AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400240 MtrunA17_Chr1g0194531 86.093 151 14 2 1 151 1 144 1.57e-86 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400240 AT4G01995.2 51.145 131 56 1 21 151 27 149 6.03e-34 118
Msa1400240 AT4G01995.1 51.145 131 56 1 21 151 27 149 3.43e-33 118
Msa1400240 AT4G01995.3 57.547 106 45 0 48 153 15 120 1.98e-32 115

Find 108 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTTAAATAAATGTTTA+AGG 0.091775 tig0022428:-52772 None:intergenic
GGCAGTCACACCTGTGTTTC+TGG 0.163795 tig0022428:-53624 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 tig0022428:+51221 Msa1400240:CDS
CTCACTAGCTTGTTATGTTC+AGG 0.249478 tig0022428:-52732 None:intergenic
GCAGAAGATGCAAACCGTTT+TGG 0.270080 tig0022428:-51306 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 tig0022428:+51452 Msa1400240:CDS
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 tig0022428:+52597 Msa1400240:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 tig0022428:-51686 None:intergenic
TTGCTAAGGGGAGCGCTTAC+CGG 0.307796 tig0022428:-51103 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 tig0022428:-53551 None:intergenic
GACCTTCTTCAAGGATCATA+TGG 0.328100 tig0022428:+53364 Msa1400240:intron
TTAAATTTGCAGTTCAAATT+CGG 0.342169 tig0022428:+53512 Msa1400240:intron
AACCTGTGTTGGAAACTTAC+AGG 0.345038 tig0022428:-53046 None:intergenic
GTCTACAGAATTGACTTTGC+AGG 0.348660 tig0022428:-52838 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 tig0022428:+51458 Msa1400240:CDS
TCTTCTTCTTCATCTTCATC+AGG 0.361445 tig0022428:+51281 Msa1400240:CDS
GAACTGAAGGCTTGGGTAAT+GGG 0.361682 tig0022428:+53755 Msa1400240:three_prime_UTR
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 tig0022428:-51218 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 tig0022428:+52990 Msa1400240:three_prime_UTR
TTTGGTTACCTGAACCAATT+TGG 0.369474 tig0022428:-51466 None:intergenic
AAATGCTTCCCTACGAAGAT+TGG 0.373694 tig0022428:+53598 Msa1400240:three_prime_UTR
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 tig0022428:-53568 None:intergenic
TAAATATATTGTTAATTCGT+TGG 0.393843 tig0022428:+53846 Msa1400240:three_prime_UTR
CTCCAACTTGTCTTTGAAGA+TGG 0.414710 tig0022428:+53733 Msa1400240:three_prime_UTR
TTAAATTTAGACCTTCTTCA+AGG 0.416665 tig0022428:+53355 Msa1400240:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 tig0022428:-52643 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 tig0022428:-53408 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 tig0022428:+51408 Msa1400240:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 tig0022428:+52654 Msa1400240:CDS
GGAACTGAAGGCTTGGGTAA+TGG 0.446568 tig0022428:+53754 Msa1400240:three_prime_UTR
GAAGATGGAACTGAAGGCTT+GGG 0.449488 tig0022428:+53748 Msa1400240:three_prime_UTR
TCACTAGCTTGTTATGTTCA+GGG 0.449517 tig0022428:-52731 None:intergenic
AATCTTCGTAGGGAAGCATT+TGG 0.450960 tig0022428:-53596 None:intergenic
AACAATATATTTACAGAGAT+GGG 0.452375 tig0022428:-53836 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 tig0022428:+53412 Msa1400240:three_prime_UTR
TTAACTCTCCGCGTTTGCTA+AGG 0.456999 tig0022428:-51117 None:intergenic
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 tig0022428:+53565 Msa1400240:three_prime_UTR
TAACAATATATTTACAGAGA+TGG 0.468144 tig0022428:-53837 None:intergenic
TTAGTTAAGTTGTTACAGTT+AGG 0.472150 tig0022428:+51157 Msa1400240:five_prime_UTR
TAACTCTCCGCGTTTGCTAA+GGG 0.476469 tig0022428:-51116 None:intergenic
