AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802270 MtrunA17_Chr5g0409601 94.937 79 4 0 5 83 242 320 1.50e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802270 AT5G48790.1 73.684 76 19 1 5 80 239 313 4.49e-37 126

Find 94 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGTCAAAGATGAGATTT+TGG 0.158126 5_3:-16465733 Msa0802270:five_prime_UTR
TGTTCTTCTGTTTCAGCTTC+TGG 0.198016 5_3:-16468469 Msa0802270:five_prime_UTR
TAGCTGTTTGTTATCTTTCA+TGG 0.235080 5_3:+16467157 None:intergenic
AGGAAAGAGGGTGTTATTAT+TGG 0.257870 5_3:+16468693 None:intergenic
CATTCTTCTCAGGACCTTCC+AGG 0.258428 5_3:+16465292 None:intergenic
CTACCGTTGACATTGAAATA+TGG 0.280220 5_3:+16466018 None:intergenic
GCTAAGTCTAGCACATTTAA+TGG 0.303605 5_3:+16468784 None:intergenic
AATGGTGGGTTTATCAGAAT+TGG 0.317994 5_3:-16468541 Msa0802270:five_prime_UTR
TTCTTGCATAAGTATTTGTT+TGG 0.332839 5_3:-16465772 Msa0802270:five_prime_UTR
AAGTCTACTTCATTAGCTTC+TGG 0.341722 5_3:+16466186 None:intergenic
TTCGTAAGTCCAGCAAGCTT+TGG 0.347190 5_3:+16465624 None:intergenic
AAAGAAGTGATTTGATCAAT+AGG 0.349938 5_3:+16464514 None:intergenic
GGGTTGGTCTCCGGCTTCTT+CGG 0.358218 5_3:-16464749 Msa0802270:three_prime_UTR
GGCTAGAGTTGCAGTGGAAT+TGG 0.367089 5_3:-16467180 Msa0802270:five_prime_UTR
GAAATCGACCGTATCAGATC+TGG 0.388599 5_3:-16465840 Msa0802270:five_prime_UTR
TCTGTTTCAGCTTCTGGTGA+TGG 0.398594 5_3:-16468463 Msa0802270:five_prime_UTR
CTCAGGACCTTCCAGGGTCC+TGG 0.401002 5_3:+16465299 None:intergenic
AGAAAATAGTAATCCTTGAA+TGG 0.408376 5_3:-16465673 Msa0802270:exon
TACTACTCCCCATTCTTCTC+AGG 0.409708 5_3:+16465282 None:intergenic
TCGTAAGTCCAGCAAGCTTT+GGG 0.409771 5_3:+16465625 None:intergenic
AACGAACAGGGGTTGGTCTC+CGG 0.410001 5_3:-16464758 Msa0802270:intron
TGAGAGGTGCATGTTGTAAA+TGG 0.413832 5_3:-16468753 Msa0802270:five_prime_UTR
TGGAAGGTCCTGAGAAGAAT+GGG 0.428971 5_3:-16465290 Msa0802270:CDS
GTTGTTAATACCGTTGAAGA+TGG 0.430296 5_3:+16468669 None:intergenic
GAAAGATAACAAACAGCTAA+TGG 0.432708 5_3:-16467153 Msa0802270:intron
TCACCCTACCTATAGGCTAT+AGG 0.444996 5_3:+16464369 None:intergenic
GATTCTCTAGGTTCTCAAGT+TGG 0.454797 5_3:-16468581 Msa0802270:intron
CTACTTGTAGGTACCATTGA+AGG 0.455960 5_3:+16468505 None:intergenic
GAAGTCCTTTCTACCTTCCA+TGG 0.456657 5_3:-16465604 Msa0802270:CDS
ATGTTTGTTGCTGTACAGTT+TGG 0.456722 5_3:-16464625 Msa0802270:three_prime_UTR
ACGAATCAATTGCATGCTTC+CGG 0.458484 5_3:+16466863 None:intergenic
GAGATTGAGTTTCCCACAGC+TGG 0.466925 5_3:-16467020 Msa0802270:five_prime_UTR
AATATATACCTATAGCCTAT+AGG 0.467581 5_3:-16464377 None:intergenic
TACCGTTGACATTGAAATAT+GGG 0.469846 5_3:+16466019 None:intergenic
TTGCATAAGTATTTGTTTGG+TGG 0.479731 5_3:-16465769 Msa0802270:five_prime_UTR
TCAGAGTAATCAAAAGGAAA+AGG 0.483879 5_3:+16468415 None:intergenic
TTCTTCGGAGAGTCTGCGGT+TGG 0.488264 5_3:-16464734 Msa0802270:three_prime_UTR
AGTTGCGATTGTCAAAGAAA+TGG 0.492237 5_3:-16464689 Msa0802270:three_prime_UTR
CTGGAAGGTCCTGAGAAGAA+TGG 0.492934 5_3:-16465291 Msa0802270:CDS
AATTTCAAGGGTCGCGATAG+AGG 0.494818 5_3:-16465561 Msa0802270:CDS
ATTCTTCTCAGGACCTTCCA+GGG 0.499708 5_3:+16465293 None:intergenic
GGATAATCTTGATCCATTCA+AGG 0.502104 5_3:+16465660 None:intergenic
TATTACATTCATAATTTCAA+GGG 0.505529 5_3:-16465573 Msa0802270:CDS
AGTTTCCATGGAAGGTAGAA+AGG 0.512868 5_3:+16465599 None:intergenic
AGGGATCACTGCTCCTTCAA+TGG 0.515000 5_3:-16468518 Msa0802270:five_prime_UTR
GTATTACATTCATAATTTCA+AGG 0.518169 5_3:-16465574 Msa0802270:CDS
AGAAGCTCAGAGTAATCAAA+AGG 0.518809 5_3:+16468409 None:intergenic
AATGTAATACACAGTTTCCA+TGG 0.519031 5_3:+16465587 None:intergenic
ATATGTCTGTCTATATCAGC+AGG 0.519207 5_3:-16465258 Msa0802270:CDS
GGTGGGTTTATCAGAATTGG+AGG 0.528447 5_3:-16468538 Msa0802270:five_prime_UTR
CTCTTTCCTCCCATCTTCAA+CGG 0.534771 5_3:-16468679 Msa0802270:intron
