AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0314690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314690 MtrunA17_Chr2g0285121 94.904 157 8 0 1 157 1 157 2.35e-96 295
Msa0314690 MtrunA17_Chr2g0285111 82.609 161 24 3 1 157 1 161 4.06e-80 252
Msa0314690 MtrunA17_Chr8g0377961 32.432 148 80 4 13 157 29 159 1.31e-18 82.0
Msa0314690 MtrunA17_Chr5g0447151 35.766 137 73 4 26 157 29 155 3.15e-18 76.6
Msa0314690 MtrunA17_Chr8g0354731 36.154 130 69 4 28 156 54 170 6.12e-18 76.3
Msa0314690 MtrunA17_Chr4g0057521 42.857 98 46 2 61 158 13 100 2.83e-17 74.3
Msa0314690 MtrunA17_Chr4g0057501 34.559 136 75 4 28 159 7 132 4.96e-17 72.8
Msa0314690 MtrunA17_Chr8g0354771 35.385 130 73 3 28 157 26 144 8.67e-17 76.6
Msa0314690 MtrunA17_Chr5g0439281 35.766 137 73 4 26 157 28 154 1.24e-16 73.6
Msa0314690 MtrunA17_Chr8g0369891 38.462 143 68 6 19 157 26 152 3.50e-16 75.1
Msa0314690 MtrunA17_Chr8g0351011 41.818 110 48 3 48 157 64 157 3.74e-16 74.7
Msa0314690 MtrunA17_Chr7g0250481 35.294 136 72 5 26 157 30 153 2.15e-15 72.8
Msa0314690 MtrunA17_Chr7g0246451 36.429 140 68 5 19 157 32 151 2.44e-15 72.4
Msa0314690 MtrunA17_Chr3g0079971 34.132 167 77 7 3 157 1 146 2.68e-15 72.4
Msa0314690 MtrunA17_Chr3g0143251 34.868 152 78 6 11 157 15 150 5.24e-15 71.6
Msa0314690 MtrunA17_Chr5g0407701 35.625 160 85 6 3 157 1 147 1.71e-14 70.1
Msa0314690 MtrunA17_Chr3g0143241 33.088 136 71 6 24 157 33 150 2.21e-14 69.7
Msa0314690 MtrunA17_Chr4g0026641 30.921 152 89 5 6 157 7 142 2.68e-14 69.3
Msa0314690 MtrunA17_Chr8g0376841 34.247 146 72 4 19 157 33 161 3.20e-14 69.3
Msa0314690 MtrunA17_Chr5g0398311 34.426 122 64 3 41 160 52 159 6.12e-14 68.6
Msa0314690 MtrunA17_Chr3g0105461 34.965 143 76 5 18 159 25 151 1.30e-13 67.0
Msa0314690 MtrunA17_Chr8g0334491 35.000 140 68 6 20 157 27 145 1.33e-13 67.4
Msa0314690 MtrunA17_Chr6g0470851 37.500 112 50 5 48 157 54 147 2.73e-13 66.6
Msa0314690 MtrunA17_Chr4g0057471 39.175 97 49 2 61 157 6 92 3.81e-13 66.2
Msa0314690 MtrunA17_Chr2g0301901 37.594 133 65 6 1 122 1 126 3.82e-13 63.2
Msa0314690 MtrunA17_Chr8g0334521 31.579 152 85 4 6 157 18 150 4.13e-13 66.2
Msa0314690 MtrunA17_Chr1g0146251 32.143 168 76 7 6 157 2 147 4.96e-13 65.9
Msa0314690 MtrunA17_Chr7g0250371 33.775 151 82 5 11 157 18 154 5.05e-13 65.9
Msa0314690 MtrunA17_Chr6g0470881 37.500 112 50 5 48 157 54 147 6.17e-13 65.5