TCAATTAGTCCGTCATATCC+AGG 0.477685 tig0022428:-51619 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 tig0022428:+52628 Msa1400240:CDS
GATGGAACCTCATGGAATAG+TGG 0.485415 tig0022428:+52867 Msa1400240:three_prime_UTR
TGGTTAGAAACCAATTAAAC+CGG 0.486125 tig0022428:+51084 None:intergenic
GTCTTTGAAGATGGAACTGA+AGG 0.487373 tig0022428:+53742 Msa1400240:three_prime_UTR
TTACTGCACTTACTTGTCAA+TGG 0.489234 tig0022428:+52805 Msa1400240:three_prime_UTR
ACCTTCTTCAAGGATCATAT+GGG 0.499420 tig0022428:+53365 Msa1400240:three_prime_UTR
TTCCATCTTCAAAGACAAGT+TGG 0.500129 tig0022428:-53735 None:intergenic
TGAAGATGGAACTGAAGGCT+TGG 0.500254 tig0022428:+53747 Msa1400240:three_prime_UTR
CAGCTATAATCAGCAAAGTT+GGG 0.500940 tig0022428:-53407 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 tig0022428:-53544 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 tig0022428:-51680 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 tig0022428:+51292 Msa1400240:CDS
ATGGAACCTCATGGAATAGT+GGG 0.508469 tig0022428:+52868 Msa1400240:three_prime_UTR
GGATGGGACTCGAAGAAACC+TGG 0.509195 tig0022428:+51601 Msa1400240:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 tig0022428:+51409 Msa1400240:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 tig0022428:-53545 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 tig0022428:-53578 None:intergenic
CACTAGCTTGTTATGTTCAG+GGG 0.517576 tig0022428:-52730 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 tig0022428:+51188 Msa1400240:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 tig0022428:-53645 None:intergenic
GAAGAATCACTAACCTGTGT+TGG 0.521242 tig0022428:-53057 None:intergenic
ACTTACTTGTCAATGGCTCA+TGG 0.525178 tig0022428:+52812 Msa1400240:three_prime_UTR
TTGGAGCTAGAATGTGCAAA+AGG 0.526094 tig0022428:-53716 None:intergenic
TCTACAGAATTGACTTTGCA+GGG 0.526670 tig0022428:-52837 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 tig0022428:+51191 Msa1400240:CDS
CTTACTTGTCAATGGCTCAT+GGG 0.539633 tig0022428:+52813 Msa1400240:three_prime_UTR
CTCCGATACCATAGAAGCTA+CGG 0.540098 tig0022428:+51678 Msa1400240:CDS
TATGGGAGTTCCATTACTCA+TGG 0.540166 tig0022428:+53382 Msa1400240:three_prime_UTR
CTAGAATGTGCAAAAGGCTG+TGG 0.546342 tig0022428:-53710 None:intergenic
TACTATAACAGGAAGTGGGA+TGG 0.548952 tig0022428:+51584 Msa1400240:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 tig0022428:-52607 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 tig0022428:-51449 None:intergenic
TTACAGTTAGGAAGAAATGA+AGG 0.558079 tig0022428:+51169 Msa1400240:exon
TCCCATATGATCCTTGAAGA+AGG 0.562632 tig0022428:-53366 None:intergenic
AACTCTCCGCGTTTGCTAAG+GGG 0.565270 tig0022428:-51115 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 tig0022428:+52634 Msa1400240:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 tig0022428:-51651 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 tig0022428:-51224 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 tig0022428:+51580 Msa1400240:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 tig0022428:-53392 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 tig0022428:+51610 Msa1400240:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 tig0022428:+51585 Msa1400240:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 tig0022428:+53553 Msa1400240:three_prime_UTR
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 tig0022428:-53606 None:intergenic
