AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501920 MtrunA17_Chr3g0099891 84.706 340 29 2 40 379 51 367 0.0 560
Msa0501920 MtrunA17_Chr3g0099901 70.655 351 85 5 40 379 55 398 5.37e-152 438
Msa0501920 MtrunA17_Chr2g0291201 40.385 312 172 7 78 379 59 366 2.67e-66 217
Msa0501920 MtrunA17_Chr4g0001991 37.465 355 206 10 42 390 98 442 1.43e-56 193
Msa0501920 MtrunA17_Chr7g0275731 40.333 300 157 9 75 366 101 386 9.92e-51 177
Msa0501920 MtrunA17_Chr1g0212321 36.201 279 158 6 107 379 136 400 6.33e-48 169
Msa0501920 MtrunA17_Chr3g0130931 36.446 332 173 13 73 384 57 370 5.01e-47 166
Msa0501920 MtrunA17_Chr1g0165201 35.842 279 160 6 107 379 118 383 1.55e-43 157
Msa0501920 MtrunA17_Chr2g0307991 36.296 270 147 8 118 373 60 318 2.31e-42 153
Msa0501920 MtrunA17_Chr1g0210201 37.124 299 159 11 75 367 94 369 3.78e-41 151
Msa0501920 MtrunA17_Chr2g0308001 36.296 270 150 8 117 373 58 318 5.39e-41 150
Msa0501920 MtrunA17_Chr3g0095891 37.716 289 154 11 110 379 90 371 1.53e-39 146
Msa0501920 MtrunA17_Chr5g0442921 36.111 288 160 8 110 378 184 466 1.54e-38 145
Msa0501920 MtrunA17_Chr5g0419291 36.957 276 149 11 100 364 70 331 7.06e-37 139
Msa0501920 MtrunA17_Chr5g0435871 36.226 265 137 10 116 364 88 336 1.03e-34 133
Msa0501920 MtrunA17_Chr5g0395931 34.182 275 161 9 116 381 87 350 1.50e-34 132
Msa0501920 MtrunA17_Chr2g0310831 29.721 323 191 9 46 353 31 332 1.65e-34 132
Msa0501920 MtrunA17_Chr2g0310821 33.451 284 164 10 116 390 107 374 2.13e-34 132
Msa0501920 MtrunA17_Chr5g0435971 36.226 265 137 10 116 364 85 333 3.80e-34 131
Msa0501920 MtrunA17_Chr8g0390761 33.333 285 162 9 92 365 88 355 1.14e-33 130
Msa0501920 MtrunA17_Chr4g0023351 37.168 226 118 8 117 330 58 271 2.05e-33 126
Msa0501920 MtrunA17_Chr3g0087851 37.165 261 143 10 116 364 87 338 3.30e-33 129
Msa0501920 MtrunA17_Chr5g0395911 33.818 275 161 10 116 381 66 328 6.20e-33 127
Msa0501920 MtrunA17_Chr5g0415951 33.684 285 163 11 104 373 75 348 1.72e-32 127
Msa0501920 MtrunA17_Chr2g0310801 33.219 292 163 11 116 390 89 365 3.86e-32 125
Msa0501920 MtrunA17_Chr8g0352661 35.714 266 150 10 116 371 85 339 8.58e-32 125
Msa0501920 MtrunA17_Chr8g0352671 34.601 263 147 8 116 364 88 339 3.26e-31 123
Msa0501920 MtrunA17_Chr6g0484901 32.153 339 189 11 64 379 85 405 1.40e-30 122
Msa0501920 MtrunA17_Chr8g0386441 34.470 264 152 9 116 369 85 337 1.89e-30 121
Msa0501920 MtrunA17_Chr2g0333991 30.259 347 202 13 42 373 25 346 2.64e-30 120
Msa0501920 MtrunA17_Chr2g0311451 31.402 328 186 12 42 354 25 328 1.27e-29 119
Msa0501920 MtrunA17_Chr5g0395871 34.328 268 154 10 116 373 80 335 2.53e-29 117
Msa0501920 MtrunA17_Chr6g0487471 34.007 297 168 11 82 364 54 336 9.98e-29 116
Msa0501920 MtrunA17_Chr8g0353261 31.325 332 195 11 45 369 33 338 5.12e-28 114
Msa0501920 MtrunA17_Chr1g0164401 29.674 337 193 12 45 369 29 333 8.23e-28 113
Msa0501920 MtrunA17_Chr6g0457401 32.219 329 189 14 47 362 29 336 4.06e-27 112
Msa0501920 MtrunA17_Chr6g0486981 29.577 355 205 14 32 369 19 345 1.10e-26 110
Msa0501920 MtrunA17_Chr1g0189381 34.066 273 136 13 115 361 67 321 1.68e-25 107
Msa0501920 MtrunA17_Chr3g0133071 29.360 344 213 9 47 383 35 355 6.27e-24 102
Msa0501920 MtrunA17_Chr2g0307461 31.734 271 154 12 118 371 71 327 2.49e-23 100
Msa0501920 MtrunA17_Chr4g0061641 35.510 245 134 9 132 364 69 301 3.89e-23 100
Msa0501920 MtrunA17_Chr3g0110191 29.710 276 164 10 124 383 93 354 8.85e-23 99.4
Msa0501920 MtrunA17_Chr2g0309561 27.390 387 200 14 44 369 44 410 4.04e-22 97.8
Msa0501920 MtrunA17_Chr2g0312941 32.117 274 144 11 118 363 88 347 1.70e-21 95.9
Msa0501920 MtrunA17_Chr7g0239001 31.227 269 148 12 120 368 62 313 2.28e-21 95.1
Msa0501920 MtrunA17_Chr3g0112051 30.038 263 156 10 120 368 76 324 4.72e-21 94.4
Msa0501920 MtrunA17_Chr4g0027681 30.072 276 162 9 116 371 76 340 9.28e-21 94.0
Msa0501920 MtrunA17_Chr1g0179751 28.179 291 175 10 113 381 104 382 1.38e-19 90.5
Msa0501920 MtrunA17_Chr7g0265331 27.758 281 166 9 115 372 79 345 3.43e-19 89.4
Msa0501920 MtrunA17_Chr4g0053721 27.208 283 174 11 108 377 71 334 6.12e-19 89.0
Msa0501920 MtrunA17_Chr5g0434411 27.719 285 171 10 120 383 84 354 1.50e-18 87.0
Msa0501920 MtrunA17_Chr6g0484731 25.705 319 202 11 64 367 139 437 3.93e-18 86.3
Msa0501920 MtrunA17_Chr2g0320621 28.387 310 168 10 96 371 51 340 8.77e-18 84.7
Msa0501920 MtrunA17_Chr7g0221681 27.143 280 162 10 115 368 70 333 1.60e-17 84.0
Msa0501920 MtrunA17_Chr5g0401601 27.106 273 169 10 108 368 79 333 1.71e-17 84.3
Msa0501920 MtrunA17_Chr7g0249451 27.217 327 183 13 74 361 13 323 4.63e-17 82.8
Msa0501920 MtrunA17_Chr5g0434441 27.622 286 172 11 120 383 71 343 3.57e-15 76.6
Msa0501920 MtrunA17_Chr3g0130741 28.214 280 160 16 108 373 75 327 5.40e-15 76.3
Msa0501920 MtrunA17_Chr8g0384731 28.214 280 161 14 108 373 64 317 5.77e-15 76.3
Msa0501920 MtrunA17_Chr5g0395891 32.821 195 112 8 173 358 20 204 1.23e-14 74.3
Msa0501920 MtrunA17_Chr4g0010951 30.165 242 135 14 86 306 26 254 3.43e-14 73.9
Msa0501920 MtrunA17_Chr1g0179091 27.869 244 135 8 116 353 50 258 7.12e-14 72.4
Msa0501920 MtrunA17_Chr4g0056211 28.522 291 166 12 117 371 74 358 1.02e-13 72.4
Msa0501920 MtrunA17_Chr3g0082281 32.584 178 107 5 199 369 53 224 6.63e-13 68.9
Msa0501920 MtrunA17_Chr1g0159791 29.268 164 100 5 108 263 48 203 6.75e-13 69.7
Msa0501920 MtrunA17_Chr8g0371371 29.740 269 142 13 118 365 113 355 8.08e-13 69.7
Msa0501920 MtrunA17_Chr8g0352681 40.000 90 46 2 116 205 86 167 9.16e-13 65.9
Msa0501920 MtrunA17_Chr7g0267171 24.483 290 181 11 116 378 89 367 1.62e-11 65.5
Msa0501920 MtrunA17_Chr8g0352691 32.386 176 98 8 208 372 2 167 3.18e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501920 AT5G10770.1 56.973 337 135 6 44 379 59 386 4.90e-126 372
Msa0501920 AT5G10760.1 47.619 336 154 8 44 377 62 377 9.21e-91 281
Msa0501920 AT1G79720.1 41.640 317 169 9 75 383 91 399 3.78e-60 202
Msa0501920 AT1G01300.1 39.009 323 170 10 75 383 96 405 4.55e-52 181
Msa0501920 AT3G20015.1 33.968 315 183 8 75 379 85 384 6.55e-47 167
Msa0501920 AT3G61820.1 41.219 279 146 8 107 375 124 394 9.67e-46 164
Msa0501920 AT2G03200.1 35.862 290 157 9 112 383 101 379 3.81e-45 162
Msa0501920 AT1G09750.1 30.702 342 210 10 37 369 29 352 5.97e-38 142
Msa0501920 AT1G25510.1 37.179 312 172 9 74 379 104 397 1.01e-37 142
Msa0501920 AT3G18490.1 35.821 268 150 6 106 367 150 401 4.51e-37 140
Msa0501920 AT5G33340.1 33.136 338 194 10 37 364 23 338 2.87e-36 137
Msa0501920 AT3G59080.1 35.439 285 159 9 110 374 162 441 3.07e-36 139
Msa0501920 AT2G42980.1 35.789 285 156 10 110 373 152 430 3.75e-36 138
Msa0501920 AT3G54400.1 31.190 311 183 11 73 376 51 337 8.32e-35 133
Msa0501920 AT3G25700.1 28.701 331 208 7 68 381 42 361 1.93e-34 132
Msa0501920 AT1G64830.1 30.194 361 205 14 41 383 22 353 5.22e-33 128
Msa0501920 AT3G12700.1 30.464 302 177 10 72 358 68 351 9.43e-31 122
Msa0501920 AT4G30040.1 33.829 269 128 8 118 363 85 326 6.81e-30 119
Msa0501920 AT1G31450.1 33.677 291 162 10 116 383 83 365 1.56e-29 119
Msa0501920 AT2G28040.2 30.888 259 149 6 115 367 53 287 3.95e-29 117
Msa0501920 AT2G28040.1 30.337 267 154 7 115 373 62 304 7.84e-29 116
Msa0501920 AT2G35615.1 27.027 370 227 11 37 383 18 367 5.08e-28 114
Msa0501920 AT5G07030.1 30.383 339 191 13 45 369 51 358 5.36e-28 115
Msa0501920 AT2G28220.1 30.000 280 154 10 118 383 67 318 1.06e-26 110
Msa0501920 AT2G28010.1 28.409 264 157 6 118 375 65 302 2.19e-25 106
Msa0501920 AT4G30030.1 31.879 298 158 13 79 361 44 311 7.41e-25 105
Msa0501920 AT1G66180.1 29.930 284 167 11 119 383 73 343 2.52e-24 104
Msa0501920 AT2G28225.1 29.771 262 144 9 118 367 67 300 2.84e-24 103
Msa0501920 AT2G28030.1 29.921 254 144 7 118 364 61 287 3.51e-24 103
Msa0501920 AT1G65240.1 28.669 293 172 11 115 389 71 344 3.56e-24 104
Msa0501920 AT2G23945.1 28.895 353 208 17 30 366 15 340 4.28e-24 103
Msa0501920 AT3G02740.1 29.537 281 153 14 116 373 83 341 6.83e-24 103
Msa0501920 AT3G02740.2 29.391 279 152 14 118 373 10 266 1.73e-23 101
Msa0501920 AT3G59080.2 30.634 284 138 8 110 374 162 405 2.57e-23 102
Msa0501920 AT5G43100.2 28.520 277 155 11 108 369 66 314 2.87e-21 95.9
Msa0501920 AT5G43100.1 28.520 277 155 11 108 369 66 314 2.93e-21 96.3
Msa0501920 AT5G02190.1 31.225 253 150 9 127 365 82 324 7.03e-21 94.4
Msa0501920 AT5G37540.1 28.846 260 158 10 124 367 86 334 1.04e-20 94.0
Msa0501920 AT5G36260.1 29.213 267 152 11 116 361 76 326 1.43e-20 93.6
Msa0501920 AT1G05840.1 27.301 326 185 12 82 374 35 341 1.09e-19 90.9
Msa0501920 AT2G39710.1 30.153 262 152 11 120 365 67 313 1.17e-19 90.5
Msa0501920 AT1G08210.1 29.749 279 161 10 115 372 81 345 2.21e-19 90.1
Msa0501920 AT1G08210.2 29.749 279 161 10 115 372 81 345 3.02e-19 89.7
Msa0501920 AT1G08210.3 29.749 279 161 10 115 372 129 393 3.04e-19 89.7
Msa0501920 AT1G08210.4 29.749 279 161 10 115 372 115 379 3.28e-19 89.7
Msa0501920 AT5G22850.1 28.723 282 160 10 115 371 78 343 5.72e-19 89.0
Msa0501920 AT3G50050.1 28.622 283 163 12 108 377 83 339 2.97e-18 87.0
Msa0501920 AT1G49050.3 24.306 288 197 9 99 375 184 461 7.05e-18 85.5
Msa0501920 AT1G49050.1 24.286 280 191 9 99 367 184 453 3.36e-17 84.0
Msa0501920 AT4G12920.1 27.376 263 160 10 118 373 58 296 6.41e-17 82.0
Msa0501920 AT2G36670.2 27.143 280 166 10 115 371 97 361 7.84e-17 82.4
Msa0501920 AT2G36670.1 26.990 289 172 11 106 371 94 366 2.01e-16 81.3
Msa0501920 AT3G51350.1 28.364 275 146 12 118 367 102 350 4.74e-16 80.1
Msa0501920 AT3G42550.1 26.562 320 164 14 64 372 28 287 5.09e-16 79.7
Msa0501920 AT2G36670.4 27.076 277 164 10 118 371 34 295 5.22e-16 79.7
Msa0501920 AT2G36670.3 27.076 277 164 10 118 371 34 295 5.22e-16 79.7
Msa0501920 AT1G77480.1 27.491 291 175 12 96 373 46 313 6.65e-16 79.7
Msa0501920 AT1G77480.2 27.645 293 172 13 96 373 46 313 7.89e-16 79.3
Msa0501920 AT5G45120.1 28.231 294 168 15 118 376 83 368 3.21e-15 77.4
Msa0501920 AT3G25700.2 26.705 176 113 4 68 237 42 207 9.53e-15 75.5
Msa0501920 AT4G33490.2 26.715 277 170 14 108 373 50 304 1.12e-14 75.5
Msa0501920 AT3G51340.4 25.602 332 197 13 63 369 47 353 1.38e-14 75.1
Msa0501920 AT4G33490.1 25.743 303 191 15 82 373 22 301 1.46e-14 75.1
Msa0501920 AT1G44130.1 30.455 220 120 12 110 315 41 241 3.42e-14 73.9
Msa0501920 AT4G35880.1 24.164 269 164 11 118 368 107 353 3.16e-11 65.5
Msa0501920 AT2G17760.1 27.652 264 155 12 118 365 104 347 3.31e-11 65.1
Msa0501920 AT4G35880.2 24.164 269 164 11 118 368 107 353 3.37e-11 65.1

Find 112 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATGCATATTGTTATAAT+TGG 0.147798 3_4:-43674787 None:intergenic
CCTTCCACTTCCAGCGTTAT+TGG 0.163422 3_4:+43676566 Msa0501920:CDS
GCAAAGTTACCAGCTATTTA+TGG 0.167151 3_4:+43674825 Msa0501920:CDS
GATACTTCGCCATTTCTTTC+CGG 0.217669 3_4:-43676832 None:intergenic
GCTATTTATGGTAACCATAT+TGG 0.282596 3_4:+43674837 Msa0501920:CDS
TTAACAAAAGCATGTGAATA+TGG 0.301372 3_4:+43676323 Msa0501920:CDS
GCGAAGTATCCAGCTGCTTC+GGG 0.312519 3_4:+43676845 Msa0501920:CDS
AATTGCGTCCGTTGGCGTTA+TGG 0.323670 3_4:-43676402 None:intergenic
AATAGTTCCCTGTTCCAATA+TGG 0.325471 3_4:-43674851 None:intergenic
TGATATTGAAAGCTTGGTTT+TGG 0.341030 3_4:-43676714 None:intergenic
TAACAATATGCATCAGGAAT+TGG 0.341210 3_4:+43674794 Msa0501920:CDS
GGCGAAGTATCCAGCTGCTT+CGG 0.345692 3_4:+43676844 Msa0501920:CDS
TTTGTTAATGCAGAACATTT+TGG 0.351134 3_4:-43676308 None:intergenic
