AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1110030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110030 MtrunA17_Chr7g0244441 97.638 127 3 0 23 149 6 132 1.07e-87 251
Msa1110030 MtrunA17_Chr5g0437991 56.863 153 61 2 1 148 25 177 5.82e-51 160
Msa1110030 MtrunA17_Chr3g0106861 47.020 151 73 2 1 144 1 151 7.98e-37 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110030 AT2G40435.1 54.054 148 63 2 1 143 1 148 1.41e-47 151
Msa1110030 AT3G56220.1 51.948 154 68 2 1 148 1 154 2.14e-46 148
Msa1110030 AT2G40435.3 57.600 125 48 2 1 120 1 125 1.03e-42 138
Msa1110030 AT2G40435.2 57.600 125 48 2 1 120 1 125 1.08e-42 138
Msa1110030 AT3G56220.2 54.400 125 52 1 1 120 1 125 3.38e-40 132

Find 60 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACTCTTCTATGTATT+TGG 0.128186 7_3:-54605035 None:intergenic
AGCTTCTGTCTAGTTGATTT+TGG 0.179546 7_3:-54604575 None:intergenic
TTTCATGATTAATGTGCTTT+TGG 0.236031 7_3:+54605338 Msa1110030:CDS
GGTAGGCACCTCATATATTT+TGG 0.249338 7_3:-54607131 None:intergenic
GCATCTTATTATGGATAGTT+TGG 0.280192 7_3:+54607196 Msa1110030:three_prime_UTR
AGAATAACCTAAAAGTTTCT+AGG 0.285112 7_3:-54607527 None:intergenic
TTGTCATCAGCATCTTATTA+TGG 0.300219 7_3:+54607187 Msa1110030:three_prime_UTR
CTGCAAAGCCACCACATATA+TGG 0.302539 7_3:+54604534 Msa1110030:five_prime_UTR
GCCCTTACATAATATTGATA+TGG 0.303015 7_3:+54607163 Msa1110030:three_prime_UTR
GTTGAAAGGCAATAGGTTGA+TGG 0.387582 7_3:-54607578 None:intergenic
CTAGGATGTAACATGTAATA+AGG 0.391510 7_3:-54607509 None:intergenic
AGCCATATCAATATTATGTA+AGG 0.403871 7_3:-54607165 None:intergenic
TGGTATGCTGGTATCAATAC+TGG 0.411863 7_3:+54605374 Msa1110030:CDS
GTGATATGCCCGCTAATGTA+TGG 0.415150 7_3:+54607294 Msa1110030:three_prime_UTR
AAAAGAATATCGTATCTATA+GGG 0.419953 7_3:+54607333 Msa1110030:three_prime_UTR
CAACTCTTCTATGTATTTGG+AGG 0.422808 7_3:-54605032 None:intergenic
ACACCCTTTGTTCTTGCAAA+AGG 0.431451 7_3:-54607437 None:intergenic
ACCCTTTGGTTCCATATATG+TGG 0.438581 7_3:-54604545 None:intergenic
ATCACGGATATTGTTTCACT+TGG 0.443120 7_3:-54607094 None:intergenic
TATTATGGATAGTTTGGAAA+AGG 0.443533 7_3:+54607202 Msa1110030:three_prime_UTR
GAGTGTGAAAACCCTAGAAA+AGG 0.453059 7_3:+54605314 Msa1110030:CDS
GAGGGAATGAACTCTGAGTT+AGG 0.454266 7_3:+54605067 Msa1110030:CDS
CTCCTCCAACAGCTTCTAGC+TGG 0.462141 7_3:-54605458 None:intergenic
AGTATTGATACCAGCATACC+AGG 0.467026 7_3:-54605372 None:intergenic
TGAGTCCTCAACTACTCAAA+TGG 0.469573 7_3:+54605096 Msa1110030:CDS
TTGTGACATCTCGAAGTTGT+TGG 0.472854 7_3:-54604643 None:intergenic
CTCATCCATTTGAGTAGTTG+AGG 0.479517 7_3:-54605101 None:intergenic
AAAGAATAGCCCTGGTATGC+TGG 0.482593 7_3:+54605362 Msa1110030:CDS
ACCATGGGAATATGTTGATA+AGG 0.486547 7_3:-54607461 None:intergenic
GACTTGATGTACTTGATGCT+AGG 0.505174 7_3:+54605415 Msa1110030:CDS
