AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0707880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707880 MtrunA17_Chr8g0390511 93.363 226 12 2 1 224 1 225 6.85e-154 426
Msa0707880 MtrunA17_Chr1g0147191 60.748 214 78 2 4 215 1 210 2.86e-100 290
Msa0707880 MtrunA17_Chr6g0465041 28.141 199 112 3 10 205 55 225 6.52e-22 90.1
Msa0707880 MtrunA17_Chr1g0187331 28.571 182 103 4 7 187 8 163 2.37e-17 77.0
Msa0707880 MtrunA17_Chr7g0255351 26.178 191 114 4 9 199 88 251 2.37e-16 75.5
Msa0707880 MtrunA17_Chr1g0207521 24.747 198 122 3 10 206 84 255 3.94e-15 72.4
Msa0707880 MtrunA17_Chr2g0288811 24.607 191 117 4 9 198 10 174 5.72e-13 65.1
Msa0707880 MtrunA17_Chr2g0324001 25.490 204 123 5 9 209 122 299 4.84e-11 61.2
Msa0707880 MtrunA17_Chr2g0318131 24.631 203 128 3 5 207 174 351 6.35e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0707880 AT3G24570.1 61.864 236 72 3 4 223 1 234 3.28e-106 306
Msa0707880 AT3G24570.2 56.780 236 71 4 4 223 1 221 2.67e-92 270
Msa0707880 AT5G43140.1 29.000 200 111 4 10 206 81 252 4.70e-20 85.9
Msa0707880 AT4G04470.1 28.571 189 108 4 11 198 14 176 5.76e-18 79.0
Msa0707880 AT4G04470.2 28.571 189 108 4 11 198 14 176 5.76e-18 79.0
Msa0707880 AT4G14305.1 29.016 193 110 4 7 198 8 174 1.72e-17 77.4
Msa0707880 AT5G19750.1 26.633 199 119 3 9 207 116 287 1.60e-15 73.9
Msa0707880 AT2G14860.1 24.103 195 123 2 10 204 76 245 4.23e-15 72.4
Msa0707880 AT4G33905.1 22.680 194 125 3 10 203 85 253 1.03e-12 65.9
Msa0707880 AT4G14305.2 28.409 176 97 6 25 198 14 162 2.60e-11 60.5
Msa0707880 AT1G52870.2 26.368 201 121 4 8 207 170 344 6.17e-11 61.6
Msa0707880 AT2G42770.1 27.273 187 115 6 19 198 55 227 8.95e-11 60.1

Find 71 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTCCAGTTGGCCATTTC+TGG 0.094401 4_4:+81308296 Msa0707880:CDS
GGATTAGATATTATTCATTT+TGG 0.150294 4_4:-81307729 None:intergenic
TCGCCACCTCCGGCGTCCTT+TGG 0.232906 4_4:+81308025 Msa0707880:CDS
CGCCACCTCCGGCGTCCTTT+GGG 0.300937 4_4:+81308026 Msa0707880:CDS
TTATCGTATTAATCTGGATT+TGG 0.308579 4_4:-81307835 None:intergenic
AAAACGAAATTTAAAAGTTA+AGG 0.324741 4_4:+81307702 Msa0707880:five_prime_UTR
TGTAAACCTGTTCTGCTTGC+TGG 0.334368 4_4:+81309137 Msa0707880:CDS
TGTCTCTTATCGTATTAATC+TGG 0.342115 4_4:-81307841 None:intergenic
CAACCATTTCATTCTTCAAA+TGG 0.346801 4_4:+81309219 Msa0707880:CDS
ATTAAAATTGAAGAACATCT+TGG 0.355071 4_4:-81309369 None:intergenic
TCCGGCGTCCTTTGGGCTGT+TGG 0.355440 4_4:+81308033 Msa0707880:CDS
TTAAAATTGAAGAACATCTT+GGG 0.371624 4_4:-81309368 None:intergenic
TGGATAGTGCTTTCTTGTCT+TGG 0.372265 4_4:+81309157 Msa0707880:CDS
CGTGTTTCTCTGTCTACTGT+TGG 0.376956 4_4:-81307750 None:intergenic
CACTATCCAGCAAGCAGAAC+AGG 0.391334 4_4:-81309143 None:intergenic
GTTACTAGTATGTTTGGAAT+TGG 0.394362 4_4:+81308268 Msa0707880:CDS
AAAACAAAACATACCAGAAA+TGG 0.405002 4_4:-81308309 None:intergenic
CGTATTAATCTGGATTTGGT+TGG 0.407763 4_4:-81307831 None:intergenic
GTTGCTGTTACTAGTATGTT+TGG 0.411075 4_4:+81308262 Msa0707880:CDS
GTATTAATCTGGATTTGGTT+GGG 0.414120 4_4:-81307830 None:intergenic
TGATATTGAAGGCATGGAAT+TGG 0.416123 4_4:+81307962 Msa0707880:CDS
TTTCCATTTGAAGAATGAAA+TGG 0.417993 4_4:-81309222 None:intergenic
TAATACGATAAGAGACAGTT+AGG 0.423553 4_4:+81307847 Msa0707880:five_prime_UTR
TAGTGCTTTCTTGTCTTGGT+TGG 0.424910 4_4:+81309161 Msa0707880:CDS
ACTCAGTAATTAATTAATAG+TGG 0.430643 4_4:+81309465 Msa0707880:three_prime_UTR
CCACCTTCTAAAACCAAGGC+TGG 0.437288 4_4:-81309051 None:intergenic
GTCAATGATGATGAAGATAC+TGG 0.437620 4_4:+81309250 Msa0707880:exon
TTTCATTCTTCAAATGGAAA+AGG 0.437632 4_4:+81309225 Msa0707880:CDS
CTCTTGTAGGTATGAAGGCT+TGG 0.440685 4_4:+81308846 Msa0707880:intron
ATTGTAATAGATAGATTCAT+AGG 0.441979 4_4:+81309321 Msa0707880:three_prime_UTR