ACCTATCAGATGGAACCTCA+TGG 0.586052 tig0022428:+52859 Msa1400240:three_prime_UTR
AACAAATCATCAATAACCCC+AGG 0.586570 tig0022428:-51426 None:intergenic
TCCATGAGGTTCCATCTGAT+AGG 0.590896 tig0022428:-52860 None:intergenic
CACCTGTAAGTTTCCAACAC+AGG 0.597620 tig0022428:+53044 Msa1400240:three_prime_UTR
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 tig0022428:-53607 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 tig0022428:+52658 Msa1400240:CDS
CTGGAGGAAAGCAAGTGTGT+TGG 0.610904 tig0022428:+53009 Msa1400240:three_prime_UTR
AATTCTGTAGACCTATCAGA+TGG 0.614406 tig0022428:+52849 Msa1400240:three_prime_UTR
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 tig0022428:-52604 None:intergenic
TCAAAGATGAATTATCGTTG+TGG 0.625539 tig0022428:-53782 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 tig0022428:+51646 Msa1400240:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 tig0022428:+52631 Msa1400240:CDS
AGCGCTCCCCTTAGCAAACG+CGG 0.634335 tig0022428:+51109 Msa1400240:five_prime_UTR
CGAAAGATGCAAGTATCTGG+AGG 0.640761 tig0022428:+52993 Msa1400240:three_prime_UTR
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 tig0022428:-53543 None:intergenic
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 tig0022428:-53564 None:intergenic
CGGAGAGTTAAAGTGAAGTG+TGG 0.653739 tig0022428:+51129 Msa1400240:five_prime_UTR
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 tig0022428:-53542 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 tig0022428:+53614 Msa1400240:three_prime_UTR
AGACTCACCAACCATTATAG+CGG 0.701172 tig0022428:-52665 None:intergenic
TGGAACCTCATGGAATAGTG+GGG 0.705163 tig0022428:+52869 Msa1400240:three_prime_UTR
AAAGAGTGAATACAAGCCTG+GGG 0.716715 tig0022428:+51410 Msa1400240:CDS
GATCACCCCACTATTCCATG+AGG 0.750720 tig0022428:-52874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG - tig0022428:52775-52794 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG + tig0022428:51541-51560 Msa1400240:intron 15.0%
!! TAAATATATTGTTAATTCGT+TGG + tig0022428:53846-53865 Msa1400240:three_prime_UTR 15.0%
!!! GTTTTGATTGAATTTGAATT+AGG + tig0022428:51368-51387 Msa1400240:intron 20.0%
!! TATAAATAAGTTAACTGGAA+GGG - tig0022428:51496-51515 None:intergenic 20.0%
!! AAAGCTATAAATAAGTTAAC+TGG - tig0022428:51501-51520 None:intergenic 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG + tig0022428:51518-51537 Msa1400240:intron 20.0%
!! AGATTATCAAACTGTTTATA+AGG + tig0022428:51895-51914 Msa1400240:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG + tig0022428:52130-52149 Msa1400240:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG + tig0022428:52192-52211 Msa1400240:intron 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG + tig0022428:52193-52212 Msa1400240:intron 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG + tig0022428:52194-52213 Msa1400240:intron 20.0%
!! GAATAAGTAACATTGTATTA+CGG - tig0022428:52410-52429 None:intergenic 20.0%
!!! TAATACAATGTTACTTATTC+TGG + tig0022428:52410-52429 Msa1400240:intron 20.0%
!! AAGTTTAGAAGAATCATATA+AGG - tig0022428:52508-52527 None:intergenic 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG + tig0022428:52781-52800 Msa1400240:three_prime_UTR 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG + tig0022428:52782-52801 Msa1400240:three_prime_UTR 20.0%
!! TATGTACTATAAAATGTTGT+AGG + tig0022428:52963-52982 Msa1400240:intron 20.0%
