AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1290450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290450 MtrunA17_Chr8g0364621 79.149 235 2 1 1 235 1 188 6.51e-130 364
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290450 AT1G24050.1 52.663 169 78 1 9 175 10 178 6.21e-59 184
Msa1290450 AT1G70220.2 39.375 160 90 3 16 173 18 172 3.28e-35 124
Msa1290450 AT1G70220.1 32.000 200 89 4 16 173 18 212 5.29e-28 106

Find 88 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGAGTTGTTTGAGAGTT+AGG 0.219113 8_3:-45163703 None:intergenic
ACAAAATTTGCATCCTATAA+TGG 0.232664 8_3:-45164145 Msa1290450:three_prime_UTR
TTCATTATTTCTAAACCTTT+TGG 0.268438 8_3:-45164040 Msa1290450:three_prime_UTR
ATATTAATGCTCTTCAATCT+AGG 0.278261 8_3:-45169101 Msa1290450:CDS
TTTATTTCTAAAACCTTGTT+TGG 0.286288 8_3:-45163965 Msa1290450:three_prime_UTR
GTTTCTTTCTCAACCATTAT+AGG 0.300046 8_3:+45164132 None:intergenic
TCATCTTATCTTTACTTTGT+AGG 0.306239 8_3:-45163896 Msa1290450:three_prime_UTR
AGGTTGCAACTTCGCGGTTC+TGG 0.309308 8_3:-45164182 Msa1290450:CDS
AAGCAGATGCTGAGAGGATT+GGG 0.337218 8_3:-45168576 Msa1290450:CDS
CTAGGGAAGAACTTGCAATT+AGG 0.346293 8_3:-45169083 Msa1290450:intron
GTCTTGACCTTGACCTAAAA+AGG 0.356451 8_3:+45169152 None:intergenic
GGTAAATATGGCAATATCAT+TGG 0.373667 8_3:+45163939 None:intergenic
ATATCAAGAAGACAATGATT+TGG 0.380534 8_3:+45169120 None:intergenic
ATGGTCCTCGTCGAAATATT+AGG 0.388314 8_3:-45169206 Msa1290450:CDS
ATTTCGACGAGGACCATGTT+TGG 0.400312 8_3:+45169212 None:intergenic
ATCACACATTCAGAGTTATA+AGG 0.407712 8_3:+45165100 None:intergenic
ATCACACATTCAGAGTTATA+AGG 0.407712 8_3:+45166130 None:intergenic
AAACGAGTCCTCGTCTGATC+TGG 0.413393 8_3:+45163799 None:intergenic
ATGTAGCACTGTGGTAAATA+TGG 0.435349 8_3:+45163927 None:intergenic
TGGGTTGTTTCCTTTCGATC+AGG 0.445262 8_3:-45169314 Msa1290450:CDS
CTTTCGATCAGGACAACGTT+AGG 0.448519 8_3:-45169303 Msa1290450:CDS
AACAAAACTCAAGAGCTTCA+AGG 0.453667 8_3:+45164065 None:intergenic
TATAACTCTGAATGTGTGAT+TGG 0.454306 8_3:-45165097 Msa1290450:CDS
TATAACTCTGAATGTGTGAT+TGG 0.454306 8_3:-45166127 Msa1290450:CDS
GTACTCCTGCTGCAAATGAC+CGG 0.458691 8_3:-45165072 Msa1290450:CDS
GTACTCCTGCTGCAAATGAC+CGG 0.458691 8_3:-45166102 Msa1290450:CDS
GAAGCAGATGCTGAGAGGAT+TGG 0.459586 8_3:-45168577 Msa1290450:CDS
AAAATAAAATATGTCAAAGT+GGG 0.464616 8_3:+45163986 None:intergenic
GTAAATATGGCAATATCATT+GGG 0.466403 8_3:+45163940 None:intergenic
TTCACCCGGTCATTTGCAGC+AGG 0.469515 8_3:+45165067 None:intergenic
TTCACCCGGTCATTTGCAGC+AGG 0.469515 8_3:+45166097 None:intergenic
TTGTTACTTCTGCTGTGTTG+TGG 0.470591 8_3:+45169417 None:intergenic
GAAGTTCAGTCGCATACAAC+GGG 0.473023 8_3:+45163829 None:intergenic
ACGGTCTTGTCCCAGCGGAC+TGG 0.473797 8_3:+45165157 None:intergenic
ACGGTCTTGTCCCAGCGGAC+TGG 0.473797 8_3:+45166187 None:intergenic
TAACCAGGCTTCCAGTCCGC+TGG 0.482831 8_3:-45165168 Msa1290450:intron
TAACCAGGCTTCCAGTCCGC+TGG 0.482831 8_3:-45166198 Msa1290450:intron
AGCTTGAGTTCGAGAGGAAG+AGG 0.489751 8_3:-45164202 Msa1290450:CDS
TATTAATGCTCTTCAATCTA+GGG 0.522635 8_3:-45169100 Msa1290450:CDS
AGACAATGATTTGGATCAAG+TGG 0.531826 8_3:+45169129 None:intergenic
TTCTTGAAGTACGAGGTAGT+TGG 0.533051 8_3:+45169239 None:intergenic
TCTTATCTTTACTTTGTAGG+AGG 0.533264 8_3:-45163893 Msa1290450:three_prime_UTR
ATATCATTGGGTTCCAAACA+AGG 0.538329 8_3:+45163952 None:intergenic
CAGTCAAAACAAACAAAAGA+TGG 0.540414 8_3:-45169391 Msa1290450:exon
TTGCAACTTCGCGGTTCTGG+TGG 0.543621 8_3:-45164179 Msa1290450:CDS
CTTCAAGAAGGTTCCAAACA+TGG 0.547671 8_3:-45169225 Msa1290450:CDS
ACGTTAGGTGATGAATTTGA+AGG 0.547826 8_3:-45169288 Msa1290450:CDS
CGAGTCCTCGTCTGATCTGG+AGG 0.561765 8_3:+45163802 None:intergenic
CAACAACGGAGATGAGTTTG+CGG 0.565519 8_3:-45169337 Msa1290450:CDS
AACCAGGCTTCCAGTCCGCT+GGG 0.567736 8_3:-45165167 Msa1290450:intron
AACCAGGCTTCCAGTCCGCT+GGG 0.567736 8_3:-45166197 Msa1290450:intron
TACTCCTGCTGCAAATGACC+GGG 0.571626 8_3:-45165071 Msa1290450:CDS
TACTCCTGCTGCAAATGACC+GGG 0.571626 8_3:-45166101 Msa1290450:CDS
GAGTAAATAATATCACCAAA+AGG 0.576800 8_3:+45164025 None:intergenic
AGGAAGAGGTTGCAACTTCG+CGG 0.577772 8_3:-45164188 Msa1290450:CDS
ATGGCGATGACGATGGAAAG+TGG 0.583221 8_3:-45169372 Msa1290450:CDS
AACTACCTCGTACTTCAAGA+AGG 0.584328 8_3:-45169237 Msa1290450:CDS
CTAACGTTGTCCTGATCGAA+AGG 0.584661 8_3:+45169304 None:intergenic
AAATGACCGGGTGAAGAAAG+TGG 0.589657 8_3:-45165059 Msa1290450:intron
AAATGACCGGGTGAAGAAAG+TGG 0.589657 8_3:-45166089 Msa1290450:CDS
AACGGAGATGAGTTTGCGGT+GGG 0.594074 8_3:-45169333 Msa1290450:CDS
CAACGGAGATGAGTTTGCGG+TGG 0.594238 8_3:-45169334 Msa1290450:CDS