GAGGAATTATTTCCCAGCCT+TGG 0.443185 4_4:+81309038 Msa0707880:CDS
ACTTACATGGGATTGTCTGC+TGG 0.443240 4_4:+81308982 Msa0707880:CDS
TTCATCTCTTGTAGGTATGA+AGG 0.445708 4_4:+81308841 Msa0707880:intron
GTGGCGACTTGGGTCTTCAC+TGG 0.448316 4_4:-81308009 None:intergenic
TTCAAGTCTTCCTTCACCTC+AGG 0.449281 4_4:-81309015 None:intergenic
ATGATAAATTTGTCATCGAT+TGG 0.450538 4_4:+81308233 Msa0707880:CDS
AGCCCAAAGGACGCCGGAGG+TGG 0.459956 4_4:-81308028 None:intergenic
AAAGATGTCGATGATATTGA+AGG 0.473579 4_4:+81307951 Msa0707880:exon
GACGCCGGAGGTGGCGACTT+GGG 0.475559 4_4:-81308019 None:intergenic
GCTACGGATCGTGCAGTTTG+TGG 0.477640 4_4:-81308901 None:intergenic
TGGTGTGTGGCCAATTGTGC+AGG 0.479891 4_4:+81309071 Msa0707880:CDS
AAGACCCAAGTCGCCACCTC+CGG 0.484846 4_4:+81308015 Msa0707880:CDS
ACATACCAGAAATGGCCAAC+TGG 0.486779 4_4:-81308301 None:intergenic
TACAATTTCTAAAACATCAC+AGG 0.499099 4_4:-81309304 None:intergenic
GGACGCCGGAGGTGGCGACT+TGG 0.499705 4_4:-81308020 None:intergenic
CGAAATTCTGTGCATGTGTA+TGG 0.503898 4_4:-81309441 None:intergenic
CATTCTTCAAATGGAAAAGG+TGG 0.505391 4_4:+81309228 Msa0707880:CDS
TACAGAAGCTGGTACTTGAC+AGG 0.517117 4_4:-81309114 None:intergenic
TAAAATTGAAGAACATCTTG+GGG 0.539160 4_4:-81309367 None:intergenic
AGCAACAGAAAGATGCAGCT+TGG 0.545356 4_4:+81309184 Msa0707880:CDS
ATAACTAATTGCCGAGGACG+TGG 0.546264 4_4:-81307873 None:intergenic
AAAGACTATTCCTGAGGTGA+AGG 0.559012 4_4:+81309005 Msa0707880:CDS
ACAGGTTTACATACAGAAGC+TGG 0.562212 4_4:-81309125 None:intergenic
TGTCGATGATATTGAAGGCA+TGG 0.565785 4_4:+81307956 Msa0707880:CDS
CAGTTAGGTTCCCACGTCCT+CGG 0.576952 4_4:+81307862 Msa0707880:five_prime_UTR
AAGATGCAGCTTGGAAACAA+TGG 0.578706 4_4:+81309193 Msa0707880:CDS
CACACCACCTTCTAAAACCA+AGG 0.583928 4_4:-81309055 None:intergenic
CACCTTCTAAAACCAAGGCT+GGG 0.586216 4_4:-81309050 None:intergenic
TCCAACAGCCCAAAGGACGC+CGG 0.588788 4_4:-81308034 None:intergenic
AGGTGAAGGAAGACTTGAAG+AGG 0.593785 4_4:+81309019 Msa0707880:CDS
CGTAGCTACAAAAGTTGCAA+TGG 0.595127 4_4:+81308918 Msa0707880:CDS
AAGAAAACAAACAAATGCAC+CGG 0.610944 4_4:-81308958 None:intergenic
GCTACAAAAGTTGCAATGGA+CGG 0.615386 4_4:+81308922 Msa0707880:CDS
AACAGCCCAAAGGACGCCGG+AGG 0.618772 4_4:-81308031 None:intergenic
TAACTAATTGCCGAGGACGT+GGG 0.649745 4_4:-81307872 None:intergenic
GATGAAGATACTGGAAACAA+CGG 0.663149 4_4:+81309259 Msa0707880:three_prime_UTR
TCTTCACTGGATGAATTGAG+AGG 0.675816 4_4:-81307996 None:intergenic
TGACATCTCCAACAGCCCAA+AGG 0.677959 4_4:-81308041 None:intergenic
AAAATTGAAGAACATCTTGG+GGG 0.684075 4_4:-81309366 None:intergenic
ACAACTATAACTAATTGCCG+AGG 0.697334 4_4:-81307879 None:intergenic
TGCTGGAAAGACTATTCCTG+AGG 0.700231 4_4:+81308999 Msa0707880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAATTTAAAAGTTA+AGG + chr4_4:81307702-81307721 Msa0707880:five_prime_UTR 15.0%
!! TTTATAATATTTGTAATTGC+AGG + chr4_4:81308198-81308217 Msa0707880:intron 15.0%
!! AAAACGAAATTTAAAAGTTA+AGG + chr4_4:81307702-81307721 Msa0707880:five_prime_UTR 15.0%
!! TTTATAATATTTGTAATTGC+AGG + chr4_4:81308198-81308217 Msa0707880:intron 15.0%
!!! GGATTAGATATTATTCATTT+TGG - chr4_4:81307732-81307751 None:intergenic 20.0%
!!! TTTTCTATTCTATTCTATTC+AGG - chr4_4:81307934-81307953 None:intergenic 20.0%
!!! TTTGTTTTCTTTACTTACAT+GGG + chr4_4:81308970-81308989 Msa0707880:CDS 20.0%
!! ATTGTAATAGATAGATTCAT+AGG + chr4_4:81309321-81309340 Msa0707880:three_prime_UTR 20.0%
!! TTAAAATTGAAGAACATCTT+GGG - chr4_4:81309371-81309390 None:intergenic 20.0%
!! ATTAAAATTGAAGAACATCT+TGG - chr4_4:81309372-81309391 None:intergenic 20.0%
!!! TTCTACTCTTTTAATCTTTT+CGG - chr4_4:81309410-81309429 None:intergenic 20.0%
!! ACTCAGTAATTAATTAATAG+TGG + chr4_4:81309465-81309484 Msa0707880:three_prime_UTR 20.0%