!! AAATATTACGTATTCTCTTA+TGG + tig0022428:53439-53458 Msa1400240:intron 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG - tig0022428:53511-53530 None:intergenic 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG + tig0022428:53512-53531 Msa1400240:intron 20.0%
!! AAAAATATGTTCATGTCTTT+GGG - tig0022428:53652-53671 None:intergenic 20.0%
!! AACAATATATTTACAGAGAT+GGG - tig0022428:53839-53858 None:intergenic 20.0%
!! TAACAATATATTTACAGAGA+TGG - tig0022428:53840-53859 None:intergenic 20.0%
!!! ATGTTTTCAATGAATTCATT+CGG - tig0022428:53900-53919 None:intergenic 20.0%
!! TTAGTTAAGTTGTTACAGTT+AGG + tig0022428:51157-51176 Msa1400240:five_prime_UTR 25.0%
! TTGATTGAATTTGAATTAGG+TGG + tig0022428:51371-51390 Msa1400240:intron 25.0%
! TGATTGAATTTGAATTAGGT+GGG + tig0022428:51372-51391 Msa1400240:intron 25.0%
! ATAAATAAGTTAACTGGAAG+GGG - tig0022428:51495-51514 None:intergenic 25.0%
! CTATAAATAAGTTAACTGGA+AGG - tig0022428:51497-51516 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG + tig0022428:51517-51536 Msa1400240:intron 25.0%
! TATGAATATGATTAATGTGG+TGG + tig0022428:51544-51563 Msa1400240:intron 25.0%
! ATGAATATGATTAATGTGGT+GGG + tig0022428:51545-51564 Msa1400240:intron 25.0%
! GAGTATGAAAATACTATAAC+AGG + tig0022428:51573-51592 Msa1400240:intron 25.0%
! AAAATACTATAACAGGAAGT+GGG + tig0022428:51580-51599 Msa1400240:intron 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG - tig0022428:51779-51798 None:intergenic 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG + tig0022428:51857-51876 Msa1400240:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG - tig0022428:52137-52156 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG + tig0022428:52309-52328 Msa1400240:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG + tig0022428:52512-52531 Msa1400240:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG + tig0022428:52938-52957 Msa1400240:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG - tig0022428:53266-53285 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG - tig0022428:53267-53286 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG + tig0022428:53311-53330 Msa1400240:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG + tig0022428:53355-53374 Msa1400240:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG + tig0022428:53461-53480 Msa1400240:intron 25.0%
! GAAAAATATGTTCATGTCTT+TGG - tig0022428:53653-53672 None:intergenic 25.0%
!! AGACATGAACATATTTTTCT+TGG + tig0022428:53654-53673 Msa1400240:three_prime_UTR 25.0%
!! GACATGAACATATTTTTCTT+GGG + tig0022428:53655-53674 Msa1400240:three_prime_UTR 25.0%
!! TGTTTTCAATGAATTCATTC+GGG - tig0022428:53899-53918 None:intergenic 25.0%
!!! TTTTTGAGTTAAGATATCGA+AGG + tig0022428:53929-53948 Msa1400240:three_prime_UTR 25.0%
TTACAGTTAGGAAGAAATGA+AGG + tig0022428:51169-51188 Msa1400240:exon 30.0%
GAAAATACTATAACAGGAAG+TGG + tig0022428:51579-51598 Msa1400240:intron 30.0%
AGCTTTACTTTCTCTTTCTA+AGG - tig0022428:52086-52105 None:intergenic 30.0%
! GAAAGAGAAAGTAAAGCTTT+TGG + tig0022428:52088-52107 Msa1400240:intron 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG - tig0022428:52358-52377 None:intergenic 30.0%
TCAGTTAAAGACAAATCGTT+TGG - tig0022428:53218-53237 None:intergenic 30.0%
! AAGTTGTTGCATTTTATGGA+TGG + tig0022428:53315-53334 Msa1400240:intron 30.0%
TCAAAGATGAATTATCGTTG+TGG - tig0022428:53785-53804 None:intergenic 30.0%
! GTTTTCAATGAATTCATTCG+GGG - tig0022428:53898-53917 None:intergenic 30.0%
