AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034050 MtrunA17_Chr1g0194531 86.093 151 14 2 1 151 1 144 1.57e-86 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034050 AT4G01995.2 51.145 131 56 1 21 151 27 149 6.03e-34 118
Msa0034050 AT4G01995.1 51.145 131 56 1 21 151 27 149 3.43e-33 118
Msa0034050 AT4G01995.3 57.547 106 45 0 48 153 15 120 1.98e-32 115

Find 108 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTTAAATAAATGTTTA+AGG 0.091775 1_1:-61941230 None:intergenic
GGCAGTCACACCTGTGTTTC+TGG 0.163795 1_1:-61942082 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 1_1:+61939682 Msa0034050:CDS
CTCACTAGCTTGTTATGTTC+AGG 0.249478 1_1:-61941190 None:intergenic
GCAGAAGATGCAAACCGTTT+TGG 0.270080 1_1:-61939767 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 1_1:+61939910 Msa0034050:CDS
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 1_1:+61941055 Msa0034050:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 1_1:-61940144 None:intergenic
TTAGGTTACCTGAACCAATT+TGG 0.303056 1_1:-61939924 None:intergenic
TTGCTAAGGGGAGCGCTTAC+CGG 0.307796 1_1:-61939556 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 1_1:-61942009 None:intergenic
GACCTTCTTCAAGGATCATA+TGG 0.328100 1_1:+61941822 Msa0034050:intron
TTAAATTTGCAGTTCAAATT+CGG 0.342169 1_1:+61941970 Msa0034050:intron
AACCTGTGTTGGAAACTTAC+AGG 0.345038 1_1:-61941504 None:intergenic
GTCTACAGAATTGACTTTGC+AGG 0.348660 1_1:-61941296 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 1_1:+61939916 Msa0034050:CDS
TCTTCTTCTTCATCTTCATC+AGG 0.361445 1_1:+61939742 Msa0034050:CDS
GAACTGAAGGCTTGGGTAAT+GGG 0.361682 1_1:+61942213 Msa0034050:three_prime_UTR
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 1_1:-61939679 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 1_1:+61941448 Msa0034050:three_prime_UTR
AAATGCTTCCCTACGAAGAT+TGG 0.373694 1_1:+61942056 Msa0034050:three_prime_UTR
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 1_1:-61942026 None:intergenic
TAAATATATTGTTAATTCGT+TGG 0.393843 1_1:+61942304 Msa0034050:three_prime_UTR
CTCCAACTTGTCTTTGAAGA+TGG 0.414710 1_1:+61942191 Msa0034050:three_prime_UTR
TTAAATTTAGACCTTCTTCA+AGG 0.416665 1_1:+61941813 Msa0034050:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 1_1:-61941101 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 1_1:-61941866 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 1_1:+61939866 Msa0034050:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 1_1:+61941112 Msa0034050:CDS
GGAACTGAAGGCTTGGGTAA+TGG 0.446568 1_1:+61942212 Msa0034050:three_prime_UTR
GAAGATGGAACTGAAGGCTT+GGG 0.449488 1_1:+61942206 Msa0034050:three_prime_UTR
TCACTAGCTTGTTATGTTCA+GGG 0.449517 1_1:-61941189 None:intergenic
AATCTTCGTAGGGAAGCATT+TGG 0.450960 1_1:-61942054 None:intergenic
AACAATATATTTACAGAGAT+GGG 0.452375 1_1:-61942294 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 1_1:+61941870 Msa0034050:three_prime_UTR
TTAACTCTCCGCGTTTGCTA+AGG 0.456999 1_1:-61939570 None:intergenic
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 1_1:+61942023 Msa0034050:three_prime_UTR
TAACAATATATTTACAGAGA+TGG 0.468144 1_1:-61942295 None:intergenic
TTAGTTAAGTTGTTACAGTT+AGG 0.472150 1_1:+61939618 Msa0034050:five_prime_UTR
TAACTCTCCGCGTTTGCTAA+GGG 0.476469 1_1:-61939569 None:intergenic
TCAATTAGTCCGTCATATCC+AGG 0.477685 1_1:-61940077 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 1_1:+61941086 Msa0034050:CDS
