0.618772 4_1:+80579377 None:intergenic
ATTAACAAAACTAATTGCTG+AGG 0.639526 4_1:+80579540 None:intergenic
AAACTAATTGCTGAGGACGT+GGG 0.654597 4_1:+80579547 None:intergenic
GATGAAGATACTGGAAACAA+CGG 0.663149 4_1:-80578131 Msa0576500:three_prime_UTR
TCTTCACTGGATGAATTGAG+AGG 0.675816 4_1:+80579412 None:intergenic
TGACATCTCCAACAGCCCAA+AGG 0.677959 4_1:+80579367 None:intergenic
AAAATTGAAGAACATCTTGG+GGG 0.684075 4_1:+80578024 None:intergenic
TGCTGGAAAGACTATTCCTG+AGG 0.700231 4_1:-80578391 Msa0576500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATATTTATAATTGC+AGG - chr4_1:80578446-80578465 Msa0576500:CDS 10.0%
!! TTTATAATATTTATAATTGC+AGG - chr4_1:80578446-80578465 Msa0576500:CDS 10.0%
!! AAAACGAAATTTAAAAGTTA+AGG - chr4_1:80577936-80577955 Msa0576500:three_prime_UTR 15.0%
!! AAAACGAAATTTAAAAGTTA+AGG - chr4_1:80577936-80577955 Msa0576500:three_prime_UTR 15.0%
!!! TTTGTTTTCTTTACTTACAT+GGG - chr4_1:80579230-80579249 Msa0576500:intron 20.0%
!! ATTGTAATAGATAGATTCAT+AGG - chr4_1:80579581-80579600 Msa0576500:five_prime_UTR 20.0%
!! TTAAAATTGAAGAACATCTT+GGG + chr4_1:80579631-80579650 None:intergenic 20.0%
!! ATTAAAATTGAAGAACATCT+TGG + chr4_1:80579632-80579651 None:intergenic 20.0%
!!! TTCTACTCTTTTAATCTTTT+CGG + chr4_1:80579670-80579689 None:intergenic 20.0%
!! ACTCAGTAATTAATTAATAG+TGG - chr4_1:80579725-80579744 Msa0576500:five_prime_UTR 20.0%
!!! TTTGTTTTCTTTACTTACAT+GGG - chr4_1:80579230-80579249 Msa0576500:intron 20.0%
!! ATTGTAATAGATAGATTCAT+AGG - chr4_1:80579581-80579600 Msa0576500:five_prime_UTR 20.0%
!! TTAAAATTGAAGAACATCTT+GGG + chr4_1:80579631-80579650 None:intergenic 20.0%
!! ATTAAAATTGAAGAACATCT+TGG + chr4_1:80579632-80579651 None:intergenic 20.0%
!!! TTCTACTCTTTTAATCTTTT+CGG + chr4_1:80579670-80579689 None:intergenic 20.0%
!! ACTCAGTAATTAATTAATAG+TGG - chr4_1:80579725-80579744 Msa0576500:five_prime_UTR 20.0%
!!! GTTGGATTAGATATTCATTT+TGG + chr4_1:80577966-80577985 None:intergenic 25.0%
! TTATCGTATTAATCTGGATT+TGG + chr4_1:80578069-80578088 None:intergenic 25.0%
! ATTAACAAAACTAATTGCTG+AGG + chr4_1:80578113-80578132 None:intergenic 25.0%
! AAAGAGGGTAATATAGAAAT+GGG + chr4_1:80578391-80578410 None:intergenic 25.0%
! ATGATAAATTTGTCATCGAT+TGG - chr4_1:80578481-80578500 Msa0576500:CDS 25.0%
! AAGAAAAAACATACCAGAAA+TGG + chr4_1:80578560-80578579 None:intergenic 25.0%
!! ATGCTGTTTATTTACATTAC+AGG - chr4_1:80578591-80578610 Msa0576500:intron 25.0%
!! AACTTCACATTTTTGTTCAA+AGG - chr4_1:80578664-80578683 Msa0576500:intron 25.0%
!!! ATTTACAAGCTGATTTTGTA+AGG - chr4_1:80578762-80578781 Msa0576500:intron 25.0%
!!! TTTACAAGCTGATTTTGTAA+GGG - chr4_1:80578763-80578782 Msa0576500:intron 25.0%
!! CAGTGATTTCATAAGATTTT+GGG - chr4_1:80578941-80578960 Msa0576500:intron 25.0%
!!! GTTTGTTTTCTTTACTTACA+TGG - chr4_1:80579229-80579248 Msa0576500:intron 25.0%
! AAATTAAAAACCTGCACAAT+TGG + chr4_1:80579344-80579363 None:intergenic 25.0%
!!! TTGTGCAGGTTTTTAATTTT+CGG - chr4_1:80579345-80579364 Msa0576500:CDS 25.0%
