AlfalfaGEDB | Msa1110030

M. sativa cultivar zhongmu-4 / Msa1110030

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110030	XP_024626508.1	97.638	127	3	0	23	149	1	127	1.03e-83	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110030	G7KX21	97.638	127	3	0	23	149	6	132	5.55e-84	251

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1110030	0.806939	6.446082e-50	-8.615850e-47
Msa0003340	Msa1110030	0.819470	1.142318e-52	-8.615850e-47
Msa0005500	Msa1110030	0.835539	1.582133e-56	-8.615850e-47
Msa0005630	Msa1110030	0.801557	8.514210e-49	-8.615850e-47
Msa0009210	Msa1110030	0.803138	4.022139e-49	-8.615850e-47
Msa0014960	Msa1110030	0.801027	1.092576e-48	-8.615850e-47
Msa0016830	Msa1110030	0.871452	6.761886e-67	-8.615850e-47
Msa0021570	Msa1110030	0.812365	4.397174e-51	-8.615850e-47
Msa0021710	Msa1110030	0.813125	2.998441e-51	-8.615850e-47
Msa0026120	Msa1110030	0.811108	8.254365e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110030	MtrunA17_Chr7g0244441	97.638	127	3	0	23	149	6	132	1.07e-87	251
Msa1110030	MtrunA17_Chr5g0437991	56.863	153	61	2	1	148	25	177	5.82e-51	160
Msa1110030	MtrunA17_Chr3g0106861	47.020	151	73	2	1	144	1	151	7.98e-37	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110030	AT2G40435.1	54.054	148	63	2	1	143	1	148	1.41e-47	151
Msa1110030	AT3G56220.1	51.948	154	68	2	1	148	1	154	2.14e-46	148
Msa1110030	AT2G40435.3	57.600	125	48	2	1	120	1	125	1.03e-42	138
Msa1110030	AT2G40435.2	57.600	125	48	2	1	120	1	125	1.08e-42	138
Msa1110030	AT3G56220.2	54.400	125	52	1	1	120	1	125	3.38e-40	132

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Find 60 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATATCGTATCTATA+GGG	0.419953	7_3:+54607333	Msa1110030:three_prime_UTR
AAAGAATAGCCCTGGTATGC+TGG	0.482593	7_3:+54605362	Msa1110030:CDS
AAATTCTGCCAAAATATATG+AGG	0.508014	7_3:+54607123	Msa1110030:three_prime_UTR
ACACCCTTTGTTCTTGCAAA+AGG	0.431451	7_3:-54607437	None:intergenic
ACCACATATATGGAACCAAA+GGG	0.598008	7_3:+54604544	Msa1110030:five_prime_UTR
ACCATGGGAATATGTTGATA+AGG	0.486547	7_3:-54607461	None:intergenic
ACCCTTTGGTTCCATATATG+TGG	0.438581	7_3:-54604545	None:intergenic
ACGATATACCCATACATTAG+CGG	0.675005	7_3:-54607303	None:intergenic
ACTTGATGTACTTGATGCTA+GGG	0.510074	7_3:+54605416	Msa1110030:CDS
ACTTTCCAGCTAGAAGCTGT+TGG	0.533098	7_3:+54605453	Msa1110030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGAGCTCTTCGTTT+AGG	-	chr7_3:54604815-54604834	None:intergenic	30.0%
CTTCAACTCTTCTATGTATT+TGG	-	chr7_3:54605038-54605057	None:intergenic	30.0%
ATCTAAATACGCAAAAGATG+TGG	-	chr7_3:54605251-54605270	None:intergenic	30.0%
AGTGTTATATATACTCCTCT+TGG	-	chr7_3:54606224-54606243	None:intergenic	30.0%
GCCCTTACATAATATTGATA+TGG	+	chr7_3:54607163-54607182	Msa1110030:three_prime_UTR	30.0%
TTGTCATCAGCATCTTATTA+TGG	+	chr7_3:54607187-54607206	Msa1110030:three_prime_UTR	30.0%
GCATCTTATTATGGATAGTT+TGG	+	chr7_3:54607196-54607215	Msa1110030:three_prime_UTR	30.0%
TAGTTTGGAAAAGGAATGAA+TGG	+	chr7_3:54607211-54607230	Msa1110030:three_prime_UTR	30.0%
CTTACATACATAGAAACCAT+GGG	-	chr7_3:54607479-54607498	None:intergenic	30.0%
TCTTACATACATAGAAACCA+TGG	-	chr7_3:54607480-54607499	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	54604521	54607586	54604521	ID=Msa1110030;Name=Msa1110030
chr7_3	mRNA	54604521	54607586	54604521	ID=Msa1110030-mRNA-1;Parent=Msa1110030;Name=Msa1110030-mRNA-1;_AED=0.11;_eAED=0.11;_QI=90\|1\|1\|1\|0.33\|0.5\|4\|564\|149
chr7_3	exon	54604521	54604676	54604521	ID=Msa1110030-mRNA-1:exon:11501;Parent=Msa1110030-mRNA-1
chr7_3	exon	54605004	54605132	54605004	ID=Msa1110030-mRNA-1:exon:11502;Parent=Msa1110030-mRNA-1
chr7_3	exon	54605312	54605482	54605312	ID=Msa1110030-mRNA-1:exon:11503;Parent=Msa1110030-mRNA-1
chr7_3	exon	54606939	54607586	54606939	ID=Msa1110030-mRNA-1:exon:11504;Parent=Msa1110030-mRNA-1
chr7_3	five_prime_UTR	54604521	54604610	54604521	ID=Msa1110030-mRNA-1:five_prime_utr;Parent=Msa1110030-mRNA-1
chr7_3	CDS	54604611	54604676	54604611	ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3	CDS	54605004	54605132	54605004	ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3	CDS	54605312	54605482	54605312	ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3	CDS	54606939	54607022	54606939	ID=Msa1110030-mRNA-1:cds;Parent=Msa1110030-mRNA-1
chr7_3	three_prime_UTR	54607023	54607586	54607023	ID=Msa1110030-mRNA-1:three_prime_utr;Parent=Msa1110030-mRNA-1

Gene Sequence

>Msa1110030

ATGGACTCAAGAGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGACGCCTCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAACTACTCAAATGGATGAGCAACCTATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCATGATTAATGTGCTTTTGGAAAAGAATAGCCCTGGTATGCTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTTGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1110030

MDSRDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSTTQMDEQPMVSVKTLEKGFMINVLLEKNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*