GATGGAACCTCATGGAATAG+TGG 0.485415 1_1:+61941325 Msa0034050:three_prime_UTR
TGGTTAGAAACCAATTAAAC+CGG 0.486125 1_1:+61939537 None:intergenic
GTCTTTGAAGATGGAACTGA+AGG 0.487373 1_1:+61942200 Msa0034050:three_prime_UTR
TTACTGCACTTACTTGTCAA+TGG 0.489234 1_1:+61941263 Msa0034050:three_prime_UTR
ACCTTCTTCAAGGATCATAT+GGG 0.499420 1_1:+61941823 Msa0034050:three_prime_UTR
TTCCATCTTCAAAGACAAGT+TGG 0.500129 1_1:-61942193 None:intergenic
TGAAGATGGAACTGAAGGCT+TGG 0.500254 1_1:+61942205 Msa0034050:three_prime_UTR
CAGCTATAATCAGCAAAGTT+GGG 0.500940 1_1:-61941865 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 1_1:-61942002 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 1_1:-61940138 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 1_1:+61939753 Msa0034050:CDS
ATGGAACCTCATGGAATAGT+GGG 0.508469 1_1:+61941326 Msa0034050:three_prime_UTR
GGATGGGACTCGAAGAAACC+TGG 0.509195 1_1:+61940059 Msa0034050:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 1_1:+61939867 Msa0034050:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 1_1:-61942003 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 1_1:-61942036 None:intergenic
CACTAGCTTGTTATGTTCAG+GGG 0.517576 1_1:-61941188 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 1_1:+61939649 Msa0034050:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 1_1:-61942103 None:intergenic
GAAGAATCACTAACCTGTGT+TGG 0.521242 1_1:-61941515 None:intergenic
ACTTACTTGTCAATGGCTCA+TGG 0.525178 1_1:+61941270 Msa0034050:three_prime_UTR
TTGGAGCTAGAATGTGCAAA+AGG 0.526094 1_1:-61942174 None:intergenic
TCTACAGAATTGACTTTGCA+GGG 0.526670 1_1:-61941295 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 1_1:+61939652 Msa0034050:CDS
CTTACTTGTCAATGGCTCAT+GGG 0.539633 1_1:+61941271 Msa0034050:three_prime_UTR
CTCCGATACCATAGAAGCTA+CGG 0.540098 1_1:+61940136 Msa0034050:CDS
TATGGGAGTTCCATTACTCA+TGG 0.540166 1_1:+61941840 Msa0034050:three_prime_UTR
CTAGAATGTGCAAAAGGCTG+TGG 0.546342 1_1:-61942168 None:intergenic
TACTATAACAGGAAGTGGGA+TGG 0.548952 1_1:+61940042 Msa0034050:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 1_1:-61941065 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 1_1:-61939907 None:intergenic
TTACAGTTAGGAAGAAATGA+AGG 0.558079 1_1:+61939630 Msa0034050:exon
TCCCATATGATCCTTGAAGA+AGG 0.562632 1_1:-61941824 None:intergenic
AACTCTCCGCGTTTGCTAAG+GGG 0.565270 1_1:-61939568 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 1_1:+61941092 Msa0034050:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 1_1:-61940109 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 1_1:-61939685 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 1_1:+61940038 Msa0034050:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 1_1:-61941850 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 1_1:+61940068 Msa0034050:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 1_1:+61940043 Msa0034050:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 1_1:+61942011 Msa0034050:three_prime_UTR
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 1_1:-61942064 None:intergenic
ACCTATCAGATGGAACCTCA+TGG 0.586052 1_1:+61941317 Msa0034050:three_prime_UTR
AACAAATCATCAATAACCCC+AGG 0.586570 1_1:-61939884 None:intergenic
TCCATGAGGTTCCATCTGAT+AGG 0.590896 1_1:-61941318 None:intergenic
CACCTGTAAGTTTCCAACAC+AGG 0.597620 1_1:+61941502 Msa0034050:three_prime_UTR
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 1_1:-61942065 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 1_1:+61941116 Msa0034050:CDS