TGTTTACCACTTTCTTCACC+CGG 0.594575 8_3:+45165053 None:intergenic
TGTTTACCACTTTCTTCACC+CGG 0.594575 8_3:+45166083 None:intergenic
GTCCTCGTCTGATCTGGAGG+AGG 0.600456 8_3:+45163805 None:intergenic
ACAAAAGATGGCGATGACGA+TGG 0.605340 8_3:-45169379 Msa1290450:exon
CTCATTCATCACAACTATGA+CGG 0.607600 8_3:+45165138 None:intergenic
CTCATTCATCACAACTATGA+CGG 0.607600 8_3:+45166168 None:intergenic
AACTCTGAATGTGTGATTGG+TGG 0.608031 8_3:-45165094 Msa1290450:CDS
AACTCTGAATGTGTGATTGG+TGG 0.608031 8_3:-45166124 Msa1290450:CDS
GTAGTTGGAATCACGATCAA+AGG 0.617773 8_3:+45169254 None:intergenic
GACAATGATTTGGATCAAGT+GGG 0.620371 8_3:+45169130 None:intergenic
GTAAAGATAAGATGAATGAG+TGG 0.621976 8_3:+45163904 None:intergenic
TGAAGTTCAGTCGCATACAA+CGG 0.624744 8_3:+45163828 None:intergenic
CACCTCCTCCAGATCAGACG+AGG 0.636315 8_3:-45163807 Msa1290450:three_prime_UTR
TGGTTGAGAAAGAAACTCCA+AGG 0.644959 8_3:-45164125 Msa1290450:three_prime_UTR
AAATAAAATATGTCAAAGTG+GGG 0.649897 8_3:+45163987 None:intergenic
GGCAGCAGCAACAACAACAA+CGG 0.651119 8_3:-45169351 Msa1290450:CDS
AAGCTGAAGCAGATGCTGAG+AGG 0.660269 8_3:-45168582 Msa1290450:CDS
CTATGACGGTCTTGTCCCAG+CGG 0.667590 8_3:+45165152 None:intergenic
CTATGACGGTCTTGTCCCAG+CGG 0.667590 8_3:+45166182 None:intergenic
CGTCATAGTTGTGATGAATG+AGG 0.676789 8_3:-45165137 Msa1290450:CDS
CGTCATAGTTGTGATGAATG+AGG 0.676789 8_3:-45166167 Msa1290450:CDS
AGCAGATGCTGAGAGGATTG+GGG 0.676816 8_3:-45168575 Msa1290450:CDS
GATGCTGAGAGGATTGGGGT+TGG 0.677325 8_3:-45168571 Msa1290450:CDS
TGGAACCTTCTTGAAGTACG+AGG 0.696402 8_3:+45169232 None:intergenic
AAAAGCCTAATATTTCGACG+AGG 0.729946 8_3:+45169201 None:intergenic
AATGAGTGGATGTAGCACTG+TGG 0.840320 8_3:+45163918 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTAAATTTTTATTGA+TGG - chr8_3:45164147-45164166 Msa1290450:three_prime_UTR 10.0%
!!! GTTATTAAATAGAATATTTT+TGG - chr8_3:45164819-45164838 Msa1290450:intron 10.0%
!!! CAATAAAATAAAGAATTTTT+CGG + chr8_3:45165818-45165837 None:intergenic 10.0%
!! CAAATAAAACATAAATTAAA+AGG + chr8_3:45166759-45166778 None:intergenic 10.0%
!! TTAATACAAAACAAATTTAT+AGG + chr8_3:45167136-45167155 None:intergenic 10.0%
!! CAAATAAAACATAAATTAAA+AGG + chr8_3:45166759-45166778 None:intergenic 10.0%
!! TTAATACAAAACAAATTTAT+AGG + chr8_3:45167136-45167155 None:intergenic 10.0%
!!! ATGATTATTTTGTTTAGATT+TGG - chr8_3:45164280-45164299 Msa1290450:intron 15.0%
!!! ATTTAAAGTGATTTTTGTTT+TGG - chr8_3:45164537-45164556 Msa1290450:intron 15.0%
!!! TTTAAAGTGATTTTTGTTTT+GGG - chr8_3:45164538-45164557 Msa1290450:intron 15.0%
!! TAGATATTAAAAGATGAAAT+GGG + chr8_3:45164854-45164873 None:intergenic 15.0%
!! ATAGATATTAAAAGATGAAA+TGG + chr8_3:45164855-45164874 None:intergenic 15.0%
!! AATAAAAAATTGTCACATAA+CGG + chr8_3:45165502-45165521 None:intergenic 15.0%
!!! TTGTTGAACATTTTATTTTA+TGG - chr8_3:45165702-45165721 Msa1290450:intron 15.0%
!!! GTTAAGTGAATTTTAATTTT+TGG - chr8_3:45165746-45165765 Msa1290450:intron 15.0%
!! TAGTTTCTAACTTAAATAAT+AGG - chr8_3:45165859-45165878 Msa1290450:intron 15.0%
!!! TTTTTATCTAAAACAAGTTT+TGG - chr8_3:45165898-45165917 Msa1290450:intron 15.0%
!!! GTTATTGAATAGAATATTTT+TGG - chr8_3:45166030-45166049 Msa1290450:intron 15.0%
!!! TCATACAATTCTTTTTTTTT+TGG + chr8_3:45167190-45167209 None:intergenic 15.0%
!! ATAAAATGCAATAATATAGA+AGG + chr8_3:45167314-45167333 None:intergenic 15.0%
!! ATAAAATGCAATAATATAGA+AGG + chr8_3:45167314-45167333 None:intergenic 15.0%
!! AAAATAAAATATGTCAAAGT+GGG + chr8_3:45169169-45169188 None:intergenic 15.0%
!! AAAAATAAAATATGTCAAAG+TGG + chr8_3:45169170-45169189 None:intergenic 15.0%
!! AAAAAGAAAAACATAGGATT+TGG + chr8_3:45164495-45164514 None:intergenic 20.0%
!! CATTGAAAAAAGAAAAACAT+AGG + chr8_3:45164501-45164520 None:intergenic 20.0%
!! TATCTACTAACTCATAAAAA+TGG - chr8_3:45164753-45164772 Msa1290450:intron 20.0%
!!! TATTACTAAATAGAGTATCT+CGG + chr8_3:45164944-45164963 None:intergenic 20.0%
!! AATAAAATGTTGTCTAATTG+CGG - chr8_3:45164960-45164979 Msa1290450:intron 20.0%
!! AGAAAGTAAATTAGGAATAA+GGG + chr8_3:45165173-45165192 None:intergenic 20.0%
!!! TATCAAGTTTTATGGTAAAA+AGG + chr8_3:45165281-45165300 None:intergenic 20.0%
!! TTAAAATTCACTTAACTCTA+GGG + chr8_3:45165742-45165761 None:intergenic 20.0%
!! ATTAAAATTCACTTAACTCT+AGG + chr8_3:45165743-45165762 None:intergenic 20.0%
!!! AAATAAAGAATTTTTCGGTA+CGG + chr8_3:45165813-45165832 None:intergenic 20.0%
!!! GTACTATAAATAAAGTATCA+CGG + chr8_3:45166161-45166180 None:intergenic 20.0%
!! TAAATAAAAGGAAGTAAACT+AGG + chr8_3:45166355-45166374 None:intergenic 20.0%
!!! AGTTTACTTCCTTTTATTTA+AGG - chr8_3:45166355-45166374 Msa1290450:intron 20.0%