!! TTAGAACAAAGCGTTGGAAT+TGG - tig0022428:51221-51240 None:intergenic 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG + tig0022428:51221-51240 Msa1400240:CDS 35.0%
ATTCCATTAGAACAAAGCGT+TGG - tig0022428:51227-51246 None:intergenic 35.0%
TCTTCTTCTTCATCTTCATC+AGG + tig0022428:51281-51300 Msa1400240:CDS 35.0%
AACAAATCATCAATAACCCC+AGG - tig0022428:51429-51448 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG - tig0022428:51452-51471 None:intergenic 35.0%
! CAATTTGTTTCGCACCAAAT+TGG + tig0022428:51452-51471 Msa1400240:CDS 35.0%
TTTGGTTACCTGAACCAATT+TGG - tig0022428:51469-51488 None:intergenic 35.0%
! AATATGATTAATGTGGTGGG+TGG + tig0022428:51548-51567 Msa1400240:intron 35.0%
TAGTGCCTTTCATCATTAGA+CGG - tig0022428:51654-51673 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG - tig0022428:51689-51708 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG + tig0022428:51759-51778 Msa1400240:intron 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG - tig0022428:51764-51783 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG + tig0022428:51769-51788 Msa1400240:intron 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG - tig0022428:51773-51792 None:intergenic 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG - tig0022428:51948-51967 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG + tig0022428:52039-52058 Msa1400240:intron 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG + tig0022428:52198-52217 Msa1400240:intron 35.0%
AACTCTCAAAACCAAAATGG+TGG - tig0022428:52237-52256 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG - tig0022428:52240-52259 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG + tig0022428:52237-52256 Msa1400240:intron 35.0%
TTGAGAGTTTGGTATAGATC+AGG + tig0022428:52248-52267 Msa1400240:intron 35.0%
TGGTATAGATCAGGTATGTT+TGG + tig0022428:52257-52276 Msa1400240:intron 35.0%
GGTATAGATCAGGTATGTTT+GGG + tig0022428:52258-52277 Msa1400240:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG - tig0022428:52368-52387 None:intergenic 35.0%
TGGTATAGAGTTGAATGAAG+TGG - tig0022428:52373-52392 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG - tig0022428:52401-52420 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG + tig0022428:52558-52577 Msa1400240:intron 35.0%
! TGTTACAGGTACGAATTTTG+AGG + tig0022428:52572-52591 Msa1400240:intron 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG + tig0022428:52597-52616 Msa1400240:CDS 35.0%
TTATAGAGCTCCAAAAGGAA+TGG - tig0022428:52610-52629 None:intergenic 35.0%
! GCATTTTATAGAGCTCCAAA+AGG - tig0022428:52615-52634 None:intergenic 35.0%
AAAATGCTCATAGCTCCTAT+AGG + tig0022428:52628-52647 Msa1400240:CDS 35.0%
!! TCACTAGCTTGTTATGTTCA+GGG - tig0022428:52734-52753 None:intergenic 35.0%
TTACTGCACTTACTTGTCAA+TGG + tig0022428:52805-52824 Msa1400240:three_prime_UTR 35.0%
! TCTACAGAATTGACTTTGCA+GGG - tig0022428:52840-52859 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG + tig0022428:52849-52868 Msa1400240:three_prime_UTR 35.0%
TTTCAGTCAGGATTTGAACT+CGG + tig0022428:53186-53205 Msa1400240:intron 35.0%
ACATGAAAAAACCAAGGGAT+CGG - tig0022428:53261-53280 None:intergenic 35.0%
AAATGCAACAACTTCAAAGC+TGG - tig0022428:53309-53328 None:intergenic 35.0%
ACCTTCTTCAAGGATCATAT+GGG + tig0022428:53365-53384 Msa1400240:three_prime_UTR 35.0%
CAGCTATAATCAGCAAAGTT+GGG - tig0022428:53410-53429 None:intergenic 35.0%
ACAGCTATAATCAGCAAAGT+TGG - tig0022428:53411-53430 None:intergenic 35.0%
TTCCATCTTCAAAGACAAGT+TGG - tig0022428:53738-53757 None:intergenic 35.0%
! AAGGCGCTAAGTATTGTTGT+TGG + tig0022428:51188-51207 Msa1400240:CDS 40.0%
ATCTTCATCAGGACCCAAAA+CGG + tig0022428:51292-51311 Msa1400240:CDS 40.0%
! CAGAAGATGCAAACCGTTTT+GGG - tig0022428:51308-51327 None:intergenic 40.0%
TCAAAGAGTGAATACAAGCC+TGG + tig0022428:51408-51427 Msa1400240:CDS 40.0%
CAAAGAGTGAATACAAGCCT+GGG + tig0022428:51409-51428 Msa1400240:CDS 40.0%
AAAGAGTGAATACAAGCCTG+GGG + tig0022428:51410-51429 Msa1400240:CDS 40.0%
TACTATAACAGGAAGTGGGA+TGG + tig0022428:51584-51603 Msa1400240:intron 40.0%
ACTATAACAGGAAGTGGGAT+GGG + tig0022428:51585-51604 Msa1400240:intron 40.0%
TCGAAGAAACCTGGATATGA+CGG + tig0022428:51610-51629 Msa1400240:CDS 40.0%
TCAATTAGTCCGTCATATCC+AGG - tig0022428:51622-51641 None:intergenic 40.0%
GCTAACCGTCTAATGATGAA+AGG + tig0022428:51646-51665 Msa1400240:CDS 40.0%
TACCGTAGCTTCTATGGTAT+CGG - tig0022428:51683-51702 None:intergenic 40.0%
GGTGTATGTGTATCCAAACA+GGG + tig0022428:52060-52079 Msa1400240:intron 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG + tig0022428:52202-52221 Msa1400240:intron 40.0%
TAGATCAGGTATGTTTGGGT+TGG + tig0022428:52262-52281 Msa1400240:intron 40.0%
! TTACGGTATGTCTGGAATTG+TGG - tig0022428:52393-52412 None:intergenic 40.0%
! AAGTGCTAACAAACTTGCTC+TGG - tig0022428:52546-52565 None:intergenic 40.0%
AAAGTTGCCGCTATAATGGT+TGG + tig0022428:52658-52677 Msa1400240:CDS 40.0%
AGACTCACCAACCATTATAG+CGG - tig0022428:52668-52687 None:intergenic 40.0%
!! CACTAGCTTGTTATGTTCAG+GGG - tig0022428:52733-52752 None:intergenic 40.0%
!! CTCACTAGCTTGTTATGTTC+AGG - tig0022428:52735-52754 None:intergenic 40.0%
ACTTACTTGTCAATGGCTCA+TGG + tig0022428:52812-52831 Msa1400240:three_prime_UTR 40.0%
CTTACTTGTCAATGGCTCAT+GGG + tig0022428:52813-52832 Msa1400240:three_prime_UTR 40.0%
! GTCTACAGAATTGACTTTGC+AGG - tig0022428:52841-52860 None:intergenic 40.0%
ATGGAACCTCATGGAATAGT+GGG + tig0022428:52868-52887 Msa1400240:three_prime_UTR 40.0%
AGTCATAAACACACAGCGAA+AGG - tig0022428:52907-52926 None:intergenic 40.0%
TGTCGAAAGATGCAAGTATC+TGG + tig0022428:52990-53009 Msa1400240:three_prime_UTR 40.0%
AACCTGTGTTGGAAACTTAC+AGG - tig0022428:53049-53068 None:intergenic 40.0%
GAAGAATCACTAACCTGTGT+TGG - tig0022428:53060-53079 None:intergenic 40.0%
! GATATCTAGAGTTTGACCGA+GGG + tig0022428:53139-53158 Msa1400240:intron 40.0%
GACCGAGGGTAACAAAATTA+TGG + tig0022428:53153-53172 Msa1400240:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG - tig0022428:53158-53177 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG - tig0022428:53179-53198 None:intergenic 40.0%
GACCTTCTTCAAGGATCATA+TGG + tig0022428:53364-53383 Msa1400240:intron 40.0%
TCCCATATGATCCTTGAAGA+AGG - tig0022428:53369-53388 None:intergenic 40.0%
TATGGGAGTTCCATTACTCA+TGG + tig0022428:53382-53401 Msa1400240:three_prime_UTR 40.0%
! CTTTGCTGATTATAGCTGTC+AGG + tig0022428:53412-53431 Msa1400240:three_prime_UTR 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG - tig0022428:53599-53618 None:intergenic 40.0%
AAATGCTTCCCTACGAAGAT+TGG + tig0022428:53598-53617 Msa1400240:three_prime_UTR 40.0%
ATATGTTCATGTCTTTGGGC+AGG - tig0022428:53648-53667 None:intergenic 40.0%
TTGGAGCTAGAATGTGCAAA+AGG - tig0022428:53719-53738 None:intergenic 40.0%
! CTCCAACTTGTCTTTGAAGA+TGG + tig0022428:53733-53752 Msa1400240:three_prime_UTR 40.0%
! GTCTTTGAAGATGGAACTGA+AGG + tig0022428:53742-53761 Msa1400240:three_prime_UTR 40.0%
! TAACTCTCCGCGTTTGCTAA+GGG - tig0022428:51119-51138 None:intergenic 45.0%