CTGGAGGAAAGCAAGTGTGT+TGG 0.610904 1_1:+61941467 Msa0034050:three_prime_UTR
AATTCTGTAGACCTATCAGA+TGG 0.614406 1_1:+61941307 Msa0034050:three_prime_UTR
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 1_1:-61941062 None:intergenic
TCAAAGATGAATTATCGTTG+TGG 0.625539 1_1:-61942240 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 1_1:+61940104 Msa0034050:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 1_1:+61941089 Msa0034050:CDS
AGCGCTCCCCTTAGCAAACG+CGG 0.634335 1_1:+61939562 Msa0034050:five_prime_UTR
CGAAAGATGCAAGTATCTGG+AGG 0.640761 1_1:+61941451 Msa0034050:three_prime_UTR
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 1_1:-61942001 None:intergenic
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 1_1:-61942022 None:intergenic
CGGAGAGTTAAAGTGAAGTG+TGG 0.653739 1_1:+61939582 Msa0034050:five_prime_UTR
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 1_1:-61942000 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 1_1:+61942072 Msa0034050:three_prime_UTR
AGACTCACCAACCATTATAG+CGG 0.701172 1_1:-61941123 None:intergenic
TGGAACCTCATGGAATAGTG+GGG 0.705163 1_1:+61941327 Msa0034050:three_prime_UTR
AAAGAGTGAATACAAGCCTG+GGG 0.716715 1_1:+61939868 Msa0034050:CDS
GATCACCCCACTATTCCATG+AGG 0.750720 1_1:-61941332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG - chr1_1:61941233-61941252 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG + chr1_1:61939999-61940018 Msa0034050:intron 15.0%
!! TAAATATATTGTTAATTCGT+TGG + chr1_1:61942304-61942323 Msa0034050:three_prime_UTR 15.0%
!!! GTTTTGATTGAATTTGAATT+AGG + chr1_1:61939826-61939845 Msa0034050:intron 20.0%
!! TATAAATAAGTTAACTGGAA+GGG - chr1_1:61939954-61939973 None:intergenic 20.0%
!! AAAGCTATAAATAAGTTAAC+TGG - chr1_1:61939959-61939978 None:intergenic 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG + chr1_1:61939976-61939995 Msa0034050:intron 20.0%
!! AGATTATCAAACTGTTTATA+AGG + chr1_1:61940353-61940372 Msa0034050:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG + chr1_1:61940588-61940607 Msa0034050:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG + chr1_1:61940650-61940669 Msa0034050:intron 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG + chr1_1:61940651-61940670 Msa0034050:intron 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG + chr1_1:61940652-61940671 Msa0034050:intron 20.0%
!! GAATAAGTAACATTGTATTA+CGG - chr1_1:61940868-61940887 None:intergenic 20.0%
!!! TAATACAATGTTACTTATTC+TGG + chr1_1:61940868-61940887 Msa0034050:intron 20.0%
!! AAGTTTAGAAGAATCATATA+AGG - chr1_1:61940966-61940985 None:intergenic 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG + chr1_1:61941239-61941258 Msa0034050:three_prime_UTR 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG + chr1_1:61941240-61941259 Msa0034050:three_prime_UTR 20.0%
!! TATGTACTATAAAATGTTGT+AGG + chr1_1:61941421-61941440 Msa0034050:intron 20.0%
!! AAATATTACGTATTCTCTTA+TGG + chr1_1:61941897-61941916 Msa0034050:intron 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG - chr1_1:61941969-61941988 None:intergenic 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG + chr1_1:61941970-61941989 Msa0034050:intron 20.0%
!! AAAAATATGTTCATGTCTTT+GGG - chr1_1:61942110-61942129 None:intergenic 20.0%
!! AACAATATATTTACAGAGAT+GGG - chr1_1:61942297-61942316 None:intergenic 20.0%
!! TAACAATATATTTACAGAGA+TGG - chr1_1:61942298-61942317 None:intergenic 20.0%