Msa0314690 MtrunA17_Chr7g0250391 33.333 156 86 5 6 157 12 153 7.35e-13 65.5
Msa0314690 MtrunA17_Chr3g0103061 28.947 152 94 4 12 157 11 154 8.10e-13 64.3
Msa0314690 MtrunA17_Chr1g0146271 33.333 138 73 4 20 157 29 147 8.73e-13 65.1
Msa0314690 MtrunA17_Chr4g0035871 40.789 76 43 1 43 118 12 85 1.03e-12 62.4
Msa0314690 MtrunA17_Chr7g0266051 36.283 113 56 3 45 157 13 109 1.59e-12 64.3
Msa0314690 MtrunA17_Chr4g0057531 28.986 138 84 3 24 157 30 157 3.19e-12 63.5
Msa0314690 MtrunA17_Chr3g0120521 28.148 135 84 3 28 157 31 157 4.24e-12 63.2
Msa0314690 MtrunA17_Chr7g0227991 31.126 151 81 6 9 157 20 149 5.20e-12 62.8
Msa0314690 MtrunA17_Chr7g0261681 38.202 89 46 2 67 155 1 80 5.74e-12 58.9
Msa0314690 MtrunA17_Chr1g0189561 28.916 166 85 7 5 157 6 151 5.76e-12 62.8
Msa0314690 MtrunA17_Chr8g0346351 29.870 154 85 6 6 157 15 147 6.22e-12 60.5
Msa0314690 MtrunA17_Chr4g0076611 37.363 91 48 2 67 157 1 82 6.25e-12 62.8
Msa0314690 MtrunA17_Chr3g0143021 34.783 92 46 2 66 157 6 83 1.13e-11 58.5
Msa0314690 MtrunA17_Chr6g0480721 37.363 91 40 2 67 157 5 78 1.21e-11 61.6
Msa0314690 MtrunA17_Chr7g0250411 33.775 151 82 5 11 157 18 154 1.51e-11 61.6
Msa0314690 MtrunA17_Chr3g0136151 32.836 134 69 4 24 157 34 146 2.33e-11 60.8
Msa0314690 MtrunA17_Chr7g0250461 33.775 151 82 5 11 157 18 154 5.13e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0314690 AT5G45650.2 53.425 146 59 3 20 157 19 163 1.47e-43 153
Msa0314690 AT5G45650.1 53.425 146 59 3 20 157 19 163 1.47e-43 153
Msa0314690 AT4G21630.1 31.361 169 96 4 3 157 1 163 6.39e-18 80.5
Msa0314690 AT5G03620.2 36.538 156 78 5 8 159 11 149 7.57e-18 80.1
Msa0314690 AT5G03620.1 36.538 156 78 5 8 159 11 149 9.40e-18 79.7
Msa0314690 AT4G21650.1 35.075 134 81 3 24 157 38 165 1.58e-17 79.3
Msa0314690 AT4G21640.1 32.836 134 86 2 24 157 38 167 2.47e-16 75.9
Msa0314690 AT4G10520.1 33.951 162 80 7 6 157 1 145 2.71e-16 75.5
Msa0314690 AT4G10540.1 30.827 133 78 4 25 157 28 146 5.65e-16 74.7
Msa0314690 AT4G10550.3 30.882 136 80 4 22 157 45 166 1.46e-15 73.6
Msa0314690 AT4G10550.1 30.882 136 80 4 22 157 29 150 1.55e-15 73.6
Msa0314690 AT1G66210.1 31.579 152 89 4 6 157 20 156 1.59e-15 73.6
Msa0314690 AT4G10530.1 33.824 136 70 5 25 157 27 145 1.60e-15 73.6
Msa0314690 AT5G58830.1 34.810 158 74 7 8 157 10 146 2.50e-15 72.8
Msa0314690 AT4G00230.2 35.878 131 63 6 28 157 38 148 2.52e-15 72.8
Msa0314690 AT4G00230.1 35.878 131 63 6 28 157 38 148 2.62e-15 72.8