CGCAGACTCTCCGAAGAAGC+CGG 0.541455 5_3:+16464739 None:intergenic
GCTGGACTCGAATCCGTACC+AGG 0.545971 5_3:-16467002 Msa0802270:intron
CGTTGAAGATGGGAGGAAAG+AGG 0.547650 5_3:+16468680 None:intergenic
AGGGCAACTTCTTTGAGAGA+TGG 0.550489 5_3:+16465227 None:intergenic
TTGTTAATACCGTTGAAGAT+GGG 0.551534 5_3:+16468670 None:intergenic
GCAAGACAATCGGCCTTCAG+TGG 0.552335 5_3:-16466162 Msa0802270:five_prime_UTR
AGTAGACTTTGCAAGACAAT+CGG 0.552548 5_3:-16466172 Msa0802270:five_prime_UTR
GAAATATATAGGACCTGGTA+CGG 0.553637 5_3:+16466989 None:intergenic
GTTGAAGATGGGAGGAAAGA+GGG 0.562202 5_3:+16468681 None:intergenic
ATGGTCAAAATCAAAGTCAA+AGG 0.562827 5_3:+16468803 None:intergenic
ATCACAGGTGATGGTGAAGG+TGG 0.566648 5_3:-16466897 Msa0802270:intron
GCGCCTTTGCAGTACTAAAG+TGG 0.580161 5_3:-16464667 Msa0802270:three_prime_UTR
AAATCGACCGTATCAGATCT+GGG 0.581224 5_3:-16465839 Msa0802270:five_prime_UTR
GAAGGTGGAATAGAGATGAC+CGG 0.583492 5_3:-16466882 Msa0802270:five_prime_UTR
TACGGATTCGAGTCCAGCTG+TGG 0.585974 5_3:+16467007 None:intergenic
GGATACACCCAGATCTGATA+CGG 0.591283 5_3:+16465832 None:intergenic
AGTTTCAGTAATAATAGTAA+TGG 0.591551 5_3:-16465176 Msa0802270:intron
TTGGTGGTGATTAAGAAATG+AGG 0.595865 5_3:-16465753 Msa0802270:five_prime_UTR
GACTTAGCACTTAATATGAG+AGG 0.596363 5_3:-16468769 Msa0802270:five_prime_UTR
CGGCTTCTTCGGAGAGTCTG+CGG 0.597922 5_3:-16464738 Msa0802270:three_prime_UTR
CTTAAAAGAAGCTCCACTGA+AGG 0.601180 5_3:+16466149 None:intergenic
TACCCATATTTCAATGTCAA+CGG 0.602169 5_3:-16466021 Msa0802270:intron
AAGCTGTCGTGAACACTGAA+CGG 0.604893 5_3:-16465884 Msa0802270:five_prime_UTR
TAATACACAGTTTCCATGGA+AGG 0.605202 5_3:+16465591 None:intergenic
TTAATACCGTTGAAGATGGG+AGG 0.606562 5_3:+16468673 None:intergenic
GCAAGCTTTGGGTAAAAGAA+CGG 0.608445 5_3:+16465636 None:intergenic
GTAGGTGCTATCCAGGACCC+TGG 0.616080 5_3:-16465310 Msa0802270:intron
GTTGACATTGAAATATGGGT+AGG 0.616675 5_3:+16466023 None:intergenic
GTGCTATCCAGGACCCTGGA+AGG 0.616742 5_3:-16465306 Msa0802270:CDS
CCGACAGGCTAGAGTTGCAG+TGG 0.618300 5_3:-16467186 Msa0802270:intron
TATTTCAGAAATGCTTGTTG+TGG 0.620508 5_3:-16465922 Msa0802270:intron
AAAAGAGAACATGATTGTTG+TGG 0.623791 5_3:+16468719 None:intergenic
AGAACATGATTGTTGTGGTG+TGG 0.624573 5_3:+16468724 None:intergenic
GTTGGCATCTGATTAACGAA+GGG 0.630829 5_3:-16464716 Msa0802270:three_prime_UTR
ACACCACTTTAGTACTGCAA+AGG 0.636660 5_3:+16464664 None:intergenic
GTCGGACAGAGTGAAGGCAG+AGG 0.640476 5_3:-16466064 Msa0802270:five_prime_UTR
GTGGGTTTATCAGAATTGGA+GGG 0.641413 5_3:-16468537 Msa0802270:five_prime_UTR
GGTTGGCATCTGATTAACGA+AGG 0.644330 5_3:-16464717 Msa0802270:three_prime_UTR
ACGGATTCGAGTCCAGCTGT+GGG 0.655887 5_3:+16467008 None:intergenic
AAACTGTACAGCAACAAACA+TGG 0.656483 5_3:+16464627 None:intergenic
AGCTTTGGGTAAAAGAACGG+TGG 0.671176 5_3:+16465639 None:intergenic
TATATCACAGGTGATGGTGA+AGG 0.681027 5_3:-16466900 Msa0802270:intron
GGAAGGTCCTGAGAAGAATG+GGG 0.693212 5_3:-16465289 Msa0802270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACTTTATTGAACATTT+AGG - chr5_3:16465037-16465056 Msa0802270:intron 15.0%
!!! TTTTTTTTATTGAACCATTT+TGG - chr5_3:16465595-16465614 Msa0802270:CDS 15.0%
!! GTTATCTTTAATATAAACAA+TGG - chr5_3:16467304-16467323 Msa0802270:intron 15.0%
!! TATTACATTCATAATTTCAA+GGG - chr5_3:16467711-16467730 Msa0802270:intron 15.0%
!!! TTCAATTTTAGTTACAAAAA+TGG - chr5_3:16468298-16468317 Msa0802270:intron 15.0%
!!! TTGTTTTCAAAACATTATTT+TGG - chr5_3:16468325-16468344 Msa0802270:intron 15.0%
!!! GAAACTTTTTCTCTTAAAAA+TGG - chr5_3:16464725-16464744 Msa0802270:three_prime_UTR 20.0%
!!! ATGTTGAGTTTTAATATTGA+TGG - chr5_3:16464954-16464973 Msa0802270:intron 20.0%
!!! TTCACTTTATGAGTTAATTT+TGG + chr5_3:16465237-16465256 None:intergenic 20.0%
!!! TCTTGATAAAAGTTTAAAAC+AGG + chr5_3:16465268-16465287 None:intergenic 20.0%
!! TTATCTAAATAAGACCAAAA+TGG + chr5_3:16465612-16465631 None:intergenic 20.0%
!!! AACTTATTATAAAGTGCTTA+TGG - chr5_3:16465646-16465665 Msa0802270:CDS 20.0%
!! CTATAACAAAAGATAAAGAA+AGG - chr5_3:16465680-16465699 Msa0802270:five_prime_UTR 20.0%
!!! CCTTTAAATTTAAAGTATTG+GGG + chr5_3:16465867-16465886 None:intergenic 20.0%
!!! CCCTTTAAATTTAAAGTATT+GGG + chr5_3:16465868-16465887 None:intergenic 20.0%
!! CCCAATACTTTAAATTTAAA+GGG - chr5_3:16465865-16465884 Msa0802270:five_prime_UTR 20.0%
!!! TCCCTTTAAATTTAAAGTAT+TGG + chr5_3:16465869-16465888 None:intergenic 20.0%
!! ATGTGAATGTTGTAAATATT+TGG + chr5_3:16466803-16466822 None:intergenic 20.0%
!! GTTTATATTAAAGATAACGA+AGG + chr5_3:16467302-16467321 None:intergenic 20.0%
!! TCTTTAATATAAACAATGGA+CGG - chr5_3:16467308-16467327 Msa0802270:intron 20.0%
!! GTATTACATTCATAATTTCA+AGG - chr5_3:16467710-16467729 Msa0802270:intron 20.0%
!!! GTGTTTATCAAATTTTATGT+AGG - chr5_3:16467956-16467975 Msa0802270:intron 20.0%
!!! AAACTGATACATCAATTTTT+CGG + chr5_3:16468093-16468112 None:intergenic 20.0%
!! AGTTTCAGTAATAATAGTAA+TGG - chr5_3:16468108-16468127 Msa0802270:intron 20.0%
!! TAATCTTAATTTATATGCCT+CGG - chr5_3:16468222-16468241 Msa0802270:intron 20.0%
!!! ACTTTTTCTCTTAAAAATGG+TGG - chr5_3:16464728-16464747 Msa0802270:three_prime_UTR 25.0%
!! CTTTTTCTCTTAAAAATGGT+GGG - chr5_3:16464729-16464748 Msa0802270:three_prime_UTR 25.0%
!! ATAGCTAATTTTCTACTTGT+AGG + chr5_3:16464794-16464813 None:intergenic 25.0%
!! TGATAAAAGTTTAAAACAGG+AGG + chr5_3:16465265-16465284 None:intergenic 25.0%
!!! TTAAAGTATTGGGGTATATT+TGG + chr5_3:16465858-16465877 None:intergenic 25.0%
! CCCCAATACTTTAAATTTAA+AGG - chr5_3:16465864-16465883 Msa0802270:five_prime_UTR 25.0%
! TAATGTGTGATGTAGTAAAA+AGG - chr5_3:16465965-16465984 Msa0802270:intron 25.0%
!! TGCTAATAAAGCACTAAAAT+TGG - chr5_3:16466068-16466087 Msa0802270:five_prime_UTR 25.0%
! TTAAGATCGTTGTTCATTAT+AGG + chr5_3:16466240-16466259 None:intergenic 25.0%
! AACCAGGAAATGAAATATAT+AGG + chr5_3:16466309-16466328 None:intergenic 25.0%
!!! ATTTCATTTCCTGGTTTTTT+TGG - chr5_3:16466313-16466332 Msa0802270:intron 25.0%
!!! TTTCATTTCCTGGTTTTTTT+GGG - chr5_3:16466314-16466333 Msa0802270:intron 25.0%
!! TTTTTACAAGTAGTGTAGAT+AGG + chr5_3:16466569-16466588 None:intergenic 25.0%
! ATTTAAGTGAAAGAAAAGCA+AGG + chr5_3:16466605-16466624 None:intergenic 25.0%
!! TGCTTTTCTTTCACTTAAAT+TGG - chr5_3:16466605-16466624 Msa0802270:intron 25.0%
!!! CTTAAATTGGAAGTTGATTT+TGG - chr5_3:16466618-16466637 Msa0802270:intron 25.0%
!!! CTCAAAATTTTGTCTAGTTT+TGG - chr5_3:16466984-16467003 Msa0802270:intron 25.0%
!!! GGAAAAAACTGATTTTTACA+AGG + chr5_3:16467080-16467099 None:intergenic 25.0%
! CCAAAATCTTGAAAAAATGA+AGG + chr5_3:16467179-16467198 None:intergenic 25.0%
!!! CCTTCATTTTTTCAAGATTT+TGG - chr5_3:16467176-16467195 Msa0802270:five_prime_UTR 25.0%
! TGTTGAGAAAGTAAAAATGT+CGG - chr5_3:16467202-16467221 Msa0802270:intron 25.0%
!! TATCTGCATAATTTTGCAAA+AGG + chr5_3:16467476-16467495 None:intergenic 25.0%
! TTCTTGCATAAGTATTTGTT+TGG - chr5_3:16467512-16467531 Msa0802270:intron 25.0%
!! AAGGATTACTATTTTCTGAA+AGG + chr5_3:16467608-16467627 None:intergenic 25.0%
! AGAAAATAGTAATCCTTGAA+TGG - chr5_3:16467611-16467630 Msa0802270:intron 25.0%
! AAACATGAAAATGAAAACCA+AGG - chr5_3:16468403-16468422 Msa0802270:five_prime_UTR 25.0%
! TTATGTACTAATAAACGAAC+AGG - chr5_3:16468513-16468532 Msa0802270:five_prime_UTR 25.0%
! TATGTACTAATAAACGAACA+GGG - chr5_3:16468514-16468533 Msa0802270:five_prime_UTR 25.0%
! AAAGAAGTGATTTGATCAAT+AGG + chr5_3:16468773-16468792 None:intergenic 25.0%
ATGGTCAAAATCAAAGTCAA+AGG + chr5_3:16464484-16464503 None:intergenic 30.0%
AAAAGAGAACATGATTGTTG+TGG + chr5_3:16464568-16464587 None:intergenic 30.0%
TTGTTAATACCGTTGAAGAT+GGG + chr5_3:16464617-16464636 None:intergenic 30.0%
! CTGATTGAAGACATTTTTGA+AGG + chr5_3:16464660-16464679 None:intergenic 30.0%
!! TATTGCTTTTCTGATTCTCT+AGG - chr5_3:16464691-16464710 Msa0802270:three_prime_UTR 30.0%
TCAGAGTAATCAAAAGGAAA+AGG + chr5_3:16464872-16464891 None:intergenic 30.0%
! TATTGATGGACAAATGTAGT+TGG - chr5_3:16464968-16464987 Msa0802270:intron 30.0%
! TTGAACATTTAGGTTCTCTT+TGG - chr5_3:16465047-16465066 Msa0802270:intron 30.0%
AATTAAGCGCTAATGCTATA+AGG + chr5_3:16465092-16465111 None:intergenic 30.0%
GCTATAAAACAAGCTGAAAA+TGG - chr5_3:16465158-16465177 Msa0802270:intron 30.0%
!! TATGAGTTAATTTTGGTCCA+TGG + chr5_3:16465230-16465249 None:intergenic 30.0%
! AGAGTCTTATCTAATCAATG+TGG - chr5_3:16465285-16465304 Msa0802270:CDS 30.0%
! GAGTCTTATCTAATCAATGT+GGG - chr5_3:16465286-16465305 Msa0802270:CDS 30.0%
!! TATTGTGGAGAGTATTAACT+TGG - chr5_3:16465561-16465580 Msa0802270:CDS 30.0%
!! ATTGTGGAGAGTATTAACTT+GGG - chr5_3:16465562-16465581 Msa0802270:CDS 30.0%
AATAAGCTGAAAACAGCTTA+AGG - chr5_3:16465770-16465789 Msa0802270:five_prime_UTR 30.0%
ATAAGCTGAAAACAGCTTAA+GGG - chr5_3:16465771-16465790 Msa0802270:five_prime_UTR 30.0%
TCGTATACTACAGAAAATTG+TGG - chr5_3:16465931-16465950 Msa0802270:intron 30.0%
ACAGAAAATTGTGGTCAAAT+AGG - chr5_3:16465940-16465959 Msa0802270:intron 30.0%
!!! CGAACTGTTTTTTAAAACCT+TGG - chr5_3:16466019-16466038 Msa0802270:intron 30.0%
!! TAGCTGTTTGTTATCTTTCA+TGG + chr5_3:16466130-16466149 None:intergenic 30.0%
GAAAGATAACAAACAGCTAA+TGG - chr5_3:16466131-16466150 Msa0802270:five_prime_UTR 30.0%
TGAGGAGAAAATCTTGTATA+AGG - chr5_3:16466214-16466233 Msa0802270:intron 30.0%
AATGAACAACGATCTTAAAC+AGG - chr5_3:16466242-16466261 Msa0802270:intron 30.0%
GAAATGAAATATATAGGACC+TGG + chr5_3:16466303-16466322 None:intergenic 30.0%
GTCCTATATATTTCATTTCC+TGG - chr5_3:16466304-16466323 Msa0802270:intron 30.0%
TTCATCAAGAAAGGAATACT+GGG + chr5_3:16466537-16466556 None:intergenic 30.0%
TTTCATCAAGAAAGGAATAC+TGG + chr5_3:16466538-16466557 None:intergenic 30.0%
! CCTTTTCATTTCATCAAGAA+AGG + chr5_3:16466546-16466565 None:intergenic 30.0%
CCTTTCTTGATGAAATGAAA+AGG - chr5_3:16466543-16466562 Msa0802270:intron 30.0%
!!! GGAAGTTGATTTTGGTTAAA+AGG - chr5_3:16466626-16466645 Msa0802270:intron 30.0%
ATGATGAAATCTAGGCTTAA+GGG + chr5_3:16466748-16466767 None:intergenic 30.0%
TTACAAATCACGGAAAACAA+TGG - chr5_3:16466840-16466859 Msa0802270:five_prime_UTR 30.0%
TACCCATATTTCAATGTCAA+CGG - chr5_3:16467263-16467282 Msa0802270:intron 30.0%
TACCGTTGACATTGAAATAT+GGG + chr5_3:16467268-16467287 None:intergenic 30.0%
TAAAGATAACGAAGGAAGTT+TGG + chr5_3:16467294-16467313 None:intergenic 30.0%
!! AGTTTCTGGTTCATGATTAT+TGG - chr5_3:16467332-16467351 Msa0802270:intron 30.0%
! TATTTCAGAAATGCTTGTTG+TGG - chr5_3:16467362-16467381 Msa0802270:intron 30.0%
TTGCATAAGTATTTGTTTGG+TGG - chr5_3:16467515-16467534 Msa0802270:intron 30.0%
AATGTAATACACAGTTTCCA+TGG + chr5_3:16467700-16467719 None:intergenic 30.0%
ATGCTTGTCATGTGATAATT+TGG - chr5_3:16467812-16467831 Msa0802270:intron 30.0%
TGCTTGTCATGTGATAATTT+GGG - chr5_3:16467813-16467832 Msa0802270:intron 30.0%
GGAAATGTTAATATCTTGCT+TGG - chr5_3:16467834-16467853 Msa0802270:intron 30.0%
GATATGTATGCAGTGAAATT+TGG - chr5_3:16467856-16467875 Msa0802270:intron 30.0%
!! ATTTTTCGGAAGAATCTCAA+GGG + chr5_3:16468079-16468098 None:intergenic 30.0%
!! AATTTTTCGGAAGAATCTCA+AGG + chr5_3:16468080-16468099 None:intergenic 30.0%
!! CTGTTTCTATAGACATGTTA+GGG + chr5_3:16468429-16468448 None:intergenic 30.0%
ATGTACTAATAAACGAACAG+GGG - chr5_3:16468515-16468534 Msa0802270:five_prime_UTR 30.0%
GCTAAGTCTAGCACATTTAA+TGG + chr5_3:16464503-16464522 None:intergenic 35.0%
GACTTAGCACTTAATATGAG+AGG - chr5_3:16464515-16464534 Msa0802270:three_prime_UTR 35.0%