!!! ATGTTTTCAATGAATTCATT+CGG - chr1_1:61942358-61942377 None:intergenic 20.0%
!! TTAGTTAAGTTGTTACAGTT+AGG + chr1_1:61939618-61939637 Msa0034050:five_prime_UTR 25.0%
! TTGATTGAATTTGAATTAGG+TGG + chr1_1:61939829-61939848 Msa0034050:intron 25.0%
! TGATTGAATTTGAATTAGGT+GGG + chr1_1:61939830-61939849 Msa0034050:intron 25.0%
! ATAAATAAGTTAACTGGAAG+GGG - chr1_1:61939953-61939972 None:intergenic 25.0%
! CTATAAATAAGTTAACTGGA+AGG - chr1_1:61939955-61939974 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG + chr1_1:61939975-61939994 Msa0034050:intron 25.0%
! TATGAATATGATTAATGTGG+TGG + chr1_1:61940002-61940021 Msa0034050:intron 25.0%
! ATGAATATGATTAATGTGGT+GGG + chr1_1:61940003-61940022 Msa0034050:intron 25.0%
! GAGTATGAAAATACTATAAC+AGG + chr1_1:61940031-61940050 Msa0034050:intron 25.0%
! AAAATACTATAACAGGAAGT+GGG + chr1_1:61940038-61940057 Msa0034050:intron 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG - chr1_1:61940237-61940256 None:intergenic 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG + chr1_1:61940315-61940334 Msa0034050:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG - chr1_1:61940595-61940614 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG + chr1_1:61940767-61940786 Msa0034050:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG + chr1_1:61940970-61940989 Msa0034050:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG + chr1_1:61941396-61941415 Msa0034050:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG - chr1_1:61941724-61941743 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG - chr1_1:61941725-61941744 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG + chr1_1:61941769-61941788 Msa0034050:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG + chr1_1:61941813-61941832 Msa0034050:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG + chr1_1:61941919-61941938 Msa0034050:intron 25.0%
! GAAAAATATGTTCATGTCTT+TGG - chr1_1:61942111-61942130 None:intergenic 25.0%
!! AGACATGAACATATTTTTCT+TGG + chr1_1:61942112-61942131 Msa0034050:three_prime_UTR 25.0%
!! GACATGAACATATTTTTCTT+GGG + chr1_1:61942113-61942132 Msa0034050:three_prime_UTR 25.0%
!! TGTTTTCAATGAATTCATTC+GGG - chr1_1:61942357-61942376 None:intergenic 25.0%
!!! TTTTTGAGTTAAGATATCGA+AGG + chr1_1:61942387-61942406 Msa0034050:three_prime_UTR 25.0%
TTACAGTTAGGAAGAAATGA+AGG + chr1_1:61939630-61939649 Msa0034050:exon 30.0%
GAAAATACTATAACAGGAAG+TGG + chr1_1:61940037-61940056 Msa0034050:intron 30.0%
AGCTTTACTTTCTCTTTCTA+AGG - chr1_1:61940544-61940563 None:intergenic 30.0%
! GAAAGAGAAAGTAAAGCTTT+TGG + chr1_1:61940546-61940565 Msa0034050:intron 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG - chr1_1:61940816-61940835 None:intergenic 30.0%
TCAGTTAAAGACAAATCGTT+TGG - chr1_1:61941676-61941695 None:intergenic 30.0%
! AAGTTGTTGCATTTTATGGA+TGG + chr1_1:61941773-61941792 Msa0034050:intron 30.0%
TCAAAGATGAATTATCGTTG+TGG - chr1_1:61942243-61942262 None:intergenic 30.0%
! GTTTTCAATGAATTCATTCG+GGG - chr1_1:61942356-61942375 None:intergenic 30.0%
!! TTAGAACAAAGCGTTGGAAT+TGG - chr1_1:61939682-61939701 None:intergenic 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG + chr1_1:61939682-61939701 Msa0034050:CDS 35.0%
ATTCCATTAGAACAAAGCGT+TGG - chr1_1:61939688-61939707 None:intergenic 35.0%
TCTTCTTCTTCATCTTCATC+AGG + chr1_1:61939742-61939761 Msa0034050:CDS 35.0%
AACAAATCATCAATAACCCC+AGG - chr1_1:61939887-61939906 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG - chr1_1:61939910-61939929 None:intergenic 35.0%
! CAATTTGTTTCGCACCAAAT+TGG + chr1_1:61939910-61939929 Msa0034050:CDS 35.0%
TTAGGTTACCTGAACCAATT+TGG - chr1_1:61939927-61939946 None:intergenic 35.0%
! AATATGATTAATGTGGTGGG+TGG + chr1_1:61940006-61940025 Msa0034050:intron 35.0%
TAGTGCCTTTCATCATTAGA+CGG - chr1_1:61940112-61940131 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG - chr1_1:61940147-61940166 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG + chr1_1:61940217-61940236 Msa0034050:intron 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG - chr1_1:61940222-61940241 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG + chr1_1:61940227-61940246 Msa0034050:intron 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG - chr1_1:61940231-61940250 None:intergenic 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG - chr1_1:61940406-61940425 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG + chr1_1:61940497-61940516 Msa0034050:intron 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG + chr1_1:61940656-61940675 Msa0034050:intron 35.0%
AACTCTCAAAACCAAAATGG+TGG - chr1_1:61940695-61940714 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG - chr1_1:61940698-61940717 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG + chr1_1:61940695-61940714 Msa0034050:intron 35.0%
TTGAGAGTTTGGTATAGATC+AGG + chr1_1:61940706-61940725 Msa0034050:intron 35.0%
TGGTATAGATCAGGTATGTT+TGG + chr1_1:61940715-61940734 Msa0034050:intron 35.0%
GGTATAGATCAGGTATGTTT+GGG + chr1_1:61940716-61940735 Msa0034050:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG - chr1_1:61940826-61940845 None:intergenic 35.0%
TGGTATAGAGTTGAATGAAG+TGG - chr1_1:61940831-61940850 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG - chr1_1:61940859-61940878 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG + chr1_1:61941016-61941035 Msa0034050:intron 35.0%
! TGTTACAGGTACGAATTTTG+AGG + chr1_1:61941030-61941049 Msa0034050:intron 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG + chr1_1:61941055-61941074 Msa0034050:CDS 35.0%
TTATAGAGCTCCAAAAGGAA+TGG - chr1_1:61941068-61941087 None:intergenic 35.0%
! GCATTTTATAGAGCTCCAAA+AGG - chr1_1:61941073-61941092 None:intergenic 35.0%
AAAATGCTCATAGCTCCTAT+AGG + chr1_1:61941086-61941105 Msa0034050:CDS 35.0%
!! TCACTAGCTTGTTATGTTCA+GGG - chr1_1:61941192-61941211 None:intergenic 35.0%
TTACTGCACTTACTTGTCAA+TGG + chr1_1:61941263-61941282 Msa0034050:three_prime_UTR 35.0%
! TCTACAGAATTGACTTTGCA+GGG - chr1_1:61941298-61941317 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG + chr1_1:61941307-61941326 Msa0034050:three_prime_UTR 35.0%
TTTCAGTCAGGATTTGAACT+CGG + chr1_1:61941644-61941663 Msa0034050:intron 35.0%
ACATGAAAAAACCAAGGGAT+CGG - chr1_1:61941719-61941738 None:intergenic 35.0%
AAATGCAACAACTTCAAAGC+TGG - chr1_1:61941767-61941786 None:intergenic 35.0%
ACCTTCTTCAAGGATCATAT+GGG + chr1_1:61941823-61941842 Msa0034050:three_prime_UTR 35.0%
CAGCTATAATCAGCAAAGTT+GGG - chr1_1:61941868-61941887 None:intergenic 35.0%
ACAGCTATAATCAGCAAAGT+TGG - chr1_1:61941869-61941888 None:intergenic 35.0%
TTCCATCTTCAAAGACAAGT+TGG - chr1_1:61942196-61942215 None:intergenic 35.0%
! AAGGCGCTAAGTATTGTTGT+TGG + chr1_1:61939649-61939668 Msa0034050:CDS 40.0%
ATCTTCATCAGGACCCAAAA+CGG + chr1_1:61939753-61939772 Msa0034050:CDS 40.0%
! CAGAAGATGCAAACCGTTTT+GGG - chr1_1:61939769-61939788 None:intergenic 40.0%