!!! TTTTACTAAGTAACTTATCA+TGG - chr8_3:45166700-45166719 Msa1290450:intron 20.0%
!! TTTACTAAGTAACTTATCAT+GGG - chr8_3:45166701-45166720 Msa1290450:intron 20.0%
!! ATATAAAACAAATAGAAAGC+TGG + chr8_3:45166848-45166867 None:intergenic 20.0%
!!! TTTTACTAAGTAACTTATCA+TGG - chr8_3:45166700-45166719 Msa1290450:intron 20.0%
!! TTTACTAAGTAACTTATCAT+GGG - chr8_3:45166701-45166720 Msa1290450:intron 20.0%
!!! TTCATTATTTCTAAACCTTT+TGG - chr8_3:45169112-45169131 Msa1290450:CDS 20.0%
!! AAATAAAATATGTCAAAGTG+GGG + chr8_3:45169168-45169187 None:intergenic 20.0%
!!! TTTATTTCTAAAACCTTGTT+TGG - chr8_3:45169187-45169206 Msa1290450:CDS 20.0%
!! ATCAAAGATTTCACCTTTTT+AGG - chr8_3:45163987-45164006 Msa1290450:three_prime_UTR 25.0%
! ATATCAAGAAGACAATGATT+TGG + chr8_3:45164035-45164054 None:intergenic 25.0%
! ATATTAATGCTCTTCAATCT+AGG - chr8_3:45164051-45164070 Msa1290450:three_prime_UTR 25.0%
! TATTAATGCTCTTCAATCTA+GGG - chr8_3:45164052-45164071 Msa1290450:three_prime_UTR 25.0%
!! TAGTTCAACTAGTTTGATTA+AGG - chr8_3:45164176-45164195 Msa1290450:CDS 25.0%
! TTGATTAAGGAATAAAGAGA+TGG - chr8_3:45164189-45164208 Msa1290450:CDS 25.0%
! GATAAGAGAGAAAACAATAT+AGG - chr8_3:45164429-45164448 Msa1290450:intron 25.0%
! ATCTTATTGTGATATAACCT+TGG - chr8_3:45164720-45164739 Msa1290450:intron 25.0%
! GAAAGTAAATTAGGAATAAG+GGG + chr8_3:45165172-45165191 None:intergenic 25.0%
! CAGAAAGTAAATTAGGAATA+AGG + chr8_3:45165174-45165193 None:intergenic 25.0%
! CTTATTCCTAATTTACTTTC+TGG - chr8_3:45165172-45165191 Msa1290450:intron 25.0%
!!! ACTTTAGGGATTTCATTTTA+GGG - chr8_3:45165213-45165232 Msa1290450:intron 25.0%
! ATAAAACTTGATACACACTT+GGG - chr8_3:45165288-45165307 Msa1290450:intron 25.0%
! AATATGTCCAAACAAAATGT+GGG - chr8_3:45165375-45165394 Msa1290450:intron 25.0%
!!! TAGTGTTGGTTATCATAATA+TGG - chr8_3:45165641-45165660 Msa1290450:intron 25.0%
! ACAAAAAACCTACAAAACAA+AGG + chr8_3:45165686-45165705 None:intergenic 25.0%
!!! TTTTGGTTAATTTTGCTGTA+TGG - chr8_3:45165763-45165782 Msa1290450:intron 25.0%
!!! TTTGGTTAATTTTGCTGTAT+GGG - chr8_3:45165764-45165783 Msa1290450:intron 25.0%
!! AAATGCCTTTAAAAGTTTAC+CGG - chr8_3:45165938-45165957 Msa1290450:intron 25.0%
!!! AGTGTTTTTGAGAATAGTTT+AGG - chr8_3:45165985-45166004 Msa1290450:intron 25.0%
!!! GTGTTTTTGAGAATAGTTTA+GGG - chr8_3:45165986-45166005 Msa1290450:intron 25.0%
! TAAAAGACGAATTGATTGTA+TGG + chr8_3:45166064-45166083 None:intergenic 25.0%
!!! TGTAGAGCTTTCATTTTTAA+GGG - chr8_3:45166382-45166401 Msa1290450:intron 25.0%
! TATCAATTGAGTAATGTGAA+GGG - chr8_3:45166526-45166545 Msa1290450:intron 25.0%
!! GTAATTGACAACATTGTTTT+TGG + chr8_3:45166599-45166618 None:intergenic 25.0%
!!! TTTAGTCTTAAATGCAACTA+TGG - chr8_3:45167110-45167129 Msa1290450:intron 25.0%
!!! ATTTTTCAGTTCTCTTTTGA+AGG + chr8_3:45167263-45167282 None:intergenic 25.0%
! AGAACTGAAAAATGAAAACT+TGG - chr8_3:45167270-45167289 Msa1290450:intron 25.0%
! GAACTGAAAAATGAAAACTT+GGG - chr8_3:45167271-45167290 Msa1290450:intron 25.0%
! AAAAGTTATTACATCCATTG+AGG - chr8_3:45167341-45167360 Msa1290450:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr8_3:45167368-45167387 None:intergenic 25.0%
! TAAACTTATCTATTGACACA+AGG - chr8_3:45167385-45167404 Msa1290450:intron 25.0%
!! TCAATTTTCATAACCTATTC+TGG + chr8_3:45167494-45167513 None:intergenic 25.0%
!! GTAATTGACAACATTGTTTT+TGG + chr8_3:45166599-45166618 None:intergenic 25.0%
! AAAACAAATAGAAAGTTCCA+AGG + chr8_3:45167874-45167893 None:intergenic 25.0%
!!! TTTAGTCTTAAATGCAACTA+TGG - chr8_3:45167110-45167129 Msa1290450:intron 25.0%
! AAAAATTGTATGAACATCAG+AGG - chr8_3:45168230-45168249 Msa1290450:intron 25.0%
!!! ATTTTTCAGTTCTCTTTTGA+AGG + chr8_3:45167263-45167282 None:intergenic 25.0%
! AGAACTGAAAAATGAAAACT+TGG - chr8_3:45167270-45167289 Msa1290450:intron 25.0%
! GAACTGAAAAATGAAAACTT+GGG - chr8_3:45167271-45167290 Msa1290450:intron 25.0%
! AAAAGTTATTACATCCATTG+AGG - chr8_3:45167341-45167360 Msa1290450:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr8_3:45167368-45167387 None:intergenic 25.0%
! TAAACTTATCTATTGACACA+AGG - chr8_3:45167385-45167404 Msa1290450:intron 25.0%
!! TCAATTTTCATAACCTATTC+TGG + chr8_3:45167494-45167513 None:intergenic 25.0%
! TTAGGAATTTGAGTAATTTG+TGG - chr8_3:45168672-45168691 Msa1290450:intron 25.0%
!! TAGGAATTTGAGTAATTTGT+GGG - chr8_3:45168673-45168692 Msa1290450:intron 25.0%
! AAATGATACAACTTATTGCT+CGG - chr8_3:45168804-45168823 Msa1290450:intron 25.0%
! ACAAAATTTGCATCCTATAA+TGG - chr8_3:45169007-45169026 Msa1290450:intron 25.0%
! GAGTAAATAATATCACCAAA+AGG + chr8_3:45169130-45169149 None:intergenic 25.0%