!! AGGAAAGAGGGTGTTATTAT+TGG + chr5_3:16464594-16464613 None:intergenic 35.0%
GTTGTTAATACCGTTGAAGA+TGG + chr5_3:16464618-16464637 None:intergenic 35.0%
!! AATGGTGGGTTTATCAGAAT+TGG - chr5_3:16464743-16464762 Msa0802270:three_prime_UTR 35.0%
AGAAGCTCAGAGTAATCAAA+AGG + chr5_3:16464878-16464897 None:intergenic 35.0%
!! TTTTGATTACTCTGAGCTTC+TGG - chr5_3:16464877-16464896 Msa0802270:intron 35.0%
! GACTCTTTGAAAGAACATGT+TGG + chr5_3:16465397-16465416 None:intergenic 35.0%
TTACAAGTGTTTATGCCACT+AGG - chr5_3:16465417-16465436 Msa0802270:intron 35.0%
GCTTATTTAAGCTAACCTAG+TGG + chr5_3:16465435-16465454 None:intergenic 35.0%
GTATCAGGGTATGTTTGAAT+TGG + chr5_3:16465457-16465476 None:intergenic 35.0%
GTTGTAGACATTGAAAACCA+TGG - chr5_3:16465512-16465531 Msa0802270:intron 35.0%
ATTGAAAACCATGGTCACAA+TGG - chr5_3:16465521-16465540 Msa0802270:intron 35.0%
TTGAAAACCATGGTCACAAT+GGG - chr5_3:16465522-16465541 Msa0802270:intron 35.0%
GTTTGGTTATATCGGTATTG+TGG - chr5_3:16465546-16465565 Msa0802270:intron 35.0%
! TGTTTTCATAAGCGCGTTTA+TGG - chr5_3:16465806-16465825 Msa0802270:five_prime_UTR 35.0%
ATGAAAAACTTTGATGTCGC+AGG - chr5_3:16465989-16466008 Msa0802270:intron 35.0%
TGAAAAACTTTGATGTCGCA+GGG - chr5_3:16465990-16466009 Msa0802270:intron 35.0%
AAAATTGGTGTATTTCCGAC+AGG - chr5_3:16466083-16466102 Msa0802270:five_prime_UTR 35.0%
AAGTTACACACTACAAACTG+AGG - chr5_3:16466196-16466215 Msa0802270:intron 35.0%
GAAATATATAGGACCTGGTA+CGG + chr5_3:16466298-16466317 None:intergenic 35.0%
! CATCTCACTGATTATATCAC+AGG - chr5_3:16466372-16466391 Msa0802270:intron 35.0%
ACTGATTATATCACAGGTGA+TGG - chr5_3:16466378-16466397 Msa0802270:intron 35.0%
TCGTATCATATGCTATGAGT+AGG + chr5_3:16466693-16466712 None:intergenic 35.0%
ATACGAGCATCCATTATGAT+CGG - chr5_3:16466707-16466726 Msa0802270:intron 35.0%
! AAGTAGTGTACCGATCATAA+TGG + chr5_3:16466720-16466739 None:intergenic 35.0%
GATGATGAAATCTAGGCTTA+AGG + chr5_3:16466749-16466768 None:intergenic 35.0%
GCGTTGTCAATTACAAATCA+CGG - chr5_3:16466830-16466849 Msa0802270:five_prime_UTR 35.0%
!!! TTTGTCTAGTTTTGGAGAGA+TGG - chr5_3:16466992-16467011 Msa0802270:intron 35.0%
! AAGTCTACTTCATTAGCTTC+TGG + chr5_3:16467101-16467120 None:intergenic 35.0%
AGTAGACTTTGCAAGACAAT+CGG - chr5_3:16467112-16467131 Msa0802270:intron 35.0%
GTTGACATTGAAATATGGGT+AGG + chr5_3:16467264-16467283 None:intergenic 35.0%
CTACCGTTGACATTGAAATA+TGG + chr5_3:16467269-16467288 None:intergenic 35.0%
! CGGAAACTGATCATTTTCAA+TGG - chr5_3:16467420-16467439 Msa0802270:intron 35.0%
!! TTGGTGGTGATTAAGAAATG+AGG - chr5_3:16467531-16467550 Msa0802270:intron 35.0%
! AGGAGTCAAAGATGAGATTT+TGG - chr5_3:16467551-16467570 Msa0802270:intron 35.0%
! GGAGTCAAAGATGAGATTTT+GGG - chr5_3:16467552-16467571 Msa0802270:intron 35.0%
GGATAATCTTGATCCATTCA+AGG + chr5_3:16467627-16467646 None:intergenic 35.0%
TAATACACAGTTTCCATGGA+AGG + chr5_3:16467696-16467715 None:intergenic 35.0%
GGTGATATCTAGACTCTATT+TGG - chr5_3:16467877-16467896 Msa0802270:intron 35.0%
!! ATTTTATGTAGGTGCTATCC+AGG - chr5_3:16467967-16467986 Msa0802270:intron 35.0%
ATATGTCTGTCTATATCAGC+AGG - chr5_3:16468026-16468045 Msa0802270:intron 35.0%
GTAATTAAGGACACACACAA+AGG + chr5_3:16468150-16468169 None:intergenic 35.0%
TGTGTGTGTCCTTAATTACT+TGG - chr5_3:16468151-16468170 Msa0802270:intron 35.0%
GTGGATTCACCAAGTAATTA+AGG + chr5_3:16468163-16468182 None:intergenic 35.0%
! CTAACATTGGCATTAGCTTA+AGG - chr5_3:16468246-16468265 Msa0802270:intron 35.0%
! CATTAGCTTAAGGTTCTGTT+TGG - chr5_3:16468256-16468275 Msa0802270:intron 35.0%
!! GCTGTTTCTATAGACATGTT+AGG + chr5_3:16468430-16468449 None:intergenic 35.0%
TCTTCATTCAGAGACAAGAA+GGG + chr5_3:16468460-16468479 None:intergenic 35.0%
TTCTTCATTCAGAGACAAGA+AGG + chr5_3:16468461-16468480 None:intergenic 35.0%
AGTTGCGATTGTCAAAGAAA+TGG - chr5_3:16468595-16468614 Msa0802270:intron 35.0%