Msa0314690 AT5G11940.1 30.519 154 91 4 6 157 14 153 2.63e-15 72.8
Msa0314690 AT3G46850.1 35.714 154 78 6 8 157 10 146 5.59e-15 72.0
Msa0314690 AT4G10510.3 31.579 133 77 4 25 157 32 150 6.39e-15 71.6
Msa0314690 AT5G58840.2 34.416 154 81 5 8 157 11 148 6.91e-15 71.6
Msa0314690 AT5G45640.1 42.268 97 43 2 74 157 37 133 8.49e-15 71.2
Msa0314690 AT1G32950.1 26.712 146 93 3 12 157 14 145 8.69e-15 71.2
Msa0314690 AT1G66220.1 33.083 133 75 3 25 157 35 153 1.09e-14 70.9
Msa0314690 AT4G10510.1 32.061 131 75 4 27 157 22 138 1.19e-14 70.9
Msa0314690 AT2G04160.1 31.206 141 82 4 22 157 26 156 1.35e-14 70.9
Msa0314690 AT5G58840.3 34.416 154 81 5 8 157 11 148 1.44e-14 70.5
Msa0314690 AT5G58820.1 36.184 152 76 5 10 157 8 142 1.55e-14 70.5
Msa0314690 AT1G32940.3 31.618 136 79 4 22 157 24 145 1.94e-14 70.1
Msa0314690 AT1G32940.1 31.618 136 79 4 22 157 24 145 2.46e-14 70.1
Msa0314690 AT5G58840.1 36.765 136 70 4 22 157 29 148 3.92e-14 69.3
Msa0314690 AT3G46840.1 34.416 154 80 6 8 157 11 147 6.14e-14 68.9
Msa0314690 AT1G32960.1 30.827 133 78 4 25 157 30 148 9.53e-14 68.2
Msa0314690 AT4G26330.2 38.384 99 50 2 59 157 13 100 1.00e-13 68.2
Msa0314690 AT4G26330.1 38.144 97 49 2 59 155 13 98 2.48e-13 67.0
Msa0314690 AT5G59090.2 34.815 135 71 4 23 157 28 145 2.85e-13 67.0
Msa0314690 AT5G59090.1 34.815 135 71 4 23 157 28 145 2.85e-13 67.0
Msa0314690 AT5G59100.1 35.294 136 67 4 24 157 31 147 3.15e-13 66.6
Msa0314690 AT4G21323.1 31.206 141 85 3 17 157 70 198 6.60e-13 65.9
Msa0314690 AT5G59810.1 32.090 134 78 4 28 157 42 166 1.16e-12 65.1
Msa0314690 AT5G59120.1 35.252 139 71 4 20 157 24 144 2.08e-12 64.3
Msa0314690 AT4G10550.4 34.343 99 53 3 59 157 8 94 3.23e-12 63.9
Msa0314690 AT4G10550.2 34.343 99 53 3 59 157 8 94 3.23e-12 63.9
Msa0314690 AT5G59090.3 34.815 135 69 5 23 157 28 143 1.11e-11 62.4
Msa0314690 AT4G15040.2 40.708 113 45 5 48 157 14 107 1.65e-11 62.0
Msa0314690 AT4G15040.1 40.708 113 45 5 48 157 14 107 1.65e-11 62.0
Msa0314690 AT1G04110.1 32.051 156 85 4 11 157 6 149 2.29e-11 61.6
Msa0314690 AT4G10510.4 34.343 99 53 3 59 157 8 94 2.31e-11 61.2
Msa0314690 AT5G59190.1 40.000 120 53 4 41 157 3 106 2.97e-11 61.2
Msa0314690 AT5G59130.2 36.885 122 63 6 7 122 12 125 6.56e-11 60.1
Msa0314690 AT5G59130.4 36.885 122 63 6 7 122 12 125 7.03e-11 60.1
Msa0314690 AT1G32940.4 36.458 96 49 3 62 157 11 94 7.22e-11 60.1
Msa0314690 AT1G32940.2 36.458 96 49 3 62 157 11 94 7.22e-11 60.1

Find 27 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTACCTGAGAGATTAT+TGG 0.253654 2_4:-10589155 None:intergenic
ACATCACTCTTATTTGCTTT+TGG 0.269627 2_4:+10589039 Msa0314690:CDS
CAGGTTTATCTAGTTGAATT+TGG 0.282454 2_4:+10588971 Msa0314690:intron
CAAGTCTCTATTTGTCTCAT+TGG 0.326154 2_4:-10589461 None:intergenic
GAGAGATTATTGGCTTCATT+AGG 0.377636 2_4:-10589145 None:intergenic
GAATTTGGAGAGCACAATAA+TGG 0.382105 2_4:+10588986 Msa0314690:CDS
AGTTATAAACACACTTTCAA+TGG 0.395631 2_4:+10589103 Msa0314690:CDS
TTGTTAGCCAAAGCAAAATA+TGG 0.399294 2_4:+10589481 Msa0314690:CDS
CTTCCTCCTCCTCCTTCCAT+TGG 0.427515 2_4:+10588839 Msa0314690:CDS
TATGGTCAAGATATTATAGT+AGG 0.431882 2_4:+10589499 Msa0314690:CDS
TGTGTTTATAACTGTAAAGA+AGG 0.440640 2_4:-10589093 None:intergenic
TTAGATATTCAAGTACACTA+TGG 0.471206 2_4:+10588788 Msa0314690:exon
AAGAAACTGAGGACGAAGCT+AGG 0.488704 2_4:+10589065 Msa0314690:CDS
AATGAAGCCAATAATCTCTC+AGG 0.488976 2_4:+10589148 Msa0314690:CDS
AGACCAATGGAAGGAGGAGG+AGG 0.501223 2_4:-10588842 None:intergenic
AGAAACTGAGGACGAAGCTA+GGG 0.526850 2_4:+10589066 Msa0314690:CDS
TAATATGAAACAGGGATGGA+AGG 0.530717 2_4:+10589331 Msa0314690:intron
ATAGTAGGAATGATTGATAG+TGG 0.536363 2_4:+10589514 Msa0314690:CDS
CACAAAATTCCATGACCTTG+TGG 0.552334 2_4:-10589401 None:intergenic
GTGTTTATAACTGTAAAGAA+GGG 0.587597 2_4:-10589092 None:intergenic
CATTGCATACCACAAGGTCA+TGG 0.599661 2_4:+10589392 Msa0314690:CDS
ATGAGACCAATGGAAGGAGG+AGG 0.606732 2_4:-10588845 None:intergenic
TGGTGCATGAGACCAATGGA+AGG 0.628951 2_4:-10588851 None:intergenic
TGAAACAGGGATGGAAGGAG+TGG 0.644160 2_4:+10589336 Msa0314690:intron
TGCATGAGACCAATGGAAGG+AGG 0.668327 2_4:-10588848 None:intergenic
GCAATGAGTATAACTTTGTG+TGG 0.669423 2_4:-10589375 None:intergenic
TATACTCATTGCATACCACA+AGG 0.724687 2_4:+10589386 Msa0314690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATTAATATGAAAC+AGG + chr2_4:10589322-10589341 Msa0314690:intron 10.0%
!! AAATTAATTAATATGAAACA+GGG + chr2_4:10589323-10589342 Msa0314690:intron 10.0%
!!! TTTTTGTTATAATATATATG+TGG - chr2_4:10589550-10589569 None:intergenic 10.0%
!!! ATAATTTTTAAAAAAATCTC+TGG - chr2_4:10589606-10589625 None:intergenic 10.0%
!!! GAGATTTTTTTAAAAATTAT+AGG + chr2_4:10589606-10589625 Msa0314690:intron 10.0%
!! AAAATTAATTAATATGAAAC+AGG + chr2_4:10589322-10589341 Msa0314690:intron 10.0%
!! AAATTAATTAATATGAAACA+GGG + chr2_4:10589323-10589342 Msa0314690:intron 10.0%
!!! TTTTTGTTATAATATATATG+TGG - chr2_4:10589550-10589569 None:intergenic 10.0%
!!! ATAATTTTTAAAAAAATCTC+TGG - chr2_4:10589606-10589625 None:intergenic 10.0%
!!! GAGATTTTTTTAAAAATTAT+AGG + chr2_4:10589606-10589625 Msa0314690:intron 10.0%
!! CAAAAAATACTATAATCATA+GGG - chr2_4:10589650-10589669 None:intergenic 15.0%
!! CAAAAAATACTATAATCATA+GGG - chr2_4:10589650-10589669 None:intergenic 15.0%
!! ATCTAGGAATTCATATTTAT+TGG + chr2_4:10588938-10588957 Msa0314690:intron 20.0%
!! CCAAAAAATACTATAATCAT+AGG - chr2_4:10589651-10589670 None:intergenic 20.0%
!!! CCTATGATTATAGTATTTTT+TGG + chr2_4:10589648-10589667 Msa0314690:intron 20.0%
!! ATCTAGGAATTCATATTTAT+TGG + chr2_4:10588938-10588957 Msa0314690:intron 20.0%
!! CCAAAAAATACTATAATCAT+AGG - chr2_4:10589651-10589670 None:intergenic 20.0%
!!! CCTATGATTATAGTATTTTT+TGG + chr2_4:10589648-10589667 Msa0314690:intron 20.0%
! TTAGATATTCAAGTACACTA+TGG + chr2_4:10588788-10588807 Msa0314690:exon 25.0%
!! ATGAAAGACCTGATTATTTT+TGG - chr2_4:10588874-10588893 None:intergenic 25.0%
!! ATTTATTGGATTTTTGTCAC+AGG + chr2_4:10588952-10588971 Msa0314690:intron 25.0%
! GTGTTTATAACTGTAAAGAA+GGG - chr2_4:10589095-10589114 None:intergenic 25.0%
! TGTGTTTATAACTGTAAAGA+AGG - chr2_4:10589096-10589115 None:intergenic 25.0%
! AGTTATAAACACACTTTCAA+TGG + chr2_4:10589103-10589122 Msa0314690:CDS 25.0%
! TAATTAATATGAAACAGGGA+TGG + chr2_4:10589327-10589346 Msa0314690:intron 25.0%
!!! TCATTGGTTTTTTCTTCAAA+AGG - chr2_4:10589448-10589467 None:intergenic 25.0%
! TATGGTCAAGATATTATAGT+AGG + chr2_4:10589499-10589518 Msa0314690:CDS 25.0%
! TTAGATATTCAAGTACACTA+TGG + chr2_4:10588788-10588807 Msa0314690:exon 25.0%
!! ATGAAAGACCTGATTATTTT+TGG - chr2_4:10588874-10588893 None:intergenic 25.0%
!! ATTTATTGGATTTTTGTCAC+AGG + chr2_4:10588952-10588971 Msa0314690:intron 25.0%
! GTGTTTATAACTGTAAAGAA+GGG - chr2_4:10589095-10589114 None:intergenic 25.0%
! TGTGTTTATAACTGTAAAGA+AGG - chr2_4:10589096-10589115 None:intergenic 25.0%
! AGTTATAAACACACTTTCAA+TGG + chr2_4:10589103-10589122 Msa0314690:CDS 25.0%
! TAATTAATATGAAACAGGGA+TGG + chr2_4:10589327-10589346 Msa0314690:intron 25.0%
!!! TCATTGGTTTTTTCTTCAAA+AGG - chr2_4:10589448-10589467 None:intergenic 25.0%
! TATGGTCAAGATATTATAGT+AGG + chr2_4:10589499-10589518 Msa0314690:CDS 25.0%
!!! CATAATCATTTTTTCTCCTC+TGG + chr2_4:10588909-10588928 Msa0314690:intron 30.0%
CAGGTTTATCTAGTTGAATT+TGG + chr2_4:10588971-10588990 Msa0314690:intron 30.0%
!! ACATCACTCTTATTTGCTTT+TGG + chr2_4:10589039-10589058 Msa0314690:CDS 30.0%
AACTTTACCTGAGAGATTAT+TGG - chr2_4:10589158-10589177 None:intergenic 30.0%
GCTACTTGAAAATTTGAATC+AGG + chr2_4:10589212-10589231 Msa0314690:intron 30.0%
TTGTTAGCCAAAGCAAAATA+TGG + chr2_4:10589481-10589500 Msa0314690:CDS 30.0%
! ATCTTGACCATATTTTGCTT+TGG - chr2_4:10589491-10589510 None:intergenic 30.0%
ATAGTAGGAATGATTGATAG+TGG + chr2_4:10589514-10589533 Msa0314690:CDS 30.0%
!!! CATAATCATTTTTTCTCCTC+TGG + chr2_4:10588909-10588928 Msa0314690:intron 30.0%
CAGGTTTATCTAGTTGAATT+TGG + chr2_4:10588971-10588990 Msa0314690:intron 30.0%
!! ACATCACTCTTATTTGCTTT+TGG + chr2_4:10589039-10589058 Msa0314690:CDS 30.0%
AACTTTACCTGAGAGATTAT+TGG - chr2_4:10589158-10589177 None:intergenic 30.0%
GCTACTTGAAAATTTGAATC+AGG + chr2_4:10589212-10589231 Msa0314690:intron 30.0%
TTGTTAGCCAAAGCAAAATA+TGG + chr2_4:10589481-10589500 Msa0314690:CDS 30.0%
! ATCTTGACCATATTTTGCTT+TGG - chr2_4:10589491-10589510 None:intergenic 30.0%
ATAGTAGGAATGATTGATAG+TGG + chr2_4:10589514-10589533 Msa0314690:CDS 30.0%
CTCATGCACCAAAAATAATC+AGG + chr2_4:10588863-10588882 Msa0314690:CDS 35.0%
ATTCCTAGATAGAAATCCAG+AGG - chr2_4:10588928-10588947 None:intergenic 35.0%
! GAATTTGGAGAGCACAATAA+TGG + chr2_4:10588986-10589005 Msa0314690:CDS 35.0%
! GCTTTTGGTAAAAGAAACTG+AGG + chr2_4:10589054-10589073 Msa0314690:CDS 35.0%
!! GAGAGATTATTGGCTTCATT+AGG - chr2_4:10589148-10589167 None:intergenic 35.0%
AATGAAGCCAATAATCTCTC+AGG + chr2_4:10589148-10589167 Msa0314690:CDS 35.0%
TAATATGAAACAGGGATGGA+AGG + chr2_4:10589331-10589350 Msa0314690:intron 35.0%
GCAATGAGTATAACTTTGTG+TGG - chr2_4:10589378-10589397 None:intergenic 35.0%
TATACTCATTGCATACCACA+AGG + chr2_4:10589386-10589405 Msa0314690:CDS 35.0%
! ACAAGGTCATGGAATTTTGT+GGG + chr2_4:10589403-10589422 Msa0314690:CDS 35.0%
CAAGTCTCTATTTGTCTCAT+TGG - chr2_4:10589464-10589483 None:intergenic 35.0%
CTCATGCACCAAAAATAATC+AGG + chr2_4:10588863-10588882 Msa0314690:CDS 35.0%
ATTCCTAGATAGAAATCCAG+AGG - chr2_4:10588928-10588947 None:intergenic 35.0%
! GAATTTGGAGAGCACAATAA+TGG + chr2_4:10588986-10589005 Msa0314690:CDS 35.0%
! GCTTTTGGTAAAAGAAACTG+AGG + chr2_4:10589054-10589073 Msa0314690:CDS 35.0%
!! GAGAGATTATTGGCTTCATT+AGG - chr2_4:10589148-10589167 None:intergenic 35.0%
