AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0066860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0066860 MtrunA17_Chr1g0178341 74.380 242 11 1 1 242 1 191 5.87e-123 347
Msa0066860 MtrunA17_Chr4g0060361 71.739 46 13 0 123 168 346 391 1.72e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0066860 AT2G36145.1 46.734 199 49 4 47 242 41 185 1.08e-46 154

Find 103 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTATCTTGTTGGAAAT+TGG 0.165195 1_2:-30965015 Msa0066860:three_prime_UTR
ATTCGATTCCCTGCTCTTTC+AGG 0.177129 1_2:-30967818 Msa0066860:intron
CATAAGGCTCCTCATGATTC+TGG 0.186944 1_2:+30965280 None:intergenic
TTTCTTGAGCCCACTCTTAT+TGG 0.224101 1_2:+30966512 None:intergenic
GCTAACTATTATTGATTATA+TGG 0.231008 1_2:+30968147 None:intergenic
TCAAAATACAAAGATTGTTT+TGG 0.243300 1_2:+30965072 None:intergenic
TACAAGTGCTGAAGAAAATA+TGG 0.272698 1_2:-30966439 Msa0066860:CDS
CTTCTGCCTAATGTACTTGT+AGG 0.275079 1_2:-30965202 Msa0066860:three_prime_UTR
GTAGCTTCCCGCGGAAGCTT+TGG 0.275230 1_2:+30967909 None:intergenic
TAGCTTCCCGCGGAAGCTTT+GGG 0.303187 1_2:+30967910 None:intergenic
TGTCTGGTCGCTTGGAAAAC+TGG 0.306117 1_2:+30965338 None:intergenic
AGATAATGCTTCATCTGTTC+AGG 0.308516 1_2:+30968198 None:intergenic
TCCCTTCTCCTACACAAGTA+TGG 0.324322 1_2:+30968118 None:intergenic
ATCTTTCATGCGCCCATGTC+TGG 0.333077 1_2:+30965322 None:intergenic
TAGAATGAAAGTTATCTTGT+TGG 0.343400 1_2:-30965022 Msa0066860:three_prime_UTR
TACCCGGTGGAGCAAGATTA+GGG 0.365827 1_2:-30965436 Msa0066860:CDS
CAGAATCATGAGGAGCCTTA+TGG 0.369861 1_2:-30965279 Msa0066860:CDS
GATTAGGGTTTATAGACATT+GGG 0.375229 1_2:-30965421 Msa0066860:CDS
TCTTGTGTATATTGACTGTT+TGG 0.377674 1_2:-30965387 Msa0066860:CDS
CAATGGTAAGTGGTAGTATA+AGG 0.379604 1_2:-30968086 Msa0066860:CDS
TGACGACGATGGAGTCTCTC+TGG 0.397446 1_2:-30967878 Msa0066860:CDS
TGCGCCCATGTCTGGTCGCT+TGG 0.407246 1_2:+30965330 None:intergenic
ATACCCGGTGGAGCAAGATT+AGG 0.409412 1_2:-30965437 Msa0066860:CDS
ATCGAATTTAGACTTCGTTT+AGG 0.414215 1_2:+30965143 None:intergenic
GTGGGCAAACAGCCTTTGCC+AGG 0.419823 1_2:-30967586 Msa0066860:CDS
AGTGTGCAGCTGAGAGGAAC+AGG 0.423390 1_2:-30968045 Msa0066860:CDS
ATAAGGCTCCTCATGATTCT+GGG 0.426970 1_2:+30965281 None:intergenic
TATGTTGACAGGCAGCTTCA+TGG 0.433103 1_2:+30967852 None:intergenic
AGGAAGCGGCTGCGAAGCAC+GGG 0.455528 1_2:+30967949 None:intergenic
AGATACAAGTGAGTTATGAT+TGG 0.457239 1_2:-30965118 Msa0066860:three_prime_UTR
AGATTAGGGTTTATAGACAT+TGG 0.474730 1_2:-30965422 Msa0066860:CDS
TCAGGTTTATGTGGAACAAA+TGG 0.483570 1_2:+30968216 None:intergenic
TTCTGCCTAATGTACTTGTA+GGG 0.486952 1_2:-30965201 Msa0066860:three_prime_UTR
AAACACCCTACAAGTACATT+AGG 0.487648 1_2:+30965196 None:intergenic
TTCATCTGTTCAGGTTTATG+TGG 0.489318 1_2:+30968207 None:intergenic
CTCTGAAGGTCTATGTTGAC+AGG 0.491476 1_2:+30967841 None:intergenic
GAGAATGGTGGGTGGTATTG+TGG 0.491715 1_2:+30967971 None:intergenic
AAACCCTAATCTTGCTCCAC+CGG 0.495626 1_2:+30965433 None:intergenic
CTGAAGAAAATATGGATGTT+CGG 0.496063 1_2:-30966431 Msa0066860:CDS
GGCTGCGAAGCACGGGAGAA+TGG 0.496064 1_2:+30967956 None:intergenic
GATACAAGTGAGTTATGATT+GGG 0.507283 1_2:-30965117 Msa0066860:three_prime_UTR
ATATATATACCTGAAAGAGC+AGG 0.507742 1_2:+30967809 None:intergenic
TATTGTGGTAATTAGAAATG+AGG 0.516080 1_2:+30967986 None:intergenic
CTCATGATTCTGGGCTCACC+CGG 0.516530 1_2:+30965290 None:intergenic
GCTGAGAAGGCAGAGGAACA+TGG 0.523707 1_2:+30968013 None:intergenic
GCGAAGCACGGGAGAATGGT+GGG 0.526904 1_2:+30967960 None:intergenic
AAGGAAGCGGCTGCGAAGCA+CGG 0.528983 1_2:+30967948 None:intergenic
AAAGTGGTAGACTGGCTCCC+TGG 0.531601 1_2:+30967568 None:intergenic
ACTTCTGAAGAGCTTCCATA+AGG 0.531730 1_2:+30965264 None:intergenic