AAATTCTGCCAAAATATATG+AGG 0.508014 7_3:+54607123 Msa1110030:three_prime_UTR
ACTTGATGTACTTGATGCTA+GGG 0.510074 7_3:+54605416 Msa1110030:CDS
CTTTGGTTCCATATATGTGG+TGG 0.513382 7_3:-54604542 None:intergenic
TAGTTTGGAAAAGGAATGAA+TGG 0.527311 7_3:+54607211 Msa1110030:three_prime_UTR
GGAGGCGTCCACAATAATTG+AGG 0.529677 7_3:-54605014 None:intergenic
GGCAGAATTTGATGGAATCA+CGG 0.531542 7_3:-54607110 None:intergenic
ACTTTCCAGCTAGAAGCTGT+TGG 0.533098 7_3:+54605453 Msa1110030:CDS
TGAGGTGCCTACCACTTCAA+TGG 0.538186 7_3:+54607141 Msa1110030:three_prime_UTR
TTCCAGCTAGAAGCTGTTGG+AGG 0.538408 7_3:+54605456 Msa1110030:CDS
TCAAATGGATGAGCAACCTA+TGG 0.542120 7_3:+54605111 Msa1110030:CDS
AGTGTGAAAACCCTAGAAAA+GGG 0.544492 7_3:+54605315 Msa1110030:CDS
CGATATACCCATACATTAGC+GGG 0.547505 7_3:-54607302 None:intergenic
GAACAAAGCCTCAATTATTG+TGG 0.549027 7_3:+54605006 Msa1110030:CDS
GCCTTATCAACATATTCCCA+TGG 0.549449 7_3:+54607460 Msa1110030:three_prime_UTR
TTAAGAGTTCTCTCATGCAA+TGG 0.568468 7_3:-54607401 None:intergenic
GAAGCTATAAGAAGCTAGCA+TGG 0.570317 7_3:+54604592 Msa1110030:exon
TAACATGTAATAAGGTGCAA+TGG 0.571162 7_3:-54607501 None:intergenic
TGATATGCCCGCTAATGTAT+GGG 0.591360 7_3:+54607295 Msa1110030:three_prime_UTR
GCCATATCAATATTATGTAA+GGG 0.592517 7_3:-54607164 None:intergenic
ACCACATATATGGAACCAAA+GGG 0.598008 7_3:+54604544 Msa1110030:five_prime_UTR
CACCACATATATGGAACCAA+AGG 0.611250 7_3:+54604543 Msa1110030:five_prime_UTR
CGATAGTATCAATGCGCAAG+TGG 0.619080 7_3:+54606950 Msa1110030:CDS
TCTTACATACATAGAAACCA+TGG 0.619324 7_3:-54607477 None:intergenic
GTAAGGGCCATTGAAGTGGT+AGG 0.625867 7_3:-54607148 None:intergenic
TTATGTAAGGGCCATTGAAG+TGG 0.626980 7_3:-54607152 None:intergenic
CTCAAGAGATCAAAGAAGAG+TGG 0.631483 7_3:+54604616 Msa1110030:CDS
CTTACATACATAGAAACCAT+GGG 0.650049 7_3:-54607476 None:intergenic
ACGATATACCCATACATTAG+CGG 0.675005 7_3:-54607303 None:intergenic
GTATTGATACCAGCATACCA+GGG 0.698292 7_3:-54605371 None:intergenic
GTTGCAAGCAATCAAGAACA+CGG 0.713497 7_3:+54606986 Msa1110030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTTTTTT+AGG + chr7_3:54605790-54605809 Msa1110030:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTA+GGG + chr7_3:54605791-54605810 Msa1110030:intron 0.0%
!! ATACATAAAAAAAAAAGTTT+AGG + chr7_3:54604749-54604768 Msa1110030:intron 10.0%
!! TACATAAAAAAAAAAGTTTA+GGG + chr7_3:54604750-54604769 Msa1110030:intron 10.0%
!!! GTATTTTATTTTATTTTTGT+AGG + chr7_3:54605290-54605309 Msa1110030:intron 10.0%
!!! TTTAATACTTTGTTTTTTAT+TGG + chr7_3:54606260-54606279 Msa1110030:intron 10.0%
!! CATTTAAATCAAATTATAAA+TGG - chr7_3:54606543-54606562 None:intergenic 10.0%
!! ATATATATATATATATGATG+AGG + chr7_3:54606869-54606888 Msa1110030:intron 10.0%
!! TCCTTTAATTAAATTCAAAT+GGG + chr7_3:54604971-54604990 Msa1110030:intron 15.0%