AATGAAGCCAATAATCTCTC+AGG + chr2_4:10589148-10589167 Msa0314690:CDS 35.0%
TAATATGAAACAGGGATGGA+AGG + chr2_4:10589331-10589350 Msa0314690:intron 35.0%
GCAATGAGTATAACTTTGTG+TGG - chr2_4:10589378-10589397 None:intergenic 35.0%
TATACTCATTGCATACCACA+AGG + chr2_4:10589386-10589405 Msa0314690:CDS 35.0%
! ACAAGGTCATGGAATTTTGT+GGG + chr2_4:10589403-10589422 Msa0314690:CDS 35.0%
CAAGTCTCTATTTGTCTCAT+TGG - chr2_4:10589464-10589483 None:intergenic 35.0%
!! TTTTTGGTGCATGAGACCAA+TGG - chr2_4:10588858-10588877 None:intergenic 40.0%
TCTCCTCTGGATTTCTATCT+AGG + chr2_4:10588922-10588941 Msa0314690:intron 40.0%
CACAAAATTCCATGACCTTG+TGG - chr2_4:10589404-10589423 None:intergenic 40.0%
! CACAAGGTCATGGAATTTTG+TGG + chr2_4:10589402-10589421 Msa0314690:CDS 40.0%
! CAAGGTCATGGAATTTTGTG+GGG + chr2_4:10589404-10589423 Msa0314690:CDS 40.0%
!! TTTTTGGTGCATGAGACCAA+TGG - chr2_4:10588858-10588877 None:intergenic 40.0%
TCTCCTCTGGATTTCTATCT+AGG + chr2_4:10588922-10588941 Msa0314690:intron 40.0%
CACAAAATTCCATGACCTTG+TGG - chr2_4:10589404-10589423 None:intergenic 40.0%
! CACAAGGTCATGGAATTTTG+TGG + chr2_4:10589402-10589421 Msa0314690:CDS 40.0%
! CAAGGTCATGGAATTTTGTG+GGG + chr2_4:10589404-10589423 Msa0314690:CDS 40.0%
AAGAAACTGAGGACGAAGCT+AGG + chr2_4:10589065-10589084 Msa0314690:CDS 45.0%
AGAAACTGAGGACGAAGCTA+GGG + chr2_4:10589066-10589085 Msa0314690:CDS 45.0%
CATTGCATACCACAAGGTCA+TGG + chr2_4:10589392-10589411 Msa0314690:CDS 45.0%
AAGAAACTGAGGACGAAGCT+AGG + chr2_4:10589065-10589084 Msa0314690:CDS 45.0%
AGAAACTGAGGACGAAGCTA+GGG + chr2_4:10589066-10589085 Msa0314690:CDS 45.0%
CATTGCATACCACAAGGTCA+TGG + chr2_4:10589392-10589411 Msa0314690:CDS 45.0%
!! ACAAAATATAAAAATTAATT+TGG - chr2_4:10589271-10589290 None:intergenic 5.0%
!! ACAAAATATAAAAATTAATT+TGG - chr2_4:10589271-10589290 None:intergenic 5.0%
ATGAGACCAATGGAAGGAGG+AGG - chr2_4:10588848-10588867 None:intergenic 50.0%
TGCATGAGACCAATGGAAGG+AGG - chr2_4:10588851-10588870 None:intergenic 50.0%
TGGTGCATGAGACCAATGGA+AGG - chr2_4:10588854-10588873 None:intergenic 50.0%
TGAAACAGGGATGGAAGGAG+TGG + chr2_4:10589336-10589355 Msa0314690:intron 50.0%
ATGAGACCAATGGAAGGAGG+AGG - chr2_4:10588848-10588867 None:intergenic 50.0%
TGCATGAGACCAATGGAAGG+AGG - chr2_4:10588851-10588870 None:intergenic 50.0%
TGGTGCATGAGACCAATGGA+AGG - chr2_4:10588854-10588873 None:intergenic 50.0%
TGAAACAGGGATGGAAGGAG+TGG + chr2_4:10589336-10589355 Msa0314690:intron 50.0%
CTTCCTCCTCCTCCTTCCAT+TGG + chr2_4:10588839-10588858 Msa0314690:CDS 55.0%
AGACCAATGGAAGGAGGAGG+AGG - chr2_4:10588845-10588864 None:intergenic 55.0%
CTTCCTCCTCCTCCTTCCAT+TGG + chr2_4:10588839-10588858 Msa0314690:CDS 55.0%
AGACCAATGGAAGGAGGAGG+AGG - chr2_4:10588845-10588864 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 10588782 10589721 10588782 ID=Msa0314690;Name=Msa0314690
chr2_4 mRNA 10588782 10589721 10588782 ID=Msa0314690-mRNA-1;Parent=Msa0314690;Name=Msa0314690-mRNA-1;_AED=0.46;_eAED=0.46;_QI=25|0.5|0.4|0.6|1|1|5|0|163
chr2_4 exon 10588782 10588884 10588782 ID=Msa0314690-mRNA-1:exon:4045;Parent=Msa0314690-mRNA-1
chr2_4 exon 10588974 10589169 10588974 ID=Msa0314690-mRNA-1:exon:4046;Parent=Msa0314690-mRNA-1
chr2_4 exon 10589344 10589535 10589344 ID=Msa0314690-mRNA-1:exon:4047;Parent=Msa0314690-mRNA-1
chr2_4 exon 10589677 10589683 10589677 ID=Msa0314690-mRNA-1:exon:4048;Parent=Msa0314690-mRNA-1
chr2_4 exon 10589703 10589721 10589703 ID=Msa0314690-mRNA-1:exon:4049;Parent=Msa0314690-mRNA-1
chr2_4 five_prime_UTR 10588782 10588806 10588782 ID=Msa0314690-mRNA-1:five_prime_utr;Parent=Msa0314690-mRNA-1
chr2_4 CDS 10588807 10588884 10588807 ID=Msa0314690-mRNA-1:cds;Parent=Msa0314690-mRNA-1
chr2_4 CDS 10588974 10589169 10588974 ID=Msa0314690-mRNA-1:cds;Parent=Msa0314690-mRNA-1
chr2_4 CDS 10589344 10589535 10589344 ID=Msa0314690-mRNA-1:cds;Parent=Msa0314690-mRNA-1
chr2_4 CDS 10589677 10589683 10589677 ID=Msa0314690-mRNA-1:cds;Parent=Msa0314690-mRNA-1
chr2_4 CDS 10589703 10589721 10589703 ID=Msa0314690-mRNA-1:cds;Parent=Msa0314690-mRNA-1
Gene Sequence

>Msa0314690

ATGGCAATGAACAACGTTTCAATGACATGTCTCTTCCTCCTCCTCCTTCCATTGGTCTCATGCACCAAAAATAATCAGGTTTATCTAGTTGAATTTGGAGAGCACAATAATGGAGATAAAACACTGCATGAAATAGAGAATACACATCACTCTTATTTGCTTTTGGTAAAAGAAACTGAGGACGAAGCTAGGGTTTCCCTTCTTTACAGTTATAAACACACTTTCAATGGTTTTGCAGCATTACTTACACCTAATGAAGCCAATAATCTCTCAGGGATGGAAGGAGTGGTCTCTGTGCGCAAGAGCCACACAAAGTTATACTCATTGCATACCACAAGGTCATGGAATTTTGTGGGGTTAGATGAGTCATTTGATCCTTTTGAAGAAAAAACCAATGAGACAAATAGAGACTTGTTAGCCAAAGCAAAATATGGTCAAGATATTATAGTAGGAATGATTGATAGTGACATAAAATTGAATCTTGCAAATTGA

Protein sequence

>Msa0314690

MAMNNVSMTCLFLLLLPLVSCTKNNQVYLVEFGEHNNGDKTLHEIENTHHSYLLLVKETEDEARVSLLYSYKHTFNGFAALLTPNEANNLSGMEGVVSVRKSHTKLYSLHTTRSWNFVGLDESFDPFEEKTNETNRDLLAKAKYGQDIIVGMIDSDIKLNLAN*