CATGAAAGATAAGGTGCCGC+CGG 0.533196 1_2:-30965309 Msa0066860:CDS
AGGCGTGGAAAGTGGTAGAC+TGG 0.536072 1_2:+30967560 None:intergenic
GAAATGAGGGAGTGCTGAGA+AGG 0.539560 1_2:+30968000 None:intergenic
GTAGACTGGCTCCCTGGCAA+AGG 0.542128 1_2:+30967574 None:intergenic
ATTGTGGTAATTAGAAATGA+GGG 0.543828 1_2:+30967987 None:intergenic
CATAACTAATGTTGTATATG+TGG 0.547143 1_2:-30965048 Msa0066860:three_prime_UTR
CACCATACTTGTGTAGGAGA+AGG 0.552080 1_2:-30968120 Msa0066860:five_prime_UTR
GGCGGCACCCAAAGCTTCCG+CGG 0.552892 1_2:-30967917 Msa0066860:CDS
GTTCAGATTGCCTCATTGTG+AGG 0.553621 1_2:-30965239 Msa0066860:exon
ACCACTTTCCACGCCTCTCA+AGG 0.558258 1_2:-30967553 Msa0066860:intron
CCGCCACTGTGAGAAGGAAG+CGG 0.559280 1_2:+30967935 None:intergenic
AACCCTAATCTTGCTCCACC+GGG 0.559641 1_2:+30965434 None:intergenic
GAGACTCCATCGTCGTCAGT+GGG 0.564659 1_2:+30967883 None:intergenic
ATGAAAGATAAGGTGCCGCC+GGG 0.567047 1_2:-30965308 Msa0066860:CDS
GACGACGATGGAGTCTCTCT+GGG 0.569446 1_2:-30967877 Msa0066860:CDS
ACCTTGAGAGGCGTGGAAAG+TGG 0.572117 1_2:+30967552 None:intergenic
AGCTTGAAACCAATAAGAGT+GGG 0.572575 1_2:-30966521 Msa0066860:CDS
AGGGAGTGCTGAGAAGGCAG+AGG 0.573573 1_2:+30968006 None:intergenic
AAAGGCATGGCAATGGTAAG+TGG 0.575949 1_2:-30968096 Msa0066860:exon
TGCGAAGCACGGGAGAATGG+TGG 0.579170 1_2:+30967959 None:intergenic
AAGAGTGGGCTCAAGAAATG+TGG 0.581684 1_2:-30966507 Msa0066860:CDS
GCGGCACCCAAAGCTTCCGC+GGG 0.584984 1_2:-30967916 Msa0066860:CDS
ACATGGGCGCATGAAAGATA+AGG 0.585008 1_2:-30965318 Msa0066860:CDS
TTCAATCAAATCATCATCAG+TGG 0.585107 1_2:+30966407 None:intergenic
ACCATACTTGTGTAGGAGAA+GGG 0.586181 1_2:-30968119 Msa0066860:five_prime_UTR
ATTAGGGTTTATAGACATTG+GGG 0.590232 1_2:-30965420 Msa0066860:CDS
CTGAGAAGGCAGAGGAACAT+GGG 0.590908 1_2:+30968014 None:intergenic
TTATATATGTGTACCTTGAG+AGG 0.592519 1_2:+30967540 None:intergenic
AAGCTTGAAACCAATAAGAG+TGG 0.593042 1_2:-30966522 Msa0066860:CDS
AGAGACTCCATCGTCGTCAG+TGG 0.598675 1_2:+30967882 None:intergenic
TTATTGGTTTCAAGCTTGCG+TGG 0.600436 1_2:+30966528 None:intergenic
TGGGTGCCGCCACTGTGAGA+AGG 0.603138 1_2:+30967929 None:intergenic
TGGGCAAACAGCCTTTGCCA+GGG 0.603588 1_2:-30967585 Msa0066860:CDS
TATATATACCTGAAAGAGCA+GGG 0.607634 1_2:+30967810 None:intergenic
CTACAAGTACATTAGGCAGA+AGG 0.612908 1_2:+30965203 None:intergenic
AAACAGGTTGACAAAATACC+CGG 0.616364 1_2:-30965452 Msa0066860:intron
GCTACACACCATACTTGTGT+AGG 0.621822 1_2:-30968126 Msa0066860:five_prime_UTR
GCAGGGAATCGAATCTCTGA+AGG 0.624992 1_2:+30967827 None:intergenic
AGAAGGGAAAGGCATGGCAA+TGG 0.626726 1_2:-30968103 Msa0066860:exon
CCGCTTCCTTCTCACAGTGG+CGG 0.641992 1_2:-30967935 Msa0066860:CDS
TGTAGGAGAAGGGAAAGGCA+TGG 0.654222 1_2:-30968109 Msa0066860:exon
AGTGGGGCTGTAGCTTCCCG+CGG 0.657108 1_2:+30967900 None:intergenic
GTGGGCTCAAGAAATGTGGA+AGG 0.659484 1_2:-30966503 Msa0066860:CDS
CTGGTCGCTTGGAAAACTGG+AGG 0.670468 1_2:+30965341 None:intergenic
TACAGCCCCACTGACGACGA+TGG 0.677846 1_2:-30967889 Msa0066860:CDS
ACTTGTGTAGGAGAAGGGAA+AGG 0.684749 1_2:-30968114 Msa0066860:five_prime_UTR
CAGCCGCTTCCTTCTCACAG+TGG 0.684846 1_2:-30967938 Msa0066860:CDS
TATGTGTACCTTGAGAGGCG+TGG 0.685226 1_2:+30967545 None:intergenic
ATGATTCTGGGCTCACCCGG+CGG 0.687233 1_2:+30965293 None:intergenic
TGCTTGAGTGTGCAGCTGAG+AGG 0.688346 1_2:-30968051 Msa0066860:CDS
CGGGTGAGCCCAGAATCATG+AGG 0.694987 1_2:-30965289 Msa0066860:CDS
AGACTCCATCGTCGTCAGTG+GGG 0.711189 1_2:+30967884 None:intergenic
CAGGTTGACAAAATACCCGG+TGG 0.732626 1_2:-30965449 Msa0066860:CDS
AAGCACGGGAGAATGGTGGG+TGG 0.747034 1_2:+30967963 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTATTTCGATTAA+AGG + chr1_2:30965042-30965061 None:intergenic 10.0%
!! TATATTATACTACTATGTTT+AGG - chr1_2:30965419-30965438 Msa0066860:CDS 15.0%
!! GTTAAATATAAGAATAATGT+TGG + chr1_2:30965535-30965554 None:intergenic 15.0%
!!! AAATTTCAAGTTAAACTAAT+AGG + chr1_2:30965740-30965759 None:intergenic 15.0%
!! AAAATCCAAAAATAAGTTAA+GGG + chr1_2:30965867-30965886 None:intergenic 15.0%
!! TAAAATCCAAAAATAAGTTA+AGG + chr1_2:30965868-30965887 None:intergenic 15.0%
!!! CTTATTTTTGGATTTTAATT+TGG - chr1_2:30965871-30965890 Msa0066860:intron 15.0%
!!! AATTTCTTTTAAGAATGTTA+AGG - chr1_2:30966947-30966966 Msa0066860:intron 15.0%
!! TATAATTTGAATTTCTAACT+AGG + chr1_2:30967403-30967422 None:intergenic 15.0%
!! TTAGAAATTCAAATTATAGA+TGG - chr1_2:30967405-30967424 Msa0066860:intron 15.0%
!! TCATTTCAATTTAATAAAAC+AGG - chr1_2:30967742-30967761 Msa0066860:intron 15.0%
!!! ATTTTATTTCGATTAAAGGT+AGG + chr1_2:30965038-30965057 None:intergenic 20.0%
!!! GCTAACTATTATTGATTATA+TGG + chr1_2:30965066-30965085 None:intergenic 20.0%
!! ATATAAGAATAATGTTGGTA+AGG + chr1_2:30965530-30965549 None:intergenic 20.0%
!! TTTAGGCTTAATTAATACTT+TGG - chr1_2:30965840-30965859 Msa0066860:intron 20.0%
!!! AGTTTTTTGACAAAAACTAA+CGG + chr1_2:30967172-30967191 None:intergenic 20.0%
!!! TTAATTTGAGATTTTAGTGA+AGG + chr1_2:30966350-30966369 None:intergenic 20.0%
!! CACTAAAATCTCAAATTAAT+TGG - chr1_2:30966351-30966370 Msa0066860:intron 20.0%
!!! ATGATTATGATTCTTGTTTT+GGG - chr1_2:30966920-30966939 Msa0066860:intron 20.0%
!!! CTTATTTTTGGATTTCAATT+TGG + chr1_2:30967265-30967284 None:intergenic 20.0%
!! TGAAATCCAAAAATAAGTTA+AGG - chr1_2:30967268-30967287 Msa0066860:intron 20.0%
!! GAAATCCAAAAATAAGTTAA+GGG - chr1_2:30967269-30967288 Msa0066860:intron 20.0%
!!! CAAAATACAAAGATTGTTTT+GGG + chr1_2:30968140-30968159 None:intergenic 20.0%
!!! TCAAAATACAAAGATTGTTT+TGG + chr1_2:30968141-30968160 None:intergenic 20.0%
! ATTGTGGTAATTAGAAATGA+GGG + chr1_2:30965226-30965245 None:intergenic 25.0%
! TATTGTGGTAATTAGAAATG+AGG + chr1_2:30965227-30965246 None:intergenic 25.0%
!! ATTATAAGTTTGTTCGTCAA+TGG + chr1_2:30965591-30965610 None:intergenic 25.0%
!! CAAACTTATAATTTGTGTTG+TGG - chr1_2:30965599-30965618 Msa0066860:intron 25.0%
! TAAGCCTAAAACAAATCAAA+TGG + chr1_2:30965830-30965849 None:intergenic 25.0%
!! TTTGAGACAGTTTAAAGTTA+GGG + chr1_2:30967237-30967256 None:intergenic 25.0%
!! TTGTTGTTGATGAAGAAATA+GGG + chr1_2:30966108-30966127 None:intergenic 25.0%
!! ATTGTTGTTGATGAAGAAAT+AGG + chr1_2:30966109-30966128 None:intergenic 25.0%
! TTGTATTCATCCATCTAAAA+AGG - chr1_2:30966239-30966258 Msa0066860:intron 25.0%
! GAATTTGAATCTCTCTATTA+TGG - chr1_2:30966638-30966657 Msa0066860:intron 25.0%
!!! GATGATTATGATTCTTGTTT+TGG - chr1_2:30966919-30966938 Msa0066860:intron 25.0%
! AGAATGTTAAGGAAAATGAA+AGG - chr1_2:30966958-30966977 Msa0066860:intron 25.0%
!! TTTTGACAAAAACTAACAGA+AGG - chr1_2:30967176-30967195 Msa0066860:intron 25.0%
! TTTGACAAAAACTAACAGAA+GGG - chr1_2:30967177-30967196 Msa0066860:intron 25.0%
!! TTTGAGACAGTTTAAAGTTA+GGG - chr1_2:30967237-30967256 Msa0066860:intron 25.0%
! ACTTAAGGAACTTAAAACAA+AGG + chr1_2:30967313-30967332 None:intergenic 25.0%
!!! TAACACCGTGTTTTAAATAA+CGG - chr1_2:30967428-30967447 Msa0066860:intron 25.0%
! TTATTGTAGTGTATAGTCTA+GGG + chr1_2:30967569-30967588 None:intergenic 25.0%
! ATTAAAAAAACCTCACAATG+AGG + chr1_2:30967984-30968003 None:intergenic 25.0%
! CATAACTAATGTTGTATATG+TGG - chr1_2:30968162-30968181 Msa0066860:five_prime_UTR 25.0%
! TAGAATGAAAGTTATCTTGT+TGG - chr1_2:30968188-30968207 Msa0066860:five_prime_UTR 25.0%
! AAAGTTATCTTGTTGGAAAT+TGG - chr1_2:30968195-30968214 Msa0066860:five_prime_UTR 25.0%
TATATATACCTGAAAGAGCA+GGG + chr1_2:30965403-30965422 None:intergenic 30.0%
ATATATATACCTGAAAGAGC+AGG + chr1_2:30965404-30965423 None:intergenic 30.0%
ATGTTGAAGAAACGCAATTT+AGG + chr1_2:30965460-30965479 None:intergenic 30.0%
TTATATATGTGTACCTTGAG+AGG + chr1_2:30965673-30965692 None:intergenic 30.0%
AACAATGAAATGCACTAACA+AGG + chr1_2:30965710-30965729 None:intergenic 30.0%
!!! GTAGCCATTTGATTTGTTTT+AGG - chr1_2:30965823-30965842 Msa0066860:intron 30.0%
!! TTGGTCCCTTAACTTATTTT+TGG - chr1_2:30965859-30965878 Msa0066860:intron 30.0%
! TTGAGACAGTTTAAAGTTAG+GGG + chr1_2:30967238-30967257 None:intergenic 30.0%
!! CTTTGAGACAGTTTAAAGTT+AGG + chr1_2:30967236-30967255 None:intergenic 30.0%
AACTTTAAACTGTCTCAAAG+TGG - chr1_2:30965900-30965919 Msa0066860:intron 30.0%
GTAAACGGATGTATACTTAA+GGG + chr1_2:30965927-30965946 None:intergenic 30.0%
AGTAAACGGATGTATACTTA+AGG + chr1_2:30965928-30965947 None:intergenic 30.0%
TATACATCCGTTTACTATAG+TGG - chr1_2:30965932-30965951 Msa0066860:intron 30.0%
TTTGACAAAAACTAACGGAA+GGG + chr1_2:30965959-30965978 None:intergenic 30.0%
! TTTTGACAAAAACTAACGGA+AGG + chr1_2:30965960-30965979 None:intergenic 30.0%
! TGTTGTTGATGAAGAAATAG+GGG + chr1_2:30966107-30966126 None:intergenic 30.0%
GATGAAGAAATAGTTGTTGA+TGG + chr1_2:30966139-30966158 None:intergenic 30.0%
TCCATCTAAAAAGGAAGAAA+AGG - chr1_2:30966248-30966267 Msa0066860:intron 30.0%
! TCCTTTTCTTCCTTTTTAGA+TGG + chr1_2:30966252-30966271 None:intergenic 30.0%
! TTTCTTCTTCACGATTTTGA+TGG + chr1_2:30966301-30966320 None:intergenic 30.0%
TCAAAATCGTGAAGAAGAAA+AGG - chr1_2:30966301-30966320 Msa0066860:intron 30.0%
TTAAAGGTTGAAACTTTGGA+GGG + chr1_2:30966492-30966511 None:intergenic 30.0%
AAGGTTAAAGGTTGAAACTT+TGG + chr1_2:30966496-30966515 None:intergenic 30.0%
ATTAGCATGAATTGGGAAAT+GGG + chr1_2:30966529-30966548 None:intergenic 30.0%
GGATTTGATTAGCATGAATT+GGG + chr1_2:30966536-30966555 None:intergenic 30.0%
TGGATTTGATTAGCATGAAT+TGG + chr1_2:30966537-30966556 None:intergenic 30.0%
AAAATGGAAATTGGAAATGG+TGG + chr1_2:30966557-30966576 None:intergenic 30.0%
TGGAAAATGGAAATTGGAAA+TGG + chr1_2:30966560-30966579 None:intergenic 30.0%
ATCCGAATTCAAAGAGAAAA+AGG - chr1_2:30966586-30966605 Msa0066860:intron 30.0%
TCCGAATTCAAAGAGAAAAA+GGG - chr1_2:30966587-30966606 Msa0066860:intron 30.0%
! ACCCTTTTTCTCTTTGAATT+CGG + chr1_2:30966591-30966610 None:intergenic 30.0%
AAGAGAGTCAAAGAGAAAAA+GGG - chr1_2:30966613-30966632 Msa0066860:intron 30.0%
!! TACAAGTGCTGAAGAAAATA+TGG - chr1_2:30966771-30966790 Msa0066860:intron 30.0%
CTGAAGAAAATATGGATGTT+CGG - chr1_2:30966779-30966798 Msa0066860:intron 30.0%
TTCAATCAAATCATCATCAG+TGG + chr1_2:30966806-30966825 None:intergenic 30.0%
TGTCATTCTCAAACTTTGTT+TGG - chr1_2:30966855-30966874 Msa0066860:intron 30.0%
TAAGGAAAATGAAAGGAAGA+TGG - chr1_2:30966965-30966984 Msa0066860:intron 30.0%
! TTGGATTTAAAAAGCACACA+TGG + chr1_2:30967110-30967129 None:intergenic 30.0%
AACTTTAAACTGTCTCAAAG+TGG + chr1_2:30965900-30965919 None:intergenic 30.0%
!! CTTTGAGACAGTTTAAAGTT+AGG - chr1_2:30967236-30967255 Msa0066860:intron 30.0%
! TTGAGACAGTTTAAAGTTAG+GGG - chr1_2:30967238-30967257 Msa0066860:intron 30.0%
!! TTGGTCCCTTAACTTATTTT+TGG + chr1_2:30965859-30965878 None:intergenic 30.0%
AAAATAAGTTAAGGGACCAA+AGG - chr1_2:30967277-30967296 Msa0066860:intron 30.0%
CAAAGGCTTAATTAAACCTT+TGG + chr1_2:30967296-30967315 None:intergenic 30.0%
TAAGTTCCTTAAGTTTATGC+TGG - chr1_2:30967319-30967338 Msa0066860:intron 30.0%
TTTGAATTTCTAACTAGGCT+AGG + chr1_2:30967398-30967417 None:intergenic 30.0%
! CATGACCGTTATTTAAAACA+CGG + chr1_2:30967436-30967455 None:intergenic 30.0%
CTTATTGTAGTGTATAGTCT+AGG + chr1_2:30967570-30967589 None:intergenic 30.0%
GACTATACACTACAATAAGA+TGG - chr1_2:30967571-30967590 Msa0066860:CDS 30.0%
AGATTAGGGTTTATAGACAT+TGG - chr1_2:30967788-30967807 Msa0066860:intron 30.0%
GATTAGGGTTTATAGACATT+GGG - chr1_2:30967789-30967808 Msa0066860:intron 30.0%
ATTAGGGTTTATAGACATTG+GGG - chr1_2:30967790-30967809 Msa0066860:intron 30.0%
! TCTTGTGTATATTGACTGTT+TGG - chr1_2:30967823-30967842 Msa0066860:CDS 30.0%
ATCGAATTTAGACTTCGTTT+AGG + chr1_2:30968070-30968089 None:intergenic 30.0%
AGATACAAGTGAGTTATGAT+TGG - chr1_2:30968092-30968111 Msa0066860:CDS 30.0%
GATACAAGTGAGTTATGATT+GGG - chr1_2:30968093-30968112 Msa0066860:CDS 30.0%
TCAGGTTTATGTGGAACAAA+TGG + chr1_2:30964997-30965016 None:intergenic 35.0%
! TTCATCTGTTCAGGTTTATG+TGG + chr1_2:30965006-30965025 None:intergenic 35.0%
AGATAATGCTTCATCTGTTC+AGG + chr1_2:30965015-30965034 None:intergenic 35.0%
CAATGGTAAGTGGTAGTATA+AGG - chr1_2:30965124-30965143 Msa0066860:three_prime_UTR 35.0%
! TATAATTTGTGTTGTGGCAG+TGG - chr1_2:30965605-30965624 Msa0066860:intron 35.0%
! ATAATTTGTGTTGTGGCAGT+GGG - chr1_2:30965606-30965625 Msa0066860:intron 35.0%
TGAAATGCACTAACAAGGAA+CGG + chr1_2:30965705-30965724 None:intergenic 35.0%
TTGATACTCTTAGCTTCCTA+TGG - chr1_2:30965801-30965820 Msa0066860:intron 35.0%
ACAAATCAAATGGCTACCAT+AGG + chr1_2:30965820-30965839 None:intergenic 35.0%
!!! CAGTTTTGATTGGTGATCAA+TGG - chr1_2:30966003-30966022 Msa0066860:intron 35.0%
! TTTGATTGGTGATCAATGGT+TGG - chr1_2:30966007-30966026 Msa0066860:intron 35.0%
! TTGGATTTGAAAAGCACACA+TGG - chr1_2:30966026-30966045 Msa0066860:intron 35.0%
AAGAAATAGGGGTGAAGAAA+TGG + chr1_2:30966096-30966115 None:intergenic 35.0%
! GAAAAGGTTGTTGTTGTTGA+TGG + chr1_2:30966163-30966182 None:intergenic 35.0%
GATGTTTGTGGTTGTTGAAA+AGG + chr1_2:30966179-30966198 None:intergenic 35.0%
AATTGAGATCGAGATGTTTG+TGG + chr1_2:30966191-30966210 None:intergenic 35.0%
GAGAATTGAGATCTGGATAT+GGG + chr1_2:30966397-30966416 None:intergenic 35.0%
AGAGAATTGAGATCTGGATA+TGG + chr1_2:30966398-30966417 None:intergenic 35.0%
!! TTGGTGATGATTTGAGTGAT+GGG + chr1_2:30966449-30966468 None:intergenic 35.0%
GTTAAAGGTTGAAACTTTGG+AGG + chr1_2:30966493-30966512 None:intergenic 35.0%
!!! GGGTTTTGAGAAAAGGTTAA+AGG + chr1_2:30966508-30966527 None:intergenic 35.0%
TTAGCATGAATTGGGAAATG+GGG + chr1_2:30966528-30966547 None:intergenic 35.0%
GATTAGCATGAATTGGGAAA+TGG + chr1_2:30966530-30966549 None:intergenic 35.0%
TCAGACTGGAAAATGGAAAT+TGG + chr1_2:30966566-30966585 None:intergenic 35.0%
GAAGAGAGTCAAAGAGAAAA+AGG - chr1_2:30966612-30966631 Msa0066860:intron 35.0%
AAGCTTGAAACCAATAAGAG+TGG - chr1_2:30966688-30966707 Msa0066860:intron 35.0%
AGCTTGAAACCAATAAGAGT+GGG - chr1_2:30966689-30966708 Msa0066860:intron 35.0%
! TTTTCTTCAGCACTTGTAGT+AGG + chr1_2:30966769-30966788 None:intergenic 35.0%
! GATGGTGTGTAGTAATTTTC+AGG - chr1_2:30966989-30967008 Msa0066860:intron 35.0%
! TAAAAAGCACACATGGCATA+CGG + chr1_2:30967103-30967122 None:intergenic 35.0%
!! TTTTCTTGGTGATCAATGGT+TGG + chr1_2:30967129-30967148 None:intergenic 35.0%
!! CAGTTTTTCTTGGTGATCAA+TGG + chr1_2:30967133-30967152 None:intergenic 35.0%
CATACATCCGTTTACTATAG+TGG + chr1_2:30967204-30967223 None:intergenic 35.0%
AGTAAACGGATGTATGCTTA+AGG - chr1_2:30967208-30967227 Msa0066860:intron 35.0%
GTAAACGGATGTATGCTTAA+GGG - chr1_2:30967209-30967228 Msa0066860:intron 35.0%
AGCTATCCAGCATAAACTTA+AGG + chr1_2:30967328-30967347 None:intergenic 35.0%
!! CGTGTTTTAAATAACGGTCA+TGG - chr1_2:30967434-30967453 Msa0066860:intron 35.0%
CTTGATTCTCCATAATAGCA+AGG + chr1_2:30967484-30967503 None:intergenic 35.0%
!! CTTGCTATTATGGAGAATCA+AGG - chr1_2:30967482-30967501 Msa0066860:intron 35.0%
ATTATGGAGAATCAAGGTTG+CGG - chr1_2:30967488-30967507 Msa0066860:intron 35.0%
AGTGTTTGTGACATTGTTCT+TGG + chr1_2:30967638-30967657 None:intergenic 35.0%
! AAACAGGTTGACAAAATACC+CGG - chr1_2:30967758-30967777 Msa0066860:intron 35.0%
! ACTGGAGGAGAATTTTCATT+TGG + chr1_2:30967857-30967876 None:intergenic 35.0%
TTCTGCCTAATGTACTTGTA+GGG - chr1_2:30968009-30968028 Msa0066860:CDS 35.0%
AAACACCCTACAAGTACATT+AGG + chr1_2:30968017-30968036 None:intergenic 35.0%
ACCATACTTGTGTAGGAGAA+GGG - chr1_2:30965091-30965110 Msa0066860:three_prime_UTR 40.0%
GAAATGCACTAACAAGGAAC+GGG + chr1_2:30965704-30965723 None:intergenic 40.0%
GAAGGGACCACTATAGTAAA+CGG + chr1_2:30967194-30967213 None:intergenic 40.0%
! TGAAAAGCACACATGGCATA+CGG - chr1_2:30966033-30966052 Msa0066860:intron 40.0%
TGGAAGAGAGAATTGAGATC+TGG + chr1_2:30966404-30966423 None:intergenic 40.0%
!! TAAACGTGGAGATGGTTTTG+TGG + chr1_2:30966424-30966443 None:intergenic 40.0%
! TTGAGTGATGGGATTAAACG+TGG + chr1_2:30966438-30966457 None:intergenic 40.0%
!! GTTGGTGATGATTTGAGTGA+TGG + chr1_2:30966450-30966469 None:intergenic 40.0%
AAAGAGAAGGATTGTGAGGT+TGG + chr1_2:30966468-30966487 None:intergenic 40.0%
! AACTTTGGAGGGAAAAGAGA+AGG + chr1_2:30966481-30966500 None:intergenic 40.0%
!!! GGAAATGGGGTTTTGAGAAA+AGG + chr1_2:30966515-30966534 None:intergenic 40.0%
TTCGGATTCAGACTGGAAAA+TGG + chr1_2:30966573-30966592 None:intergenic 40.0%
CTTTGAATTCGGATTCAGAC+TGG + chr1_2:30966580-30966599 None:intergenic 40.0%
!! TTATTGGTTTCAAGCTTGCG+TGG + chr1_2:30966685-30966704 None:intergenic 40.0%
TTTCTTGAGCCCACTCTTAT+TGG + chr1_2:30966701-30966720 None:intergenic 40.0%
AAATGAAAGGAAGATGGCGA+TGG - chr1_2:30966971-30966990 Msa0066860:intron 40.0%
GAAGGGACCACTATAGTAAA+CGG - chr1_2:30967194-30967213 Msa0066860:intron 40.0%
!! AGTCGTGATCCTTGCTATTA+TGG - chr1_2:30967472-30967491 Msa0066860:intron 40.0%
TCGGGATGGCATTACAATTT+CGG - chr1_2:30967526-30967545 Msa0066860:intron 40.0%
GGTACATAGTACTTAGCTGT+AGG + chr1_2:30967617-30967636 None:intergenic 40.0%
ATAAGGCTCCTCATGATTCT+GGG + chr1_2:30967932-30967951 None:intergenic 40.0%
! ACTTCTGAAGAGCTTCCATA+AGG + chr1_2:30967949-30967968 None:intergenic 40.0%
CTACAAGTACATTAGGCAGA+AGG + chr1_2:30968010-30968029 None:intergenic 40.0%
CTTCTGCCTAATGTACTTGT+AGG - chr1_2:30968008-30968027 Msa0066860:CDS 40.0%
GCTACACACCATACTTGTGT+AGG - chr1_2:30965084-30965103 Msa0066860:three_prime_UTR 45.0%
CACCATACTTGTGTAGGAGA+AGG - chr1_2:30965090-30965109 Msa0066860:three_prime_UTR 45.0%
TCCCTTCTCCTACACAAGTA+TGG + chr1_2:30965095-30965114 None:intergenic 45.0%
ACTTGTGTAGGAGAAGGGAA+AGG - chr1_2:30965096-30965115 Msa0066860:three_prime_UTR 45.0%
! AAAGGCATGGCAATGGTAAG+TGG - chr1_2:30965114-30965133 Msa0066860:three_prime_UTR 45.0%
TATGTTGACAGGCAGCTTCA+TGG + chr1_2:30965361-30965380 None:intergenic 45.0%
! CTCTGAAGGTCTATGTTGAC+AGG + chr1_2:30965372-30965391 None:intergenic 45.0%
ATTCGATTCCCTGCTCTTTC+AGG - chr1_2:30965392-30965411 Msa0066860:CDS 45.0%
TCAAAACTGACACGTGGCAA+AGG + chr1_2:30965992-30966011 None:intergenic 45.0%
!! TGCCACGTGTCAGTTTTGAT+TGG - chr1_2:30965993-30966012 Msa0066860:intron 45.0%
CACCAATCAAAACTGACACG+TGG + chr1_2:30965998-30966017 None:intergenic 45.0%
TAGGGGTGAAGAAATGGTGA+TGG + chr1_2:30966090-30966109 None:intergenic 45.0%
ATGGGTCGTGAAGATGATGA+TGG + chr1_2:30966379-30966398 None:intergenic 45.0%
GATGGGATTAAACGTGGAGA+TGG + chr1_2:30966432-30966451 None:intergenic 45.0%
GGGAAAAGAGAAGGATTGTG+AGG + chr1_2:30966472-30966491 None:intergenic 45.0%
! AAGAGTGGGCTCAAGAAATG+TGG - chr1_2:30966703-30966722 Msa0066860:intron 45.0%
CACCAAGAAAAACTGACACG+TGG - chr1_2:30967138-30967157 Msa0066860:intron 45.0%
! TGCCACGTGTCAGTTTTTCT+TGG + chr1_2:30967143-30967162 None:intergenic 45.0%
GAAAAACTGACACGTGGCAA+AGG - chr1_2:30967144-30967163 Msa0066860:intron 45.0%
TTGTAATGCCATCCCGATTG+AGG + chr1_2:30967523-30967542 None:intergenic 45.0%
AAACCCTAATCTTGCTCCAC+CGG + chr1_2:30967780-30967799 None:intergenic 45.0%
! TTTTCCAAGCGACCAGACAT+GGG - chr1_2:30967876-30967895 Msa0066860:CDS 45.0%
ACATGGGCGCATGAAAGATA+AGG - chr1_2:30967892-30967911 Msa0066860:CDS 45.0%
CATAAGGCTCCTCATGATTC+TGG + chr1_2:30967933-30967952 None:intergenic 45.0%
CAGAATCATGAGGAGCCTTA+TGG - chr1_2:30967931-30967950 Msa0066860:CDS 45.0%
GTTCAGATTGCCTCATTGTG+AGG - chr1_2:30967971-30967990 Msa0066860:CDS 45.0%
TGTAGGAGAAGGGAAAGGCA+TGG - chr1_2:30965101-30965120 Msa0066860:three_prime_UTR 50.0%
! AGAAGGGAAAGGCATGGCAA+TGG - chr1_2:30965107-30965126 Msa0066860:three_prime_UTR 50.0%
CTGAGAAGGCAGAGGAACAT+GGG + chr1_2:30965199-30965218 None:intergenic 50.0%
!! GAAATGAGGGAGTGCTGAGA+AGG + chr1_2:30965213-30965232 None:intergenic 50.0%
!! GAGAATGGTGGGTGGTATTG+TGG + chr1_2:30965242-30965261 None:intergenic 50.0%
GCAGGGAATCGAATCTCTGA+AGG + chr1_2:30965386-30965405 None:intergenic 50.0%
TATGTGTACCTTGAGAGGCG+TGG + chr1_2:30965668-30965687 None:intergenic 50.0%
AAAGCACACATGGCATACGG+TGG - chr1_2:30966036-30966055 Msa0066860:intron 50.0%
GTGGGCTCAAGAAATGTGGA+AGG - chr1_2:30966707-30966726 Msa0066860:intron 50.0%
AAAGCACACATGGCATACGG+TGG + chr1_2:30966036-30966055 None:intergenic 50.0%
! CAGGTTGACAAAATACCCGG+TGG - chr1_2:30967761-30967780 Msa0066860:intron 50.0%
ATACCCGGTGGAGCAAGATT+AGG - chr1_2:30967773-30967792 Msa0066860:intron 50.0%
TACCCGGTGGAGCAAGATTA+GGG - chr1_2:30967774-30967793 Msa0066860:intron 50.0%
AACCCTAATCTTGCTCCACC+GGG + chr1_2:30967779-30967798 None:intergenic 50.0%
TGTCTGGTCGCTTGGAAAAC+TGG + chr1_2:30967875-30967894 None:intergenic 50.0%
! GTTTTCCAAGCGACCAGACA+TGG - chr1_2:30967875-30967894 Msa0066860:CDS 50.0%
ATCTTTCATGCGCCCATGTC+TGG + chr1_2:30967891-30967910 None:intergenic 50.0%
!! CATGAAAGATAAGGTGCCGC+CGG - chr1_2:30967901-30967920 Msa0066860:CDS 50.0%
!! ATGAAAGATAAGGTGCCGCC+GGG - chr1_2:30967902-30967921 Msa0066860:CDS 50.0%
TGCTTGAGTGTGCAGCTGAG+AGG - chr1_2:30965159-30965178 Msa0066860:three_prime_UTR 55.0%
AGTGTGCAGCTGAGAGGAAC+AGG - chr1_2:30965165-30965184 Msa0066860:three_prime_UTR 55.0%
GCTGAGAAGGCAGAGGAACA+TGG + chr1_2:30965200-30965219 None:intergenic 55.0%
TAGCTTCCCGCGGAAGCTTT+GGG + chr1_2:30965303-30965322 None:intergenic 55.0%
AGACTCCATCGTCGTCAGTG+GGG + chr1_2:30965329-30965348 None:intergenic 55.0%
GAGACTCCATCGTCGTCAGT+GGG + chr1_2:30965330-30965349 None:intergenic 55.0%
AGAGACTCCATCGTCGTCAG+TGG + chr1_2:30965331-30965350 None:intergenic 55.0%
TGACGACGATGGAGTCTCTC+TGG - chr1_2:30965332-30965351 Msa0066860:CDS 55.0%
GACGACGATGGAGTCTCTCT+GGG - chr1_2:30965333-30965352 Msa0066860:CDS 55.0%
TGGGCAAACAGCCTTTGCCA+GGG - chr1_2:30965625-30965644 Msa0066860:intron 55.0%
! AAAGTGGTAGACTGGCTCCC+TGG + chr1_2:30965645-30965664 None:intergenic 55.0%
AGGCGTGGAAAGTGGTAGAC+TGG + chr1_2:30965653-30965672 None:intergenic 55.0%
ACCACTTTCCACGCCTCTCA+AGG - chr1_2:30965657-30965676 Msa0066860:intron 55.0%
! ACCTTGAGAGGCGTGGAAAG+TGG + chr1_2:30965661-30965680 None:intergenic 55.0%
CATCCCGATTGAGGCTGCAT+TGG + chr1_2:30967514-30967533 None:intergenic 55.0%
CAATGCAGCCTCAATCGGGA+TGG - chr1_2:30967512-30967531 Msa0066860:intron 55.0%
CTGGTCGCTTGGAAAACTGG+AGG + chr1_2:30967872-30967891 None:intergenic 55.0%
CTCATGATTCTGGGCTCACC+CGG + chr1_2:30967923-30967942 None:intergenic 55.0%
!! AGGGAGTGCTGAGAAGGCAG+AGG + chr1_2:30965207-30965226 None:intergenic 60.0%
! AAGCACGGGAGAATGGTGGG+TGG + chr1_2:30965250-30965269 None:intergenic 60.0%
GCGAAGCACGGGAGAATGGT+GGG + chr1_2:30965253-30965272 None:intergenic 60.0%
TGCGAAGCACGGGAGAATGG+TGG + chr1_2:30965254-30965273 None:intergenic 60.0%
AAGGAAGCGGCTGCGAAGCA+CGG + chr1_2:30965265-30965284 None:intergenic 60.0%
CAGCCGCTTCCTTCTCACAG+TGG - chr1_2:30965272-30965291 Msa0066860:CDS 60.0%
CCGCCACTGTGAGAAGGAAG+CGG + chr1_2:30965278-30965297 None:intergenic 60.0%
CCGCTTCCTTCTCACAGTGG+CGG - chr1_2:30965275-30965294 Msa0066860:CDS 60.0%
GTAGCTTCCCGCGGAAGCTT+TGG + chr1_2:30965304-30965323 None:intergenic 60.0%
TACAGCCCCACTGACGACGA+TGG - chr1_2:30965321-30965340 Msa0066860:CDS 60.0%
GTGGGCAAACAGCCTTTGCC+AGG - chr1_2:30965624-30965643 Msa0066860:intron 60.0%
! GTAGACTGGCTCCCTGGCAA+AGG + chr1_2:30965639-30965658 None:intergenic 60.0%
GCGGCCAATGCAGCCTCAAT+CGG - chr1_2:30967507-30967526 Msa0066860:intron 60.0%
CGGCCAATGCAGCCTCAATC+GGG - chr1_2:30967508-30967527 Msa0066860:intron 60.0%
ATGATTCTGGGCTCACCCGG+CGG + chr1_2:30967920-30967939 None:intergenic 60.0%
CGGGTGAGCCCAGAATCATG+AGG - chr1_2:30967921-30967940 Msa0066860:CDS 60.0%
GGCTGCGAAGCACGGGAGAA+TGG + chr1_2:30965257-30965276 None:intergenic 65.0%
AGGAAGCGGCTGCGAAGCAC+GGG + chr1_2:30965264-30965283 None:intergenic 65.0%
! TGGGTGCCGCCACTGTGAGA+AGG + chr1_2:30965284-30965303 None:intergenic 65.0%
AGTGGGGCTGTAGCTTCCCG+CGG + chr1_2:30965313-30965332 None:intergenic 65.0%
TGCGCCCATGTCTGGTCGCT+TGG + chr1_2:30967883-30967902 None:intergenic 65.0%
GGCGGCACCCAAAGCTTCCG+CGG - chr1_2:30965293-30965312 Msa0066860:CDS 70.0%
GCGGCACCCAAAGCTTCCGC+GGG - chr1_2:30965294-30965313 Msa0066860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 30964980 30968252 30964980 ID=Msa0066860;Name=Msa0066860
chr1_2 mRNA 30964980 30968252 30964980 ID=Msa0066860-mRNA-1;Parent=Msa0066860;Name=Msa0066860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=140|0.33|0.75|0.75|1|1|4|261|242
chr1_2 exon 30964980 30965468 30964980 ID=Msa0066860-mRNA-1:exon:10308;Parent=Msa0066860-mRNA-1
chr1_2 exon 30966407 30966559 30966407 ID=Msa0066860-mRNA-1:exon:10307;Parent=Msa0066860-mRNA-1
chr1_2 exon 30967554 30967607 30967554 ID=Msa0066860-mRNA-1:exon:10306;Parent=Msa0066860-mRNA-1
chr1_2 exon 30967819 30968252 30967819 ID=Msa0066860-mRNA-1:exon:10305;Parent=Msa0066860-mRNA-1
chr1_2 five_prime_UTR 30968113 30968252 30968113 ID=Msa0066860-mRNA-1:five_prime_utr;Parent=Msa0066860-mRNA-1
chr1_2 CDS 30967819 30968112 30967819 ID=Msa0066860-mRNA-1:cds;Parent=Msa0066860-mRNA-1
chr1_2 CDS 30967554 30967607 30967554 ID=Msa0066860-mRNA-1:cds;Parent=Msa0066860-mRNA-1
chr1_2 CDS 30966407 30966559 30966407 ID=Msa0066860-mRNA-1:cds;Parent=Msa0066860-mRNA-1
chr1_2 CDS 30965241 30965468 30965241 ID=Msa0066860-mRNA-1:cds;Parent=Msa0066860-mRNA-1
chr1_2 three_prime_UTR 30964980 30965240 30964980 ID=Msa0066860-mRNA-1:three_prime_utr;Parent=Msa0066860-mRNA-1
Gene Sequence

>Msa0066860

ATGGCAATGGTAAGTGGTAGTATAAGGCAGCAGAGTTTATGCTTGAGTGTGCAGCTGAGAGGAACAGGACTGAATTCCCATGTTCCTCTGCCTTCTCAGCACTCCCTCATTTCTAATTACCACAATACCACCCACCATTCTCCCGTGCTTCGCAGCCGCTTCCTTCTCACAGTGGCGGCACCCAAAGCTTCCGCGGGAAGCTACAGCCCCACTGACGACGATGGAGTCTCTCTGGGCACCATGAAGCTGCCTGTCAACATAGACCTTCAGAGATTCGATTCCCTGCTCTTTCAGTGGGCAAACAGCCTTTGCCAGGGAGCCAGTCTACCACTTTCCACGCCTCTCAAGTCAGATAAGCCACGCAAGCTTGAAACCAATAAGAGTGGGCTCAAGAAATGTGGAAGGAAAGTTGAAGCTAAAGAAGTTTCTGTTACTGTTAGTCCTACTACAAGTGCTGAAGAAAATATGGATGTTCGGTCCACTGATGATGATTTGATTGAAGTTGACAAAATACCCGGTGGAGCAAGATTAGGGTTTATAGACATTGGGGAAACAGAAGTTCTTGTGTATATTGACTGTTTGGTTTTTAAACCAAATGAAAATTCTCCTCCAGTTTTCCAAGCGACCAGACATGGGCGCATGAAAGATAAGGTGCCGCCGGGTGAGCCCAGAATCATGAGGAGCCTTATGGAAGCTCTTCAGAAGTCAGTTCAGATTGCCTCATTGTGA

Protein sequence

>Msa0066860

MAMVSGSIRQQSLCLSVQLRGTGLNSHVPLPSQHSLISNYHNTTHHSPVLRSRFLLTVAAPKASAGSYSPTDDDGVSLGTMKLPVNIDLQRFDSLLFQWANSLCQGASLPLSTPLKSDKPRKLETNKSGLKKCGRKVEAKEVSVTVSPTTSAEENMDVRSTDDDLIEVDKIPGGARLGFIDIGETEVLVYIDCLVFKPNENSPPVFQATRHGRMKDKVPPGEPRIMRSLMEALQKSVQIASL*