! TTAACTCTCCGCGTTTGCTA+AGG - tig0022428:51120-51139 None:intergenic 45.0%
CGGAGAGTTAAAGTGAAGTG+TGG + tig0022428:51129-51148 Msa1400240:five_prime_UTR 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG + tig0022428:51191-51210 Msa1400240:CDS 45.0%
! GCAGAAGATGCAAACCGTTT+TGG - tig0022428:51309-51328 None:intergenic 45.0%
! GTTTCGCACCAAATTGGTTC+AGG + tig0022428:51458-51477 Msa1400240:CDS 45.0%
CTCCGATACCATAGAAGCTA+CGG + tig0022428:51678-51697 Msa1400240:CDS 45.0%
CGGTGTATGTGTATCCAAAC+AGG + tig0022428:52059-52078 Msa1400240:intron 45.0%
!! TCTCTTTCTAAGGCCCTGTT+TGG - tig0022428:52076-52095 None:intergenic 45.0%
! GGCAAAGATCTCCACCATTT+TGG + tig0022428:52223-52242 Msa1400240:intron 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG + tig0022428:52265-52284 Msa1400240:intron 45.0%
TAGAGCTCCAAAAGGAATGG+AGG - tig0022428:52607-52626 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG + tig0022428:52631-52650 Msa1400240:CDS 45.0%
AGGCAAAGTTGCCGCTATAA+TGG + tig0022428:52654-52673 Msa1400240:CDS 45.0%
ACCTATCAGATGGAACCTCA+TGG + tig0022428:52859-52878 Msa1400240:three_prime_UTR 45.0%
TCCATGAGGTTCCATCTGAT+AGG - tig0022428:52863-52882 None:intergenic 45.0%
GATGGAACCTCATGGAATAG+TGG + tig0022428:52867-52886 Msa1400240:three_prime_UTR 45.0%
TGGAACCTCATGGAATAGTG+GGG + tig0022428:52869-52888 Msa1400240:three_prime_UTR 45.0%
CGAAAGATGCAAGTATCTGG+AGG + tig0022428:52993-53012 Msa1400240:three_prime_UTR 45.0%
CACCTGTAAGTTTCCAACAC+AGG + tig0022428:53044-53063 Msa1400240:three_prime_UTR 45.0%
ATATCCCTTCCCATGAGAAC+TGG - tig0022428:53124-53143 None:intergenic 45.0%
! GGATATCTAGAGTTTGACCG+AGG + tig0022428:53138-53157 Msa1400240:intron 45.0%
AACATTTGAGTCCGATCCCT+TGG + tig0022428:53247-53266 Msa1400240:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG - tig0022428:53395-53414 None:intergenic 45.0%
TTTGGACATGCTTCCAAGCA+AGG - tig0022428:53581-53600 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG - tig0022428:53609-53628 None:intergenic 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG - tig0022428:53610-53629 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG + tig0022428:53614-53633 Msa1400240:three_prime_UTR 45.0%
CTAGAATGTGCAAAAGGCTG+TGG - tig0022428:53713-53732 None:intergenic 45.0%
TGAAGATGGAACTGAAGGCT+TGG + tig0022428:53747-53766 Msa1400240:three_prime_UTR 45.0%
GAAGATGGAACTGAAGGCTT+GGG + tig0022428:53748-53767 Msa1400240:three_prime_UTR 45.0%
GAACTGAAGGCTTGGGTAAT+GGG + tig0022428:53755-53774 Msa1400240:three_prime_UTR 45.0%
! AACTCTCCGCGTTTGCTAAG+GGG - tig0022428:51118-51137 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+TGG - tig0022428:51487-51506 None:intergenic 50.0%
CTCATAGCTCCTATAGGTGG+AGG + tig0022428:52634-52653 Msa1400240:CDS 50.0%
GCAACTTTGCCTCCACCTAT+AGG - tig0022428:52646-52665 None:intergenic 50.0%
GATCACCCCACTATTCCATG+AGG - tig0022428:52877-52896 None:intergenic 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG + tig0022428:53009-53028 Msa1400240:three_prime_UTR 50.0%
TCTTAAGCCGCCAGTTCTCA+TGG + tig0022428:53111-53130 Msa1400240:intron 50.0%
CTTAAGCCGCCAGTTCTCAT+GGG + tig0022428:53112-53131 Msa1400240:intron 50.0%
GGCCAGTGATTGTTTCAGTC+AGG + tig0022428:53174-53193 Msa1400240:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG - tig0022428:53545-53564 None:intergenic 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG - tig0022428:53546-53565 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG - tig0022428:53547-53566 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG - tig0022428:53548-53567 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG - tig0022428:53554-53573 None:intergenic 50.0%