! GTAAATATGGCAATATCATT+GGG + chr8_3:45169215-45169234 None:intergenic 25.0%
! TCATCTTATCTTTACTTTGT+AGG - chr8_3:45169256-45169275 Msa1290450:CDS 25.0%
!!! TTGTTTTATAGTTGAGAAGA+AGG - chr8_3:45169393-45169412 Msa1290450:exon 25.0%
CAGTCAAAACAAACAAAAGA+TGG - chr8_3:45163761-45163780 Msa1290450:three_prime_UTR 30.0%
ATTAAGGAATAAAGAGATGG+AGG - chr8_3:45164192-45164211 Msa1290450:CDS 30.0%
!!! ATAGTTTTGTTCTTTTCGTC+CGG + chr8_3:45164232-45164251 None:intergenic 30.0%
ATTGTTAATGAGTCCCATAT+CGG - chr8_3:45164303-45164322 Msa1290450:intron 30.0%
CTGAACTTGTGTTTATAAGT+GGG - chr8_3:45164338-45164357 Msa1290450:intron 30.0%
TGAACTTGTGTTTATAAGTG+GGG - chr8_3:45164339-45164358 Msa1290450:intron 30.0%
CTAACACAATCCTACAAAAT+TGG + chr8_3:45164383-45164402 None:intergenic 30.0%
! CAATTTTGTAGGATTGTGTT+AGG - chr8_3:45164381-45164400 Msa1290450:intron 30.0%
GTAGATACTAATCTAATCCA+AGG + chr8_3:45164740-45164759 None:intergenic 30.0%
GCTAGAAGTTTAGAGATTTA+TGG - chr8_3:45164775-45164794 Msa1290450:intron 30.0%
AGAACAATGTTGTCAAATTG+CGG - chr8_3:45164876-45164895 Msa1290450:intron 30.0%
! TTTCTGGCATGCATTATTTA+GGG - chr8_3:45165188-45165207 Msa1290450:intron 30.0%
! CATTATTTAGGGTGACTTTA+GGG - chr8_3:45165199-45165218 Msa1290450:intron 30.0%
!! GACTTTAGGGATTTCATTTT+AGG - chr8_3:45165212-45165231 Msa1290450:intron 30.0%
!! CTTTAGGGATTTCATTTTAG+GGG - chr8_3:45165214-45165233 Msa1290450:intron 30.0%
! CAAGTGTGTATCAAGTTTTA+TGG + chr8_3:45165289-45165308 None:intergenic 30.0%
CATAAAACTTGATACACACT+TGG - chr8_3:45165287-45165306 Msa1290450:intron 30.0%
AGTTATGTTAGATGTCCTAA+TGG - chr8_3:45165314-45165333 Msa1290450:intron 30.0%
TTCACATTATTCAGTCGATA+CGG + chr8_3:45165357-45165376 None:intergenic 30.0%
GAATATGTCCAAACAAAATG+TGG - chr8_3:45165374-45165393 Msa1290450:intron 30.0%
ATATGTCCAAACAAAATGTG+GGG - chr8_3:45165376-45165395 Msa1290450:intron 30.0%
TAGATAGTGTTGTCAAATAG+CGG + chr8_3:45165583-45165602 None:intergenic 30.0%
TAATATGGATGCTAGAAAAC+TGG - chr8_3:45165656-45165675 Msa1290450:intron 30.0%
TTAGAAACTAATCCAATCTG+GGG + chr8_3:45165849-45165868 None:intergenic 30.0%
GTTAGAAACTAATCCAATCT+GGG + chr8_3:45165850-45165869 None:intergenic 30.0%
AGTTAGAAACTAATCCAATC+TGG + chr8_3:45165851-45165870 None:intergenic 30.0%
! AATGCCTTTAAAAGTTTACC+GGG - chr8_3:45165939-45165958 Msa1290450:intron 30.0%
! GTACAAAGTGTTAACAATAG+CGG - chr8_3:45166177-45166196 Msa1290450:CDS 30.0%
GTGATTGACAGCAATATATA+CGG - chr8_3:45166256-45166275 Msa1290450:intron 30.0%
AGGAAGTAAACTAGGAATAA+GGG + chr8_3:45166347-45166366 None:intergenic 30.0%
AAGGAAGTAAACTAGGAATA+AGG + chr8_3:45166348-45166367 None:intergenic 30.0%
CTACAGTCACCTTAAATAAA+AGG + chr8_3:45166367-45166386 None:intergenic 30.0%
!! CTGTAGAGCTTTCATTTTTA+AGG - chr8_3:45166381-45166400 Msa1290450:intron 30.0%
ACATTACTCAATTGATACAC+CGG + chr8_3:45166523-45166542 None:intergenic 30.0%
GTATCAATTGAGTAATGTGA+AGG - chr8_3:45166525-45166544 Msa1290450:intron 30.0%
ATGTTGTCAATTACAGATTG+CGG - chr8_3:45166605-45166624 Msa1290450:intron 30.0%
TTACAGATTGCGGAAAATAA+CGG - chr8_3:45166615-45166634 Msa1290450:intron 30.0%
TGACAATGTCATCAGTTAAA+AGG + chr8_3:45166932-45166951 None:intergenic 30.0%
ATCACACATTCAGAGTTATA+AGG + chr8_3:45167025-45167044 None:intergenic 30.0%
TATAACTCTGAATGTGTGAT+TGG - chr8_3:45167025-45167044 Msa1290450:intron 30.0%
AAGAATTGTATGAACATCAG+AGG - chr8_3:45167197-45167216 Msa1290450:intron 30.0%
TGAAGGAATGATGAATCATA+AGG + chr8_3:45167246-45167265 None:intergenic 30.0%
ATGTTGTCAATTACAGATTG+CGG - chr8_3:45166605-45166624 Msa1290450:intron 30.0%
TTACAGATTGCGGAAAATAA+CGG - chr8_3:45166615-45166634 Msa1290450:intron 30.0%
TGACAATGTCATCAGTTAAA+AGG + chr8_3:45166932-45166951 None:intergenic 30.0%
ATCACACATTCAGAGTTATA+AGG + chr8_3:45167025-45167044 None:intergenic 30.0%
TATAACTCTGAATGTGTGAT+TGG - chr8_3:45167025-45167044 Msa1290450:intron 30.0%
TGAAGGAATGATGAATCATA+AGG + chr8_3:45167246-45167265 None:intergenic 30.0%
AGTTCAAATAAGAGGATGTT+TGG + chr8_3:45168642-45168661 None:intergenic 30.0%
! AAACATCCTCTTATTTGAAC+TGG - chr8_3:45168641-45168660 Msa1290450:intron 30.0%
! AACATCCTCTTATTTGAACT+GGG - chr8_3:45168642-45168661 Msa1290450:intron 30.0%
GTATCTCTTCATACAATGAA+GGG + chr8_3:45168719-45168738 None:intergenic 30.0%
AGTATCTCTTCATACAATGA+AGG + chr8_3:45168720-45168739 None:intergenic 30.0%
AGAGATACTCATTACTTTAG+AGG - chr8_3:45168731-45168750 Msa1290450:intron 30.0%
! ATTACTTTAGAGGACTCTAT+TGG - chr8_3:45168741-45168760 Msa1290450:intron 30.0%
TAACATCAAACCAAGTACTA+GGG + chr8_3:45168908-45168927 None:intergenic 30.0%
TTAACATCAAACCAAGTACT+AGG + chr8_3:45168909-45168928 None:intergenic 30.0%
GTTTCTTTCTCAACCATTAT+AGG + chr8_3:45169023-45169042 None:intergenic 30.0%
GGTAAATATGGCAATATCAT+TGG + chr8_3:45169216-45169235 None:intergenic 30.0%
GTAAAGATAAGATGAATGAG+TGG + chr8_3:45169251-45169270 None:intergenic 30.0%
TCTTATCTTTACTTTGTAGG+AGG - chr8_3:45169259-45169278 Msa1290450:CDS 30.0%
ACGTTAGGTGATGAATTTGA+AGG - chr8_3:45163864-45163883 Msa1290450:three_prime_UTR 35.0%
AAAAGCCTAATATTTCGACG+AGG + chr8_3:45163954-45163973 None:intergenic 35.0%
!!! GATTTCACCTTTTTAGGTCA+AGG - chr8_3:45163993-45164012 Msa1290450:three_prime_UTR 35.0%
! GACAATGATTTGGATCAAGT+GGG + chr8_3:45164025-45164044 None:intergenic 35.0%
! AGACAATGATTTGGATCAAG+TGG + chr8_3:45164026-45164045 None:intergenic 35.0%
!!! TAGTTTTGTTCTTTTCGTCC+GGG + chr8_3:45164231-45164250 None:intergenic 35.0%
GTCCCATATCGGAAAAAATA+TGG - chr8_3:45164314-45164333 Msa1290450:intron 35.0%
!!! GGCCATATTTTTTCCGATAT+GGG + chr8_3:45164319-45164338 None:intergenic 35.0%
!!! AGGCCATATTTTTTCCGATA+TGG + chr8_3:45164320-45164339 None:intergenic 35.0%
CCACTTATAAACACAAGTTC+AGG + chr8_3:45164340-45164359 None:intergenic 35.0%
CCTGAACTTGTGTTTATAAG+TGG - chr8_3:45164337-45164356 Msa1290450:intron 35.0%
AACAAGTCACAATGAATCTG+TGG + chr8_3:45164465-45164484 None:intergenic 35.0%
TCCATTGATGAACTCGAAAA+CGG + chr8_3:45164692-45164711 None:intergenic 35.0%
! TACTAAATAGAGTATCTCGG+TGG + chr8_3:45164941-45164960 None:intergenic 35.0%
!! TAGTTGACTAGTTTCCAATC+TGG - chr8_3:45165142-45165161 Msa1290450:CDS 35.0%
TGCATGCCAGAAAGTAAATT+AGG + chr8_3:45165181-45165200 None:intergenic 35.0%
! CTTTCTGGCATGCATTATTT+AGG - chr8_3:45165187-45165206 Msa1290450:intron 35.0%
! GCATTATTTAGGGTGACTTT+AGG - chr8_3:45165198-45165217 Msa1290450:intron 35.0%
CAATTCCTCTTTGGTTGTAA+TGG - chr8_3:45165241-45165260 Msa1290450:intron 35.0%
!!! CATGGGTACTTCTTTTTTGT+TGG - chr8_3:45165399-45165418 Msa1290450:intron 35.0%
CATATGCAAGACATACAATC+AGG + chr8_3:45165619-45165638 None:intergenic 35.0%
ATTGTGATATAACCCCAGAT+TGG - chr8_3:45165834-45165853 Msa1290450:intron 35.0%
! AACTCCCGGTAAACTTTTAA+AGG + chr8_3:45165946-45165965 None:intergenic 35.0%
TTAATTTCACGATGAACTCC+CGG + chr8_3:45165960-45165979 None:intergenic 35.0%
AGAGCAATGTTGTCAAATAG+TGG - chr8_3:45166093-45166112 Msa1290450:CDS 35.0%
! ACTATGCTATAGTGCTACTA+TGG + chr8_3:45166203-45166222 None:intergenic 35.0%
ATAGTAGCACTATAGCATAG+TGG - chr8_3:45166202-45166221 Msa1290450:intron 35.0%
TAGTAGCACTATAGCATAGT+GGG - chr8_3:45166203-45166222 Msa1290450:intron 35.0%
AGTAGCACATATGTTCTATC+TGG - chr8_3:45166310-45166329 Msa1290450:intron 35.0%
ATGTTCCATTCACAGTCAAA+GGG + chr8_3:45166418-45166437 None:intergenic 35.0%
TATGTTCCATTCACAGTCAA+AGG + chr8_3:45166419-45166438 None:intergenic 35.0%
GATGTCCAAACAAAATGTGA+GGG - chr8_3:45166548-45166567 Msa1290450:intron 35.0%
ATGTCCAAACAAAATGTGAG+GGG - chr8_3:45166549-45166568 Msa1290450:intron 35.0%
TACAGATTGCGGAAAATAAC+GGG - chr8_3:45166616-45166635 Msa1290450:intron 35.0%
AGTAACTTATCATGGGACAA+TGG - chr8_3:45166708-45166727 Msa1290450:intron 35.0%
!! CATTTTGGTACTTTTTGCCT+TGG - chr8_3:45166817-45166836 Msa1290450:intron 35.0%
CTCATTCATCACAACTATGA+CGG + chr8_3:45166987-45167006 None:intergenic 35.0%
GAAAAATGAAAACTTGGGCA+CGG - chr8_3:45167276-45167295 Msa1290450:intron 35.0%
TACAGATTGCGGAAAATAAC+GGG - chr8_3:45166616-45166635 Msa1290450:intron 35.0%
AGTAACTTATCATGGGACAA+TGG - chr8_3:45166708-45166727 Msa1290450:intron 35.0%
CTCATTCATCACAACTATGA+CGG + chr8_3:45166987-45167006 None:intergenic 35.0%
GAAAAATGAAAACTTGGGCA+CGG - chr8_3:45167276-45167295 Msa1290450:intron 35.0%
GAATTATTGCTGAACGTGAA+AGG + chr8_3:45168881-45168900 None:intergenic 35.0%
TAATTCTTGTCCCTAGTACT+TGG - chr8_3:45168895-45168914 Msa1290450:intron 35.0%
AACAAAACTCAAGAGCTTCA+AGG + chr8_3:45169090-45169109 None:intergenic 35.0%
ATATCATTGGGTTCCAAACA+AGG + chr8_3:45169203-45169222 None:intergenic 35.0%
ATGTAGCACTGTGGTAAATA+TGG + chr8_3:45169228-45169247 None:intergenic 35.0%
! TTGTTACTTCTGCTGTGTTG+TGG + chr8_3:45163738-45163757 None:intergenic 40.0%
GTAGTTGGAATCACGATCAA+AGG + chr8_3:45163901-45163920 None:intergenic 40.0%
TTCTTGAAGTACGAGGTAGT+TGG + chr8_3:45163916-45163935 None:intergenic 40.0%
AACTACCTCGTACTTCAAGA+AGG - chr8_3:45163915-45163934 Msa1290450:three_prime_UTR 40.0%
CTTCAAGAAGGTTCCAAACA+TGG - chr8_3:45163927-45163946 Msa1290450:three_prime_UTR 40.0%
ATGGTCCTCGTCGAAATATT+AGG - chr8_3:45163946-45163965 Msa1290450:three_prime_UTR 40.0%
GTCTTGACCTTGACCTAAAA+AGG + chr8_3:45164003-45164022 None:intergenic 40.0%
CTAGGGAAGAACTTGCAATT+AGG - chr8_3:45164069-45164088 Msa1290450:three_prime_UTR 40.0%
! GGAGGATTTAAGTTCAAACC+CGG - chr8_3:45164210-45164229 Msa1290450:intron 40.0%
! ACCTCACAAGCCAATTTTGT+AGG - chr8_3:45164370-45164389 Msa1290450:intron 40.0%
!! TCCTACAAAATTGGCTTGTG+AGG + chr8_3:45164374-45164393 None:intergenic 40.0%
TAAAACGTAAGTGCTTAGCG+CGG - chr8_3:45164643-45164662 Msa1290450:intron 40.0%
!!! TCCGTTTTCGAGTTCATCAA+TGG - chr8_3:45164688-45164707 Msa1290450:intron 40.0%
ATGTTGTCTAATTGCGGCTA+TGG - chr8_3:45164966-45164985 Msa1290450:intron 40.0%
CAATCTGTTCAAATTCCGCT+AGG + chr8_3:45165011-45165030 None:intergenic 40.0%
GAATAAGGGGAAATCCAGAT+TGG + chr8_3:45165159-45165178 None:intergenic 40.0%
!! AGGGATTTCATTTTAGGGGA+AGG - chr8_3:45165218-45165237 Msa1290450:intron 40.0%
CATGTCCATTACAACCAAAG+AGG + chr8_3:45165249-45165268 None:intergenic 40.0%
TTGAGACTTGAGGAACCATT+AGG + chr8_3:45165332-45165351 None:intergenic 40.0%
ATGTTGTCCAATGCAGTTTG+TGG - chr8_3:45165432-45165451 Msa1290450:intron 40.0%
TCAAATTTCACTATGCTGCG+CGG - chr8_3:45165470-45165489 Msa1290450:intron 40.0%
GTCTTGCATATGCTTAGTGT+TGG - chr8_3:45165627-45165646 Msa1290450:intron 40.0%
!!! CTGGTAGACCTTTGTTTTGT+AGG - chr8_3:45165675-45165694 Msa1290450:intron 40.0%
CGGTACGGATGAGAAAATAT+GGG + chr8_3:45165798-45165817 None:intergenic 40.0%
TCGGTACGGATGAGAAAATA+TGG + chr8_3:45165799-45165818 None:intergenic 40.0%
GCAATGTTGTCAAATAGTGG+CGG - chr8_3:45166096-45166115 Msa1290450:CDS 40.0%
TCACAGATCGCAGAAAATAG+CGG + chr8_3:45166240-45166259 None:intergenic 40.0%
ACAGCAATATATACGGCTAG+TGG - chr8_3:45166263-45166282 Msa1290450:intron 40.0%
AATTCCCCTTTGACTGTGAA+TGG - chr8_3:45166410-45166429 Msa1290450:intron 40.0%
TGTTCCATTCACAGTCAAAG+GGG + chr8_3:45166417-45166436 None:intergenic 40.0%
! TTTCAAGTGTTCCCAAAGTC+CGG - chr8_3:45166501-45166520 Msa1290450:intron 40.0%
CAATTGATACACCGGACTTT+GGG + chr8_3:45166515-45166534 None:intergenic 40.0%
TCAATTGATACACCGGACTT+TGG + chr8_3:45166516-45166535 None:intergenic 40.0%
GGATGTCCAAACAAAATGTG+AGG - chr8_3:45166547-45166566 Msa1290450:intron 40.0%
!!! CAGGGGAACTTCTTTTTTGT+TGG - chr8_3:45166572-45166591 Msa1290450:intron 40.0%
GGGTTGTTCAAATTCCACTA+TGG - chr8_3:45166636-45166655 Msa1290450:intron 40.0%
! ACTATAGCACTGAACCATAG+TGG + chr8_3:45166653-45166672 None:intergenic 40.0%
TTGTGTCGCGGAAAAGAAAA+AGG + chr8_3:45166796-45166815 None:intergenic 40.0%
! TTTCCGCGACACAAACATTT+TGG - chr8_3:45166802-45166821 Msa1290450:intron 40.0%
GTACCAAAATGTTTGTGTCG+CGG + chr8_3:45166808-45166827 None:intergenic 40.0%
GATGACATTGTCATGTAACC+AGG - chr8_3:45166939-45166958 Msa1290450:intron 40.0%
CGTCATAGTTGTGATGAATG+AGG - chr8_3:45166985-45167004 Msa1290450:intron 40.0%
AACTCTGAATGTGTGATTGG+TGG - chr8_3:45167028-45167047 Msa1290450:intron 40.0%
TGTTTACCACTTTCTTCACC+CGG + chr8_3:45167072-45167091 None:intergenic 40.0%
CATGTAATTGCTTGTCCTTG+TGG - chr8_3:45167220-45167239 Msa1290450:intron 40.0%
TGATGAATCATAAGGCCACA+AGG + chr8_3:45167238-45167257 None:intergenic 40.0%
AAACTGTTTGCGAGAGCTTA+TGG - chr8_3:45167415-45167434 Msa1290450:intron 40.0%
TTCCATAAGCTCTCCAGAAT+AGG - chr8_3:45167478-45167497 Msa1290450:intron 40.0%
! AACCTATTCTGGAGAGCTTA+TGG + chr8_3:45167483-45167502 None:intergenic 40.0%
GGGTTGTTCAAATTCCACTA+TGG - chr8_3:45166636-45166655 Msa1290450:intron 40.0%
! ACTATAGCACTGAACCATAG+TGG + chr8_3:45166653-45166672 None:intergenic 40.0%
TTGTGTCGCGGAAAAGAAAA+AGG + chr8_3:45166796-45166815 None:intergenic 40.0%
! TTTCCGCGACACAAACATTT+TGG - chr8_3:45166802-45166821 Msa1290450:intron 40.0%
!!! CATTTTGGTGCTTTTTGCCT+TGG - chr8_3:45167854-45167873 Msa1290450:intron 40.0%
GATGACATTGTCATGTAACC+AGG - chr8_3:45166939-45166958 Msa1290450:intron 40.0%
CGTCATAGTTGTGATGAATG+AGG - chr8_3:45166985-45167004 Msa1290450:intron 40.0%
AACTCTGAATGTGTGATTGG+TGG - chr8_3:45167028-45167047 Msa1290450:intron 40.0%
TGTTTACCACTTTCTTCACC+CGG + chr8_3:45167072-45167091 None:intergenic 40.0%
CATGTAATTGCTTGTCCTTG+TGG - chr8_3:45167220-45167239 Msa1290450:intron 40.0%
TGATGAATCATAAGGCCACA+AGG + chr8_3:45167238-45167257 None:intergenic 40.0%
TTCCATAAGCTCTCCAGAAT+AGG - chr8_3:45167478-45167497 Msa1290450:intron 40.0%
! AACCTATTCTGGAGAGCTTA+TGG + chr8_3:45167483-45167502 None:intergenic 40.0%
ACTAGCCCAGTTCAAATAAG+AGG + chr8_3:45168650-45168669 None:intergenic 40.0%
!! TTTGAACTGGGCTAGTGATT+AGG - chr8_3:45168654-45168673 Msa1290450:intron 40.0%
! CTATTGGCTACGACATGTTT+CGG - chr8_3:45168757-45168776 Msa1290450:intron 40.0%
TCGAACTCAAGCTGCAAAAA+AGG + chr8_3:45168943-45168962 None:intergenic 40.0%