!!! GGATTAGATATTATTCATTT+TGG - chr4_4:81307732-81307751 None:intergenic 20.0%
!!! TTTTCTATTCTATTCTATTC+AGG - chr4_4:81307934-81307953 None:intergenic 20.0%
!!! TTTGTTTTCTTTACTTACAT+GGG + chr4_4:81308970-81308989 Msa0707880:CDS 20.0%
!! ATTGTAATAGATAGATTCAT+AGG + chr4_4:81309321-81309340 Msa0707880:three_prime_UTR 20.0%
!! TTAAAATTGAAGAACATCTT+GGG - chr4_4:81309371-81309390 None:intergenic 20.0%
!! ATTAAAATTGAAGAACATCT+TGG - chr4_4:81309372-81309391 None:intergenic 20.0%
!!! TTCTACTCTTTTAATCTTTT+CGG - chr4_4:81309410-81309429 None:intergenic 20.0%
!! ACTCAGTAATTAATTAATAG+TGG + chr4_4:81309465-81309484 Msa0707880:three_prime_UTR 20.0%
! TTATCGTATTAATCTGGATT+TGG - chr4_4:81307838-81307857 None:intergenic 25.0%
! AAAGAGGGTAATATAGAAAT+GGG - chr4_4:81308149-81308168 None:intergenic 25.0%
! ATGATAAATTTGTCATCGAT+TGG + chr4_4:81308233-81308252 Msa0707880:CDS 25.0%
! AAAACAAAACATACCAGAAA+TGG - chr4_4:81308312-81308331 None:intergenic 25.0%
!! ATGCTGTTTATTTACATTAC+AGG + chr4_4:81308334-81308353 Msa0707880:intron 25.0%
!! AACTTCACATTTTTGTTCAA+AGG + chr4_4:81308407-81308426 Msa0707880:intron 25.0%
! GTCAAATATCTTATTCAATG+TGG - chr4_4:81308449-81308468 None:intergenic 25.0%
!!! ATTTACAAGCTGATTTTGTA+AGG + chr4_4:81308503-81308522 Msa0707880:intron 25.0%
!!! TTTACAAGCTGATTTTGTAA+GGG + chr4_4:81308504-81308523 Msa0707880:intron 25.0%
! ATTCAGTTTACTAAGAAGAT+TGG + chr4_4:81308735-81308754 Msa0707880:intron 25.0%
!!! GTTTGTTTTCTTTACTTACA+TGG + chr4_4:81308969-81308988 Msa0707880:CDS 25.0%
! AAATTAAAAACCTGCACAAT+TGG - chr4_4:81309084-81309103 None:intergenic 25.0%
!!! TTGTGCAGGTTTTTAATTTT+CGG + chr4_4:81309085-81309104 Msa0707880:CDS 25.0%
! TTTCCATTTGAAGAATGAAA+TGG - chr4_4:81309225-81309244 None:intergenic 25.0%
! TTTCATTCTTCAAATGGAAA+AGG + chr4_4:81309225-81309244 Msa0707880:CDS 25.0%
! TCACAGGAAAAATTATGAAA+TGG - chr4_4:81309291-81309310 None:intergenic 25.0%
!!! TACAATTTCTAAAACATCAC+AGG - chr4_4:81309307-81309326 None:intergenic 25.0%
! TAAAATTGAAGAACATCTTG+GGG - chr4_4:81309370-81309389 None:intergenic 25.0%
!! TCTACTCTTTTAATCTTTTC+GGG - chr4_4:81309409-81309428 None:intergenic 25.0%
! TTATCGTATTAATCTGGATT+TGG - chr4_4:81307838-81307857 None:intergenic 25.0%
! AAAGAGGGTAATATAGAAAT+GGG - chr4_4:81308149-81308168 None:intergenic 25.0%
! ATGATAAATTTGTCATCGAT+TGG + chr4_4:81308233-81308252 Msa0707880:CDS 25.0%
! AAAACAAAACATACCAGAAA+TGG - chr4_4:81308312-81308331 None:intergenic 25.0%
!! ATGCTGTTTATTTACATTAC+AGG + chr4_4:81308334-81308353 Msa0707880:intron 25.0%
!! AACTTCACATTTTTGTTCAA+AGG + chr4_4:81308407-81308426 Msa0707880:intron 25.0%
! GTCAAATATCTTATTCAATG+TGG - chr4_4:81308449-81308468 None:intergenic 25.0%
!!! ATTTACAAGCTGATTTTGTA+AGG + chr4_4:81308503-81308522 Msa0707880:intron 25.0%
!!! TTTACAAGCTGATTTTGTAA+GGG + chr4_4:81308504-81308523 Msa0707880:intron 25.0%
! ATTCAGTTTACTAAGAAGAT+TGG + chr4_4:81308735-81308754 Msa0707880:intron 25.0%
!!! GTTTGTTTTCTTTACTTACA+TGG + chr4_4:81308969-81308988 Msa0707880:CDS 25.0%
! AAATTAAAAACCTGCACAAT+TGG - chr4_4:81309084-81309103 None:intergenic 25.0%
!!! TTGTGCAGGTTTTTAATTTT+CGG + chr4_4:81309085-81309104 Msa0707880:CDS 25.0%
! TTTCCATTTGAAGAATGAAA+TGG - chr4_4:81309225-81309244 None:intergenic 25.0%
! TTTCATTCTTCAAATGGAAA+AGG + chr4_4:81309225-81309244 Msa0707880:CDS 25.0%
! TCACAGGAAAAATTATGAAA+TGG - chr4_4:81309291-81309310 None:intergenic 25.0%
!!! TACAATTTCTAAAACATCAC+AGG - chr4_4:81309307-81309326 None:intergenic 25.0%
! TAAAATTGAAGAACATCTTG+GGG - chr4_4:81309370-81309389 None:intergenic 25.0%
!! TCTACTCTTTTAATCTTTTC+GGG - chr4_4:81309409-81309428 None:intergenic 25.0%
! GTATTAATCTGGATTTGGTT+GGG - chr4_4:81307833-81307852 None:intergenic 30.0%
TGTCTCTTATCGTATTAATC+TGG - chr4_4:81307844-81307863 None:intergenic 30.0%
TAATACGATAAGAGACAGTT+AGG + chr4_4:81307847-81307866 Msa0707880:five_prime_UTR 30.0%
AAAGATGTCGATGATATTGA+AGG + chr4_4:81307951-81307970 Msa0707880:exon 30.0%
GAAAGAGGGTAATATAGAAA+TGG - chr4_4:81308150-81308169 None:intergenic 30.0%
! GTTACTAGTATGTTTGGAAT+TGG + chr4_4:81308268-81308287 Msa0707880:CDS 30.0%
!!! ATGTTTGGAATTGGTTTTGT+TGG + chr4_4:81308277-81308296 Msa0707880:CDS 30.0%
AGTTAACAACAATTTGACAG+AGG - chr4_4:81308391-81308410 None:intergenic 30.0%
!! CTACTTGTAAAGTCATTTTC+AGG - chr4_4:81308471-81308490 None:intergenic 30.0%
CTGAAAATGACTTTACAAGT+AGG + chr4_4:81308469-81308488 Msa0707880:intron 30.0%
AAAATCAGCTTGTAAATGAG+GGG - chr4_4:81308500-81308519 None:intergenic 30.0%
CAAAATCAGCTTGTAAATGA+GGG - chr4_4:81308501-81308520 None:intergenic 30.0%
ACAAAATCAGCTTGTAAATG+AGG - chr4_4:81308502-81308521 None:intergenic 30.0%
! GATTTTGTAAGGGTTGAATT+TGG + chr4_4:81308514-81308533 Msa0707880:intron 30.0%
CTAATACCATCTTAGAATCT+AGG - chr4_4:81308545-81308564 None:intergenic 30.0%
TTAACTCAATTCCAGAAAAC+CGG - chr4_4:81308638-81308657 None:intergenic 30.0%
! CGGTGATTTCATAAGATTTT+GGG + chr4_4:81308682-81308701 Msa0707880:intron 30.0%
! TGATTTCATAAGATTTTGGG+AGG + chr4_4:81308685-81308704 Msa0707880:intron 30.0%
!! GATTTCATAAGATTTTGGGA+GGG + chr4_4:81308686-81308705 Msa0707880:intron 30.0%
TTTGTAATTTCCTGCTACAA+AGG + chr4_4:81308788-81308807 Msa0707880:intron 30.0%
AAGAAAACAAACAAATGCAC+CGG - chr4_4:81308961-81308980 None:intergenic 30.0%
CAACCATTTCATTCTTCAAA+TGG + chr4_4:81309219-81309238 Msa0707880:CDS 30.0%
AAAATTGAAGAACATCTTGG+GGG - chr4_4:81309369-81309388 None:intergenic 30.0%
! GTATTAATCTGGATTTGGTT+GGG - chr4_4:81307833-81307852 None:intergenic 30.0%
TGTCTCTTATCGTATTAATC+TGG - chr4_4:81307844-81307863 None:intergenic 30.0%
TAATACGATAAGAGACAGTT+AGG + chr4_4:81307847-81307866 Msa0707880:five_prime_UTR 30.0%
AAAGATGTCGATGATATTGA+AGG + chr4_4:81307951-81307970 Msa0707880:exon 30.0%
GAAAGAGGGTAATATAGAAA+TGG - chr4_4:81308150-81308169 None:intergenic 30.0%
! GTTACTAGTATGTTTGGAAT+TGG + chr4_4:81308268-81308287 Msa0707880:CDS 30.0%
!!! ATGTTTGGAATTGGTTTTGT+TGG + chr4_4:81308277-81308296 Msa0707880:CDS 30.0%
AGTTAACAACAATTTGACAG+AGG - chr4_4:81308391-81308410 None:intergenic 30.0%
!! CTACTTGTAAAGTCATTTTC+AGG - chr4_4:81308471-81308490 None:intergenic 30.0%
CTGAAAATGACTTTACAAGT+AGG + chr4_4:81308469-81308488 Msa0707880:intron 30.0%
AAAATCAGCTTGTAAATGAG+GGG - chr4_4:81308500-81308519 None:intergenic 30.0%
CAAAATCAGCTTGTAAATGA+GGG - chr4_4:81308501-81308520 None:intergenic 30.0%
ACAAAATCAGCTTGTAAATG+AGG - chr4_4:81308502-81308521 None:intergenic 30.0%
! GATTTTGTAAGGGTTGAATT+TGG + chr4_4:81308514-81308533 Msa0707880:intron 30.0%
CTAATACCATCTTAGAATCT+AGG - chr4_4:81308545-81308564 None:intergenic 30.0%
TTAACTCAATTCCAGAAAAC+CGG - chr4_4:81308638-81308657 None:intergenic 30.0%
! CGGTGATTTCATAAGATTTT+GGG + chr4_4:81308682-81308701 Msa0707880:intron 30.0%
! TGATTTCATAAGATTTTGGG+AGG + chr4_4:81308685-81308704 Msa0707880:intron 30.0%
!! GATTTCATAAGATTTTGGGA+GGG + chr4_4:81308686-81308705 Msa0707880:intron 30.0%
TTTGTAATTTCCTGCTACAA+AGG + chr4_4:81308788-81308807 Msa0707880:intron 30.0%
AAGAAAACAAACAAATGCAC+CGG - chr4_4:81308961-81308980 None:intergenic 30.0%
CAACCATTTCATTCTTCAAA+TGG + chr4_4:81309219-81309238 Msa0707880:CDS 30.0%
AAAATTGAAGAACATCTTGG+GGG - chr4_4:81309369-81309388 None:intergenic 30.0%
! CGTATTAATCTGGATTTGGT+TGG - chr4_4:81307834-81307853 None:intergenic 35.0%
ACAACTATAACTAATTGCCG+AGG - chr4_4:81307882-81307901 None:intergenic 35.0%
! TGATATTGAAGGCATGGAAT+TGG + chr4_4:81307962-81307981 Msa0707880:CDS 35.0%
GTATCGTTAAAGACATACAG+TGG - chr4_4:81308127-81308146 None:intergenic 35.0%
! GTTGCTGTTACTAGTATGTT+TGG + chr4_4:81308262-81308281 Msa0707880:CDS 35.0%
AGAACCTATACAAAGTCTGT+TGG + chr4_4:81308563-81308582 Msa0707880:intron 35.0%
GAACCTATACAAAGTCTGTT+GGG + chr4_4:81308564-81308583 Msa0707880:intron 35.0%
!! AACCCAAATTCTAAGACTAG+CGG + chr4_4:81308662-81308681 Msa0707880:intron 35.0%
! GCGGTGATTTCATAAGATTT+TGG + chr4_4:81308681-81308700 Msa0707880:intron 35.0%
TCATACAAATCCTTTGTAGC+AGG - chr4_4:81308801-81308820 None:intergenic 35.0%
TTCATACCTACAAGAGATGA+AGG - chr4_4:81308842-81308861 None:intergenic 35.0%
TTCATCTCTTGTAGGTATGA+AGG + chr4_4:81308841-81308860 Msa0707880:intron 35.0%
! CATTGCAACTTTTGTAGCTA+CGG - chr4_4:81308920-81308939 None:intergenic 35.0%
CATTCTTCAAATGGAAAAGG+TGG + chr4_4:81309228-81309247 Msa0707880:CDS 35.0%
! GTCAATGATGATGAAGATAC+TGG + chr4_4:81309250-81309269 Msa0707880:exon 35.0%
GATGAAGATACTGGAAACAA+CGG + chr4_4:81309259-81309278 Msa0707880:three_prime_UTR 35.0%
! CGTATTAATCTGGATTTGGT+TGG - chr4_4:81307834-81307853 None:intergenic 35.0%
ACAACTATAACTAATTGCCG+AGG - chr4_4:81307882-81307901 None:intergenic 35.0%
! TGATATTGAAGGCATGGAAT+TGG + chr4_4:81307962-81307981 Msa0707880:CDS 35.0%
GTATCGTTAAAGACATACAG+TGG - chr4_4:81308127-81308146 None:intergenic 35.0%
! GTTGCTGTTACTAGTATGTT+TGG + chr4_4:81308262-81308281 Msa0707880:CDS 35.0%
AGAACCTATACAAAGTCTGT+TGG + chr4_4:81308563-81308582 Msa0707880:intron 35.0%
GAACCTATACAAAGTCTGTT+GGG + chr4_4:81308564-81308583 Msa0707880:intron 35.0%
!! AACCCAAATTCTAAGACTAG+CGG + chr4_4:81308662-81308681 Msa0707880:intron 35.0%
! GCGGTGATTTCATAAGATTT+TGG + chr4_4:81308681-81308700 Msa0707880:intron 35.0%
TCATACAAATCCTTTGTAGC+AGG - chr4_4:81308801-81308820 None:intergenic 35.0%
TTCATACCTACAAGAGATGA+AGG - chr4_4:81308842-81308861 None:intergenic 35.0%
TTCATCTCTTGTAGGTATGA+AGG + chr4_4:81308841-81308860 Msa0707880:intron 35.0%
! CATTGCAACTTTTGTAGCTA+CGG - chr4_4:81308920-81308939 None:intergenic 35.0%
CATTCTTCAAATGGAAAAGG+TGG + chr4_4:81309228-81309247 Msa0707880:CDS 35.0%
! GTCAATGATGATGAAGATAC+TGG + chr4_4:81309250-81309269 Msa0707880:exon 35.0%
GATGAAGATACTGGAAACAA+CGG + chr4_4:81309259-81309278 Msa0707880:three_prime_UTR 35.0%
TGTCGATGATATTGAAGGCA+TGG + chr4_4:81307956-81307975 Msa0707880:CDS 40.0%
TCTTCACTGGATGAATTGAG+AGG - chr4_4:81307999-81308018 None:intergenic 40.0%
!!! ATTGGTTTTGTTGGTCCAGT+TGG + chr4_4:81308286-81308305 Msa0707880:CDS 40.0%
! GCTCAACCTAGATTCTAAGA+TGG + chr4_4:81308536-81308555 Msa0707880:intron 40.0%
GATTCCTTCATCTTACAAGC+CGG + chr4_4:81308616-81308635 Msa0707880:intron 40.0%
!! AAAACCGGCTTGTAAGATGA+AGG - chr4_4:81308623-81308642 None:intergenic 40.0%
!! CACCGCTAGTCTTAGAATTT+GGG - chr4_4:81308667-81308686 None:intergenic 40.0%
!! TCACCGCTAGTCTTAGAATT+TGG - chr4_4:81308668-81308687 None:intergenic 40.0%
AACCAACCTTCATCTCTTGT+AGG + chr4_4:81308833-81308852 Msa0707880:intron 40.0%
TACCTACAAGAGATGAAGGT+TGG - chr4_4:81308838-81308857 None:intergenic 40.0%
CGTAGCTACAAAAGTTGCAA+TGG + chr4_4:81308918-81308937 Msa0707880:CDS 40.0%
GCTACAAAAGTTGCAATGGA+CGG + chr4_4:81308922-81308941 Msa0707880:CDS 40.0%
AAAGACTATTCCTGAGGTGA+AGG + chr4_4:81309005-81309024 Msa0707880:CDS 40.0%
ACAGGTTTACATACAGAAGC+TGG - chr4_4:81309128-81309147 None:intergenic 40.0%
TGGATAGTGCTTTCTTGTCT+TGG + chr4_4:81309157-81309176 Msa0707880:CDS 40.0%
TAGTGCTTTCTTGTCTTGGT+TGG + chr4_4:81309161-81309180 Msa0707880:CDS 40.0%
AAGATGCAGCTTGGAAACAA+TGG + chr4_4:81309193-81309212 Msa0707880:CDS 40.0%
CGAAATTCTGTGCATGTGTA+TGG - chr4_4:81309444-81309463 None:intergenic 40.0%
TGTCGATGATATTGAAGGCA+TGG + chr4_4:81307956-81307975 Msa0707880:CDS 40.0%