TGAAGATGACACCGTCCTGA+AGG + tig0022428:53553-53572 Msa1400240:three_prime_UTR 50.0%
GGAACTGAAGGCTTGGGTAA+TGG + tig0022428:53754-53773 Msa1400240:three_prime_UTR 50.0%
!! TTGCTAAGGGGAGCGCTTAC+CGG - tig0022428:51106-51125 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG + tig0022428:51601-51620 Msa1400240:CDS 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG + tig0022428:52274-52293 Msa1400240:intron 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG + tig0022428:52279-52298 Msa1400240:intron 55.0%
TCCCTTCCCATGAGAACTGG+CGG - tig0022428:53121-53140 None:intergenic 55.0%
CAAGCAAGGCTCCTTCAGGA+CGG - tig0022428:53567-53586 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG - tig0022428:53571-53590 None:intergenic 55.0%
GGCAGTCACACCTGTGTTTC+TGG - tig0022428:53627-53646 None:intergenic 55.0%
AGCGCTCCCCTTAGCAAACG+CGG + tig0022428:51109-51128 Msa1400240:five_prime_UTR 60.0%
AGCCGCCAGTTCTCATGGGA+AGG + tig0022428:53116-53135 Msa1400240:intron 60.0%
GCCGCCAGTTCTCATGGGAA+GGG + tig0022428:53117-53136 Msa1400240:intron 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG + tig0022428:53565-53584 Msa1400240:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0022428 gene 51099 53963 51099 ID=Msa1400240;Name=Msa1400240
tig0022428 mRNA 51099 53963 51099 ID=Msa1400240-mRNA-1;Parent=Msa1400240;Name=Msa1400240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=86|1|1|1|1|0.85|7|730|164
tig0022428 exon 51099 51313 51099 ID=Msa1400240-mRNA-1:exon:17647;Parent=Msa1400240-mRNA-1
tig0022428 exon 51390 51479 51390 ID=Msa1400240-mRNA-1:exon:17648;Parent=Msa1400240-mRNA-1
tig0022428 exon 51595 51699 51595 ID=Msa1400240-mRNA-1:exon:17649;Parent=Msa1400240-mRNA-1
tig0022428 exon 52580 52890 52580 ID=Msa1400240-mRNA-1:exon:17650;Parent=Msa1400240-mRNA-1
tig0022428 exon 52985 53065 52985 ID=Msa1400240-mRNA-1:exon:17651;Parent=Msa1400240-mRNA-1
tig0022428 exon 53365 53433 53365 ID=Msa1400240-mRNA-1:exon:17652;Parent=Msa1400240-mRNA-1
tig0022428 exon 53524 53963 53524 ID=Msa1400240-mRNA-1:exon:17653;Parent=Msa1400240-mRNA-1
tig0022428 five_prime_UTR 51099 51184 51099 ID=Msa1400240-mRNA-1:five_prime_utr;Parent=Msa1400240-mRNA-1
tig0022428 CDS 51185 51313 51185 ID=Msa1400240-mRNA-1:cds;Parent=Msa1400240-mRNA-1
tig0022428 CDS 51390 51479 51390 ID=Msa1400240-mRNA-1:cds;Parent=Msa1400240-mRNA-1
tig0022428 CDS 51595 51699 51595 ID=Msa1400240-mRNA-1:cds;Parent=Msa1400240-mRNA-1
tig0022428 CDS 52580 52750 52580 ID=Msa1400240-mRNA-1:cds;Parent=Msa1400240-mRNA-1
tig0022428 three_prime_UTR 52751 52890 52751 ID=Msa1400240-mRNA-1:three_prime_utr;Parent=Msa1400240-mRNA-1
tig0022428 three_prime_UTR 52985 53065 52985 ID=Msa1400240-mRNA-1:three_prime_utr;Parent=Msa1400240-mRNA-1
tig0022428 three_prime_UTR 53365 53433 53365 ID=Msa1400240-mRNA-1:three_prime_utr;Parent=Msa1400240-mRNA-1
tig0022428 three_prime_UTR 53524 53963 53524 ID=Msa1400240-mRNA-1:three_prime_utr;Parent=Msa1400240-mRNA-1
Gene Sequence

>Msa1400240

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGGTGAGTCTGATAATATTACATCTCATTTTACAATTCTTCAAGATGATGTTCCCCTGAACATAACAAGCTAG

Protein sequence

>Msa1400240

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVGESDNITSHFTILQDDVPLNITS*