AlfalfaGEDB | Msa0379590

M. sativa cultivar zhongmu-4 / Msa0379590

KEGG: -
GO: GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006857 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0010035 GO:0010038 GO:0015711 GO:0015833 GO:0034635 GO:0042221 GO:0042886 GO:0042939 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0098542
PFAM: PF08627.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379590	XP_003602864.2	96.471	425	3	4	1	416	1	422	0.0	791

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379590	sp\|A1L4X0\|CLT2_ARATH	59.360	406	145	5	13	414	40	429	6.42e-149	432

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379590	G7J4H9	96.471	425	3	4	1	416	1	422	0.0	791

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0379590	0.804775	1.836958e-49	-8.615850e-47
Msa0001510	Msa0379590	0.859754	3.322140e-63	-8.615850e-47
Msa0001540	Msa0379590	0.802225	6.206419e-49	-8.615850e-47
Msa0002690	Msa0379590	0.844070	9.489527e-59	-8.615850e-47
Msa0002700	Msa0379590	0.836647	8.277475e-57	-8.615850e-47
Msa0003340	Msa0379590	0.858668	7.036375e-63	-8.615850e-47
Msa0004180	Msa0379590	0.858997	5.608658e-63	-8.615850e-47
Msa0005500	Msa0379590	0.808700	2.722981e-50	-8.615850e-47
Msa0007160	Msa0379590	0.803893	2.804306e-49	-8.615850e-47
Msa0007570	Msa0379590	0.829156	6.026557e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379590	MtrunA17_Chr3g0132621	96.471	425	3	4	1	416	1	422	0.0	791
Msa0379590	MtrunA17_Chr0c02g0489751	59.810	316	123	2	96	408	106	420	1.83e-120	357
Msa0379590	MtrunA17_Chr5g0441721	56.615	325	136	3	92	413	106	428	2.50e-115	344

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379590	AT4G24460.2	59.360	406	145	5	13	414	40	429	6.53e-150	432
Msa0379590	AT4G24460.1	59.360	406	145	5	13	414	40	429	6.53e-150	432
Msa0379590	AT4G24460.4	68.013	297	90	3	122	414	6	301	2.05e-126	367
Msa0379590	AT5G12170.2	50.278	360	173	3	62	416	85	443	1.65e-112	337
Msa0379590	AT5G19380.1	55.215	326	141	3	92	414	115	438	1.08e-108	327
Msa0379590	AT4G24460.3	57.196	271	101	2	13	283	40	295	5.07e-94	285
Msa0379590	AT5G19380.2	53.041	296	134	3	122	414	205	498	4.83e-89	279
Msa0379590	AT5G12170.3	50.000	224	110	1	62	283	85	308	1.46e-68	220

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Find 103 sgRNAs with CRISPR-Local

Find 815 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATACCTTTAATCGAG+TGG	0.578667	3_1:-80774904	None:intergenic
AAAGTCGTTGGATATATTTG+TGG	0.558378	3_1:+80775048	Msa0379590:CDS
AACCTTGATTATTGAAGCCC+CGG	0.504691	3_1:-80774780	None:intergenic
AACTGTTCGATGTTTGAGAT+TGG	0.429811	3_1:-80766275	None:intergenic
AAGACATTGAATTTGAATTT+AGG	0.216001	3_1:-80766204	None:intergenic
AAGAGGAAGAAGATGAAGAT+TGG	0.420245	3_1:-80766306	None:intergenic
AATAAATAGCTGCTGTGTTT+CGG	0.374482	3_1:-80777766	None:intergenic
AATGATCTGATGGCAAAATG+AGG	0.581582	3_1:-80777651	None:intergenic
AATTGCAGTGGCTCTAATGC+AGG	0.547753	3_1:+80774692	Msa0379590:intron
ACAACACAACCCGACCTGCT+AGG	0.576941	3_1:+80777523	Msa0379590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGCAACAGCTAAAGAAA+CGG	-	chr3_1:80766386-80766405	None:intergenic	30.0%
GATAATTACTCATAGGAACA+AGG	-	chr3_1:80766429-80766448	None:intergenic	30.0%
CATTTGTAACAATTCCTAAC+CGG	-	chr3_1:80766627-80766646	None:intergenic	30.0%
ATAACAAAAAACCGCCATTT+GGG	-	chr3_1:80766664-80766683	None:intergenic	30.0%
ATAAGTGGTGTAAGATTGTA+CGG	+	chr3_1:80766890-80766909	Msa0379590:intron	30.0%
ATGATATGTCTGTAAGTTGT+TGG	+	chr3_1:80766934-80766953	Msa0379590:intron	30.0%
ATGAAATCACCATAAGTTGT+TGG	+	chr3_1:80766983-80767002	Msa0379590:intron	30.0%
TAAGATACCTGATTCAGTAT+GGG	-	chr3_1:80767267-80767286	None:intergenic	30.0%
TTAAGATACCTGATTCAGTA+TGG	-	chr3_1:80767268-80767287	None:intergenic	30.0%
TAAGTTCTCAAACAAAAGGT+AGG	-	chr3_1:80767453-80767472	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	80766069	80777895	80766069	ID=Msa0379590;Name=Msa0379590
chr3_1	mRNA	80766069	80777895	80766069	ID=Msa0379590-mRNA-1;Parent=Msa0379590;Name=Msa0379590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=49\|1\|1\|1\|1\|1\|10\|329\|416
chr3_1	exon	80766069	80766479	80766069	ID=Msa0379590-mRNA-1:exon:20193;Parent=Msa0379590-mRNA-1
chr3_1	exon	80766585	80766730	80766585	ID=Msa0379590-mRNA-1:exon:20194;Parent=Msa0379590-mRNA-1
chr3_1	exon	80767241	80767278	80767241	ID=Msa0379590-mRNA-1:exon:20195;Parent=Msa0379590-mRNA-1
chr3_1	exon	80773584	80773699	80773584	ID=Msa0379590-mRNA-1:exon:20196;Parent=Msa0379590-mRNA-1
chr3_1	exon	80774700	80774799	80774700	ID=Msa0379590-mRNA-1:exon:20197;Parent=Msa0379590-mRNA-1
chr3_1	exon	80774882	80774917	80774882	ID=Msa0379590-mRNA-1:exon:20198;Parent=Msa0379590-mRNA-1
chr3_1	exon	80775046	80775096	80775046	ID=Msa0379590-mRNA-1:exon:20199;Parent=Msa0379590-mRNA-1
chr3_1	exon	80776275	80776389	80776275	ID=Msa0379590-mRNA-1:exon:20200;Parent=Msa0379590-mRNA-1
chr3_1	exon	80777144	80777269	80777144	ID=Msa0379590-mRNA-1:exon:20201;Parent=Msa0379590-mRNA-1
chr3_1	exon	80777406	80777895	80777406	ID=Msa0379590-mRNA-1:exon:20202;Parent=Msa0379590-mRNA-1
chr3_1	five_prime_UTR	80766069	80766117	80766069	ID=Msa0379590-mRNA-1:five_prime_utr;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80766118	80766479	80766118	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80766585	80766730	80766585	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80767241	80767278	80767241	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80773584	80773699	80773584	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80774700	80774799	80774700	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80774882	80774917	80774882	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80775046	80775096	80775046	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80776275	80776389	80776275	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80777144	80777269	80777144	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	CDS	80777406	80777566	80777406	ID=Msa0379590-mRNA-1:cds;Parent=Msa0379590-mRNA-1
chr3_1	three_prime_UTR	80777567	80777895	80777567	ID=Msa0379590-mRNA-1:three_prime_utr;Parent=Msa0379590-mRNA-1

Gene Sequence

>Msa0379590

ATGGCAGTTTATTCAACCTTCTTATTCAATTCTTCTTCATTCTCTTCTCATTCTCATTTCAATTTTCACAATCTCAAACTCAAAAACCTAAATTCAAATTCAATGTCTTCTTCTTCTTCTTCACTTCCAATAAAATCACCCTTCCATTTACCTTCTTCCAATCTCAAACATCGAACAGTTTTCAAATTCCAATCTTCATCTTCTTCCTCTTCTTCCGATTGGTCCACTGCAACTAAAAAAACTGTTTTATTAACCTCCGCAACTACCGTTTCTTTAGCTGTTGCTAATCGCGTTCTTTATAAATTAGCCCTTGTTCCTATGAGTAATTATCCTTTTTTCCTCGCTCAGTTAAATACTTTTGGGTATGTTGTTATATACTTTAGCATTTTGTATATACGATACCGGTTAGGAATTGTTACAAATGAGATGCTTGCAATTCCCAAATGGCGGTTTTTTGTTATCGGGTTTTTGGAAGCTTTGGGATTGGTTTCTGGAATGTCTGCTGGAGCAATACTTCCTGGACCAGTCATACCCATACTGAATCAGACTTTTTTAGTTTGGCAGTTGATGTTTTCCGCTCTTATCCTGAGGAGAAGGTACTCAATTAACCAAATTGTTGGGTGTTTACTAGTAGCTGCTGGTGTTGTGATTGCTATCTCAAGTGGCTCTAATGCAGGTCAAATGCTCTCTAAAGTTGATTTCGTGTGGCCAGCATTGATGATAGTTTCTTGTGCCTTTCAAGCCGGGGCTTCAATAATCAAGGAATTTGTTTTTCTTGATTCTTCCACTCGATTAAAGCAAAAGTCGTTGGATATATTTGTGGTCAATTCTTTTGGATCCGGATTTCAGGCTCTTTTCGTGCTTCTCTTTCTACCTTTAATCTCGAACTTGAAAGGAATACCATTTGTTCAACTACCTTCATATCTTAAAAGTGGTGCTGGTTGCTTTCTAAACATTGGAGCTGGTTGTGATGGTGCTCCCTTGCTTCCGCTGCTCTACGTAGTTACCAATTTGGCATTCAACATATCCCTGCTTAACGTACTAAAAAGTTCTTCTGCAGTTGTTGCTTCTCTCATGTTAATGTTGTCAGTGCCAATTTCTGTTTATGTTCTTTCCCTTCCATTACCATATCTTCCAGAGGGAGGAACAACATTGAGCCCATTCTTTCTGCTTGGTTGTGCAATTCTTGTATGTGGGCTTTATACATACAACACAACCCGACCTGCTAGGAATAGTTCAGAAGTTGACTGA

Protein sequence

>Msa0379590

MAVYSTFLFNSSSFSSHSHFNFHNLKLKNLNSNSMSSSSSSLPIKSPFHLPSSNLKHRTVFKFQSSSSSSSSDWSTATKKTVLLTSATTVSLAVANRVLYKLALVPMSNYPFFLAQLNTFGYVVIYFSILYIRYRLGIVTNEMLAIPKWRFFVIGFLEALGLVSGMSAGAILPGPVIPILNQTFLVWQLMFSALILRRRYSINQIVGCLLVAAGVVIAISSGSNAGQMLSKVDFVWPALMIVSCAFQAGASIIKEFVFLDSSTRLKQKSLDIFVVNSFGSGFQALFVLLFLPLISNLKGIPFVQLPSYLKSGAGCFLNIGAGCDGAPLLPLLYVVTNLAFNISLLNVLKSSSAVVASLMLMLSVPISVYVLSLPLPYLPEGGTTLSPFFLLGCAILVCGLYTYNTTRPARNSSEVD*