TCTTCACTGGATGAATTGAG+AGG - chr4_4:81307999-81308018 None:intergenic 40.0%
!!! ATTGGTTTTGTTGGTCCAGT+TGG + chr4_4:81308286-81308305 Msa0707880:CDS 40.0%
! GCTCAACCTAGATTCTAAGA+TGG + chr4_4:81308536-81308555 Msa0707880:intron 40.0%
GATTCCTTCATCTTACAAGC+CGG + chr4_4:81308616-81308635 Msa0707880:intron 40.0%
!! AAAACCGGCTTGTAAGATGA+AGG - chr4_4:81308623-81308642 None:intergenic 40.0%
!! CACCGCTAGTCTTAGAATTT+GGG - chr4_4:81308667-81308686 None:intergenic 40.0%
!! TCACCGCTAGTCTTAGAATT+TGG - chr4_4:81308668-81308687 None:intergenic 40.0%
AACCAACCTTCATCTCTTGT+AGG + chr4_4:81308833-81308852 Msa0707880:intron 40.0%
TACCTACAAGAGATGAAGGT+TGG - chr4_4:81308838-81308857 None:intergenic 40.0%
CGTAGCTACAAAAGTTGCAA+TGG + chr4_4:81308918-81308937 Msa0707880:CDS 40.0%
GCTACAAAAGTTGCAATGGA+CGG + chr4_4:81308922-81308941 Msa0707880:CDS 40.0%
AAAGACTATTCCTGAGGTGA+AGG + chr4_4:81309005-81309024 Msa0707880:CDS 40.0%
ACAGGTTTACATACAGAAGC+TGG - chr4_4:81309128-81309147 None:intergenic 40.0%
TGGATAGTGCTTTCTTGTCT+TGG + chr4_4:81309157-81309176 Msa0707880:CDS 40.0%
TAGTGCTTTCTTGTCTTGGT+TGG + chr4_4:81309161-81309180 Msa0707880:CDS 40.0%
AAGATGCAGCTTGGAAACAA+TGG + chr4_4:81309193-81309212 Msa0707880:CDS 40.0%
CGAAATTCTGTGCATGTGTA+TGG - chr4_4:81309444-81309463 None:intergenic 40.0%
CGTGTTTCTCTGTCTACTGT+TGG - chr4_4:81307753-81307772 None:intergenic 45.0%
TAACTAATTGCCGAGGACGT+GGG - chr4_4:81307875-81307894 None:intergenic 45.0%
ATAACTAATTGCCGAGGACG+TGG - chr4_4:81307876-81307895 None:intergenic 45.0%
GAGAGAGAGAGACAGAAAGA+GGG - chr4_4:81308164-81308183 None:intergenic 45.0%
AGAGAGAGAGAGACAGAAAG+AGG - chr4_4:81308165-81308184 None:intergenic 45.0%
ACATACCAGAAATGGCCAAC+TGG - chr4_4:81308304-81308323 None:intergenic 45.0%
TGGCCCAACAGACTTTGTAT+AGG - chr4_4:81308570-81308589 None:intergenic 45.0%
!! CATCTTACAAGCCGGTTTTC+TGG + chr4_4:81308624-81308643 Msa0707880:intron 45.0%
CTCTTGTAGGTATGAAGGCT+TGG + chr4_4:81308846-81308865 Msa0707880:intron 45.0%
! GCAATGGACGGCTTGATTTT+CGG + chr4_4:81308934-81308953 Msa0707880:CDS 45.0%
ACTTACATGGGATTGTCTGC+TGG + chr4_4:81308982-81309001 Msa0707880:CDS 45.0%
TGCTGGAAAGACTATTCCTG+AGG + chr4_4:81308999-81309018 Msa0707880:CDS 45.0%
TTCAAGTCTTCCTTCACCTC+AGG - chr4_4:81309018-81309037 None:intergenic 45.0%
AGGTGAAGGAAGACTTGAAG+AGG + chr4_4:81309019-81309038 Msa0707880:CDS 45.0%
GAGGAATTATTTCCCAGCCT+TGG + chr4_4:81309038-81309057 Msa0707880:CDS 45.0%
!!! TTCCCAGCCTTGGTTTTAGA+AGG + chr4_4:81309048-81309067 Msa0707880:CDS 45.0%
!! CACCTTCTAAAACCAAGGCT+GGG - chr4_4:81309053-81309072 None:intergenic 45.0%
!! CACACCACCTTCTAAAACCA+AGG - chr4_4:81309058-81309077 None:intergenic 45.0%
!!! TGGTTTTAGAAGGTGGTGTG+TGG + chr4_4:81309058-81309077 Msa0707880:CDS 45.0%
TACAGAAGCTGGTACTTGAC+AGG - chr4_4:81309117-81309136 None:intergenic 45.0%
TGTAAACCTGTTCTGCTTGC+TGG + chr4_4:81309137-81309156 Msa0707880:CDS 45.0%
AGCAACAGAAAGATGCAGCT+TGG + chr4_4:81309184-81309203 Msa0707880:CDS 45.0%
CGTGTTTCTCTGTCTACTGT+TGG - chr4_4:81307753-81307772 None:intergenic 45.0%
TAACTAATTGCCGAGGACGT+GGG - chr4_4:81307875-81307894 None:intergenic 45.0%
ATAACTAATTGCCGAGGACG+TGG - chr4_4:81307876-81307895 None:intergenic 45.0%
GAGAGAGAGAGACAGAAAGA+GGG - chr4_4:81308164-81308183 None:intergenic 45.0%
AGAGAGAGAGAGACAGAAAG+AGG - chr4_4:81308165-81308184 None:intergenic 45.0%
ACATACCAGAAATGGCCAAC+TGG - chr4_4:81308304-81308323 None:intergenic 45.0%
TGGCCCAACAGACTTTGTAT+AGG - chr4_4:81308570-81308589 None:intergenic 45.0%
!! CATCTTACAAGCCGGTTTTC+TGG + chr4_4:81308624-81308643 Msa0707880:intron 45.0%
CTCTTGTAGGTATGAAGGCT+TGG + chr4_4:81308846-81308865 Msa0707880:intron 45.0%
! GCAATGGACGGCTTGATTTT+CGG + chr4_4:81308934-81308953 Msa0707880:CDS 45.0%