! TTTCCATTTGAAGAATGAAA+TGG + chr4_1:80579485-80579504 None:intergenic 25.0%
! TTTCATTCTTCAAATGGAAA+AGG - chr4_1:80579485-80579504 Msa0576500:five_prime_UTR 25.0%
! TCACAGGAAAAATTATGAAA+TGG + chr4_1:80579551-80579570 None:intergenic 25.0%
!!! TACAATTTCTAAAACATCAC+AGG + chr4_1:80579567-80579586 None:intergenic 25.0%
! TAAAATTGAAGAACATCTTG+GGG + chr4_1:80579630-80579649 None:intergenic 25.0%
!! TCTACTCTTTTAATCTTTTC+GGG + chr4_1:80579669-80579688 None:intergenic 25.0%
!!! GTTGGATTAGATATTCATTT+TGG + chr4_1:80577966-80577985 None:intergenic 25.0%
! TTATCGTATTAATCTGGATT+TGG + chr4_1:80578069-80578088 None:intergenic 25.0%
! ATTAACAAAACTAATTGCTG+AGG + chr4_1:80578113-80578132 None:intergenic 25.0%
! AAAGAGGGTAATATAGAAAT+GGG + chr4_1:80578391-80578410 None:intergenic 25.0%
! ATGATAAATTTGTCATCGAT+TGG - chr4_1:80578481-80578500 Msa0576500:CDS 25.0%
! AAGAAAAAACATACCAGAAA+TGG + chr4_1:80578560-80578579 None:intergenic 25.0%
!! ATGCTGTTTATTTACATTAC+AGG - chr4_1:80578591-80578610 Msa0576500:intron 25.0%
!! AACTTCACATTTTTGTTCAA+AGG - chr4_1:80578664-80578683 Msa0576500:intron 25.0%
!!! ATTTACAAGCTGATTTTGTA+AGG - chr4_1:80578762-80578781 Msa0576500:intron 25.0%
!!! TTTACAAGCTGATTTTGTAA+GGG - chr4_1:80578763-80578782 Msa0576500:intron 25.0%
!! CAGTGATTTCATAAGATTTT+GGG - chr4_1:80578941-80578960 Msa0576500:intron 25.0%
!!! GTTTGTTTTCTTTACTTACA+TGG - chr4_1:80579229-80579248 Msa0576500:intron 25.0%
! AAATTAAAAACCTGCACAAT+TGG + chr4_1:80579344-80579363 None:intergenic 25.0%
!!! TTGTGCAGGTTTTTAATTTT+CGG - chr4_1:80579345-80579364 Msa0576500:CDS 25.0%
! TTTCCATTTGAAGAATGAAA+TGG + chr4_1:80579485-80579504 None:intergenic 25.0%
! TTTCATTCTTCAAATGGAAA+AGG - chr4_1:80579485-80579504 Msa0576500:five_prime_UTR 25.0%
! TCACAGGAAAAATTATGAAA+TGG + chr4_1:80579551-80579570 None:intergenic 25.0%
!!! TACAATTTCTAAAACATCAC+AGG + chr4_1:80579567-80579586 None:intergenic 25.0%
! TAAAATTGAAGAACATCTTG+GGG + chr4_1:80579630-80579649 None:intergenic 25.0%
!! TCTACTCTTTTAATCTTTTC+GGG + chr4_1:80579669-80579688 None:intergenic 25.0%
! GTATTAATCTGGATTTGGTT+GGG + chr4_1:80578064-80578083 None:intergenic 30.0%
TGTCTCTTATCGTATTAATC+TGG + chr4_1:80578075-80578094 None:intergenic 30.0%
TAATACGATAAGAGACAGTT+AGG - chr4_1:80578078-80578097 Msa0576500:three_prime_UTR 30.0%
CAACCTATTCTATTCTATTC+AGG + chr4_1:80578171-80578190 None:intergenic 30.0%
CTGAATAGAATAGAATAGGT+TGG - chr4_1:80578169-80578188 Msa0576500:CDS 30.0%
TAAGATGTCGATGATATTGA+AGG - chr4_1:80578193-80578212 Msa0576500:CDS 30.0%
GAAAGAGGGTAATATAGAAA+TGG + chr4_1:80578392-80578411 None:intergenic 30.0%
! GTTACTAGTATGTTTGGAAT+TGG - chr4_1:80578516-80578535 Msa0576500:CDS 30.0%
!!! ATGTTTGGAATTGGTTTTGT+TGG - chr4_1:80578525-80578544 Msa0576500:CDS 30.0%
AGTTAACAACAATTTGACAG+AGG + chr4_1:80578648-80578667 None:intergenic 30.0%
GGTCAATATCTTATTCAATG+TGG + chr4_1:80578706-80578725 None:intergenic 30.0%
CTACTTGTAAAGTCATTTAC+AGG + chr4_1:80578727-80578746 None:intergenic 30.0%