GGCGCCACCGAAGGAGAAAA+TGG 0.359106 3_4:-43676741 None:intergenic
ACGCCAACGGACGCAATTGA+TGG 0.361135 3_4:+43676407 Msa0501920:CDS
GTTGGCCACCTTGTTATTAT+CGG 0.363494 3_4:-43676609 None:intergenic
CAATAAGAAGTAGACTTTGA+TGG 0.365088 3_4:-43675005 None:intergenic
GAAGTATCTGTGGGTATTCA+TGG 0.369472 3_4:-43672382 None:intergenic
TATGGTAACCATATTGGAAC+AGG 0.376024 3_4:+43674843 Msa0501920:CDS
GTTATTGGCCACCTCACATT+TGG 0.379377 3_4:+43676581 Msa0501920:CDS
TAGGGCTTGGTACTCCTAAA+AGG 0.381666 3_4:+43674883 Msa0501920:CDS
GGAGGATGATATTGAAAGCT+TGG 0.382168 3_4:-43676720 None:intergenic
GTTTGTTGGACGAAAGAGAT+TGG 0.382411 3_4:-43676506 None:intergenic
CTTTGCCATTGTTATTCAGT+TGG 0.387737 3_4:-43674689 None:intergenic
AATGGGTACCCACGCGGGTA+TGG 0.397711 3_4:+43672427 Msa0501920:CDS
AACGATGTCAAGACCGTAGA+AGG 0.398374 3_4:-43676678 None:intergenic
ATTGTTATAATTGGATAGCT+TGG 0.398482 3_4:-43674778 None:intergenic
GGCATGTCTGCCGGCATATT+AGG 0.407159 3_4:+43676470 Msa0501920:CDS
TTTGCCATTGTTATTCAGTT+GGG 0.407382 3_4:-43674688 None:intergenic
CTAGCCTTCGTCATGCATTC+CGG 0.407455 3_4:+43676813 Msa0501920:CDS
ACTACGTGAGATTGTGGATA+AGG 0.413646 3_4:-43676651 None:intergenic
TTCTTAAACTTGATAAAGAA+AGG 0.414261 3_4:+43674739 Msa0501920:CDS
AGTGTATTTAACGGCGTTGT+TGG 0.416296 3_4:-43676627 None:intergenic
TTATCCAACGAGGCGGGAAC+GGG 0.421392 3_4:+43672470 Msa0501920:CDS
TTCACGGCTGAAGTAACCTT+TGG 0.423045 3_4:-43676372 None:intergenic
ATGGGTACCCACGCGGGTAT+GGG 0.428837 3_4:+43672428 Msa0501920:CDS
GCGTTATGGTTAGTCGTTCA+CGG 0.441094 3_4:-43676388 None:intergenic
TCATGCATTCCGGAAAGAAA+TGG 0.441442 3_4:+43676823 Msa0501920:CDS
ATTTACTCAAGGATTGCAAC+CGG 0.441702 3_4:+43677149 Msa0501920:intron
TTTATCCAACGAGGCGGGAA+CGG 0.455424 3_4:+43672469 Msa0501920:CDS
ATTTGAAACCCCGAAGCAGC+TGG 0.463069 3_4:-43676854 None:intergenic
CAATTATAACAATATGCATC+AGG 0.473980 3_4:+43674788 Msa0501920:CDS
CAATACAACCAAGGTCTGTT+CGG 0.478376 3_4:+43676449 Msa0501920:CDS
CTACGTGAGATTGTGGATAA+GGG 0.480711 3_4:-43676650 None:intergenic
GGTCTGTTCGGCATGTCTGC+CGG 0.485877 3_4:+43676461 Msa0501920:CDS
TTGTTATTCAGTTGGGAACA+TGG 0.486548 3_4:-43674681 None:intergenic
TCTGCCGGCATATTAGGCCT+TGG 0.494138 3_4:+43676476 Msa0501920:CDS
AGTAACCTTTGGAGAAGGAT+TGG 0.501167 3_4:-43676361 None:intergenic
CCGCGGGTTACCCGTACAAT+GGG 0.501276 3_4:+43672410 Msa0501920:CDS
GTGGCCAATAACGCTGGAAG+TGG 0.517266 3_4:-43676570 None:intergenic
TGGGTACCCACGCGGGTATG+GGG 0.519836 3_4:+43672429 Msa0501920:CDS
TGTATTGCCCACAACCGAAA+AGG 0.522205 3_4:-43676433 None:intergenic
TTCTACGGTCTTGACATCGT+TGG 0.522510 3_4:+43676680 Msa0501920:CDS
TCACGTAGTAATTCCTTCTA+CGG 0.522886 3_4:+43676665 Msa0501920:CDS
GGATAAGGGAGTGTATTTAA+CGG 0.524324 3_4:-43676636 None:intergenic
TCTTAAACTTGATAAAGAAA+GGG 0.529667 3_4:+43674740 Msa0501920:CDS
GATACCCGTTCCCGCCTCGT+TGG 0.536047 3_4:-43672474 None:intergenic
TGTGAGGTGGCCAATAACGC+TGG 0.539085 3_4:-43676576 None:intergenic
GGAATTACTACGTGAGATTG+TGG 0.541847 3_4:-43676657 None:intergenic
CGCGGGTATTGAAGTATCTG+TGG 0.543767 3_4:-43672392 None:intergenic
ATATGGTTACCATAAATAGC+TGG 0.551184 3_4:-43674834 None:intergenic
TTAAGAATATCATCGTGTGT+TGG 0.554209 3_4:-43674723 None:intergenic
GTCAATGATGGCGCCACCGA+AGG 0.564071 3_4:-43676750 None:intergenic
ACGACCAAGGCCTAATATGC+CGG 0.564153 3_4:-43676480 None:intergenic
TCATATTTATCCAACGAGGC+GGG 0.567032 3_4:+43672464 Msa0501920:CDS
CGCGTGGGTACCCATTGTAC+GGG 0.570463 3_4:-43672420 None:intergenic
CAGACATGCCGAACAGACCT+TGG 0.571057 3_4:-43676457 None:intergenic
CCGCGTGGGTACCCATTGTA+CGG 0.571953 3_4:-43672421 None:intergenic
AAGTATCTGTGGGTATTCAT+GGG 0.572998 3_4:-43672381 None:intergenic
AAACCATCAATTGCGTCCGT+TGG 0.576106 3_4:-43676410 None:intergenic
TTAGATGTGGTACACAAGCA+TGG 0.577287 3_4:+43674657 Msa0501920:CDS
ATACTGGTAGTGATCTCACT+TGG 0.579914 3_4:+43674925 Msa0501920:CDS
CCCGCGGGTTACCCGTACAA+TGG 0.580214 3_4:+43672409 Msa0501920:CDS
TCATCTTGCTGTGTGTAACA+AGG 0.580818 3_4:-43674972 None:intergenic
GGTGGCGCCATCATTGACTC+TGG 0.585383 3_4:+43676755 Msa0501920:CDS
GCTGAAGTAACCTTTGGAGA+AGG 0.589343 3_4:-43676366 None:intergenic
GACAGTACCAGAGTCAATGA+TGG 0.592119 3_4:-43676762 None:intergenic
GTGTCTGCCCCATACCCGCG+TGG 0.595480 3_4:-43672436 None:intergenic
AGTGACCAATCCTTCTCCAA+AGG 0.597205 3_4:+43676356 Msa0501920:CDS
TTTACTCAAGGATTGCAACC+GGG 0.599071 3_4:+43677150 Msa0501920:intron
CACAGATACTTCAATACCCG+CGG 0.599121 3_4:+43672393 Msa0501920:CDS
TAGATGTGGTACACAAGCAT+GGG 0.609756 3_4:+43674658 Msa0501920:CDS
CGAAGTATCCAGCTGCTTCG+GGG 0.609858 3_4:+43676846 Msa0501920:CDS
AAGAAAAGCATCATTAGATG+TGG 0.610124 3_4:+43674644 Msa0501920:CDS
ACTCAACTATCTTCATCCAC+AGG 0.613837 3_4:+43675056 Msa0501920:CDS
CCAATAACGCTGGAAGTGGA+AGG 0.616792 3_4:-43676566 None:intergenic
CCCATTGTACGGGTAACCCG+CGG 0.622670 3_4:-43672410 None:intergenic
CTTTCCGGAATGCATGACGA+AGG 0.622682 3_4:-43676817 None:intergenic
ATCATATTTATCCAACGAGG+CGG 0.635515 3_4:+43672463 Msa0501920:CDS
GTGTAACAAGGACGAGCACA+AGG 0.637868 3_4:-43674960 None:intergenic
GCGGGTATTGAAGTATCTGT+GGG 0.646705 3_4:-43672391 None:intergenic
CGGTAGCTCCAAATGTGAGG+TGG 0.648081 3_4:-43676589 None:intergenic
CCATTGTACGGGTAACCCGC+GGG 0.648762 3_4:-43672409 None:intergenic
ACGACTAACCATAACGCCAA+CGG 0.663534 3_4:+43676394 Msa0501920:CDS
AAGAGATTGGATGACGACCA+AGG 0.664701 3_4:-43676493 None:intergenic
TGTTCCCAACTGAATAACAA+TGG 0.664710 3_4:+43674684 Msa0501920:CDS
CGTACAATGGGTACCCACGC+GGG 0.667130 3_4:+43672422 Msa0501920:CDS
TATCGGTAGCTCCAAATGTG+AGG 0.668784 3_4:-43676592 None:intergenic
TGTCTGCCCCATACCCGCGT+GGG 0.670692 3_4:-43672435 None:intergenic
CGAAGGCTAGCATAGGCAGA+CGG 0.674059 3_4:-43676800 None:intergenic
ACAGATACTTCAATACCCGC+GGG 0.679275 3_4:+43672394 Msa0501920:CDS
TGCATGACGAAGGCTAGCAT+AGG 0.681279 3_4:-43676807 None:intergenic
TGGAGCTACCGATAATAACA+AGG 0.681509 3_4:+43676601 Msa0501920:CDS
CCGTACAATGGGTACCCACG+CGG 0.683563 3_4:+43672421 Msa0501920:CDS
AGGCTAGCATAGGCAGACGG+CGG 0.684561 3_4:-43676797 None:intergenic
ATGGTAACCATATTGGAACA+GGG 0.688291 3_4:+43674844 Msa0501920:CDS
GGTTGTGGGCAATACAACCA+AGG 0.693092 3_4:+43676440 Msa0501920:CDS
ACTCTGGTACTGTCATTACA+CGG 0.698917 3_4:+43676771 Msa0501920:CDS
TCTCCAATGAGAAAAGCACC+CGG 0.699474 3_4:-43677168 None:intergenic
GCCACCGAAGGAGAAAATGG+AGG 0.718357 3_4:-43676738 None:intergenic
AGCTACCGATAATAACAAGG+TGG 0.756055 3_4:+43676604 Msa0501920:CDS
TGTATCATATTTATCCAACG+AGG 0.804553 3_4:+43672460 Msa0501920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAAATTAAATTAAAT+TGG - chr3_4:43673875-43673894 None:intergenic 0.0%
!! ATTATATTATATATTTATTA+TGG + chr3_4:43675086-43675105 Msa0501920:intron 0.0%
!!! TATTTTTTTTATTTTTAATA+TGG + chr3_4:43675466-43675485 Msa0501920:intron 0.0%
!!! ATTTTTTTTATTTTTAATAT+GGG + chr3_4:43675467-43675486 Msa0501920:intron 0.0%
!!! CTTTTGTTATTTTTTATAAA+AGG - chr3_4:43672702-43672721 None:intergenic 10.0%
!! ATTAAAGATATATATTCAAT+TGG - chr3_4:43674409-43674428 None:intergenic 10.0%
!!! TTTTATTATTAATAAAATGG+AGG + chr3_4:43675422-43675441 Msa0501920:intron 10.0%
!! AAGTTTATAAAAGAAAATTA+AGG + chr3_4:43675565-43675584 Msa0501920:intron 10.0%
!! GTTAAAATTAAATAAAATCA+AGG + chr3_4:43675592-43675611 Msa0501920:intron 10.0%
!! TACTGAAAAAAAAAAAATAT+AGG + chr3_4:43675729-43675748 Msa0501920:intron 10.0%
!! TATTATATAGATTTATGATG+AGG - chr3_4:43672640-43672659 None:intergenic 15.0%
!! AAATAACAAAAGATCAAATT+TGG + chr3_4:43672710-43672729 Msa0501920:intron 15.0%
!! TGAAATCTAAATACAAATTT+AGG + chr3_4:43672777-43672796 Msa0501920:intron 15.0%
!!! CAATTTTCTTTTTTATTTTG+AGG - chr3_4:43672833-43672852 None:intergenic 15.0%
!! CTCAAAATAAAAAAGAAAAT+TGG + chr3_4:43672831-43672850 Msa0501920:intron 15.0%
!! TATAAAAATAACTACAAAGA+GGG - chr3_4:43673057-43673076 None:intergenic 15.0%
!! ATATAAAAATAACTACAAAG+AGG - chr3_4:43673058-43673077 None:intergenic 15.0%
!! ATATAATAGTAGTATAGTTA+GGG - chr3_4:43673191-43673210 None:intergenic 15.0%
!!! TATACATATATTTTTTTTGG+TGG + chr3_4:43674273-43674292 Msa0501920:intron 15.0%
!!! TTAAAATGTCTCATTTTTAT+AGG + chr3_4:43675496-43675515 Msa0501920:intron 15.0%
!!! TTTTCTTTTATAAACTTTAC+AGG - chr3_4:43675562-43675581 None:intergenic 15.0%
!! TAAAGGATTAAACAAATTAA+GGG - chr3_4:43675954-43675973 None:intergenic 15.0%
!! TTAAAGGATTAAACAAATTA+AGG - chr3_4:43675955-43675974 None:intergenic 15.0%
!!! ATATTATTTGTTTTGAAAGA+AGG + chr3_4:43676038-43676057 Msa0501920:intron 15.0%
!!! ATAAATTCATTTTGTTATGT+AGG + chr3_4:43676275-43676294 Msa0501920:intron 15.0%
!!! AATTTTGTTGAATTTTTTAG+AGG - chr3_4:43676531-43676550 None:intergenic 15.0%
!!! AATGTATGAATAGTATTTTA+AGG - chr3_4:43677132-43677151 None:intergenic 15.0%
!!! TTTATTTTGAGGATGTTTTT+TGG - chr3_4:43672822-43672841 None:intergenic 20.0%
!!! GATTAGATATTTTGTGTTTT+AGG + chr3_4:43672865-43672884 Msa0501920:intron 20.0%
!! ATAGAAATACTTGGTTTAAA+GGG - chr3_4:43673085-43673104 None:intergenic 20.0%
!! TATAGAAATACTTGGTTTAA+AGG - chr3_4:43673086-43673105 None:intergenic 20.0%
!! CATATAATAGTAGTATAGTT+AGG - chr3_4:43673192-43673211 None:intergenic 20.0%
!!! TTTAAAACTTAATAGAGTCA+TGG - chr3_4:43674081-43674100 None:intergenic 20.0%
!! TATATAATCAGGAACTAATT+TGG + chr3_4:43674124-43674143 Msa0501920:intron 20.0%
!!! AATTTTTTTTTTTTGGTGAC+CGG + chr3_4:43674159-43674178 Msa0501920:intron 20.0%
!! TTCTTAAACTTGATAAAGAA+AGG + chr3_4:43674739-43674758 Msa0501920:CDS 20.0%
!! TCTTAAACTTGATAAAGAAA+GGG + chr3_4:43674740-43674759 Msa0501920:CDS 20.0%
!!! TAATATAATTTGTATACCTG+TGG - chr3_4:43675075-43675094 None:intergenic 20.0%
!! ATCCTCAACAAAAAAAAAAA+AGG + chr3_4:43675280-43675299 Msa0501920:intron 20.0%
!!! TACCTTTTTTTTTTTTGTTG+AGG - chr3_4:43675285-43675304 None:intergenic 20.0%
!!! AAAATGAGACATTTTAAGTT+TGG - chr3_4:43675493-43675512 None:intergenic 20.0%
!!! TTATAAACTTTACAGGTTTT+AGG - chr3_4:43675555-43675574 None:intergenic 20.0%
!! AAAAATATAGGAACACAAAA+TGG + chr3_4:43675741-43675760 Msa0501920:intron 20.0%
!! TTCAATATTCAAACAAATTC+TGG + chr3_4:43675928-43675947 Msa0501920:intron 20.0%
!! ATGTAATTGAAGTTTCTAAA+CGG - chr3_4:43676161-43676180 None:intergenic 20.0%
!!! TAAATTTTGTTGAGGAAATT+CGG - chr3_4:43676184-43676203 None:intergenic 20.0%
!!! CAAGTAAATAAATTTTGTTG+AGG - chr3_4:43676192-43676211 None:intergenic 20.0%
!!! TTTTACTCTTAAGACTTTAA+AGG + chr3_4:43677074-43677093 Msa0501920:intron 20.0%
!! TTTACTCTTAAGACTTTAAA+GGG + chr3_4:43677075-43677094 Msa0501920:intron 20.0%
!!! TTTCTTAGTTTTACTAGGTT+TGG - chr3_4:43672545-43672564 None:intergenic 25.0%
!! TAAAAGGTTTTCATGTTACT+TGG - chr3_4:43672686-43672705 None:intergenic 25.0%
!! TAAAAAAGAAAATTGGTCTC+TGG + chr3_4:43672838-43672857 Msa0501920:intron 25.0%
!!! GTTTTGGTTAATGAAATGTT+AGG + chr3_4:43672927-43672946 Msa0501920:intron 25.0%
! AAAAAGGATGAAATAGTTGA+TGG + chr3_4:43673007-43673026 Msa0501920:intron 25.0%
! AAAAGGATGAAATAGTTGAT+GGG + chr3_4:43673008-43673027 Msa0501920:intron 25.0%
! TAGAAATACTTGGTTTAAAG+GGG - chr3_4:43673084-43673103 None:intergenic 25.0%
! AGGATGTTTATAGAAATACT+TGG - chr3_4:43673094-43673113 None:intergenic 25.0%
! AATAGTGATAGAAGATGTAA+TGG + chr3_4:43673536-43673555 Msa0501920:intron 25.0%
! CAATAATAAATTGACATCAC+TGG + chr3_4:43673564-43673583 Msa0501920:intron 25.0%
! AAGAAGAATGCATAATATAC+AGG + chr3_4:43673612-43673631 Msa0501920:intron 25.0%
! AGAAGAATGCATAATATACA+GGG + chr3_4:43673613-43673632 Msa0501920:intron 25.0%
! TAGAGAAAAAAGTAGGATAT+TGG - chr3_4:43673698-43673717 None:intergenic 25.0%
! TGCAAAATAGAGAAAAAAGT+AGG - chr3_4:43673705-43673724 None:intergenic 25.0%
! AAGATTGTTCTACAAAGATA+TGG - chr3_4:43674022-43674041 None:intergenic 25.0%
! TTTAACCACTCTATATAATC+AGG + chr3_4:43674113-43674132 Msa0501920:intron 25.0%
!!! ACATATATTTTTTTTGGTGG+TGG + chr3_4:43674276-43674295 Msa0501920:intron 25.0%
!! ACATTTAAGATGAATAAGTG+AGG - chr3_4:43674541-43674560 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - chr3_4:43674574-43674593 None:intergenic 25.0%
! AAGAAATGAACAATGTTTAG+TGG - chr3_4:43674610-43674629 None:intergenic 25.0%
! CATTGTTCATTTCTTAATTC+AGG + chr3_4:43674615-43674634 Msa0501920:intron 25.0%
!! TCTAATGATGCTTTTCTTTT+TGG - chr3_4:43674642-43674661 None:intergenic 25.0%
! ATTGTTATAATTGGATAGCT+TGG - chr3_4:43674781-43674800 None:intergenic 25.0%
! CTGATGCATATTGTTATAAT+TGG - chr3_4:43674790-43674809 None:intergenic 25.0%
! CAATTATAACAATATGCATC+AGG + chr3_4:43674788-43674807 Msa0501920:CDS 25.0%
!! TAAGCAAATTTGAAATTAGC+AGG + chr3_4:43675693-43675712 Msa0501920:intron 25.0%
!!! TTCATTTTGTTATGTAGGAA+TGG + chr3_4:43676280-43676299 Msa0501920:intron 25.0%
!! TTTGTTAATGCAGAACATTT+TGG - chr3_4:43676311-43676330 None:intergenic 25.0%
!! TTAACAAAAGCATGTGAATA+TGG + chr3_4:43676323-43676342 Msa0501920:CDS 25.0%
!!! TGAATTTTTTAGAGGTTTGT+TGG - chr3_4:43676523-43676542 None:intergenic 25.0%
! GTAAAAGTAGTATAAGTTTG+TGG - chr3_4:43677060-43677079 None:intergenic 25.0%
! ACTATTCATACATTTACTCA+AGG + chr3_4:43677138-43677157 Msa0501920:intron 25.0%
TGTATCATATTTATCCAACG+AGG + chr3_4:43672460-43672479 Msa0501920:CDS 30.0%
!! TAGTTTTACTAGGTTTGGTT+CGG - chr3_4:43672540-43672559 None:intergenic 30.0%
!!! TCGCTTTTCTTAGTTTTACT+AGG - chr3_4:43672550-43672569 None:intergenic 30.0%
! TTTCATGTTACTTGGTATGT+GGG - chr3_4:43672678-43672697 None:intergenic 30.0%
!! TTTTCATGTTACTTGGTATG+TGG - chr3_4:43672679-43672698 None:intergenic 30.0%
! TACTTCTAAGTTCTGTGTTT+TGG + chr3_4:43672911-43672930 Msa0501920:intron 30.0%
TTGGTTAATGAAATGTTAGG+CGG + chr3_4:43672930-43672949 Msa0501920:intron 30.0%
CTGAAGTCTAGTAAATGTTT+GGG + chr3_4:43673031-43673050 Msa0501920:intron 30.0%
GAAGAATGCATAATATACAG+GGG + chr3_4:43673614-43673633 Msa0501920:intron 30.0%
ATTATGATCAATCTCTACGA+AGG - chr3_4:43673940-43673959 None:intergenic 30.0%
TAGTTCCTGATTATATAGAG+TGG - chr3_4:43674121-43674140 None:intergenic 30.0%
ATAATCAGGAACTAATTTGG+AGG + chr3_4:43674127-43674146 Msa0501920:intron 30.0%
CATAATATATGCAATGTTCG+AGG - chr3_4:43674193-43674212 None:intergenic 30.0%
TGCATAAAATATGCAAGTTC+CGG - chr3_4:43674316-43674335 None:intergenic 30.0%
AACCCTACATATATTATCAG+TGG - chr3_4:43674498-43674517 None:intergenic 30.0%
!! AAGAAAAGCATCATTAGATG+TGG + chr3_4:43674644-43674663 Msa0501920:CDS 30.0%
! TTTGCCATTGTTATTCAGTT+GGG - chr3_4:43674691-43674710 None:intergenic 30.0%
TTAAGAATATCATCGTGTGT+TGG - chr3_4:43674726-43674745 None:intergenic 30.0%
TAACAATATGCATCAGGAAT+TGG + chr3_4:43674794-43674813 Msa0501920:CDS 30.0%
ATATGGTTACCATAAATAGC+TGG - chr3_4:43674837-43674856 None:intergenic 30.0%
GCTATTTATGGTAACCATAT+TGG + chr3_4:43674837-43674856 Msa0501920:CDS 30.0%
!! GGAACTATTTTGTTGTAGTA+GGG + chr3_4:43674865-43674884 Msa0501920:CDS 30.0%
!!! TTGTCTCTTGTTTTTGATAC+TGG + chr3_4:43674909-43674928 Msa0501920:CDS 30.0%
CAATAAGAAGTAGACTTTGA+TGG - chr3_4:43675008-43675027 None:intergenic 30.0%
ATATTCCTTGACAAGAACTT+AGG + chr3_4:43675252-43675271 Msa0501920:intron 30.0%
ACATGTACACATGATAAAGA+GGG - chr3_4:43676000-43676019 None:intergenic 30.0%
AACATGTACACATGATAAAG+AGG - chr3_4:43676001-43676020 None:intergenic 30.0%
! TGATATTGAAAGCTTGGTTT+TGG - chr3_4:43676717-43676736 None:intergenic 30.0%
ATACATGCTATGATCTTAGA+GGG + chr3_4:43676882-43676901 Msa0501920:intron 30.0%
AAGTAGTATAAGTTTGTGGT+GGG - chr3_4:43677056-43677075 None:intergenic 30.0%
AAAGTAGTATAAGTTTGTGG+TGG - chr3_4:43677057-43677076 None:intergenic 30.0%
AAGTATCTGTGGGTATTCAT+GGG - chr3_4:43672384-43672403 None:intergenic 35.0%
ATCATATTTATCCAACGAGG+CGG + chr3_4:43672463-43672482 Msa0501920:CDS 35.0%
GGAATGATTATGAAGCTCTT+TGG - chr3_4:43672619-43672638 None:intergenic 35.0%
! AAGAAAATTGGTCTCTGGAA+AGG + chr3_4:43672843-43672862 Msa0501920:intron 35.0%
TGTGAAAATGAAATGCTGCT+GGG + chr3_4:43672979-43672998 Msa0501920:intron 35.0%
!!! ATGCTGCTGGGTTTTAAAAA+AGG + chr3_4:43672991-43673010 Msa0501920:intron 35.0%
GCTGAAGTCTAGTAAATGTT+TGG + chr3_4:43673030-43673049 Msa0501920:intron 35.0%
GCTCAAAAGAAAATATGGAG+AGG - chr3_4:43673114-43673133 None:intergenic 35.0%
TAGGGGCTCAAAAGAAAATA+TGG - chr3_4:43673119-43673138 None:intergenic 35.0%
AATAGTAGTATAGTTAGGGC+CGG - chr3_4:43673187-43673206 None:intergenic 35.0%
AACGAGTACACATTGTATGA+TGG - chr3_4:43673410-43673429 None:intergenic 35.0%
CCATATGCTTATAATAGCGA+CGG + chr3_4:43673490-43673509 Msa0501920:intron 35.0%
GCGTAATTGTTAGAAACTCA+GGG - chr3_4:43673676-43673695 None:intergenic 35.0%
GTGCAGAAGTTAATTATCCA+GGG - chr3_4:43673730-43673749 None:intergenic 35.0%
AATATCATCCTTTGAGTGCA+AGG - chr3_4:43673752-43673771 None:intergenic 35.0%
GAAGCATAAATCACTCAAGT+TGG - chr3_4:43673853-43673872 None:intergenic 35.0%
TGAGCTTAGCTTATTTGGTA+GGG - chr3_4:43674228-43674247 None:intergenic 35.0%
!!! ATATTTTTTTTGGTGGTGGC+CGG + chr3_4:43674280-43674299 Msa0501920:intron 35.0%
CATAAAATATGCAAGTTCCG+GGG - chr3_4:43674314-43674333 None:intergenic 35.0%
GCATAAAATATGCAAGTTCC+GGG - chr3_4:43674315-43674334 None:intergenic 35.0%
ACGCCACTGATAATATATGT+AGG + chr3_4:43674492-43674511 Msa0501920:intron 35.0%
CGCCACTGATAATATATGTA+GGG + chr3_4:43674493-43674512 Msa0501920:intron 35.0%
! TTGTTATTCAGTTGGGAACA+TGG - chr3_4:43674684-43674703 None:intergenic 35.0%
TGTTCCCAACTGAATAACAA+TGG + chr3_4:43674684-43674703 Msa0501920:CDS 35.0%
! CTTTGCCATTGTTATTCAGT+TGG - chr3_4:43674692-43674711 None:intergenic 35.0%
GCAAAGTTACCAGCTATTTA+TGG + chr3_4:43674825-43674844 Msa0501920:CDS 35.0%
TATGGTAACCATATTGGAAC+AGG + chr3_4:43674843-43674862 Msa0501920:CDS 35.0%
ATGGTAACCATATTGGAACA+GGG + chr3_4:43674844-43674863 Msa0501920:CDS 35.0%
AATAGTTCCCTGTTCCAATA+TGG - chr3_4:43674854-43674873 None:intergenic 35.0%
!! GGGAACTATTTTGTTGTAGT+AGG + chr3_4:43674864-43674883 Msa0501920:CDS 35.0%
!! TATTTTGTTGTAGTAGGGCT+TGG + chr3_4:43674870-43674889 Msa0501920:CDS 35.0%
! ACAAGAGACAAGTTCCTTTT+AGG - chr3_4:43674900-43674919 None:intergenic 35.0%
TACCAGATATGCAAGTGATT+TGG - chr3_4:43675115-43675134 None:intergenic 35.0%
ATATGCCTAAGTTCTTGTCA+AGG - chr3_4:43675260-43675279 None:intergenic 35.0%
CATGTACACATGATAAAGAG+GGG - chr3_4:43675999-43676018 None:intergenic 35.0%
! GTTAATGCAGAACATTTTGG+AGG - chr3_4:43676308-43676327 None:intergenic 35.0%
!! GCAATTGATGGTTTCCTTTT+CGG + chr3_4:43676419-43676438 Msa0501920:CDS 35.0%
! GGATAAGGGAGTGTATTTAA+CGG - chr3_4:43676639-43676658 None:intergenic 35.0%
TCACGTAGTAATTCCTTCTA+CGG + chr3_4:43676665-43676684 Msa0501920:CDS 35.0%
GATACATGCTATGATCTTAG+AGG + chr3_4:43676881-43676900 Msa0501920:intron 35.0%
ATTTACTCAAGGATTGCAAC+CGG + chr3_4:43677149-43677168 Msa0501920:intron 35.0%
! GAAGTATCTGTGGGTATTCA+TGG - chr3_4:43672385-43672404 None:intergenic 40.0%
TCATATTTATCCAACGAGGC+GGG + chr3_4:43672464-43672483 Msa0501920:CDS 40.0%
TATCATACTATCCGTACCCA+TGG + chr3_4:43672493-43672512 Msa0501920:intron 40.0%
GTGTGAAAATGAAATGCTGC+TGG + chr3_4:43672978-43672997 Msa0501920:intron 40.0%
! TTTTGAGCCCCTACAATCAT+GGG + chr3_4:43673126-43673145 Msa0501920:intron 40.0%
AACAGCATGATGAAGAAGCA+AGG - chr3_4:43673387-43673406 None:intergenic 40.0%
CCGTCGCTATTATAAGCATA+TGG - chr3_4:43673493-43673512 None:intergenic 40.0%
GAATGCATAATATACAGGGG+CGG + chr3_4:43673617-43673636 Msa0501920:intron 40.0%
GGCGTAATTGTTAGAAACTC+AGG - chr3_4:43673677-43673696 None:intergenic 40.0%
! TTTCTCTATTTTGCACACCC+TGG + chr3_4:43673710-43673729 Msa0501920:intron 40.0%
GGTGCAGAAGTTAATTATCC+AGG - chr3_4:43673731-43673750 None:intergenic 40.0%
TTGGAGAAATTACGTCAGCT+TGG - chr3_4:43673814-43673833 None:intergenic 40.0%
TGGTCAAACAAGATGCAAGT+TGG - chr3_4:43673833-43673852 None:intergenic 40.0%
AATGTTCGAGGTTCAAACTC+CGG - chr3_4:43674181-43674200 None:intergenic 40.0%
GTGAGCTTAGCTTATTTGGT+AGG - chr3_4:43674229-43674248 None:intergenic 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG + chr3_4:43674281-43674300 Msa0501920:intron 40.0%
ATATTATCAGTGGCGTATCC+AGG - chr3_4:43674488-43674507 None:intergenic 40.0%
TTAGATGTGGTACACAAGCA+TGG + chr3_4:43674657-43674676 Msa0501920:CDS 40.0%
TAGATGTGGTACACAAGCAT+GGG + chr3_4:43674658-43674677 Msa0501920:CDS 40.0%
! ATACTGGTAGTGATCTCACT+TGG + chr3_4:43674925-43674944 Msa0501920:CDS 40.0%
! TCATCTTGCTGTGTGTAACA+AGG - chr3_4:43674975-43674994 None:intergenic 40.0%
ACTCAACTATCTTCATCCAC+AGG + chr3_4:43675056-43675075 Msa0501920:CDS 40.0%
CACCAAATCACTTGCATATC+TGG + chr3_4:43675110-43675129 Msa0501920:intron 40.0%
AATCCTTTAACCCAACCAAG+TGG + chr3_4:43675965-43675984 Msa0501920:intron 40.0%
! AGTAACCTTTGGAGAAGGAT+TGG - chr3_4:43676364-43676383 None:intergenic 40.0%
! ATGGTTTCCTTTTCGGTTGT+GGG + chr3_4:43676426-43676445 Msa0501920:CDS 40.0%
CAATACAACCAAGGTCTGTT+CGG + chr3_4:43676449-43676468 Msa0501920:CDS 40.0%
! GTTTGTTGGACGAAAGAGAT+TGG - chr3_4:43676509-43676528 None:intergenic 40.0%
TGGAGCTACCGATAATAACA+AGG + chr3_4:43676601-43676620 Msa0501920:CDS 40.0%
AGCTACCGATAATAACAAGG+TGG + chr3_4:43676604-43676623 Msa0501920:CDS 40.0%
!! GTTGGCCACCTTGTTATTAT+CGG - chr3_4:43676612-43676631 None:intergenic 40.0%
AGTGTATTTAACGGCGTTGT+TGG - chr3_4:43676630-43676649 None:intergenic 40.0%
CTACGTGAGATTGTGGATAA+GGG - chr3_4:43676653-43676672 None:intergenic 40.0%
ACTACGTGAGATTGTGGATA+AGG - chr3_4:43676654-43676673 None:intergenic 40.0%
GGAATTACTACGTGAGATTG+TGG - chr3_4:43676660-43676679 None:intergenic 40.0%
GGAGGATGATATTGAAAGCT+TGG - chr3_4:43676723-43676742 None:intergenic 40.0%
! TCATCCTCCATTTTCTCCTT+CGG + chr3_4:43676734-43676753 Msa0501920:CDS 40.0%
ACTCTGGTACTGTCATTACA+CGG + chr3_4:43676771-43676790 Msa0501920:CDS 40.0%
TCATGCATTCCGGAAAGAAA+TGG + chr3_4:43676823-43676842 Msa0501920:CDS 40.0%
GATACTTCGCCATTTCTTTC+CGG - chr3_4:43676835-43676854 None:intergenic 40.0%
ATGCTATGATCTTAGAGGGA+GGG + chr3_4:43676886-43676905 Msa0501920:intron 40.0%
TTTACTCAAGGATTGCAACC+GGG + chr3_4:43677150-43677169 Msa0501920:intron 40.0%
!! GCGGGTATTGAAGTATCTGT+GGG - chr3_4:43672394-43672413 None:intergenic 45.0%
CACAGATACTTCAATACCCG+CGG + chr3_4:43672393-43672412 Msa0501920:CDS 45.0%
ACAGATACTTCAATACCCGC+GGG + chr3_4:43672394-43672413 Msa0501920:CDS 45.0%
! CTTTTGAGCCCCTACAATCA+TGG + chr3_4:43673125-43673144 Msa0501920:intron 45.0%
CCTCGTGAGCTTAGCTTATT+TGG - chr3_4:43674233-43674252 None:intergenic 45.0%
CCAAATAAGCTAAGCTCACG+AGG + chr3_4:43674230-43674249 Msa0501920:intron 45.0%
!!! ATTTTTTTTGGTGGTGGCCG+GGG + chr3_4:43674282-43674301 Msa0501920:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr3_4:43674343-43674362 None:intergenic 45.0%
! TAGGGCTTGGTACTCCTAAA+AGG + chr3_4:43674883-43674902 Msa0501920:CDS 45.0%
AGTCCACTTGGTTGGGTTAA+AGG - chr3_4:43675971-43675990 None:intergenic 45.0%
GTACACATGATAAAGAGGGG+TGG - chr3_4:43675996-43676015 None:intergenic 45.0%
AGTGACCAATCCTTCTCCAA+AGG + chr3_4:43676356-43676375 Msa0501920:CDS 45.0%
! GCTGAAGTAACCTTTGGAGA+AGG - chr3_4:43676369-43676388 None:intergenic 45.0%
TTCACGGCTGAAGTAACCTT+TGG - chr3_4:43676375-43676394 None:intergenic 45.0%
! GCGTTATGGTTAGTCGTTCA+CGG - chr3_4:43676391-43676410 None:intergenic 45.0%
ACGACTAACCATAACGCCAA+CGG + chr3_4:43676394-43676413 Msa0501920:CDS 45.0%
AAACCATCAATTGCGTCCGT+TGG - chr3_4:43676413-43676432 None:intergenic 45.0%
! GATGGTTTCCTTTTCGGTTG+TGG + chr3_4:43676425-43676444 Msa0501920:CDS 45.0%
TGTATTGCCCACAACCGAAA+AGG - chr3_4:43676436-43676455 None:intergenic 45.0%
AAGAGATTGGATGACGACCA+AGG - chr3_4:43676496-43676515 None:intergenic 45.0%
GTTATTGGCCACCTCACATT+TGG + chr3_4:43676581-43676600 Msa0501920:CDS 45.0%
TATCGGTAGCTCCAAATGTG+AGG - chr3_4:43676595-43676614 None:intergenic 45.0%
AACGATGTCAAGACCGTAGA+AGG - chr3_4:43676681-43676700 None:intergenic 45.0%
TTCTACGGTCTTGACATCGT+TGG + chr3_4:43676680-43676699 Msa0501920:CDS 45.0%
GACAGTACCAGAGTCAATGA+TGG - chr3_4:43676765-43676784 None:intergenic 45.0%
CATGCTATGATCTTAGAGGG+AGG + chr3_4:43676885-43676904 Msa0501920:intron 45.0%
!! TCTCCAATGAGAAAAGCACC+CGG - chr3_4:43677171-43677190 None:intergenic 45.0%
!!! TACATTAAATTTTTTTTTTT+TGG + chr3_4:43674152-43674171 Msa0501920:intron 5.0%
!!! TAATATACATATATTTTTTT+TGG + chr3_4:43674270-43674289 Msa0501920:intron 5.0%
!!! CTTTTATTTTTTTATTTTTT+TGG + chr3_4:43675350-43675369 Msa0501920:intron 5.0%
!!! TTTTATTAATAATAAAAACA+AGG - chr3_4:43675419-43675438 None:intergenic 5.0%
!!! TGTTTTTATTATTAATAAAA+TGG + chr3_4:43675419-43675438 Msa0501920:intron 5.0%
!! TTAAAATTAAATAAAATCAA+GGG + chr3_4:43675593-43675612 Msa0501920:intron 5.0%
!! CGCGGGTATTGAAGTATCTG+TGG - chr3_4:43672395-43672414 None:intergenic 50.0%
TTTATCCAACGAGGCGGGAA+CGG + chr3_4:43672469-43672488 Msa0501920:CDS 50.0%
TCAACGGGTATCCATGGGTA+CGG - chr3_4:43672507-43672526 None:intergenic 50.0%
GGATGTCAACGGGTATCCAT+GGG - chr3_4:43672512-43672531 None:intergenic 50.0%
!! ACTAGGTTTGGTTCGGCCTA+GGG - chr3_4:43672533-43672552 None:intergenic 50.0%
!! TACTAGGTTTGGTTCGGCCT+AGG - chr3_4:43672534-43672553 None:intergenic 50.0%
CCTAGTGCCCATGATTGTAG+GGG - chr3_4:43673136-43673155 None:intergenic 50.0%
GCCTAGTGCCCATGATTGTA+GGG - chr3_4:43673137-43673156 None:intergenic 50.0%
TAATATACAGGGGCGGACCT+AGG + chr3_4:43673624-43673643 Msa0501920:intron 50.0%
CTTCTGCACCTTGCACTCAA+AGG + chr3_4:43673741-43673760 Msa0501920:intron 50.0%
GTGTAACAAGGACGAGCACA+AGG - chr3_4:43674963-43674982 None:intergenic 50.0%
GGTGGATAGTCCACTTGGTT+GGG - chr3_4:43675978-43675997 None:intergenic 50.0%
AATTGCGTCCGTTGGCGTTA+TGG - chr3_4:43676405-43676424 None:intergenic 50.0%
GGTTGTGGGCAATACAACCA+AGG + chr3_4:43676440-43676459 Msa0501920:CDS 50.0%
ACGACCAAGGCCTAATATGC+CGG - chr3_4:43676483-43676502 None:intergenic 50.0%
CCAATAACGCTGGAAGTGGA+AGG - chr3_4:43676569-43676588 None:intergenic 50.0%
CCTTCCACTTCCAGCGTTAT+TGG + chr3_4:43676566-43676585 Msa0501920:CDS 50.0%
! TCCTCCATTTTCTCCTTCGG+TGG + chr3_4:43676737-43676756 Msa0501920:CDS 50.0%
TGCATGACGAAGGCTAGCAT+AGG - chr3_4:43676810-43676829 None:intergenic 50.0%
! CTAGCCTTCGTCATGCATTC+CGG + chr3_4:43676813-43676832 Msa0501920:CDS 50.0%
CTTTCCGGAATGCATGACGA+AGG - chr3_4:43676820-43676839 None:intergenic 50.0%
! ATTTGAAACCCCGAAGCAGC+TGG - chr3_4:43676857-43676876 None:intergenic 50.0%
! CAACCGGGTGCTTTTCTCAT+TGG + chr3_4:43677165-43677184 Msa0501920:CDS 50.0%
TTATCCAACGAGGCGGGAAC+GGG + chr3_4:43672470-43672489 Msa0501920:CDS 55.0%
GGGATGTCAACGGGTATCCA+TGG - chr3_4:43672513-43672532 None:intergenic 55.0%
GGATACCCGTTGACATCCCT+AGG + chr3_4:43672514-43672533 Msa0501920:intron 55.0%
TTCGGCCTAGGGATGTCAAC+GGG - chr3_4:43672522-43672541 None:intergenic 55.0%
GTTCGGCCTAGGGATGTCAA+CGG - chr3_4:43672523-43672542 None:intergenic 55.0%
!! GCGGCGAAAATGAAAGCGCT+GGG + chr3_4:43672949-43672968 Msa0501920:intron 55.0%
CCCCTACAATCATGGGCACT+AGG + chr3_4:43673133-43673152 Msa0501920:intron 55.0%
GGCCTAGTGCCCATGATTGT+AGG - chr3_4:43673138-43673157 None:intergenic 55.0%
CTAGGCATAGGTCGGAGTTG+GGG - chr3_4:43673162-43673181 None:intergenic 55.0%
CCTAGGCATAGGTCGGAGTT+GGG - chr3_4:43673163-43673182 None:intergenic 55.0%
CCAACTCCGACCTATGCCTA+GGG + chr3_4:43673161-43673180 Msa0501920:intron 55.0%
GCACACTCTCACCAACACCT+AGG - chr3_4:43673644-43673663 None:intergenic 55.0%
AAGTTCCGGGGTTCAAACCC+CGG - chr3_4:43674302-43674321 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr3_4:43674348-43674367 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr3_4:43674345-43674364 Msa0501920:intron 55.0%
TATCCAGGACCCTAGGTCAG+GGG - chr3_4:43674473-43674492 None:intergenic 55.0%
GTATCCAGGACCCTAGGTCA+GGG - chr3_4:43674474-43674493 None:intergenic 55.0%
GGGTGGATAGTCCACTTGGT+TGG - chr3_4:43675979-43675998 None:intergenic 55.0%
AGAGGGGTGGATAGTCCACT+TGG - chr3_4:43675983-43676002 None:intergenic 55.0%
ACGCCAACGGACGCAATTGA+TGG + chr3_4:43676407-43676426 Msa0501920:CDS 55.0%
CAGACATGCCGAACAGACCT+TGG - chr3_4:43676460-43676479 None:intergenic 55.0%
GGCATGTCTGCCGGCATATT+AGG + chr3_4:43676470-43676489 Msa0501920:CDS 55.0%
TCTGCCGGCATATTAGGCCT+TGG + chr3_4:43676476-43676495 Msa0501920:CDS 55.0%
GTGGCCAATAACGCTGGAAG+TGG - chr3_4:43676573-43676592 None:intergenic 55.0%
TGTGAGGTGGCCAATAACGC+TGG - chr3_4:43676579-43676598 None:intergenic 55.0%
CGGTAGCTCCAAATGTGAGG+TGG - chr3_4:43676592-43676611 None:intergenic 55.0%
GCCACCGAAGGAGAAAATGG+AGG - chr3_4:43676741-43676760 None:intergenic 55.0%
CGAAGGCTAGCATAGGCAGA+CGG - chr3_4:43676803-43676822 None:intergenic 55.0%
! GGCGAAGTATCCAGCTGCTT+CGG + chr3_4:43676844-43676863 Msa0501920:CDS 55.0%
! GCGAAGTATCCAGCTGCTTC+GGG + chr3_4:43676845-43676864 Msa0501920:CDS 55.0%
! CGAAGTATCCAGCTGCTTCG+GGG + chr3_4:43676846-43676865 Msa0501920:CDS 55.0%
CCATTGTACGGGTAACCCGC+GGG - chr3_4:43672412-43672431 None:intergenic 60.0%
CCCATTGTACGGGTAACCCG+CGG - chr3_4:43672413-43672432 None:intergenic 60.0%
! CCGCGGGTTACCCGTACAAT+GGG + chr3_4:43672410-43672429 Msa0501920:CDS 60.0%
CGCGTGGGTACCCATTGTAC+GGG - chr3_4:43672423-43672442 None:intergenic 60.0%
CCGCGTGGGTACCCATTGTA+CGG - chr3_4:43672424-43672443 None:intergenic 60.0%
CCGTACAATGGGTACCCACG+CGG + chr3_4:43672421-43672440 Msa0501920:CDS 60.0%
CGTACAATGGGTACCCACGC+GGG + chr3_4:43672422-43672441 Msa0501920:CDS 60.0%
AATGGGTACCCACGCGGGTA+TGG + chr3_4:43672427-43672446 Msa0501920:CDS 60.0%
ATGGGTACCCACGCGGGTAT+GGG + chr3_4:43672428-43672447 Msa0501920:CDS 60.0%
! GGCGGCGAAAATGAAAGCGC+TGG + chr3_4:43672948-43672967 Msa0501920:intron 60.0%
CCCAACTCCGACCTATGCCT+AGG + chr3_4:43673160-43673179 Msa0501920:intron 60.0%
CCCTAGGCATAGGTCGGAGT+TGG - chr3_4:43673164-43673183 None:intergenic 60.0%
GTATAGTTAGGGCCGGCCCT+AGG - chr3_4:43673180-43673199 None:intergenic 60.0%
AAGTTCGCACCCCCTGACCT+AGG + chr3_4:43674460-43674479 Msa0501920:intron 60.0%
AGTTCGCACCCCCTGACCTA+GGG + chr3_4:43674461-43674480 Msa0501920:intron 60.0%
ATCCAGGACCCTAGGTCAGG+GGG - chr3_4:43674472-43674491 None:intergenic 60.0%
CGTATCCAGGACCCTAGGTC+AGG - chr3_4:43674475-43674494 None:intergenic 60.0%
AGTGGCGTATCCAGGACCCT+AGG - chr3_4:43674480-43674499 None:intergenic 60.0%
GGTCTGTTCGGCATGTCTGC+CGG + chr3_4:43676461-43676480 Msa0501920:CDS 60.0%
GGCGCCACCGAAGGAGAAAA+TGG - chr3_4:43676744-43676763 None:intergenic 60.0%
! GTCAATGATGGCGCCACCGA+AGG - chr3_4:43676753-43676772 None:intergenic 60.0%
!! GGTGGCGCCATCATTGACTC+TGG + chr3_4:43676755-43676774 Msa0501920:CDS 60.0%
AGGCTAGCATAGGCAGACGG+CGG - chr3_4:43676800-43676819 None:intergenic 60.0%
! CCCGCGGGTTACCCGTACAA+TGG + chr3_4:43672409-43672428 Msa0501920:CDS 65.0%
TGGGTACCCACGCGGGTATG+GGG + chr3_4:43672429-43672448 Msa0501920:CDS 65.0%
TGTCTGCCCCATACCCGCGT+GGG - chr3_4:43672438-43672457 None:intergenic 65.0%
GATACCCGTTCCCGCCTCGT+TGG - chr3_4:43672477-43672496 None:intergenic 65.0%
GGCATAGGTCGGAGTTGGGG+CGG - chr3_4:43673159-43673178 None:intergenic 65.0%
CTCCGACCTATGCCTAGGGC+CGG + chr3_4:43673165-43673184 Msa0501920:intron 65.0%
TTAGGGCCGGCCCTAGGCAT+AGG - chr3_4:43673174-43673193 None:intergenic 65.0%
ACAGGGGCGGACCTAGGTGT+TGG + chr3_4:43673630-43673649 Msa0501920:intron 65.0%
GTGTCTGCCCCATACCCGCG+TGG - chr3_4:43672439-43672458 None:intergenic 70.0%
GGCCGGCCCTAGGCATAGGT+CGG - chr3_4:43673170-43673189 None:intergenic 70.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr3_4:43674294-43674313 Msa0501920:intron 70.0%
CACCCCCTGACCTAGGGTCC+TGG + chr3_4:43674467-43674486 Msa0501920:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 43672374 43677202 43672374 ID=Msa0501920;Name=Msa0501920
chr3_4 mRNA 43672374 43677202 43672374 ID=Msa0501920-mRNA-1;Parent=Msa0501920;Name=Msa0501920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.33|0.25|0.5|1|1|4|0|390
chr3_4 exon 43672374 43672491 43672374 ID=Msa0501920-mRNA-1:exon:9265;Parent=Msa0501920-mRNA-1
chr3_4 exon 43674637 43675077 43674637 ID=Msa0501920-mRNA-1:exon:9266;Parent=Msa0501920-mRNA-1
chr3_4 exon 43676297 43676867 43676297 ID=Msa0501920-mRNA-1:exon:9267;Parent=Msa0501920-mRNA-1
chr3_4 exon 43677160 43677202 43677160 ID=Msa0501920-mRNA-1:exon:9268;Parent=Msa0501920-mRNA-1
chr3_4 CDS 43672374 43672491 43672374 ID=Msa0501920-mRNA-1:cds;Parent=Msa0501920-mRNA-1
chr3_4 CDS 43674637 43675077 43674637 ID=Msa0501920-mRNA-1:cds;Parent=Msa0501920-mRNA-1
chr3_4 CDS 43676297 43676867 43676297 ID=Msa0501920-mRNA-1:cds;Parent=Msa0501920-mRNA-1
chr3_4 CDS 43677160 43677202 43677160 ID=Msa0501920-mRNA-1:cds;Parent=Msa0501920-mRNA-1
Gene Sequence

>Msa0501920

ATGGGTACCCATGAATACCCACAGATACTTCAATACCCGCGGGTTACCCGTACAATGGGTACCCACGCGGGTATGGGGCAGACACATGTATCATATTTATCCAACGAGGCGGGAACGGGTCCAAAAAGAAAAGCATCATTAGATGTGGTACACAAGCATGGGCCATGTTCCCAACTGAATAACAATGGCAAAGCAAATATTCTTCCAACACACGATGATATTCTTAAACTTGATAAAGAAAGGGTGAACTATATTCACTCCAAGCTATCCAATTATAACAATATGCATCAGGAATTGGATTCTTTAGCAAAGTTACCAGCTATTTATGGTAACCATATTGGAACAGGGAACTATTTTGTTGTAGTAGGGCTTGGTACTCCTAAAAGGAACTTGTCTCTTGTTTTTGATACTGGTAGTGATCTCACTTGGACTCAGTGTCAACCTTGTGCTCGTCCTTGTTACACACAGCAAGATGAAATTTTTGATCCATCAAAGTCTACTTCTTATTGCAATATTTCATGTACTTCTTCAGATTGCACTCAACTATCTTCATCCACAGGAATGGATCCTCCAAAATGTTCTGCATTAACAAAAGCATGTGAATATGGCATGTTTTATAGTGACCAATCCTTCTCCAAAGGTTACTTCAGCCGTGAACGACTAACCATAACGCCAACGGACGCAATTGATGGTTTCCTTTTCGGTTGTGGGCAATACAACCAAGGTCTGTTCGGCATGTCTGCCGGCATATTAGGCCTTGGTCGTCATCCAATCTCTTTCGTCCAACAAACCTCTAAAAAATTCAACAAAATTTTCTCTTATTGTCTTCCTTCCACTTCCAGCGTTATTGGCCACCTCACATTTGGAGCTACCGATAATAACAAGGTGGCCAACAACGCCGTTAAATACACTCCCTTATCCACAATCTCACGTAGTAATTCCTTCTACGGTCTTGACATCGTTGGCATCAGTGTTGCCAAAACCAAGCTTTCAATATCATCCTCCATTTTCTCCTTCGGTGGCGCCATCATTGACTCTGGTACTGTCATTACACGGCTGCCGCCGTCTGCCTATGCTAGCCTTCGTCATGCATTCCGGAAAGAAATGGCGAAGTATCCAGCTGCTTCGGGGATTGCAACCGGGTGCTTTTCTCATTGGAGAATTTCACAATAA
Protein sequence

>Msa0501920

MGTHEYPQILQYPRVTRTMGTHAGMGQTHVSYLSNEAGTGPKRKASLDVVHKHGPCSQLNNNGKANILPTHDDILKLDKERVNYIHSKLSNYNNMHQELDSLAKLPAIYGNHIGTGNYFVVVGLGTPKRNLSLVFDTGSDLTWTQCQPCARPCYTQQDEIFDPSKSTSYCNISCTSSDCTQLSSSTGMDPPKCSALTKACEYGMFYSDQSFSKGYFSRERLTITPTDAIDGFLFGCGQYNQGLFGMSAGILGLGRHPISFVQQTSKKFNKIFSYCLPSTSSVIGHLTFGATDNNKVANNAVKYTPLSTISRSNSFYGLDIVGISVAKTKLSISSSIFSFGGAIIDSGTVITRLPPSAYASLRHAFRKEMAKYPAASGIATGCFSHWRISQ*