ACTTACATGGGATTGTCTGC+TGG + chr4_4:81308982-81309001 Msa0707880:CDS 45.0%
TGCTGGAAAGACTATTCCTG+AGG + chr4_4:81308999-81309018 Msa0707880:CDS 45.0%
TTCAAGTCTTCCTTCACCTC+AGG - chr4_4:81309018-81309037 None:intergenic 45.0%
AGGTGAAGGAAGACTTGAAG+AGG + chr4_4:81309019-81309038 Msa0707880:CDS 45.0%
GAGGAATTATTTCCCAGCCT+TGG + chr4_4:81309038-81309057 Msa0707880:CDS 45.0%
!!! TTCCCAGCCTTGGTTTTAGA+AGG + chr4_4:81309048-81309067 Msa0707880:CDS 45.0%
!! CACCTTCTAAAACCAAGGCT+GGG - chr4_4:81309053-81309072 None:intergenic 45.0%
!! CACACCACCTTCTAAAACCA+AGG - chr4_4:81309058-81309077 None:intergenic 45.0%
!!! TGGTTTTAGAAGGTGGTGTG+TGG + chr4_4:81309058-81309077 Msa0707880:CDS 45.0%
TACAGAAGCTGGTACTTGAC+AGG - chr4_4:81309117-81309136 None:intergenic 45.0%
TGTAAACCTGTTCTGCTTGC+TGG + chr4_4:81309137-81309156 Msa0707880:CDS 45.0%
AGCAACAGAAAGATGCAGCT+TGG + chr4_4:81309184-81309203 Msa0707880:CDS 45.0%
TGACATCTCCAACAGCCCAA+AGG - chr4_4:81308044-81308063 None:intergenic 50.0%
TTGGTCCAGTTGGCCATTTC+TGG + chr4_4:81308296-81308315 Msa0707880:CDS 50.0%
!! CCACCTTCTAAAACCAAGGC+TGG - chr4_4:81309054-81309073 None:intergenic 50.0%
!!! CCAGCCTTGGTTTTAGAAGG+TGG + chr4_4:81309051-81309070 Msa0707880:CDS 50.0%
CACTATCCAGCAAGCAGAAC+AGG - chr4_4:81309146-81309165 None:intergenic 50.0%
TGACATCTCCAACAGCCCAA+AGG - chr4_4:81308044-81308063 None:intergenic 50.0%
TTGGTCCAGTTGGCCATTTC+TGG + chr4_4:81308296-81308315 Msa0707880:CDS 50.0%
!! CCACCTTCTAAAACCAAGGC+TGG - chr4_4:81309054-81309073 None:intergenic 50.0%
!!! CCAGCCTTGGTTTTAGAAGG+TGG + chr4_4:81309051-81309070 Msa0707880:CDS 50.0%
CACTATCCAGCAAGCAGAAC+AGG - chr4_4:81309146-81309165 None:intergenic 50.0%
CAGTTAGGTTCCCACGTCCT+CGG + chr4_4:81307862-81307881 Msa0707880:five_prime_UTR 55.0%
! TGGGAGGGTTCTGCTTTGAG+AGG + chr4_4:81308701-81308720 Msa0707880:intron 55.0%
!! GGGAGGGTTCTGCTTTGAGA+GGG + chr4_4:81308702-81308721 Msa0707880:intron 55.0%
GCTACGGATCGTGCAGTTTG+TGG - chr4_4:81308904-81308923 None:intergenic 55.0%
! GGACGGCTTGATTTTCGGTC+CGG + chr4_4:81308939-81308958 Msa0707880:CDS 55.0%
TGGTGTGTGGCCAATTGTGC+AGG + chr4_4:81309071-81309090 Msa0707880:CDS 55.0%
CAGTTAGGTTCCCACGTCCT+CGG + chr4_4:81307862-81307881 Msa0707880:five_prime_UTR 55.0%
! TGGGAGGGTTCTGCTTTGAG+AGG + chr4_4:81308701-81308720 Msa0707880:intron 55.0%
!! GGGAGGGTTCTGCTTTGAGA+GGG + chr4_4:81308702-81308721 Msa0707880:intron 55.0%
GCTACGGATCGTGCAGTTTG+TGG - chr4_4:81308904-81308923 None:intergenic 55.0%
! GGACGGCTTGATTTTCGGTC+CGG + chr4_4:81308939-81308958 Msa0707880:CDS 55.0%
TGGTGTGTGGCCAATTGTGC+AGG + chr4_4:81309071-81309090 Msa0707880:CDS 55.0%
! GTGGCGACTTGGGTCTTCAC+TGG - chr4_4:81308012-81308031 None:intergenic 60.0%
AAGACCCAAGTCGCCACCTC+CGG + chr4_4:81308015-81308034 Msa0707880:CDS 60.0%
TCCAACAGCCCAAAGGACGC+CGG - chr4_4:81308037-81308056 None:intergenic 60.0%
TCTGTTGGGCCACCCGCTAT+CGG + chr4_4:81308578-81308597 Msa0707880:intron 60.0%
! GTGGCGACTTGGGTCTTCAC+TGG - chr4_4:81308012-81308031 None:intergenic 60.0%
AAGACCCAAGTCGCCACCTC+CGG + chr4_4:81308015-81308034 Msa0707880:CDS 60.0%
TCCAACAGCCCAAAGGACGC+CGG - chr4_4:81308037-81308056 None:intergenic 60.0%
TCTGTTGGGCCACCCGCTAT+CGG + chr4_4:81308578-81308597 Msa0707880:intron 60.0%
AACAGCCCAAAGGACGCCGG+AGG - chr4_4:81308034-81308053 None:intergenic 65.0%
TCCGGCGTCCTTTGGGCTGT+TGG + chr4_4:81308033-81308052 Msa0707880:CDS 65.0%
CTGTTGGGCCACCCGCTATC+GGG + chr4_4:81308579-81308598 Msa0707880:intron 65.0%
!! TCGCATGACCCGATAGCGGG+TGG - chr4_4:81308590-81308609 None:intergenic 65.0%
ACCCGCTATCGGGTCATGCG+AGG + chr4_4:81308589-81308608 Msa0707880:intron 65.0%
CCCTCGCATGACCCGATAGC+GGG - chr4_4:81308593-81308612 None:intergenic 65.0%