CTGTAAATGACTTTACAAGT+AGG - chr4_1:80578725-80578744 Msa0576500:intron 30.0%
CAAAATCAGCTTGTAAATGA+GGG + chr4_1:80578760-80578779 None:intergenic 30.0%
ACAAAATCAGCTTGTAAATG+AGG + chr4_1:80578761-80578780 None:intergenic 30.0%
! GATTTTGTAAGGGTTGAATT+TGG - chr4_1:80578773-80578792 Msa0576500:intron 30.0%
CTAATACCATCTTAGAATCT+AGG + chr4_1:80578804-80578823 None:intergenic 30.0%
TTAACTCAATTCCAGAAAAC+CGG + chr4_1:80578897-80578916 None:intergenic 30.0%
! GCAGTGATTTCATAAGATTT+TGG - chr4_1:80578940-80578959 Msa0576500:intron 30.0%
! TGATTTCATAAGATTTTGGG+AGG - chr4_1:80578944-80578963 Msa0576500:intron 30.0%
!! GATTTCATAAGATTTTGGGA+GGG - chr4_1:80578945-80578964 Msa0576500:intron 30.0%
ATTCAGTTTACTAAGAAGCT+TGG - chr4_1:80578994-80579013 Msa0576500:intron 30.0%
TTATAATTTCCTGCTGCAAA+AGG - chr4_1:80579048-80579067 Msa0576500:intron 30.0%
AAGAAAACAAACAAATGCAC+CGG + chr4_1:80579221-80579240 None:intergenic 30.0%
CAACCATTTCATTCTTCAAA+TGG - chr4_1:80579479-80579498 Msa0576500:five_prime_UTR 30.0%
AAAATTGAAGAACATCTTGG+GGG + chr4_1:80579629-80579648 None:intergenic 30.0%
! GTATTAATCTGGATTTGGTT+GGG + chr4_1:80578064-80578083 None:intergenic 30.0%
TGTCTCTTATCGTATTAATC+TGG + chr4_1:80578075-80578094 None:intergenic 30.0%
TAATACGATAAGAGACAGTT+AGG - chr4_1:80578078-80578097 Msa0576500:three_prime_UTR 30.0%
CAACCTATTCTATTCTATTC+AGG + chr4_1:80578171-80578190 None:intergenic 30.0%
CTGAATAGAATAGAATAGGT+TGG - chr4_1:80578169-80578188 Msa0576500:CDS 30.0%
TAAGATGTCGATGATATTGA+AGG - chr4_1:80578193-80578212 Msa0576500:CDS 30.0%
GAAAGAGGGTAATATAGAAA+TGG + chr4_1:80578392-80578411 None:intergenic 30.0%
! GTTACTAGTATGTTTGGAAT+TGG - chr4_1:80578516-80578535 Msa0576500:CDS 30.0%
!!! ATGTTTGGAATTGGTTTTGT+TGG - chr4_1:80578525-80578544 Msa0576500:CDS 30.0%
AGTTAACAACAATTTGACAG+AGG + chr4_1:80578648-80578667 None:intergenic 30.0%
GGTCAATATCTTATTCAATG+TGG + chr4_1:80578706-80578725 None:intergenic 30.0%
CTACTTGTAAAGTCATTTAC+AGG + chr4_1:80578727-80578746 None:intergenic 30.0%
CTGTAAATGACTTTACAAGT+AGG - chr4_1:80578725-80578744 Msa0576500:intron 30.0%
CAAAATCAGCTTGTAAATGA+GGG + chr4_1:80578760-80578779 None:intergenic 30.0%
ACAAAATCAGCTTGTAAATG+AGG + chr4_1:80578761-80578780 None:intergenic 30.0%
! GATTTTGTAAGGGTTGAATT+TGG - chr4_1:80578773-80578792 Msa0576500:intron 30.0%
CTAATACCATCTTAGAATCT+AGG + chr4_1:80578804-80578823 None:intergenic 30.0%
TTAACTCAATTCCAGAAAAC+CGG + chr4_1:80578897-80578916 None:intergenic 30.0%
! GCAGTGATTTCATAAGATTT+TGG - chr4_1:80578940-80578959 Msa0576500:intron 30.0%
! TGATTTCATAAGATTTTGGG+AGG - chr4_1:80578944-80578963 Msa0576500:intron 30.0%
!! GATTTCATAAGATTTTGGGA+GGG - chr4_1:80578945-80578964 Msa0576500:intron 30.0%
ATTCAGTTTACTAAGAAGCT+TGG - chr4_1:80578994-80579013 Msa0576500:intron 30.0%
TTATAATTTCCTGCTGCAAA+AGG - chr4_1:80579048-80579067 Msa0576500:intron 30.0%
AAGAAAACAAACAAATGCAC+CGG + chr4_1:80579221-80579240 None:intergenic 30.0%
CAACCATTTCATTCTTCAAA+TGG - chr4_1:80579479-80579498 Msa0576500:five_prime_UTR 30.0%
AAAATTGAAGAACATCTTGG+GGG + chr4_1:80579629-80579648 None:intergenic 30.0%
! CGTATTAATCTGGATTTGGT+TGG + chr4_1:80578065-80578084 None:intergenic 35.0%
GCACCTGAATAGAATAGAAT+AGG - chr4_1:80578165-80578184 Msa0576500:CDS 35.0%
! TGATATTGAAGGCATGGAAT+TGG - chr4_1:80578204-80578223 Msa0576500:CDS 35.0%
GTATCGTTAAAGACATACAG+TGG + chr4_1:80578369-80578388 None:intergenic 35.0%
! GTTGCTGTTACTAGTATGTT+TGG - chr4_1:80578510-80578529 Msa0576500:CDS 35.0%
! TACATTACAGGCTTTCTAGT+TGG - chr4_1:80578603-80578622 Msa0576500:intron 35.0%
AGAACCTATACAAAGTCTGT+TGG - chr4_1:80578822-80578841 Msa0576500:intron 35.0%
GAACCTATACAAAGTCTGTT+GGG - chr4_1:80578823-80578842 Msa0576500:intron 35.0%
!! CACTGCTAGTCTTAGAATTT+GGG + chr4_1:80578926-80578945 None:intergenic 35.0%
!! TCACTGCTAGTCTTAGAATT+TGG + chr4_1:80578927-80578946 None:intergenic 35.0%
TTCATACCTACAAGAGATGA+AGG + chr4_1:80579102-80579121 None:intergenic 35.0%
TTCATCTCTTGTAGGTATGA+AGG - chr4_1:80579101-80579120 Msa0576500:intron 35.0%
! CATTGCAACTTTTGTAGCTA+CGG + chr4_1:80579180-80579199 None:intergenic 35.0%
CATTCTTCAAATGGAAAAGG+TGG - chr4_1:80579488-80579507 Msa0576500:five_prime_UTR 35.0%
! GTCAATGATGATGAAGATAC+TGG - chr4_1:80579510-80579529 Msa0576500:five_prime_UTR 35.0%
GATGAAGATACTGGAAACAA+CGG - chr4_1:80579519-80579538 Msa0576500:five_prime_UTR 35.0%
! CGTATTAATCTGGATTTGGT+TGG + chr4_1:80578065-80578084 None:intergenic 35.0%
GCACCTGAATAGAATAGAAT+AGG - chr4_1:80578165-80578184 Msa0576500:CDS 35.0%
! TGATATTGAAGGCATGGAAT+TGG - chr4_1:80578204-80578223 Msa0576500:CDS 35.0%
GTATCGTTAAAGACATACAG+TGG + chr4_1:80578369-80578388 None:intergenic 35.0%
! GTTGCTGTTACTAGTATGTT+TGG - chr4_1:80578510-80578529 Msa0576500:CDS 35.0%
! TACATTACAGGCTTTCTAGT+TGG - chr4_1:80578603-80578622 Msa0576500:intron 35.0%
AGAACCTATACAAAGTCTGT+TGG - chr4_1:80578822-80578841 Msa0576500:intron 35.0%
GAACCTATACAAAGTCTGTT+GGG - chr4_1:80578823-80578842 Msa0576500:intron 35.0%
!! CACTGCTAGTCTTAGAATTT+GGG + chr4_1:80578926-80578945 None:intergenic 35.0%
!! TCACTGCTAGTCTTAGAATT+TGG + chr4_1:80578927-80578946 None:intergenic 35.0%
TTCATACCTACAAGAGATGA+AGG + chr4_1:80579102-80579121 None:intergenic 35.0%
TTCATCTCTTGTAGGTATGA+AGG - chr4_1:80579101-80579120 Msa0576500:intron 35.0%
! CATTGCAACTTTTGTAGCTA+CGG + chr4_1:80579180-80579199 None:intergenic 35.0%
CATTCTTCAAATGGAAAAGG+TGG - chr4_1:80579488-80579507 Msa0576500:five_prime_UTR 35.0%
! GTCAATGATGATGAAGATAC+TGG - chr4_1:80579510-80579529 Msa0576500:five_prime_UTR 35.0%
GATGAAGATACTGGAAACAA+CGG - chr4_1:80579519-80579538 Msa0576500:five_prime_UTR 35.0%
AAACTAATTGCTGAGGACGT+GGG + chr4_1:80578106-80578125 None:intergenic 40.0%
AAAACTAATTGCTGAGGACG+TGG + chr4_1:80578107-80578126 None:intergenic 40.0%
TGTCGATGATATTGAAGGCA+TGG - chr4_1:80578198-80578217 Msa0576500:CDS 40.0%
TCTTCACTGGATGAATTGAG+AGG + chr4_1:80578241-80578260 None:intergenic 40.0%
!!! ATTGGTTTTGTTGGTCCAGT+TGG - chr4_1:80578534-80578553 Msa0576500:CDS 40.0%