AAACTGTACAGCAACAAACA+TGG + chr5_3:16468660-16468679 None:intergenic 35.0%
! ATGTTTGTTGCTGTACAGTT+TGG - chr5_3:16468659-16468678 Msa0802270:intron 35.0%
! TGAGAGGTGCATGTTGTAAA+TGG - chr5_3:16464531-16464550 Msa0802270:three_prime_UTR 40.0%
AGAACATGATTGTTGTGGTG+TGG + chr5_3:16464563-16464582 None:intergenic 40.0%
TTAATACCGTTGAAGATGGG+AGG + chr5_3:16464614-16464633 None:intergenic 40.0%
GATTCTCTAGGTTCTCAAGT+TGG - chr5_3:16464703-16464722 Msa0802270:three_prime_UTR 40.0%
GTGGGTTTATCAGAATTGGA+GGG - chr5_3:16464747-16464766 Msa0802270:three_prime_UTR 40.0%
CTACTTGTAGGTACCATTGA+AGG + chr5_3:16464782-16464801 None:intergenic 40.0%
TGTTCTTCTGTTTCAGCTTC+TGG - chr5_3:16464815-16464834 Msa0802270:intron 40.0%
TGGAAACAACTTAACGTCTG+TGG + chr5_3:16465210-16465229 None:intergenic 40.0%
! CAGACGTTAAGTTGTTTCCA+TGG - chr5_3:16465210-16465229 Msa0802270:CDS 40.0%
TGGAAATTCCGCCTTTATTG+TGG + chr5_3:16465377-16465396 None:intergenic 40.0%
ACATACCCTGATACTTGAAG+AGG - chr5_3:16465463-16465482 Msa0802270:intron 40.0%
CATACCCTGATACTTGAAGA+GGG - chr5_3:16465464-16465483 Msa0802270:intron 40.0%
GAGGGTGGAATTTATAACTG+CGG - chr5_3:16465482-16465501 Msa0802270:intron 40.0%
TGAAAACCATGGTCACAATG+GGG - chr5_3:16465523-16465542 Msa0802270:intron 40.0%
! CAATGGGGGTTTGGTTATAT+CGG - chr5_3:16465538-16465557 Msa0802270:intron 40.0%
GAAAAACTTTGATGTCGCAG+GGG - chr5_3:16465991-16466010 Msa0802270:intron 40.0%
GTGCACATGATAGAAAACCA+AGG + chr5_3:16466039-16466058 None:intergenic 40.0%
AACTGTAGCCCAAAAAAACC+AGG + chr5_3:16466325-16466344 None:intergenic 40.0%
! TATATCACAGGTGATGGTGA+AGG - chr5_3:16466384-16466403 Msa0802270:intron 40.0%
ACGAATCAATTGCATGCTTC+CGG + chr5_3:16466424-16466443 None:intergenic 40.0%
! TTTTCTCTGCAGAAATGGAG+AGG + chr5_3:16466458-16466477 None:intergenic 40.0%
! CGTGATTTTCTCTGCAGAAA+TGG + chr5_3:16466463-16466482 None:intergenic 40.0%
! ACTGGGAGCATAAAGAAGAA+CGG + chr5_3:16466520-16466539 None:intergenic 40.0%
AAGCCTAGATTTCATCATCG+AGG - chr5_3:16466750-16466769 Msa0802270:intron 40.0%
CATCCTCGATGATGAAATCT+AGG + chr5_3:16466756-16466775 None:intergenic 40.0%
CTTAAAAGAAGCTCCACTGA+AGG + chr5_3:16467138-16467157 None:intergenic 40.0%
!! CAGTGGAGCTTCTTTTAAGT+TGG - chr5_3:16467139-16467158 Msa0802270:intron 40.0%
AAAAATGTCGGACAGAGTGA+AGG - chr5_3:16467214-16467233 Msa0802270:intron 40.0%
AAACAATGGACGGAAGTTTC+TGG - chr5_3:16467318-16467337 Msa0802270:intron 40.0%
AAATCGACCGTATCAGATCT+GGG - chr5_3:16467445-16467464 Msa0802270:intron 40.0%
!! GCAAGCTTTGGGTAAAAGAA+CGG + chr5_3:16467651-16467670 None:intergenic 40.0%
! TTCTTTTACCCAAAGCTTGC+TGG - chr5_3:16467651-16467670 Msa0802270:intron 40.0%
AGTTTCCATGGAAGGTAGAA+AGG + chr5_3:16467688-16467707 None:intergenic 40.0%
! GCGATAGAGGAATACTTTTC+AGG - chr5_3:16467736-16467755 Msa0802270:intron 40.0%
AGTAAAAGACACCATGCTAG+TGG + chr5_3:16468182-16468201 None:intergenic 40.0%
TATATGCCTCGGACTAACAT+TGG - chr5_3:16468233-16468252 Msa0802270:intron 40.0%
ACTAATAAACGAACAGGGGT+TGG - chr5_3:16468519-16468538 Msa0802270:five_prime_UTR 40.0%
GTTGGCATCTGATTAACGAA+GGG - chr5_3:16468568-16468587 Msa0802270:five_prime_UTR 40.0%
ACACCACTTTAGTACTGCAA+AGG + chr5_3:16468623-16468642 None:intergenic 40.0%
GTTGAAGATGGGAGGAAAGA+GGG + chr5_3:16464606-16464625 None:intergenic 45.0%
CTCTTTCCTCCCATCTTCAA+CGG - chr5_3:16464605-16464624 Msa0802270:three_prime_UTR 45.0%
! GGTGGGTTTATCAGAATTGG+AGG - chr5_3:16464746-16464765 Msa0802270:three_prime_UTR 45.0%
TCTGTTTCAGCTTCTGGTGA+TGG - chr5_3:16464821-16464840 Msa0802270:intron 45.0%
TCCACCCTCTTCAAGTATCA+GGG + chr5_3:16465471-16465490 None:intergenic 45.0%
TTCCACCCTCTTCAAGTATC+AGG + chr5_3:16465472-16465491 None:intergenic 45.0%
GAAAACCATGGTCACAATGG+GGG - chr5_3:16465524-16465543 Msa0802270:intron 45.0%
GAAGGTGGAATAGAGATGAC+CGG - chr5_3:16466402-16466421 Msa0802270:intron 45.0%
AAGCTGTCGTGAACACTGAA+CGG - chr5_3:16467400-16467419 Msa0802270:intron 45.0%
GAAATCGACCGTATCAGATC+TGG - chr5_3:16467444-16467463 Msa0802270:intron 45.0%
GGATACACCCAGATCTGATA+CGG + chr5_3:16467455-16467474 None:intergenic 45.0%
!! AGCTTTGGGTAAAAGAACGG+TGG + chr5_3:16467648-16467667 None:intergenic 45.0%
TCGTAAGTCCAGCAAGCTTT+GGG + chr5_3:16467662-16467681 None:intergenic 45.0%
TTCGTAAGTCCAGCAAGCTT+TGG + chr5_3:16467663-16467682 None:intergenic 45.0%
GAAGTCCTTTCTACCTTCCA+TGG - chr5_3:16467680-16467699 Msa0802270:intron 45.0%
AATTTCAAGGGTCGCGATAG+AGG - chr5_3:16467723-16467742 Msa0802270:intron 45.0%
ATTCTTCTCAGGACCTTCCA+GGG + chr5_3:16467994-16468013 None:intergenic 45.0%
TGGAAGGTCCTGAGAAGAAT+GGG - chr5_3:16467994-16468013 Msa0802270:intron 45.0%
TACTACTCCCCATTCTTCTC+AGG + chr5_3:16468005-16468024 None:intergenic 45.0%
! AGGGCAACTTCTTTGAGAGA+TGG + chr5_3:16468060-16468079 None:intergenic 45.0%
! ACTTGGTGAATCCACTAGCA+TGG - chr5_3:16468168-16468187 Msa0802270:intron 45.0%
CTAATGCCAATGTTAGTCCG+AGG + chr5_3:16468242-16468261 None:intergenic 45.0%
CTATAGACATGTTAGGGCCT+TGG + chr5_3:16468423-16468442 None:intergenic 45.0%
GGTTGGCATCTGATTAACGA+AGG - chr5_3:16468567-16468586 Msa0802270:five_prime_UTR 45.0%
!!! TTTATTATTTCTTTTATTTA+AGG - chr5_3:16464398-16464417 Msa0802270:three_prime_UTR 5.0%
CGTTGAAGATGGGAGGAAAG+AGG + chr5_3:16464607-16464626 None:intergenic 50.0%
AGGGATCACTGCTCCTTCAA+TGG - chr5_3:16464766-16464785 Msa0802270:intron 50.0%
!! GTGGAATGTTGGCTTTGAGG+GGG + chr5_3:16465322-16465341 None:intergenic 50.0%
!! GGTGGAATGTTGGCTTTGAG+GGG + chr5_3:16465323-16465342 None:intergenic 50.0%
!! GGGTGGAATGTTGGCTTTGA+GGG + chr5_3:16465324-16465343 None:intergenic 50.0%
! AGGCCTTGTGTTGCCTTTGA+GGG + chr5_3:16465345-16465364 None:intergenic 50.0%
! TAGGCCTTGTGTTGCCTTTG+AGG + chr5_3:16465346-16465365 None:intergenic 50.0%
TCAAAGGCAACACAAGGCCT+AGG - chr5_3:16465345-16465364 Msa0802270:intron 50.0%
CAAAGGCAACACAAGGCCTA+GGG - chr5_3:16465346-16465365 Msa0802270:intron 50.0%
CTTTATTGTGGTCCGTCCCT+AGG + chr5_3:16465365-16465384 None:intergenic 50.0%
CTAGGGACGGACCACAATAA+AGG - chr5_3:16465363-16465382 Msa0802270:intron 50.0%
ACCCTGATACTTGAAGAGGG+TGG - chr5_3:16465467-16465486 Msa0802270:intron 50.0%
GGCTAGAGTTGCAGTGGAAT+TGG - chr5_3:16466104-16466123 Msa0802270:five_prime_UTR 50.0%
GAGATTGAGTTTCCCACAGC+TGG - chr5_3:16466264-16466283 Msa0802270:intron 50.0%
! ATCACAGGTGATGGTGAAGG+TGG - chr5_3:16466387-16466406 Msa0802270:intron 50.0%
CATTCTTCTCAGGACCTTCC+AGG + chr5_3:16467995-16468014 None:intergenic 50.0%
CTGGAAGGTCCTGAGAAGAA+TGG - chr5_3:16467993-16468012 Msa0802270:intron 50.0%
GGAAGGTCCTGAGAAGAATG+GGG - chr5_3:16467995-16468014 Msa0802270:intron 50.0%
AGGACACACACAAAGGAAGC+AGG + chr5_3:16468143-16468162 None:intergenic 50.0%
GCGCCTTTGCAGTACTAAAG+TGG - chr5_3:16468617-16468636 Msa0802270:intron 50.0%
!! GAATGTTGGCTTTGAGGGGG+TGG + chr5_3:16465319-16465338 None:intergenic 55.0%
!! GGGGTGGAATGTTGGCTTTG+AGG + chr5_3:16465325-16465344 None:intergenic 55.0%
GCCAACATTCCACCCCTCAA+AGG - chr5_3:16465329-16465348 Msa0802270:intron 55.0%
! GCCTTTGAGGGGTGGAATGT+TGG + chr5_3:16465333-16465352 None:intergenic 55.0%
! CTTGTGTTGCCTTTGAGGGG+TGG + chr5_3:16465341-16465360 None:intergenic 55.0%
CACCCCTCAAAGGCAACACA+AGG - chr5_3:16465339-16465358 Msa0802270:intron 55.0%
! GGCCTTGTGTTGCCTTTGAG+GGG + chr5_3:16465344-16465363 None:intergenic 55.0%
GGGACGGACCACAATAAAGG+CGG - chr5_3:16465366-16465385 Msa0802270:intron 55.0%
CCAAACCCCCATTGTGACCA+TGG + chr5_3:16465532-16465551 None:intergenic 55.0%
CCATGGTCACAATGGGGGTT+TGG - chr5_3:16465529-16465548 Msa0802270:intron 55.0%
CCACTGCAACTCTAGCCTGT+CGG + chr5_3:16466101-16466120 None:intergenic 55.0%