CCCGCTATCGGGTCATGCGA+GGG + chr4_4:81308590-81308609 Msa0707880:intron 65.0%
CCCCTCGCATGACCCGATAG+CGG - chr4_4:81308594-81308613 None:intergenic 65.0%
CCGCTATCGGGTCATGCGAG+GGG + chr4_4:81308591-81308610 Msa0707880:intron 65.0%
AACAGCCCAAAGGACGCCGG+AGG - chr4_4:81308034-81308053 None:intergenic 65.0%
TCCGGCGTCCTTTGGGCTGT+TGG + chr4_4:81308033-81308052 Msa0707880:CDS 65.0%
CTGTTGGGCCACCCGCTATC+GGG + chr4_4:81308579-81308598 Msa0707880:intron 65.0%
!! TCGCATGACCCGATAGCGGG+TGG - chr4_4:81308590-81308609 None:intergenic 65.0%
ACCCGCTATCGGGTCATGCG+AGG + chr4_4:81308589-81308608 Msa0707880:intron 65.0%
CCCTCGCATGACCCGATAGC+GGG - chr4_4:81308593-81308612 None:intergenic 65.0%
CCCGCTATCGGGTCATGCGA+GGG + chr4_4:81308590-81308609 Msa0707880:intron 65.0%
CCCCTCGCATGACCCGATAG+CGG - chr4_4:81308594-81308613 None:intergenic 65.0%
CCGCTATCGGGTCATGCGAG+GGG + chr4_4:81308591-81308610 Msa0707880:intron 65.0%
GACGCCGGAGGTGGCGACTT+GGG - chr4_4:81308022-81308041 None:intergenic 70.0%
TCGCCACCTCCGGCGTCCTT+TGG + chr4_4:81308025-81308044 Msa0707880:CDS 70.0%
CGCCACCTCCGGCGTCCTTT+GGG + chr4_4:81308026-81308045 Msa0707880:CDS 70.0%
AGCCCAAAGGACGCCGGAGG+TGG - chr4_4:81308031-81308050 None:intergenic 70.0%
GACGCCGGAGGTGGCGACTT+GGG - chr4_4:81308022-81308041 None:intergenic 70.0%
TCGCCACCTCCGGCGTCCTT+TGG + chr4_4:81308025-81308044 Msa0707880:CDS 70.0%
CGCCACCTCCGGCGTCCTTT+GGG + chr4_4:81308026-81308045 Msa0707880:CDS 70.0%
AGCCCAAAGGACGCCGGAGG+TGG - chr4_4:81308031-81308050 None:intergenic 70.0%
GGACGCCGGAGGTGGCGACT+TGG - chr4_4:81308023-81308042 None:intergenic 75.0%
GGACGCCGGAGGTGGCGACT+TGG - chr4_4:81308023-81308042 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 81307690 81309488 81307690 ID=Msa0707880;Name=Msa0707880
chr4_4 mRNA 81307690 81309488 81307690 ID=Msa0707880-mRNA-1;Parent=Msa0707880;Name=Msa0707880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=265|1|1|1|1|1|3|231|224
chr4_4 exon 81307690 81308128 81307690 ID=Msa0707880-mRNA-1:exon:26603;Parent=Msa0707880-mRNA-1
chr4_4 exon 81308220 81308317 81308220 ID=Msa0707880-mRNA-1:exon:26604;Parent=Msa0707880-mRNA-1
chr4_4 exon 81308855 81309488 81308855 ID=Msa0707880-mRNA-1:exon:26605;Parent=Msa0707880-mRNA-1
chr4_4 five_prime_UTR 81307690 81307954 81307690 ID=Msa0707880-mRNA-1:five_prime_utr;Parent=Msa0707880-mRNA-1
chr4_4 CDS 81307955 81308128 81307955 ID=Msa0707880-mRNA-1:cds;Parent=Msa0707880-mRNA-1
chr4_4 CDS 81308220 81308317 81308220 ID=Msa0707880-mRNA-1:cds;Parent=Msa0707880-mRNA-1
chr4_4 CDS 81308855 81309257 81308855 ID=Msa0707880-mRNA-1:cds;Parent=Msa0707880-mRNA-1
chr4_4 three_prime_UTR 81309258 81309488 81309258 ID=Msa0707880-mRNA-1:three_prime_utr;Parent=Msa0707880-mRNA-1
Gene Sequence

>Msa0707880

ATGTCGATGATATTGAAGGCATGGAATTGGTATCAGAATAGCCTCTCAATTCATCCAGTGAAGACCCAAGTCGCCACCTCCGGCGTCCTTTGGGCTGTTGGAGATGTCACTGCTCAGTACATCACTCACTCAGCGTCAGCATCTTCTAAAAAACGTCTTCAATTATCTGCCACTGAAGAAGCAACAGATGATAAATTTGTCATCGATTGGAGACGTGTTGCTGTTACTAGTATGTTTGGAATTGGTTTTGTTGGTCCAGTTGGCCATTTCTGGTATGAAGGCTTGGAAAAATTCATAAGTCACAAGCTTCATCTAATGCCACAAACTGCACGATCCGTAGCTACAAAAGTTGCAATGGACGGCTTGATTTTCGGTCCGGTGCATTTGTTTGTTTTCTTTACTTACATGGGATTGTCTGCTGGAAAGACTATTCCTGAGGTGAAGGAAGACTTGAAGAGGAATTATTTCCCAGCCTTGGTTTTAGAAGGTGGTGTGTGGCCAATTGTGCAGGTTTTTAATTTTCGGTATGTTCCTGTCAAGTACCAGCTTCTGTATGTAAACCTGTTCTGCTTGCTGGATAGTGCTTTCTTGTCTTGGTTGGAGCAACAGAAAGATGCAGCTTGGAAACAATGGTTTCAACCATTTCATTCTTCAAATGGAAAAGGTGGTCAATGA

Protein sequence

>Msa0707880

MSMILKAWNWYQNSLSIHPVKTQVATSGVLWAVGDVTAQYITHSASASSKKRLQLSATEEATDDKFVIDWRRVAVTSMFGIGFVGPVGHFWYEGLEKFISHKLHLMPQTARSVATKVAMDGLIFGPVHLFVFFTYMGLSAGKTIPEVKEDLKRNYFPALVLEGGVWPIVQVFNFRYVPVKYQLLYVNLFCLLDSAFLSWLEQQKDAAWKQWFQPFHSSNGKGGQ*