!!! TTTTTTTTTTTTTTTAGGGA+TGG + chr7_3:54605795-54605814 Msa1110030:intron 15.0%
!! AAATATTTGGTTATACAATT+TGG + chr7_3:54605822-54605841 Msa1110030:intron 15.0%
!! AATATTTGGTTATACAATTT+GGG + chr7_3:54605823-54605842 Msa1110030:intron 15.0%
!!! TAAGTATTTTTCATGAATAT+TGG + chr7_3:54605909-54605928 Msa1110030:intron 15.0%
!!! TCTAATTTTGATTTTTTCTA+AGG + chr7_3:54606642-54606661 Msa1110030:intron 15.0%
!! ATTATCTAGTATATTCACTT+TGG + chr7_3:54604850-54604869 Msa1110030:intron 20.0%
!! TAGTAGAAAATATTGAACTA+TGG + chr7_3:54604945-54604964 Msa1110030:intron 20.0%
!! CATTTGAATTTAATTAAAGG+AGG - chr7_3:54604972-54604991 None:intergenic 20.0%
!! CTCCTTTAATTAAATTCAAA+TGG + chr7_3:54604970-54604989 Msa1110030:intron 20.0%
!! ACCCATTTGAATTTAATTAA+AGG - chr7_3:54604975-54604994 None:intergenic 20.0%
!! ATTAAATTCAAATGGGTAAT+TGG + chr7_3:54604978-54604997 Msa1110030:intron 20.0%
!!! CTCTTCTTTTATATATAACT+TGG + chr7_3:54605155-54605174 Msa1110030:intron 20.0%
!! ATATAAAAATAGAGTACAAG+AGG - chr7_3:54605185-54605204 None:intergenic 20.0%
!! ATAAAGCAATAAAGAGATTA+AGG - chr7_3:54605531-54605550 None:intergenic 20.0%
!! TTAAAACCAATATAAAGAAG+AGG + chr7_3:54605601-54605620 Msa1110030:intron 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG + chr7_3:54606085-54606104 Msa1110030:intron 20.0%
!! TTAATTCAATTTGAGTAAGA+TGG + chr7_3:54606470-54606489 Msa1110030:intron 20.0%
!! TCTACTAACAAACAAAAATT+TGG + chr7_3:54606494-54606513 Msa1110030:intron 20.0%
!! CTACTAACAAACAAAAATTT+GGG + chr7_3:54606495-54606514 Msa1110030:intron 20.0%
!!! ATACCTATTTTTCTTTCATT+CGG + chr7_3:54606681-54606700 Msa1110030:intron 20.0%
!! ATTATTATGTTCTTGTCTAA+AGG + chr7_3:54606768-54606787 Msa1110030:intron 20.0%
!!! AGTAACATTTTGTATTTTAG+TGG + chr7_3:54607263-54607282 Msa1110030:three_prime_UTR 20.0%
!!! GTAACATTTTGTATTTTAGT+GGG + chr7_3:54607264-54607283 Msa1110030:three_prime_UTR 20.0%
!! AAAAAGAATATCGTATCTAT+AGG + chr7_3:54607332-54607351 Msa1110030:three_prime_UTR 20.0%
!! AAAAGAATATCGTATCTATA+GGG + chr7_3:54607333-54607352 Msa1110030:three_prime_UTR 20.0%
!!! TTTATGTGTGAGTTTTTTTG+TGG + chr7_3:54604716-54604735 Msa1110030:intron 25.0%
! TAATAACATTGTGTCTTCAT+TGG - chr7_3:54604893-54604912 None:intergenic 25.0%
!! TTTCATGATTAATGTGCTTT+TGG + chr7_3:54605338-54605357 Msa1110030:CDS 25.0%
! TAAGAACCTCTTCTTTATAT+TGG - chr7_3:54605610-54605629 None:intergenic 25.0%
! GTGAGTGTATATATATGTTA+AGG + chr7_3:54605649-54605668 Msa1110030:intron 25.0%
!! TGAGAAAATCTTAATGCTTT+TGG + chr7_3:54605703-54605722 Msa1110030:intron 25.0%
!! AAAGGAGTATATAATTCCAT+CGG + chr7_3:54605731-54605750 Msa1110030:intron 25.0%
! TTCAATATTTATATACCCGA+TGG - chr7_3:54605750-54605769 None:intergenic 25.0%
! AATATTGAAGAAGTCTTTCA+TGG + chr7_3:54605761-54605780 Msa1110030:intron 25.0%
! TTATTATCAGTCATTTCAAG+TGG - chr7_3:54605972-54605991 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr7_3:54606184-54606203 None:intergenic 25.0%
!! ATGTATCTAGTTTATAAACG+TGG - chr7_3:54606136-54606155 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr7_3:54606184-54606203 Msa1110030:intron 25.0%
! ATTCCGAATGAAAGAAAAAT+AGG - chr7_3:54606687-54606706 None:intergenic 25.0%
!!! TTATTTTATGCAGAGTCATA+AGG + chr7_3:54606926-54606945 Msa1110030:intron 25.0%
!!! TATATTTTGGCAGAATTTGA+TGG - chr7_3:54607121-54607140 None:intergenic 25.0%
! AAATTCTGCCAAAATATATG+AGG + chr7_3:54607123-54607142 Msa1110030:three_prime_UTR 25.0%
! GCCATATCAATATTATGTAA+GGG - chr7_3:54607167-54607186 None:intergenic 25.0%
! AGCCATATCAATATTATGTA+AGG - chr7_3:54607168-54607187 None:intergenic 25.0%
! TATTATGGATAGTTTGGAAA+AGG + chr7_3:54607202-54607221 Msa1110030:three_prime_UTR 25.0%
!! ATTTTACAAGTTTCAAGCTA+TGG + chr7_3:54607239-54607258 Msa1110030:three_prime_UTR 25.0%
! AGAATAACCTAAAAGTTTCT+AGG - chr7_3:54607530-54607549 None:intergenic 25.0%
AAATATTGAGCTCTTCGTTT+AGG - chr7_3:54604815-54604834 None:intergenic 30.0%
CTTCAACTCTTCTATGTATT+TGG - chr7_3:54605038-54605057 None:intergenic 30.0%
ATCTAAATACGCAAAAGATG+TGG - chr7_3:54605251-54605270 None:intergenic 30.0%
! AATCATGAAACCCTTTTCTA+GGG - chr7_3:54605328-54605347 None:intergenic 30.0%
! TAATCATGAAACCCTTTTCT+AGG - chr7_3:54605329-54605348 None:intergenic 30.0%
! AAGGAGTATATAATTCCATC+GGG + chr7_3:54605732-54605751 Msa1110030:intron 30.0%
AGTGTTATATATACTCCTCT+TGG - chr7_3:54606224-54606243 None:intergenic 30.0%
!! GTTGGCTAGTTTATTATACA+AGG - chr7_3:54606724-54606743 None:intergenic 30.0%
! AACAAGACAAAAAAGTGTAC+TGG - chr7_3:54607045-54607064 None:intergenic 30.0%
GCCCTTACATAATATTGATA+TGG + chr7_3:54607163-54607182 Msa1110030:three_prime_UTR 30.0%
TTGTCATCAGCATCTTATTA+TGG + chr7_3:54607187-54607206 Msa1110030:three_prime_UTR 30.0%
GCATCTTATTATGGATAGTT+TGG + chr7_3:54607196-54607215 Msa1110030:three_prime_UTR 30.0%
TAGTTTGGAAAAGGAATGAA+TGG + chr7_3:54607211-54607230 Msa1110030:three_prime_UTR 30.0%
!!! ACATTTTGTATTTTAGTGGG+TGG + chr7_3:54607267-54607286 Msa1110030:three_prime_UTR 30.0%
!!! CATTTTGTATTTTAGTGGGT+GGG + chr7_3:54607268-54607287 Msa1110030:three_prime_UTR 30.0%
!!! ATTTTGTATTTTAGTGGGTG+GGG + chr7_3:54607269-54607288 Msa1110030:three_prime_UTR 30.0%
CTTACATACATAGAAACCAT+GGG - chr7_3:54607479-54607498 None:intergenic 30.0%
TCTTACATACATAGAAACCA+TGG - chr7_3:54607480-54607499 None:intergenic 30.0%
TAACATGTAATAAGGTGCAA+TGG - chr7_3:54607504-54607523 None:intergenic 30.0%
CTAGGATGTAACATGTAATA+AGG - chr7_3:54607512-54607531 None:intergenic 30.0%
! GTTACATCCTAGAAACTTTT+AGG + chr7_3:54607520-54607539 Msa1110030:three_prime_UTR 30.0%
ACCACATATATGGAACCAAA+GGG + chr7_3:54604544-54604563 Msa1110030:five_prime_UTR 35.0%
!!! ATTTTGGTTTTCTCACCCTT+TGG - chr7_3:54604562-54604581 None:intergenic 35.0%
!! AGCTTCTGTCTAGTTGATTT+TGG - chr7_3:54604578-54604597 None:intergenic 35.0%
ATATTCCAACCCAATAAAGG+AGG + chr7_3:54604773-54604792 Msa1110030:intron 35.0%
! TCTTCGTTTAGGTTATATGC+TGG - chr7_3:54604804-54604823 None:intergenic 35.0%
GAACAAAGCCTCAATTATTG+TGG + chr7_3:54605006-54605025 Msa1110030:CDS 35.0%
CAACTCTTCTATGTATTTGG+AGG - chr7_3:54605035-54605054 None:intergenic 35.0%
AGAAGAGTTGAAGCAAAAAG+TGG + chr7_3:54605045-54605064 Msa1110030:CDS 35.0%
! GAGAAATAGAGTACTACCAT+AGG - chr7_3:54605130-54605149 None:intergenic 35.0%
AGTGTGAAAACCCTAGAAAA+GGG + chr7_3:54605315-54605334 Msa1110030:CDS 35.0%
ACTTGATGTACTTGATGCTA+GGG + chr7_3:54605416-54605435 Msa1110030:CDS 35.0%
!!! TTAATGCTTTTGGAGCTCAA+AGG + chr7_3:54605713-54605732 Msa1110030:intron 35.0%
TAGGGATGGTCACAAATATT+TGG + chr7_3:54605809-54605828 Msa1110030:intron 35.0%
! TGGGAAAAGGGTATACTAAT+GGG - chr7_3:54605939-54605958 None:intergenic 35.0%
! ATGGGAAAAGGGTATACTAA+TGG - chr7_3:54605940-54605959 None:intergenic 35.0%
! ATTAGTATACCCTTTTCCCA+TGG + chr7_3:54605939-54605958 Msa1110030:intron 35.0%
GTTAAAGTATATACTCCCTC+CGG + chr7_3:54606053-54606072 Msa1110030:intron 35.0%
! CAAGTAATCACGTGAGTTTT+AGG - chr7_3:54606449-54606468 None:intergenic 35.0%
! ATGCAAGCTCTTTCTTTTGT+TGG - chr7_3:54606742-54606761 None:intergenic 35.0%
TCAACAAGAATCACATGAGA+GGG - chr7_3:54606903-54606922 None:intergenic 35.0%
TTCAACAAGAATCACATGAG+AGG - chr7_3:54606904-54606923 None:intergenic 35.0%
ATCACGGATATTGTTTCACT+TGG - chr7_3:54607097-54607116 None:intergenic 35.0%
ACGATATACCCATACATTAG+CGG - chr7_3:54607306-54607325 None:intergenic 35.0%
TTAAGAGTTCTCTCATGCAA+TGG - chr7_3:54607404-54607423 None:intergenic 35.0%
! TTGTCCTTTTGCAAGAACAA+AGG + chr7_3:54607433-54607452 Msa1110030:three_prime_UTR 35.0%
! TGTCCTTTTGCAAGAACAAA+GGG + chr7_3:54607434-54607453 Msa1110030:three_prime_UTR 35.0%
ACCATGGGAATATGTTGATA+AGG - chr7_3:54607464-54607483 None:intergenic 35.0%
! CTTTGGTTCCATATATGTGG+TGG - chr7_3:54604545-54604564 None:intergenic 40.0%
CACCACATATATGGAACCAA+AGG + chr7_3:54604543-54604562 Msa1110030:five_prime_UTR 40.0%
! ACCCTTTGGTTCCATATATG+TGG - chr7_3:54604548-54604567 None:intergenic 40.0%
GAAGCTATAAGAAGCTAGCA+TGG + chr7_3:54604592-54604611 Msa1110030:exon 40.0%
CTCAAGAGATCAAAGAAGAG+TGG + chr7_3:54604616-54604635 Msa1110030:CDS 40.0%
TTGTGACATCTCGAAGTTGT+TGG - chr7_3:54604646-54604665 None:intergenic 40.0%
ACAAGCTCAACTGCTGTAAT+TGG + chr7_3:54604662-54604681 Msa1110030:intron 40.0%
GGGATATTCCAACCCAATAA+AGG + chr7_3:54604770-54604789 Msa1110030:intron 40.0%
AGAGTTGAAGCAAAAAGTGG+AGG + chr7_3:54605048-54605067 Msa1110030:CDS 40.0%
GAGTTGAAGCAAAAAGTGGA+GGG + chr7_3:54605049-54605068 Msa1110030:CDS 40.0%
TGAGTCCTCAACTACTCAAA+TGG + chr7_3:54605096-54605115 Msa1110030:CDS 40.0%
CTCATCCATTTGAGTAGTTG+AGG - chr7_3:54605104-54605123 None:intergenic 40.0%
TCAAATGGATGAGCAACCTA+TGG + chr7_3:54605111-54605130 Msa1110030:CDS 40.0%
GAGTGTGAAAACCCTAGAAA+AGG + chr7_3:54605314-54605333 Msa1110030:CDS 40.0%
!! CTTTTGGAAAAGAATAGCCC+TGG + chr7_3:54605354-54605373 Msa1110030:CDS 40.0%
! GTATTGATACCAGCATACCA+GGG - chr7_3:54605374-54605393 None:intergenic 40.0%
!! AGTATTGATACCAGCATACC+AGG - chr7_3:54605375-54605394 None:intergenic 40.0%
TGGTATGCTGGTATCAATAC+TGG + chr7_3:54605374-54605393 Msa1110030:CDS 40.0%
!! ACTGGAAGCTTTTGAAGATC+TGG + chr7_3:54605392-54605411 Msa1110030:CDS 40.0%
!! CTGGAAGCTTTTGAAGATCT+GGG + chr7_3:54605393-54605412 Msa1110030:CDS 40.0%
GACTTGATGTACTTGATGCT+AGG + chr7_3:54605415-54605434 Msa1110030:CDS 40.0%
!! GTGTGAGCGTTGTACAATTT+TGG + chr7_3:54605680-54605699 Msa1110030:intron 40.0%
! TTCAAGTGGTTTGTCACCAT+GGG - chr7_3:54605958-54605977 None:intergenic 40.0%
! TTTCAAGTGGTTTGTCACCA+TGG - chr7_3:54605959-54605978 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr7_3:54606188-54606207 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr7_3:54606187-54606206 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr7_3:54606187-54606206 Msa1110030:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr7_3:54606188-54606207 Msa1110030:intron 40.0%
AATCACATGAGAGGGGAATT+TGG - chr7_3:54606895-54606914 None:intergenic 40.0%
CAACAAGAATCACATGAGAG+GGG - chr7_3:54606902-54606921 None:intergenic 40.0%
GTTGCAAGCAATCAAGAACA+CGG + chr7_3:54606986-54607005 Msa1110030:CDS 40.0%
GGCAGAATTTGATGGAATCA+CGG - chr7_3:54607113-54607132 None:intergenic 40.0%
! GGTAGGCACCTCATATATTT+TGG - chr7_3:54607134-54607153 None:intergenic 40.0%
TTATGTAAGGGCCATTGAAG+TGG - chr7_3:54607155-54607174 None:intergenic 40.0%
TGATATGCCCGCTAATGTAT+GGG + chr7_3:54607295-54607314 Msa1110030:three_prime_UTR 40.0%
CGATATACCCATACATTAGC+GGG - chr7_3:54607305-54607324 None:intergenic 40.0%
ACACCCTTTGTTCTTGCAAA+AGG - chr7_3:54607440-54607459 None:intergenic 40.0%
GCCTTATCAACATATTCCCA+TGG + chr7_3:54607460-54607479 Msa1110030:three_prime_UTR 40.0%
CTGCAAAGCCACCACATATA+TGG + chr7_3:54604534-54604553 Msa1110030:five_prime_UTR 45.0%
CTTCTCCTCCTTTATTGGGT+TGG - chr7_3:54604781-54604800 None:intergenic 45.0%
CTGGCTTCTCCTCCTTTATT+GGG - chr7_3:54604785-54604804 None:intergenic 45.0%
GAGGGAATGAACTCTGAGTT+AGG + chr7_3:54605067-54605086 Msa1110030:CDS 45.0%
AAAGAATAGCCCTGGTATGC+TGG + chr7_3:54605362-54605381 Msa1110030:CDS 45.0%
ACTTTCCAGCTAGAAGCTGT+TGG + chr7_3:54605453-54605472 Msa1110030:CDS 45.0%
GGTTTGTCACCATGGGAAAA+GGG - chr7_3:54605951-54605970 None:intergenic 45.0%
! TGGTTTGTCACCATGGGAAA+AGG - chr7_3:54605952-54605971 None:intergenic 45.0%
CTTGGTAAGTATACTCCCTC+CGG - chr7_3:54606206-54606225 None:intergenic 45.0%