! GCTCAACCTAGATTCTAAGA+TGG - chr4_1:80578795-80578814 Msa0576500:intron 40.0%
GATTCCTTCATCTTACAAGC+CGG - chr4_1:80578875-80578894 Msa0576500:intron 40.0%
!! AAAACCGGCTTGTAAGATGA+AGG + chr4_1:80578882-80578901 None:intergenic 40.0%
! CATACAAATCCTTTTGCAGC+AGG + chr4_1:80579060-80579079 None:intergenic 40.0%
AACCAACCTTCATCTCTTGT+AGG - chr4_1:80579093-80579112 Msa0576500:intron 40.0%
TACCTACAAGAGATGAAGGT+TGG + chr4_1:80579098-80579117 None:intergenic 40.0%
CGTAGCTACAAAAGTTGCAA+TGG - chr4_1:80579178-80579197 Msa0576500:CDS 40.0%
GCTACAAAAGTTGCAATGGA+CGG - chr4_1:80579182-80579201 Msa0576500:CDS 40.0%
AAAGACTATTCCTGAGGTGA+AGG - chr4_1:80579265-80579284 Msa0576500:intron 40.0%
ACAGGTTTACATACAGAAGC+TGG + chr4_1:80579388-80579407 None:intergenic 40.0%
TGGATAGTGCTTTCTTGTCT+TGG - chr4_1:80579417-80579436 Msa0576500:CDS 40.0%
TAGTGCTTTCTTGTCTTGGT+TGG - chr4_1:80579421-80579440 Msa0576500:CDS 40.0%
AAGATGCAGCTTGGAAACAA+TGG - chr4_1:80579453-80579472 Msa0576500:CDS 40.0%
CGAAATTCTGTGCATGTGTA+TGG + chr4_1:80579704-80579723 None:intergenic 40.0%
AAACTAATTGCTGAGGACGT+GGG + chr4_1:80578106-80578125 None:intergenic 40.0%
AAAACTAATTGCTGAGGACG+TGG + chr4_1:80578107-80578126 None:intergenic 40.0%
TGTCGATGATATTGAAGGCA+TGG - chr4_1:80578198-80578217 Msa0576500:CDS 40.0%
TCTTCACTGGATGAATTGAG+AGG + chr4_1:80578241-80578260 None:intergenic 40.0%
!!! ATTGGTTTTGTTGGTCCAGT+TGG - chr4_1:80578534-80578553 Msa0576500:CDS 40.0%
! GCTCAACCTAGATTCTAAGA+TGG - chr4_1:80578795-80578814 Msa0576500:intron 40.0%
GATTCCTTCATCTTACAAGC+CGG - chr4_1:80578875-80578894 Msa0576500:intron 40.0%
!! AAAACCGGCTTGTAAGATGA+AGG + chr4_1:80578882-80578901 None:intergenic 40.0%
! CATACAAATCCTTTTGCAGC+AGG + chr4_1:80579060-80579079 None:intergenic 40.0%
AACCAACCTTCATCTCTTGT+AGG - chr4_1:80579093-80579112 Msa0576500:intron 40.0%
TACCTACAAGAGATGAAGGT+TGG + chr4_1:80579098-80579117 None:intergenic 40.0%
CGTAGCTACAAAAGTTGCAA+TGG - chr4_1:80579178-80579197 Msa0576500:CDS 40.0%
GCTACAAAAGTTGCAATGGA+CGG - chr4_1:80579182-80579201 Msa0576500:CDS 40.0%
AAAGACTATTCCTGAGGTGA+AGG - chr4_1:80579265-80579284 Msa0576500:intron 40.0%
ACAGGTTTACATACAGAAGC+TGG + chr4_1:80579388-80579407 None:intergenic 40.0%
TGGATAGTGCTTTCTTGTCT+TGG - chr4_1:80579417-80579436 Msa0576500:CDS 40.0%
TAGTGCTTTCTTGTCTTGGT+TGG - chr4_1:80579421-80579440 Msa0576500:CDS 40.0%
AAGATGCAGCTTGGAAACAA+TGG - chr4_1:80579453-80579472 Msa0576500:CDS 40.0%
CGAAATTCTGTGCATGTGTA+TGG + chr4_1:80579704-80579723 None:intergenic 40.0%
CGTGTTTCTCTGTCTACTGT+TGG + chr4_1:80577984-80578003 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAAGA+GGG + chr4_1:80578406-80578425 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAAG+AGG + chr4_1:80578407-80578426 None:intergenic 45.0%
ACATACCAGAAATGGCCAAC+TGG + chr4_1:80578552-80578571 None:intergenic 45.0%
TGGCCCAACAGACTTTGTAT+AGG + chr4_1:80578829-80578848 None:intergenic 45.0%
!! CATCTTACAAGCCGGTTTTC+TGG - chr4_1:80578883-80578902 Msa0576500:intron 45.0%
CTCTTGTAGGTATGAAGGCT+TGG - chr4_1:80579106-80579125 Msa0576500:intron 45.0%
! GCAATGGACGGCTTGATTTT+CGG - chr4_1:80579194-80579213 Msa0576500:intron 45.0%
ACTTACATGGGATTGTCTGC+TGG - chr4_1:80579242-80579261 Msa0576500:intron 45.0%
TGCTGGAAAGACTATTCCTG+AGG - chr4_1:80579259-80579278 Msa0576500:intron 45.0%
TTCAAGTCTTCCTTCACCTC+AGG + chr4_1:80579278-80579297 None:intergenic 45.0%
AGGTGAAGGAAGACTTGAAG+AGG - chr4_1:80579279-80579298 Msa0576500:intron 45.0%
GAGGAATTATTTCCCAGCCT+TGG - chr4_1:80579298-80579317 Msa0576500:intron 45.0%
!!! TTCCCAGCCTTGGTTTTAGA+AGG - chr4_1:80579308-80579327 Msa0576500:CDS 45.0%
!! CACCTTCTAAAACCAAGGCT+GGG + chr4_1:80579313-80579332 None:intergenic 45.0%
!! CACACCACCTTCTAAAACCA+AGG + chr4_1:80579318-80579337 None:intergenic 45.0%
!!! TGGTTTTAGAAGGTGGTGTG+TGG - chr4_1:80579318-80579337 Msa0576500:CDS 45.0%
TACAGAAGCTGGTACTTGAC+AGG + chr4_1:80579377-80579396 None:intergenic 45.0%
TGTAAACCTGTTCTGCTTGC+TGG - chr4_1:80579397-80579416 Msa0576500:CDS 45.0%
AGCAACAGAAAGATGCAGCT+TGG - chr4_1:80579444-80579463 Msa0576500:CDS 45.0%
CGTGTTTCTCTGTCTACTGT+TGG + chr4_1:80577984-80578003 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAAGA+GGG + chr4_1:80578406-80578425 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAAG+AGG + chr4_1:80578407-80578426 None:intergenic 45.0%
ACATACCAGAAATGGCCAAC+TGG + chr4_1:80578552-80578571 None:intergenic 45.0%
TGGCCCAACAGACTTTGTAT+AGG + chr4_1:80578829-80578848 None:intergenic 45.0%
!! CATCTTACAAGCCGGTTTTC+TGG - chr4_1:80578883-80578902 Msa0576500:intron 45.0%
CTCTTGTAGGTATGAAGGCT+TGG - chr4_1:80579106-80579125 Msa0576500:intron 45.0%
! GCAATGGACGGCTTGATTTT+CGG - chr4_1:80579194-80579213 Msa0576500:intron 45.0%
ACTTACATGGGATTGTCTGC+TGG - chr4_1:80579242-80579261 Msa0576500:intron 45.0%
TGCTGGAAAGACTATTCCTG+AGG - chr4_1:80579259-80579278 Msa0576500:intron 45.0%
TTCAAGTCTTCCTTCACCTC+AGG + chr4_1:80579278-80579297 None:intergenic 45.0%
AGGTGAAGGAAGACTTGAAG+AGG - chr4_1:80579279-80579298 Msa0576500:intron 45.0%
GAGGAATTATTTCCCAGCCT+TGG - chr4_1:80579298-80579317 Msa0576500:intron 45.0%
!!! TTCCCAGCCTTGGTTTTAGA+AGG - chr4_1:80579308-80579327 Msa0576500:CDS 45.0%
!! CACCTTCTAAAACCAAGGCT+GGG + chr4_1:80579313-80579332 None:intergenic 45.0%
!! CACACCACCTTCTAAAACCA+AGG + chr4_1:80579318-80579337 None:intergenic 45.0%
!!! TGGTTTTAGAAGGTGGTGTG+TGG - chr4_1:80579318-80579337 Msa0576500:CDS 45.0%
TACAGAAGCTGGTACTTGAC+AGG + chr4_1:80579377-80579396 None:intergenic 45.0%
TGTAAACCTGTTCTGCTTGC+TGG - chr4_1:80579397-80579416 Msa0576500:CDS 45.0%
AGCAACAGAAAGATGCAGCT+TGG - chr4_1:80579444-80579463 Msa0576500:CDS 45.0%
TGACATCTCCAACAGCCCAA+AGG + chr4_1:80578286-80578305 None:intergenic 50.0%
TTGGTCCAGTTGGCCATTTC+TGG - chr4_1:80578544-80578563 Msa0576500:intron 50.0%
!! CCACCTTCTAAAACCAAGGC+TGG + chr4_1:80579314-80579333 None:intergenic 50.0%
!!! CCAGCCTTGGTTTTAGAAGG+TGG - chr4_1:80579311-80579330 Msa0576500:CDS 50.0%
CACTATCCAGCAAGCAGAAC+AGG + chr4_1:80579406-80579425 None:intergenic 50.0%
TGACATCTCCAACAGCCCAA+AGG + chr4_1:80578286-80578305 None:intergenic 50.0%
TTGGTCCAGTTGGCCATTTC+TGG - chr4_1:80578544-80578563 Msa0576500:intron 50.0%
!! CCACCTTCTAAAACCAAGGC+TGG + chr4_1:80579314-80579333 None:intergenic 50.0%
!!! CCAGCCTTGGTTTTAGAAGG+TGG - chr4_1:80579311-80579330 Msa0576500:CDS 50.0%
CACTATCCAGCAAGCAGAAC+AGG + chr4_1:80579406-80579425 None:intergenic 50.0%
! TGGGAGGGTTCTGCTTTGAG+AGG - chr4_1:80578960-80578979 Msa0576500:intron 55.0%
!! GGGAGGGTTCTGCTTTGAGA+GGG - chr4_1:80578961-80578980 Msa0576500:intron 55.0%
GCTACGGATCGTGCAGTTTG+TGG + chr4_1:80579164-80579183 None:intergenic 55.0%
! GGACGGCTTGATTTTCGGTC+CGG - chr4_1:80579199-80579218 Msa0576500:intron 55.0%
TGGTGTGTGGCCAATTGTGC+AGG - chr4_1:80579331-80579350 Msa0576500:CDS 55.0%
! TGGGAGGGTTCTGCTTTGAG+AGG - chr4_1:80578960-80578979 Msa0576500:intron 55.0%
!! GGGAGGGTTCTGCTTTGAGA+GGG - chr4_1:80578961-80578980 Msa0576500:intron 55.0%
GCTACGGATCGTGCAGTTTG+TGG + chr4_1:80579164-80579183 None:intergenic 55.0%
! GGACGGCTTGATTTTCGGTC+CGG - chr4_1:80579199-80579218 Msa0576500:intron 55.0%
TGGTGTGTGGCCAATTGTGC+AGG - chr4_1:80579331-80579350 Msa0576500:CDS 55.0%
! GTGGCGACTTGGGTCTTCAC+TGG + chr4_1:80578254-80578273 None:intergenic 60.0%
AAGACCCAAGTCGCCACCTC+CGG - chr4_1:80578257-80578276 Msa0576500:CDS 60.0%
TCCAACAGCCCAAAGGACGC+CGG + chr4_1:80578279-80578298 None:intergenic 60.0%
TCTGTTGGGCCACCCGCTAT+CGG - chr4_1:80578837-80578856 Msa0576500:intron 60.0%
! GTGGCGACTTGGGTCTTCAC+TGG + chr4_1:80578254-80578273 None:intergenic 60.0%
AAGACCCAAGTCGCCACCTC+CGG - chr4_1:80578257-80578276 Msa0576500:CDS 60.0%
TCCAACAGCCCAAAGGACGC+CGG + chr4_1:80578279-80578298 None:intergenic 60.0%
TCTGTTGGGCCACCCGCTAT+CGG - chr4_1:80578837-80578856 Msa0576500:intron 60.0%
AACAGCCCAAAGGACGCCGG+AGG + chr4_1:80578276-80578295 None:intergenic 65.0%
TCCGGCGTCCTTTGGGCTGT+TGG - chr4_1:80578275-80578294 Msa0576500:CDS 65.0%
CTGTTGGGCCACCCGCTATC+GGG - chr4_1:80578838-80578857 Msa0576500:intron 65.0%
!! TCGCATGACCCGATAGCGGG+TGG + chr4_1:80578849-80578868 None:intergenic 65.0%
ACCCGCTATCGGGTCATGCG+AGG - chr4_1:80578848-80578867 Msa0576500:intron 65.0%
CCCTCGCATGACCCGATAGC+GGG + chr4_1:80578852-80578871 None:intergenic 65.0%
CCCGCTATCGGGTCATGCGA+GGG - chr4_1:80578849-80578868 Msa0576500:intron 65.0%
CCCCTCGCATGACCCGATAG+CGG + chr4_1:80578853-80578872 None:intergenic 65.0%
CCGCTATCGGGTCATGCGAG+GGG - chr4_1:80578850-80578869 Msa0576500:intron 65.0%
AACAGCCCAAAGGACGCCGG+AGG + chr4_1:80578276-80578295 None:intergenic 65.0%
TCCGGCGTCCTTTGGGCTGT+TGG - chr4_1:80578275-80578294 Msa0576500:CDS 65.0%
CTGTTGGGCCACCCGCTATC+GGG - chr4_1:80578838-80578857 Msa0576500:intron 65.0%
!! TCGCATGACCCGATAGCGGG+TGG + chr4_1:80578849-80578868 None:intergenic 65.0%
ACCCGCTATCGGGTCATGCG+AGG - chr4_1:80578848-80578867 Msa0576500:intron 65.0%
CCCTCGCATGACCCGATAGC+GGG + chr4_1:80578852-80578871 None:intergenic 65.0%