TGGTTGAGAAAGAAACTCCA+AGG - chr8_3:45169027-45169046 Msa1290450:intron 40.0%
! TTCATCGCGTTTTTCTACCT+TGG + chr8_3:45169047-45169066 None:intergenic 40.0%
TGAAGTTCAGTCGCATACAA+CGG + chr8_3:45169327-45169346 None:intergenic 40.0%
ACAAAAGATGGCGATGACGA+TGG - chr8_3:45163773-45163792 Msa1290450:three_prime_UTR 45.0%
CAACAACGGAGATGAGTTTG+CGG - chr8_3:45163815-45163834 Msa1290450:three_prime_UTR 45.0%
! TGGGTTGTTTCCTTTCGATC+AGG - chr8_3:45163838-45163857 Msa1290450:three_prime_UTR 45.0%
CTAACGTTGTCCTGATCGAA+AGG + chr8_3:45163851-45163870 None:intergenic 45.0%
CTTTCGATCAGGACAACGTT+AGG - chr8_3:45163849-45163868 Msa1290450:three_prime_UTR 45.0%
TGGAACCTTCTTGAAGTACG+AGG + chr8_3:45163923-45163942 None:intergenic 45.0%
ATTTCGACGAGGACCATGTT+TGG + chr8_3:45163943-45163962 None:intergenic 45.0%
GATTGTGTTAGGCCCAATCA+CGG - chr8_3:45164392-45164411 Msa1290450:intron 45.0%
ACAATAGAGTCGCCGTGATT+GGG + chr8_3:45164407-45164426 None:intergenic 45.0%
TACAATAGAGTCGCCGTGAT+TGG + chr8_3:45164408-45164427 None:intergenic 45.0%
AAGCAGATGCTGAGAGGATT+GGG - chr8_3:45164576-45164595 Msa1290450:intron 45.0%
GATGAACTCGAAAACGGACA+TGG + chr8_3:45164686-45164705 None:intergenic 45.0%
TCAAATTCCGCTAGGCTACA+GGG + chr8_3:45165003-45165022 None:intergenic 45.0%
TTCAAATTCCGCTAGGCTAC+AGG + chr8_3:45165004-45165023 None:intergenic 45.0%
! TTCCACAAGCTCTGATAGAG+TGG + chr8_3:45165060-45165079 None:intergenic 45.0%
TCCAAACAAAATGTGGGGCA+TGG - chr8_3:45165381-45165400 Msa1290450:intron 45.0%
CCAAACAAAATGTGGGGCAT+GGG - chr8_3:45165382-45165401 Msa1290450:intron 45.0%
CTAGTGTCCACAAACTGCAT+TGG + chr8_3:45165442-45165461 None:intergenic 45.0%
ATGCAGTTTGTGGACACTAG+TGG - chr8_3:45165442-45165461 Msa1290450:intron 45.0%
AAATAGCGGCGCTACAACAT+GGG + chr8_3:45165569-45165588 None:intergenic 45.0%
CAAACAAAATGTGAGGGGCA+GGG - chr8_3:45166554-45166573 Msa1290450:intron 45.0%
AAACAAAATGTGAGGGGCAG+GGG - chr8_3:45166555-45166574 Msa1290450:intron 45.0%
ATAGAAAGCTGGCGATTCCA+AGG + chr8_3:45166837-45166856 None:intergenic 45.0%
AAATGACCGGGTGAAGAAAG+TGG - chr8_3:45167063-45167082 Msa1290450:intron 45.0%
ACATCCATTGAGGTCCTGTT+TGG - chr8_3:45167351-45167370 Msa1290450:intron 45.0%
CAATCCAAACAGGACCTCAA+TGG + chr8_3:45167358-45167377 None:intergenic 45.0%
GCACCAAAATGTTTGTGTCG+CGG + chr8_3:45167845-45167864 None:intergenic 45.0%
AAATGACCGGGTGAAGAAAG+TGG - chr8_3:45167063-45167082 Msa1290450:intron 45.0%
ACATCCATTGAGGTCCTGTT+TGG - chr8_3:45167351-45167370 Msa1290450:intron 45.0%
CAATCCAAACAGGACCTCAA+TGG + chr8_3:45167358-45167377 None:intergenic 45.0%
TTCATACAATGAAGGGACCG+AGG + chr8_3:45168712-45168731 None:intergenic 45.0%
! TTTTGCAGCTTGAGTTCGAG+AGG - chr8_3:45168944-45168963 Msa1290450:intron 45.0%
AATGAGTGGATGTAGCACTG+TGG + chr8_3:45169237-45169256 None:intergenic 45.0%
GAAGTTCAGTCGCATACAAC+GGG + chr8_3:45169326-45169345 None:intergenic 45.0%
!!! AATTTTAAATTTTTATTGAT+GGG - chr8_3:45164148-45164167 Msa1290450:three_prime_UTR 5.0%
!!! TACAAAATTAATTTTTTTAA+TGG + chr8_3:45164257-45164276 None:intergenic 5.0%
!!! TATTTTTTTATAATAAAACA+TGG - chr8_3:45166447-45166466 Msa1290450:intron 5.0%
!!! TACAATTTTTTTTTTTTTTT+TGG + chr8_3:45168220-45168239 None:intergenic 5.0%
!! AAAAAAAAAAAAAAACAAAA+GGG + chr8_3:45168844-45168863 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAACAAA+AGG + chr8_3:45168845-45168864 None:intergenic 5.0%
ATGGCGATGACGATGGAAAG+TGG - chr8_3:45163780-45163799 Msa1290450:three_prime_UTR 50.0%
GGCAGCAGCAACAACAACAA+CGG - chr8_3:45163801-45163820 Msa1290450:three_prime_UTR 50.0%
AACGGAGATGAGTTTGCGGT+GGG - chr8_3:45163819-45163838 Msa1290450:three_prime_UTR 50.0%
AAGCTGAAGCAGATGCTGAG+AGG - chr8_3:45164570-45164589 Msa1290450:intron 50.0%
GAAGCAGATGCTGAGAGGAT+TGG - chr8_3:45164575-45164594 Msa1290450:intron 50.0%
AGCAGATGCTGAGAGGATTG+GGG - chr8_3:45164577-45164596 Msa1290450:intron 50.0%
CACCACTCTATCAGAGCTTG+TGG - chr8_3:45165055-45165074 Msa1290450:intron 50.0%
ACACATTTGAGCGCTACGAC+AGG + chr8_3:45165123-45165142 None:intergenic 50.0%
AGGGGAAGGCAATTCCTCTT+TGG - chr8_3:45165232-45165251 Msa1290450:intron 50.0%
! CGATACGGTGTTGAGACTTG+AGG + chr8_3:45165342-45165361 None:intergenic 50.0%
! CCCATGCCCCACATTTTGTT+TGG + chr8_3:45165385-45165404 None:intergenic 50.0%
AATAGCGGCGCTACAACATG+GGG + chr8_3:45165568-45165587 None:intergenic 50.0%
CAAATAGCGGCGCTACAACA+TGG + chr8_3:45165570-45165589 None:intergenic 50.0%
! CCTGCCCCTCACATTTTGTT+TGG + chr8_3:45166556-45166575 None:intergenic 50.0%
CCAAACAAAATGTGAGGGGC+AGG - chr8_3:45166553-45166572 Msa1290450:intron 50.0%
GTACTCCTGCTGCAAATGAC+CGG - chr8_3:45167050-45167069 Msa1290450:intron 50.0%
TACTCCTGCTGCAAATGACC+GGG - chr8_3:45167051-45167070 Msa1290450:intron 50.0%
GTACTCCTGCTGCAAATGAC+CGG - chr8_3:45167050-45167069 Msa1290450:intron 50.0%
TACTCCTGCTGCAAATGACC+GGG - chr8_3:45167051-45167070 Msa1290450:intron 50.0%
AGCTTGAGTTCGAGAGGAAG+AGG - chr8_3:45168950-45168969 Msa1290450:intron 50.0%
AGGAAGAGGTTGCAACTTCG+CGG - chr8_3:45168964-45168983 Msa1290450:intron 50.0%
AAACGAGTCCTCGTCTGATC+TGG + chr8_3:45169356-45169375 None:intergenic 50.0%
CAACGGAGATGAGTTTGCGG+TGG - chr8_3:45163818-45163837 Msa1290450:three_prime_UTR 55.0%
GATGCTGAGAGGATTGGGGT+TGG - chr8_3:45164581-45164600 Msa1290450:intron 55.0%
ACTCTAGCCCTGTAGCCTAG+CGG - chr8_3:45164993-45165012 Msa1290450:intron 55.0%
ATAGCGGCGCTACAACATGG+GGG + chr8_3:45165567-45165586 None:intergenic 55.0%
! CTATGACGGTCTTGTCCCAG+CGG + chr8_3:45166973-45166992 None:intergenic 55.0%
TTCACCCGGTCATTTGCAGC+AGG + chr8_3:45167058-45167077 None:intergenic 55.0%
! CTATGACGGTCTTGTCCCAG+CGG + chr8_3:45166973-45166992 None:intergenic 55.0%
TTCACCCGGTCATTTGCAGC+AGG + chr8_3:45167058-45167077 None:intergenic 55.0%
AGGTTGCAACTTCGCGGTTC+TGG - chr8_3:45168970-45168989 Msa1290450:intron 55.0%
! TTGCAACTTCGCGGTTCTGG+TGG - chr8_3:45168973-45168992 Msa1290450:intron 55.0%
TAACCAGGCTTCCAGTCCGC+TGG - chr8_3:45166954-45166973 Msa1290450:intron 60.0%
AACCAGGCTTCCAGTCCGCT+GGG - chr8_3:45166955-45166974 Msa1290450:intron 60.0%
TAACCAGGCTTCCAGTCCGC+TGG - chr8_3:45166954-45166973 Msa1290450:intron 60.0%
AACCAGGCTTCCAGTCCGCT+GGG - chr8_3:45166955-45166974 Msa1290450:intron 60.0%
CACCTCCTCCAGATCAGACG+AGG - chr8_3:45169345-45169364 Msa1290450:CDS 60.0%
GTCCTCGTCTGATCTGGAGG+AGG + chr8_3:45169350-45169369 None:intergenic 60.0%
CGAGTCCTCGTCTGATCTGG+AGG + chr8_3:45169353-45169372 None:intergenic 60.0%
! ACGGTCTTGTCCCAGCGGAC+TGG + chr8_3:45166968-45166987 None:intergenic 65.0%
! ACGGTCTTGTCCCAGCGGAC+TGG + chr8_3:45166968-45166987 None:intergenic 65.0%
!! GTCCCAGCGGACTGGAAGCC+TGG + chr8_3:45166960-45166979 None:intergenic 70.0%
!! GTCCCAGCGGACTGGAAGCC+TGG + chr8_3:45166960-45166979 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 45163704 45169470 45163704 ID=Msa1290450;Name=Msa1290450
chr8_3 mRNA 45163704 45169470 45163704 ID=Msa1290450-mRNA-1;Parent=Msa1290450;Name=Msa1290450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=76|0.5|0.6|1|1|1|5|468|235
chr8_3 exon 45163704 45164222 45163704 ID=Msa1290450-mRNA-1:exon:12453;Parent=Msa1290450-mRNA-1
chr8_3 exon 45165060 45165183 45165060 ID=Msa1290450-mRNA-1:exon:12452;Parent=Msa1290450-mRNA-1
chr8_3 exon 45166073 45166213 45166073 ID=Msa1290450-mRNA-1:exon:12451;Parent=Msa1290450-mRNA-1
chr8_3 exon 45168526 45168606 45168526 ID=Msa1290450-mRNA-1:exon:12450;Parent=Msa1290450-mRNA-1
chr8_3 exon 45169084 45169470 45169084 ID=Msa1290450-mRNA-1:exon:12449;Parent=Msa1290450-mRNA-1
chr8_3 five_prime_UTR 45169395 45169470 45169395 ID=Msa1290450-mRNA-1:five_prime_utr;Parent=Msa1290450-mRNA-1
chr8_3 CDS 45169084 45169394 45169084 ID=Msa1290450-mRNA-1:cds;Parent=Msa1290450-mRNA-1
chr8_3 CDS 45168526 45168606 45168526 ID=Msa1290450-mRNA-1:cds;Parent=Msa1290450-mRNA-1
chr8_3 CDS 45166073 45166213 45166073 ID=Msa1290450-mRNA-1:cds;Parent=Msa1290450-mRNA-1
chr8_3 CDS 45165060 45165183 45165060 ID=Msa1290450-mRNA-1:cds;Parent=Msa1290450-mRNA-1
chr8_3 CDS 45164172 45164222 45164172 ID=Msa1290450-mRNA-1:cds;Parent=Msa1290450-mRNA-1
chr8_3 three_prime_UTR 45163704 45164171 45163704 ID=Msa1290450-mRNA-1:three_prime_utr;Parent=Msa1290450-mRNA-1
Gene Sequence

>Msa1290450

ATGGCGATGACGATGGAAAGTGGCAGCAGCAACAACAACAACGGAGATGAGTTTGCGGTGGGTTGTTTCCTTTCGATCAGGACAACGTTAGGTGATGAATTTGAAGGTCAAGTTGTTACCTTTGATCGTGATTCCAACTACCTCGTACTTCAAGAAGGTTCCAAACATGGTCCTCGTCGAAATATTAGGCTTTTGAAAGCTGATTATATCAAAGATTTCACCTTTTTAGGTCAAGGTCAAGACCCACTTGATCCAAATCATTGTCTTCTTGATATTAATGCTCTTCAATCTAGGGAAGAACTTGCAATTAGACAAGCTGAAGCAGATGCTGAGAGGATTGGGGTTGGTGTTACAAGTGAAGCACAGAACATCTTTGATGCATTATCTAAAACGCTTCCAGTCCGCTGGGACAAGACCGTCATAGTTGTGATGAATGAGGTGCGCGTCAGCAGTCCTTATAACTCTGAATGTGTGATTGGTGGTACTCCTGCTGCAAATGACCGGGTGAAGAAAGTGGTAAACATTTTTCTTTTGCTTCCAGTCCGCTGGGACAAGACCGTCATAGTTGTGATGAATGAGGTGCGCGTCAGCAGTCCTTATAACTCTGAATGTGTGATTGGTGGTACTCCTGCTGCAAATGACCGGGTGAAGAAAGTGCTTGAGTTCGAGAGGAAGAGGTTGCAACTTCGCGGTTCTGGTGGTCAATAG

Protein sequence

>Msa1290450

MAMTMESGSSNNNNGDEFAVGCFLSIRTTLGDEFEGQVVTFDRDSNYLVLQEGSKHGPRRNIRLLKADYIKDFTFLGQGQDPLDPNHCLLDINALQSREELAIRQAEADAERIGVGVTSEAQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPYNSECVIGGTPAANDRVKKVVNIFLLLPVRWDKTVIVVMNEVRVSSPYNSECVIGGTPAANDRVKKVLEFERKRLQLRGSGGQ*