! GAGGGAGTATACTTACCAAG+AGG + chr7_3:54606206-54606225 Msa1110030:intron 45.0%
!!! CGTGAGTTTTAGGTGCTCAA+GGG - chr7_3:54606439-54606458 None:intergenic 45.0%
!!! ACGTGAGTTTTAGGTGCTCA+AGG - chr7_3:54606440-54606459 None:intergenic 45.0%
CGATAGTATCAATGCGCAAG+TGG + chr7_3:54606950-54606969 Msa1110030:CDS 45.0%
GTGATATGCCCGCTAATGTA+TGG + chr7_3:54607294-54607313 Msa1110030:three_prime_UTR 45.0%
!! AATAAATAAAATTTAAAAAG+AGG - chr7_3:54606405-54606424 None:intergenic 5.0%
!!! TCTTTTTAAATTTTATTTAT+TGG + chr7_3:54606404-54606423 Msa1110030:intron 5.0%
! GCTGGCTTCTCCTCCTTTAT+TGG - chr7_3:54604786-54604805 None:intergenic 50.0%
!! GGAGGCGTCCACAATAATTG+AGG - chr7_3:54605017-54605036 None:intergenic 50.0%
TTCCAGCTAGAAGCTGTTGG+AGG + chr7_3:54605456-54605475 Msa1110030:CDS 50.0%
! TGAGGTGCCTACCACTTCAA+TGG + chr7_3:54607141-54607160 Msa1110030:three_prime_UTR 50.0%
GTAAGGGCCATTGAAGTGGT+AGG - chr7_3:54607151-54607170 None:intergenic 50.0%
CTCCTCCAACAGCTTCTAGC+TGG - chr7_3:54605461-54605480 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 54604521 54607586 54604521 ID=Msa1110030;Name=Msa1110030
chr7_3 mRNA 54604521 54607586 54604521 ID=Msa1110030-mRNA-1;Parent=Msa1110030;Name=Msa1110030-mRNA-1;_AED=0.11;_eAED=0.11;_QI=90|1|1|1|0.33|0.5|4|564|149
chr7_3 exon 54604521 54604676 54604521 ID=Msa1110030-mRNA-1:exon:11501;Parent=Msa1110030-mRNA-1
chr7_3 exon 54605004 54605132 54605004 ID=Msa1110030-mRNA-1:exon:11502;Parent=Msa1110030-mRNA-1
chr7_3 exon 54605312 54605482 54605312 ID=Msa1110030-mRNA-1:exon:11503;Parent=Msa1110030-mRNA-1
chr7_3 exon 54606939 54607586 54606939 ID=Msa1110030-mRNA-1:exon:11504;Parent=Msa1110030-mRNA-1
chr7_3 five_prime_UTR 54604521 54604610 54604521 ID=Msa1110030-mRNA-1:five_prime_utr;Parent=Msa1110030-mRNA-1
chr7_3 CDS 54604611 54604676 54604611 ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3 CDS 54605004 54605132 54605004 ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3 CDS 54605312 54605482 54605312 ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3 CDS 54606939 54607022 54606939 ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3 three_prime_UTR 54607023 54607586 54607023 ID=Msa1110030-mRNA-1:three_prime_utr;Parent=Msa1110030-mRNA-1
Gene Sequence

>Msa1110030

ATGGACTCAAGAGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGACGCCTCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAACTACTCAAATGGATGAGCAACCTATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCATGATTAATGTGCTTTTGGAAAAGAATAGCCCTGGTATGCTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTTGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1110030

MDSRDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSTTQMDEQPMVSVKTLEKGFMINVLLEKNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*