CCCGCTATCGGGTCATGCGA+GGG - chr4_1:80578849-80578868 Msa0576500:intron 65.0%
CCCCTCGCATGACCCGATAG+CGG + chr4_1:80578853-80578872 None:intergenic 65.0%
CCGCTATCGGGTCATGCGAG+GGG - chr4_1:80578850-80578869 Msa0576500:intron 65.0%
GACGCCGGAGGTGGCGACTT+GGG + chr4_1:80578264-80578283 None:intergenic 70.0%
TCGCCACCTCCGGCGTCCTT+TGG - chr4_1:80578267-80578286 Msa0576500:CDS 70.0%
CGCCACCTCCGGCGTCCTTT+GGG - chr4_1:80578268-80578287 Msa0576500:CDS 70.0%
AGCCCAAAGGACGCCGGAGG+TGG + chr4_1:80578273-80578292 None:intergenic 70.0%
GACGCCGGAGGTGGCGACTT+GGG + chr4_1:80578264-80578283 None:intergenic 70.0%
TCGCCACCTCCGGCGTCCTT+TGG - chr4_1:80578267-80578286 Msa0576500:CDS 70.0%
CGCCACCTCCGGCGTCCTTT+GGG - chr4_1:80578268-80578287 Msa0576500:CDS 70.0%
AGCCCAAAGGACGCCGGAGG+TGG + chr4_1:80578273-80578292 None:intergenic 70.0%
GGACGCCGGAGGTGGCGACT+TGG + chr4_1:80578265-80578284 None:intergenic 75.0%
GGACGCCGGAGGTGGCGACT+TGG + chr4_1:80578265-80578284 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80577924 80579748 80577924 ID=Msa0576500;Name=Msa0576500
chr4_1 mRNA 80577924 80579748 80577924 ID=Msa0576500-mRNA-1;Parent=Msa0576500;Name=Msa0576500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=273|1|1|1|1|1|3|231|224
chr4_1 exon 80577924 80578557 80577924 ID=Msa0576500-mRNA-1:exon:28851;Parent=Msa0576500-mRNA-1
chr4_1 exon 80579107 80579204 80579107 ID=Msa0576500-mRNA-1:exon:28850;Parent=Msa0576500-mRNA-1
chr4_1 exon 80579302 80579748 80579302 ID=Msa0576500-mRNA-1:exon:28849;Parent=Msa0576500-mRNA-1
chr4_1 five_prime_UTR 80579476 80579748 80579476 ID=Msa0576500-mRNA-1:five_prime_utr;Parent=Msa0576500-mRNA-1
chr4_1 CDS 80579302 80579475 80579302 ID=Msa0576500-mRNA-1:cds;Parent=Msa0576500-mRNA-1
chr4_1 CDS 80579107 80579204 80579107 ID=Msa0576500-mRNA-1:cds;Parent=Msa0576500-mRNA-1
chr4_1 CDS 80578155 80578557 80578155 ID=Msa0576500-mRNA-1:cds;Parent=Msa0576500-mRNA-1
chr4_1 three_prime_UTR 80577924 80578154 80577924 ID=Msa0576500-mRNA-1:three_prime_utr;Parent=Msa0576500-mRNA-1
Gene Sequence

>Msa0576500

ATGTCGATGATATTGAAGGCATGGAATTGGTATCAGAATAGCCTCTCAATTCATCCAGTGAAGACCCAAGTCGCCACCTCCGGCGTCCTTTGGGCTGTTGGAGATGTCACTGCTCAGTACATCACTCACTCAGCGTCAGCATCTTCTAAAAAACGTCTTCAATTATCTGCCACTGAAGAAGCAACAGATGATAAATTTGTCATCGATTGGAGACGTGTTGCTGTTACTAGTATGTTTGGAATTGGTTTTGTTGGTCCAGTTGGCCATTTCTGGTATGAAGGCTTGGAAAAATTCATAAGTCACAAGCTTCATCTAATGCCACAAACTGCACGATCCGTAGCTACAAAAGTTGCAATGGACGGCTTGATTTTCGGTCCGGTGCATTTGTTTGTTTTCTTTACTTACATGGGATTGTCTGCTGGAAAGACTATTCCTGAGGTGAAGGAAGACTTGAAGAGGAATTATTTCCCAGCCTTGGTTTTAGAAGGTGGTGTGTGGCCAATTGTGCAGGTTTTTAATTTTCGGTATGTTCCTGTCAAGTACCAGCTTCTGTATGTAAACCTGTTCTGCTTGCTGGATAGTGCTTTCTTGTCTTGGTTGGAGCAACAGAAAGATGCAGCTTGGAAACAATGGTTTCAACCATTTCATTCTTCAAATGGAAAAGGTGGTCAATGA

Protein sequence

>Msa0576500

MSMILKAWNWYQNSLSIHPVKTQVATSGVLWAVGDVTAQYITHSASASSKKRLQLSATEEATDDKFVIDWRRVAVTSMFGIGFVGPVGHFWYEGLEKFISHKLHLMPQTARSVATKVAMDGLIFGPVHLFVFFTYMGLSAGKTIPEVKEDLKRNYFPALVLEGGVWPIVQVFNFRYVPVKYQLLYVNLFCLLDSAFLSWLEQQKDAAWKQWFQPFHSSNGKGGQ*