ACGGATTCGAGTCCAGCTGT+GGG + chr5_3:16466279-16466298 None:intergenic 55.0%
TACGGATTCGAGTCCAGCTG+TGG + chr5_3:16466280-16466299 None:intergenic 55.0%
GCAAGACAATCGGCCTTCAG+TGG - chr5_3:16467122-16467141 Msa0802270:intron 55.0%
!! AACGAACAGGGGTTGGTCTC+CGG - chr5_3:16468526-16468545 Msa0802270:five_prime_UTR 55.0%
TTCTTCGGAGAGTCTGCGGT+TGG - chr5_3:16468550-16468569 Msa0802270:five_prime_UTR 55.0%
GGCAACACAAGGCCTAGGGA+CGG - chr5_3:16465350-16465369 Msa0802270:intron 60.0%
CCGACAGGCTAGAGTTGCAG+TGG - chr5_3:16466098-16466117 Msa0802270:five_prime_UTR 60.0%
GCTGGACTCGAATCCGTACC+AGG - chr5_3:16466282-16466301 Msa0802270:intron 60.0%
GTCGGACAGAGTGAAGGCAG+AGG - chr5_3:16467220-16467239 Msa0802270:intron 60.0%
! GTAGGTGCTATCCAGGACCC+TGG - chr5_3:16467974-16467993 Msa0802270:intron 60.0%
GTGCTATCCAGGACCCTGGA+AGG - chr5_3:16467978-16467997 Msa0802270:intron 60.0%
!! GGGTTGGTCTCCGGCTTCTT+CGG - chr5_3:16468535-16468554 Msa0802270:five_prime_UTR 60.0%
CGCAGACTCTCCGAAGAAGC+CGG + chr5_3:16468548-16468567 None:intergenic 60.0%
CGGCTTCTTCGGAGAGTCTG+CGG - chr5_3:16468546-16468565 Msa0802270:five_prime_UTR 60.0%
CTCAGGACCTTCCAGGGTCC+TGG + chr5_3:16467988-16468007 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 16464379 16468927 16464379 ID=Msa0802270;Name=Msa0802270
chr5_3 mRNA 16464379 16468927 16464379 ID=Msa0802270-mRNA-1;Parent=Msa0802270;Name=Msa0802270-mRNA-1;_AED=0.28;_eAED=0.28;_QI=1082|1|1|1|0.87|0.66|9|421|83
chr5_3 exon 16464379 16464771 16464379 ID=Msa0802270-mRNA-1:exon:6913;Parent=Msa0802270-mRNA-1
chr5_3 exon 16465177 16465328 16465177 ID=Msa0802270-mRNA-1:exon:6912;Parent=Msa0802270-mRNA-1
chr5_3 exon 16465549 16465936 16465549 ID=Msa0802270-mRNA-1:exon:6911;Parent=Msa0802270-mRNA-1
chr5_3 exon 16466022 16466214 16466022 ID=Msa0802270-mRNA-1:exon:6910;Parent=Msa0802270-mRNA-1
chr5_3 exon 16466812 16466912 16466812 ID=Msa0802270-mRNA-1:exon:6909;Parent=Msa0802270-mRNA-1
chr5_3 exon 16467003 16467042 16467003 ID=Msa0802270-mRNA-1:exon:6908;Parent=Msa0802270-mRNA-1
chr5_3 exon 16467154 16467201 16467154 ID=Msa0802270-mRNA-1:exon:6907;Parent=Msa0802270-mRNA-1
chr5_3 exon 16468402 16468593 16468402 ID=Msa0802270-mRNA-1:exon:6906;Parent=Msa0802270-mRNA-1
chr5_3 exon 16468680 16468927 16468680 ID=Msa0802270-mRNA-1:exon:6905;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16468680 16468927 16468680 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16468402 16468593 16468402 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16467154 16467201 16467154 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16467003 16467042 16467003 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16466812 16466912 16466812 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16466022 16466214 16466022 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 five_prime_UTR 16465677 16465936 16465677 ID=Msa0802270-mRNA-1:five_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 CDS 16465549 16465676 16465549 ID=Msa0802270-mRNA-1:cds;Parent=Msa0802270-mRNA-1
chr5_3 CDS 16465205 16465328 16465205 ID=Msa0802270-mRNA-1:cds;Parent=Msa0802270-mRNA-1
chr5_3 three_prime_UTR 16465177 16465204 16465177 ID=Msa0802270-mRNA-1:three_prime_utr;Parent=Msa0802270-mRNA-1
chr5_3 three_prime_UTR 16464379 16464771 16464379 ID=Msa0802270-mRNA-1:three_prime_utr;Parent=Msa0802270-mRNA-1
Gene Sequence

>Msa0802270

ATGGATCAAGATTATCCACCGTTCTTTTACCCAAAGCTTGCTGGACTTACGAAGTCCTTTCTACCTTCCATGGAAACTGTGTATTACATTCATAATTTCAAGGGTCGCGATAGAGGAATACTTTTCAGGTGCTATCCAGGACCCTGGAAGGTCCTGAGAAGAATGGGGAGTAGTAAATATGTCTGTCTATATCAGCAGGATACTATGCCATCTCTCAAAGAAGTTGCCCTTGAGATTCTTCCGAAAAATTGA

Protein sequence

>Msa0802270

MDQDYPPFFYPKLAGLTKSFLPSMETVYYIHNFKGRDRGILFRCYPGPWKVLRRMGSSKYVCLYQQDTMPSLKEVALEILPKN*