TCAAAGAGTGAATACAAGCC+TGG + chr1_1:61939866-61939885 Msa0034050:CDS 40.0%
CAAAGAGTGAATACAAGCCT+GGG + chr1_1:61939867-61939886 Msa0034050:CDS 40.0%
AAAGAGTGAATACAAGCCTG+GGG + chr1_1:61939868-61939887 Msa0034050:CDS 40.0%
TACTATAACAGGAAGTGGGA+TGG + chr1_1:61940042-61940061 Msa0034050:intron 40.0%
ACTATAACAGGAAGTGGGAT+GGG + chr1_1:61940043-61940062 Msa0034050:intron 40.0%
TCGAAGAAACCTGGATATGA+CGG + chr1_1:61940068-61940087 Msa0034050:CDS 40.0%
TCAATTAGTCCGTCATATCC+AGG - chr1_1:61940080-61940099 None:intergenic 40.0%
GCTAACCGTCTAATGATGAA+AGG + chr1_1:61940104-61940123 Msa0034050:CDS 40.0%
TACCGTAGCTTCTATGGTAT+CGG - chr1_1:61940141-61940160 None:intergenic 40.0%
GGTGTATGTGTATCCAAACA+GGG + chr1_1:61940518-61940537 Msa0034050:intron 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG + chr1_1:61940660-61940679 Msa0034050:intron 40.0%
TAGATCAGGTATGTTTGGGT+TGG + chr1_1:61940720-61940739 Msa0034050:intron 40.0%
! TTACGGTATGTCTGGAATTG+TGG - chr1_1:61940851-61940870 None:intergenic 40.0%
! AAGTGCTAACAAACTTGCTC+TGG - chr1_1:61941004-61941023 None:intergenic 40.0%
AAAGTTGCCGCTATAATGGT+TGG + chr1_1:61941116-61941135 Msa0034050:CDS 40.0%
AGACTCACCAACCATTATAG+CGG - chr1_1:61941126-61941145 None:intergenic 40.0%
!! CACTAGCTTGTTATGTTCAG+GGG - chr1_1:61941191-61941210 None:intergenic 40.0%
!! CTCACTAGCTTGTTATGTTC+AGG - chr1_1:61941193-61941212 None:intergenic 40.0%
ACTTACTTGTCAATGGCTCA+TGG + chr1_1:61941270-61941289 Msa0034050:three_prime_UTR 40.0%
CTTACTTGTCAATGGCTCAT+GGG + chr1_1:61941271-61941290 Msa0034050:three_prime_UTR 40.0%
! GTCTACAGAATTGACTTTGC+AGG - chr1_1:61941299-61941318 None:intergenic 40.0%
ATGGAACCTCATGGAATAGT+GGG + chr1_1:61941326-61941345 Msa0034050:three_prime_UTR 40.0%
AGTCATAAACACACAGCGAA+AGG - chr1_1:61941365-61941384 None:intergenic 40.0%
TGTCGAAAGATGCAAGTATC+TGG + chr1_1:61941448-61941467 Msa0034050:three_prime_UTR 40.0%
AACCTGTGTTGGAAACTTAC+AGG - chr1_1:61941507-61941526 None:intergenic 40.0%
GAAGAATCACTAACCTGTGT+TGG - chr1_1:61941518-61941537 None:intergenic 40.0%
! GATATCTAGAGTTTGACCGA+GGG + chr1_1:61941597-61941616 Msa0034050:intron 40.0%
GACCGAGGGTAACAAAATTA+TGG + chr1_1:61941611-61941630 Msa0034050:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG - chr1_1:61941616-61941635 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG - chr1_1:61941637-61941656 None:intergenic 40.0%
GACCTTCTTCAAGGATCATA+TGG + chr1_1:61941822-61941841 Msa0034050:intron 40.0%
TCCCATATGATCCTTGAAGA+AGG - chr1_1:61941827-61941846 None:intergenic 40.0%
TATGGGAGTTCCATTACTCA+TGG + chr1_1:61941840-61941859 Msa0034050:three_prime_UTR 40.0%
! CTTTGCTGATTATAGCTGTC+AGG + chr1_1:61941870-61941889 Msa0034050:three_prime_UTR 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG - chr1_1:61942057-61942076 None:intergenic 40.0%
AAATGCTTCCCTACGAAGAT+TGG + chr1_1:61942056-61942075 Msa0034050:three_prime_UTR 40.0%
ATATGTTCATGTCTTTGGGC+AGG - chr1_1:61942106-61942125 None:intergenic 40.0%
TTGGAGCTAGAATGTGCAAA+AGG - chr1_1:61942177-61942196 None:intergenic 40.0%
! CTCCAACTTGTCTTTGAAGA+TGG + chr1_1:61942191-61942210 Msa0034050:three_prime_UTR 40.0%
! GTCTTTGAAGATGGAACTGA+AGG + chr1_1:61942200-61942219 Msa0034050:three_prime_UTR 40.0%
! TAACTCTCCGCGTTTGCTAA+GGG - chr1_1:61939572-61939591 None:intergenic 45.0%
! TTAACTCTCCGCGTTTGCTA+AGG - chr1_1:61939573-61939592 None:intergenic 45.0%
CGGAGAGTTAAAGTGAAGTG+TGG + chr1_1:61939582-61939601 Msa0034050:five_prime_UTR 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG + chr1_1:61939652-61939671 Msa0034050:CDS 45.0%
! GCAGAAGATGCAAACCGTTT+TGG - chr1_1:61939770-61939789 None:intergenic 45.0%
! GTTTCGCACCAAATTGGTTC+AGG + chr1_1:61939916-61939935 Msa0034050:CDS 45.0%
CTCCGATACCATAGAAGCTA+CGG + chr1_1:61940136-61940155 Msa0034050:CDS 45.0%
CGGTGTATGTGTATCCAAAC+AGG + chr1_1:61940517-61940536 Msa0034050:intron 45.0%
!! TCTCTTTCTAAGGCCCTGTT+TGG - chr1_1:61940534-61940553 None:intergenic 45.0%
! GGCAAAGATCTCCACCATTT+TGG + chr1_1:61940681-61940700 Msa0034050:intron 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG + chr1_1:61940723-61940742 Msa0034050:intron 45.0%
TAGAGCTCCAAAAGGAATGG+AGG - chr1_1:61941065-61941084 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG + chr1_1:61941089-61941108 Msa0034050:CDS 45.0%
AGGCAAAGTTGCCGCTATAA+TGG + chr1_1:61941112-61941131 Msa0034050:CDS 45.0%
ACCTATCAGATGGAACCTCA+TGG + chr1_1:61941317-61941336 Msa0034050:three_prime_UTR 45.0%
TCCATGAGGTTCCATCTGAT+AGG - chr1_1:61941321-61941340 None:intergenic 45.0%
GATGGAACCTCATGGAATAG+TGG + chr1_1:61941325-61941344 Msa0034050:three_prime_UTR 45.0%
TGGAACCTCATGGAATAGTG+GGG + chr1_1:61941327-61941346 Msa0034050:three_prime_UTR 45.0%
CGAAAGATGCAAGTATCTGG+AGG + chr1_1:61941451-61941470 Msa0034050:three_prime_UTR 45.0%
CACCTGTAAGTTTCCAACAC+AGG + chr1_1:61941502-61941521 Msa0034050:three_prime_UTR 45.0%
ATATCCCTTCCCATGAGAAC+TGG - chr1_1:61941582-61941601 None:intergenic 45.0%
! GGATATCTAGAGTTTGACCG+AGG + chr1_1:61941596-61941615 Msa0034050:intron 45.0%
AACATTTGAGTCCGATCCCT+TGG + chr1_1:61941705-61941724 Msa0034050:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG - chr1_1:61941853-61941872 None:intergenic 45.0%
TTTGGACATGCTTCCAAGCA+AGG - chr1_1:61942039-61942058 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG - chr1_1:61942067-61942086 None:intergenic 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG - chr1_1:61942068-61942087 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG + chr1_1:61942072-61942091 Msa0034050:three_prime_UTR 45.0%
CTAGAATGTGCAAAAGGCTG+TGG - chr1_1:61942171-61942190 None:intergenic 45.0%
TGAAGATGGAACTGAAGGCT+TGG + chr1_1:61942205-61942224 Msa0034050:three_prime_UTR 45.0%
GAAGATGGAACTGAAGGCTT+GGG + chr1_1:61942206-61942225 Msa0034050:three_prime_UTR 45.0%
GAACTGAAGGCTTGGGTAAT+GGG + chr1_1:61942213-61942232 Msa0034050:three_prime_UTR 45.0%
! AACTCTCCGCGTTTGCTAAG+GGG - chr1_1:61939571-61939590 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+AGG - chr1_1:61939945-61939964 None:intergenic 50.0%
CTCATAGCTCCTATAGGTGG+AGG + chr1_1:61941092-61941111 Msa0034050:CDS 50.0%
GCAACTTTGCCTCCACCTAT+AGG - chr1_1:61941104-61941123 None:intergenic 50.0%
GATCACCCCACTATTCCATG+AGG - chr1_1:61941335-61941354 None:intergenic 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG + chr1_1:61941467-61941486 Msa0034050:three_prime_UTR 50.0%
TCTTAAGCCGCCAGTTCTCA+TGG + chr1_1:61941569-61941588 Msa0034050:intron 50.0%
CTTAAGCCGCCAGTTCTCAT+GGG + chr1_1:61941570-61941589 Msa0034050:intron 50.0%
GGCCAGTGATTGTTTCAGTC+AGG + chr1_1:61941632-61941651 Msa0034050:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG - chr1_1:61942003-61942022 None:intergenic 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG - chr1_1:61942004-61942023 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG - chr1_1:61942005-61942024 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG - chr1_1:61942006-61942025 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG - chr1_1:61942012-61942031 None:intergenic 50.0%
TGAAGATGACACCGTCCTGA+AGG + chr1_1:61942011-61942030 Msa0034050:three_prime_UTR 50.0%
GGAACTGAAGGCTTGGGTAA+TGG + chr1_1:61942212-61942231 Msa0034050:three_prime_UTR 50.0%
!! TTGCTAAGGGGAGCGCTTAC+CGG - chr1_1:61939559-61939578 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG + chr1_1:61940059-61940078 Msa0034050:CDS 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG + chr1_1:61940732-61940751 Msa0034050:intron 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG + chr1_1:61940737-61940756 Msa0034050:intron 55.0%
TCCCTTCCCATGAGAACTGG+CGG - chr1_1:61941579-61941598 None:intergenic 55.0%
CAAGCAAGGCTCCTTCAGGA+CGG - chr1_1:61942025-61942044 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG - chr1_1:61942029-61942048 None:intergenic 55.0%
GGCAGTCACACCTGTGTTTC+TGG - chr1_1:61942085-61942104 None:intergenic 55.0%
AGCGCTCCCCTTAGCAAACG+CGG + chr1_1:61939562-61939581 Msa0034050:five_prime_UTR 60.0%
AGCCGCCAGTTCTCATGGGA+AGG + chr1_1:61941574-61941593 Msa0034050:intron 60.0%
GCCGCCAGTTCTCATGGGAA+GGG + chr1_1:61941575-61941594 Msa0034050:intron 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG + chr1_1:61942023-61942042 Msa0034050:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61939552 61942421 61939552 ID=Msa0034050;Name=Msa0034050
chr1_1 mRNA 61939552 61942421 61939552 ID=Msa0034050-mRNA-1;Parent=Msa0034050;Name=Msa0034050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=94|1|1|1|1|0.85|7|730|164
chr1_1 exon 61939552 61939774 61939552 ID=Msa0034050-mRNA-1:exon:19409;Parent=Msa0034050-mRNA-1
chr1_1 exon 61939848 61939937 61939848 ID=Msa0034050-mRNA-1:exon:19410;Parent=Msa0034050-mRNA-1
chr1_1 exon 61940053 61940157 61940053 ID=Msa0034050-mRNA-1:exon:19411;Parent=Msa0034050-mRNA-1
chr1_1 exon 61941038 61941348 61941038 ID=Msa0034050-mRNA-1:exon:19412;Parent=Msa0034050-mRNA-1
chr1_1 exon 61941443 61941523 61941443 ID=Msa0034050-mRNA-1:exon:19413;Parent=Msa0034050-mRNA-1
chr1_1 exon 61941823 61941891 61941823 ID=Msa0034050-mRNA-1:exon:19414;Parent=Msa0034050-mRNA-1
chr1_1 exon 61941982 61942421 61941982 ID=Msa0034050-mRNA-1:exon:19415;Parent=Msa0034050-mRNA-1
chr1_1 five_prime_UTR 61939552 61939645 61939552 ID=Msa0034050-mRNA-1:five_prime_utr;Parent=Msa0034050-mRNA-1
chr1_1 CDS 61939646 61939774 61939646 ID=Msa0034050-mRNA-1:cds;Parent=Msa0034050-mRNA-1
chr1_1 CDS 61939848 61939937 61939848 ID=Msa0034050-mRNA-1:cds;Parent=Msa0034050-mRNA-1
chr1_1 CDS 61940053 61940157 61940053 ID=Msa0034050-mRNA-1:cds;Parent=Msa0034050-mRNA-1
chr1_1 CDS 61941038 61941208 61941038 ID=Msa0034050-mRNA-1:cds;Parent=Msa0034050-mRNA-1
chr1_1 three_prime_UTR 61941209 61941348 61941209 ID=Msa0034050-mRNA-1:three_prime_utr;Parent=Msa0034050-mRNA-1
chr1_1 three_prime_UTR 61941443 61941523 61941443 ID=Msa0034050-mRNA-1:three_prime_utr;Parent=Msa0034050-mRNA-1
chr1_1 three_prime_UTR 61941823 61941891 61941823 ID=Msa0034050-mRNA-1:three_prime_utr;Parent=Msa0034050-mRNA-1
chr1_1 three_prime_UTR 61941982 61942421 61941982 ID=Msa0034050-mRNA-1:three_prime_utr;Parent=Msa0034050-mRNA-1
Gene Sequence

>Msa0034050

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGGTGAGTCTGATAATATTACATCTCATTTTACAATTCTTCAAGATGATGTTCCCCTGAACATAACAAGCTAG

Protein sequence

>Msa0034050

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVGESDNITSHFTILQDDVPLNITS*