AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194900 MtrunA17_Chr2g0286031 90.602 681 20 4 132 780 16 684 0.0 1253
Msa0194900 MtrunA17_Chr8g0356081 57.381 779 247 7 1 779 1 694 0.0 865
Msa0194900 MtrunA17_Chr4g0063141 62.218 487 179 3 16 500 11 494 0.0 622
Msa0194900 MtrunA17_Chr4g0063141 25.914 301 172 9 511 772 582 870 8.84e-14 75.5
Msa0194900 MtrunA17_Chr2g0277651 41.396 831 391 17 16 776 25 829 0.0 578
Msa0194900 MtrunA17_Chr1g0148981 48.976 537 211 6 24 500 23 556 2.15e-168 512
Msa0194900 MtrunA17_Chr3g0138671 47.529 526 270 5 29 549 21 545 1.25e-158 474
Msa0194900 MtrunA17_Chr3g0138131 54.220 391 173 3 34 421 46 433 1.73e-143 430
Msa0194900 MtrunA17_Chr5g0434371 35.174 489 303 6 16 495 46 529 2.31e-94 313
Msa0194900 MtrunA17_Chr2g0286041 99.237 131 1 0 1 131 1 131 6.61e-87 270
Msa0194900 MtrunA17_Chr4g0063071 31.897 232 151 3 273 500 5 233 1.66e-31 124
Msa0194900 MtrunA17_Chr4g0062571 31.507 219 136 5 82 299 2 207 9.80e-22 94.7
Msa0194900 MtrunA17_Chr4g0062561 31.858 226 131 7 82 299 2 212 1.29e-20 97.4
Msa0194900 MtrunA17_Chr4g0063081 32.979 188 119 4 68 251 8 192 1.17e-18 85.1
Msa0194900 MtrunA17_Chr4g0009161 56.338 71 29 2 430 500 12 80 4.36e-15 75.5
Msa0194900 MtrunA17_Chr3g0138141 57.143 70 22 3 702 770 385 447 1.58e-12 70.5
Msa0194900 MtrunA17_Chr3g0138141 42.529 87 48 1 435 519 12 98 5.37e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194900 AT5G46240.1 71.571 503 142 1 1 503 1 502 0.0 788
Msa0194900 AT5G46240.1 50.538 93 37 2 681 770 588 674 1.21e-17 88.2
Msa0194900 AT4G18290.2 65.324 571 190 3 1 564 12 581 0.0 771
Msa0194900 AT4G18290.1 65.324 571 190 3 1 564 1 570 0.0 770
Msa0194900 AT4G32500.1 44.070 860 353 21 21 771 37 877 0.0 642
Msa0194900 AT2G25600.1 42.526 863 349 17 29 770 48 884 0.0 632
Msa0194900 AT2G26650.1 61.680 488 178 4 16 500 13 494 0.0 621
Msa0194900 AT2G26650.1 29.046 241 131 11 554 768 625 851 3.53e-13 73.9
Msa0194900 AT4G22200.1 40.886 790 393 21 29 775 43 801 0.0 548
Msa0194900 AT2G26650.2 63.544 395 136 3 108 500 1 389 1.28e-172 515
Msa0194900 AT2G26650.2 28.926 242 132 11 554 769 520 747 4.64e-13 73.6
Msa0194900 AT4G22200.2 51.975 481 225 5 29 505 43 521 4.79e-172 508
Msa0194900 AT4G32650.1 42.626 617 326 11 29 630 55 658 8.51e-141 430
Msa0194900 AT4G32650.2 49.372 478 231 6 29 499 55 528 3.66e-140 426
Msa0194900 AT4G32650.3 49.372 478 231 6 29 499 55 528 5.32e-140 428
Msa0194900 AT3G02850.1 30.390 770 473 19 48 770 71 824 7.01e-104 338
Msa0194900 AT3G02850.3 36.383 470 278 8 48 502 71 534 7.56e-99 318
Msa0194900 AT3G02850.2 33.953 592 338 15 48 624 71 624 9.05e-98 320
Msa0194900 AT5G37500.1 29.253 776 491 22 49 777 55 819 2.06e-97 321
Msa0194900 AT5G37500.4 36.481 466 278 8 49 505 55 511 3.34e-92 304
Msa0194900 AT5G37500.2 36.481 466 278 8 49 505 55 511 1.98e-91 305
Msa0194900 AT5G37500.3 35.965 456 274 8 59 505 11 457 6.46e-88 295
Msa0194900 AT2G23980.6 19.676 432 257 10 94 444 131 553 6.22e-14 76.3
Msa0194900 AT2G23980.9 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194900 AT2G23980.10 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194900 AT2G23980.1 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194900 AT2G23980.4 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194900 AT2G23980.5 19.676 432 257 10 94 444 158 580 6.50e-14 76.3

Find 155 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTTGTTCTTTAAAATT+TGG 0.068175 2_1:+11349048 None:intergenic
TGAAAGTACTTACAAAATTT+TGG 0.084247 2_1:+11348836 None:intergenic
ACCGTCCTGTTTACTGTTTC+GGG 0.161405 2_1:+11346958 None:intergenic
TTCTTAACATGTTGCGATTA+TGG 0.172049 2_1:-11349456 Msa0194900:CDS
TGTGTCCACCCTATGGTATT+TGG 0.174885 2_1:+11347115 None:intergenic
GACATTTATGTACTGGTTTC+AGG 0.188389 2_1:-11348024 Msa0194900:CDS
TCCTCAGGTATCATGTTATT+AGG 0.219587 2_1:+11347235 None:intergenic
AGCACCTATCCAAGTTCTTT+TGG 0.225780 2_1:+11349077 None:intergenic
TACCGTCCTGTTTACTGTTT+CGG 0.226231 2_1:+11346957 None:intergenic
ATATCTTAATTACCATTAAA+AGG 0.234087 2_1:+11347572 None:intergenic
TGGTGTTTCTTGTTCTATTT+AGG 0.240551 2_1:+11350538 None:intergenic
GTTCTCTCCTTCATGCATTA+AGG 0.253490 2_1:+11347318 None:intergenic
GACTTTGTTCTTTAAAATTT+GGG 0.262231 2_1:+11349049 None:intergenic
TTCTATTTAGGTTGTTCTAA+TGG 0.265035 2_1:+11350550 None:intergenic
GGTGATCATCTCTTTCTTAT+TGG 0.265317 2_1:-11346397 Msa0194900:CDS
TTGCCTGTAAAACATTCATT+AGG 0.266733 2_1:+11347626 None:intergenic
AAAACTTCTTCCAGAGGTTC+TGG 0.278730 2_1:-11350107 Msa0194900:CDS
ACATTCGCTTCAATTACTTC+TGG 0.279463 2_1:-11349281 Msa0194900:CDS
ATTCATGAGGTAGAATTCTA+TGG 0.298267 2_1:+11350211 None:intergenic
CATGTCCACCTGGTTTGTTT+TGG 0.299573 2_1:-11349554 Msa0194900:CDS
ACAATCAAAATTTCTTGAAT+TGG 0.300844 2_1:+11346892 None:intergenic
ATGGATTGTTACCCTCTTCT+TGG 0.304577 2_1:+11346841 None:intergenic
GTGTCCACCCTATGGTATTT+GGG 0.305489 2_1:+11347116 None:intergenic
GGTTGTTCTAATGGTGGTTT+TGG 0.308517 2_1:+11350559 None:intergenic
GTCTGGTTTCCTGGTTTGTT+CGG 0.314225 2_1:+11350010 None:intergenic
TGAAAGTCTGGCTATAAATA+TGG 0.322702 2_1:-11350240 Msa0194900:five_prime_UTR
TGCTGTGCTGCCTGTGCATA+AGG 0.326896 2_1:-11347191 Msa0194900:CDS
CTATATCTGACAGAGATTAA+AGG 0.329489 2_1:-11347461 Msa0194900:intron
TGCTTTCACAATACATTGTA+TGG 0.333962 2_1:+11347050 None:intergenic
TGCAGTATCACATCTTCCTT+TGG 0.337846 2_1:+11348063 None:intergenic
ATCCTTAACTTTGGCAAGAA+TGG 0.340508 2_1:-11346986 Msa0194900:CDS
TCTGGTTTCCTGGTTTGTTC+GGG 0.349964 2_1:+11350011 None:intergenic
AGCAGCTCTTCTAATGAATC+AGG 0.350428 2_1:+11346761 None:intergenic
CACTTACATGCTGTTCAACT+TGG 0.353116 2_1:-11348920 Msa0194900:CDS
TTTCTGACGTATAAGCAAAA+TGG 0.358263 2_1:-11349799 Msa0194900:CDS
GTGGAAGCATTTGGAGAGAT+TGG 0.359303 2_1:-11347727 Msa0194900:CDS
TATAATTTATTACAGGCTTT+GGG 0.364885 2_1:-11349881 Msa0194900:intron
TGCCTGTAAAACATTCATTA+GGG 0.373671 2_1:+11347627 None:intergenic
GCTTCAATTACTTCTGGGTT+AGG 0.376145 2_1:-11349275 Msa0194900:CDS
CCTCAGGTATCATGTTATTA+GGG 0.384210 2_1:+11347236 None:intergenic
GAGGTTCTGGTTGGACGAAA+TGG 0.387098 2_1:-11350094 Msa0194900:CDS
GATATCAAATAACATCTCTA+TGG 0.391859 2_1:+11348942 None:intergenic
GGTTTAACAGCATACATCAT+TGG 0.392948 2_1:-11348898 Msa0194900:CDS
ATGCTTGACCGAATCGCCTT+TGG 0.394681 2_1:+11348320 None:intergenic
GAAGAGCTGCTCAAAATTGC+TGG 0.396916 2_1:-11346749 Msa0194900:intron
AGCCATTCTTGCCAAAGTTA+AGG 0.398518 2_1:+11346984 None:intergenic
CTGGTTGGACGAAATGGAAA+TGG 0.400490 2_1:-11350088 Msa0194900:CDS
ATCACAATCTGTGCATCTCC+TGG 0.408539 2_1:+11347601 None:intergenic
TCTGTGTACACTTTCTCTAA+TGG 0.409182 2_1:+11346917 None:intergenic
CATTCGCTTCAATTACTTCT+GGG 0.411241 2_1:-11349280 Msa0194900:CDS
CACCTATACTGAGGATTGAA+TGG 0.411860 2_1:+11349967 None:intergenic
AATCTCGTTCACTGCATTGA+TGG 0.422427 2_1:-11347889 Msa0194900:CDS
GCAACTGCAGTGGAAGCATT+TGG 0.423214 2_1:-11347736 Msa0194900:CDS
AATGATATAGGTTTCAGAAA+TGG 0.426448 2_1:-11348103 Msa0194900:intron
TTGCCAAAGTTAAGGATTTG+TGG 0.428936 2_1:+11346992 None:intergenic
AGTAGTGAAGAGGAGACTAA+TGG 0.429345 2_1:+11349504 None:intergenic
ACCTATACTGAGGATTGAAT+GGG 0.438329 2_1:+11349968 None:intergenic
GATACGTAACTTCAATATAC+TGG 0.441167 2_1:-11349017 Msa0194900:CDS
CTTGCCATTTCTATGTCACT+TGG 0.444479 2_1:+11346869 None:intergenic
TCCTACAGACATTTATGTAC+TGG 0.448321 2_1:-11348031 Msa0194900:CDS
GTCAGAAAGGCAAACTCAAA+GGG 0.457107 2_1:+11349814 None:intergenic
GAGCCACAAATCCTTAACTT+TGG 0.459120 2_1:-11346995 Msa0194900:CDS
TTCTAGTCATATACTCAGCT+TGG 0.460135 2_1:-11349843 Msa0194900:CDS
GCTGTGCTGCCTGTGCATAA+GGG 0.463710 2_1:-11347190 Msa0194900:CDS
GCTATGTTTCAGACTCGAAA+AGG 0.469567 2_1:-11349304 Msa0194900:intron
ATAATAGACAACATTGTCAA+TGG 0.473596 2_1:-11349769 Msa0194900:CDS
ATGATCTTCCAAAGGCGATT+CGG 0.475082 2_1:-11348328 Msa0194900:CDS
GGAAGTCATTGGAGACTCCT+TGG 0.475455 2_1:+11348252 None:intergenic
TTCTCCATCCACTTGGCGAA+TGG 0.477586 2_1:+11346822 None:intergenic
ACTACTTATGACAGTGAGCT+TGG 0.480046 2_1:-11349487 Msa0194900:CDS
CTCAACCCGAAACAGTAAAC+AGG 0.480735 2_1:-11346963 Msa0194900:CDS
AGTGATCTTCTACCATCTCT+TGG 0.481192 2_1:-11350036 Msa0194900:CDS
GTAGTGAAGAGGAGACTAAT+GGG 0.481646 2_1:+11349505 None:intergenic
TTGTCCAAGTGACATAGAAA+TGG 0.483298 2_1:-11346873 Msa0194900:CDS
GAATATCCACACACAGATCA+TGG 0.487220 2_1:-11347418 Msa0194900:CDS
TGTTGGCACACATTTGTTTG+AGG 0.487645 2_1:-11348388 Msa0194900:CDS
ACAGAGAACTGACTCGTCTC+AGG 0.489086 2_1:+11349431 None:intergenic
TTTCGTCCAACCAGAACCTC+TGG 0.495129 2_1:+11350097 None:intergenic
TTCCTTTGGTGGGAAATACT+CGG 0.496198 2_1:+11348077 None:intergenic
AGTATCACATCTTCCTTTGG+TGG 0.498761 2_1:+11348066 None:intergenic
AGGTAGACCTTCTGCACGAC+AGG 0.500630 2_1:+11348278 None:intergenic
CTTCTTCCAGAGGTTCTGGT+TGG 0.501625 2_1:-11350103 Msa0194900:CDS
CCCCATTCAATCCTCAGTAT+AGG 0.503381 2_1:-11349969 Msa0194900:intron
GATCATCTCTTTCTTATTGG+CGG 0.505634 2_1:-11346394 Msa0194900:CDS
ACCCTGATTCCAAAAGAACT+TGG 0.507181 2_1:-11349086 Msa0194900:CDS
TGACTAACCTTGTAGTTCAC+TGG 0.508132 2_1:-11348870 Msa0194900:CDS
CTCCTTCATGCATTAAGGAA+TGG 0.509079 2_1:+11347323 None:intergenic
TATTTAGGTTGTTCTAATGG+TGG 0.509646 2_1:+11350553 None:intergenic
GAGGTAGAATTCTATGGACT+TGG 0.511960 2_1:+11350217 None:intergenic
CAATCCATTCGCCAAGTGGA+TGG 0.515545 2_1:-11346826 Msa0194900:CDS
ATCTCGTTCACTGCATTGAT+GGG 0.518997 2_1:-11347888 Msa0194900:CDS
TTGGTTCTATATAAATTGCT+AGG 0.520308 2_1:-11347394 Msa0194900:CDS
TTGTTTGCAGTGCACTGTGC+AGG 0.521813 2_1:-11349138 Msa0194900:CDS
TTTGTTCGGGCGCCAAGAGA+TGG 0.523096 2_1:+11350024 None:intergenic
ATCGTCACGCTTACTACCAC+TGG 0.523432 2_1:-11348991 Msa0194900:CDS
CGTCAGAAAGGCAAACTCAA+AGG 0.525022 2_1:+11349813 None:intergenic
CTGTGCTGCCTGTGCATAAG+GGG 0.526246 2_1:-11347189 Msa0194900:CDS
CACTGTCATAAGTAGTGAAG+AGG 0.536117 2_1:+11349494 None:intergenic
CAGTTGGAAAAGGAAGTCAT+TGG 0.537816 2_1:+11348241 None:intergenic
ACTTACATGCTGTTCAACTT+GGG 0.543072 2_1:-11348919 Msa0194900:CDS
TCTGTAGTTCGAACTGTGAA+AGG 0.543170 2_1:+11347682 None:intergenic
TCTAGTTTCCCCTTATGCAC+AGG 0.544175 2_1:+11347181 None:intergenic
GAGTCAGTTCTCTGTTTGCA+AGG 0.546900 2_1:-11349423 Msa0194900:intron
GGGGTATTACCAGTTGGAAA+AGG 0.546901 2_1:+11348231 None:intergenic
TGGTTGGACGAAATGGAAAT+GGG 0.547226 2_1:-11350087 Msa0194900:CDS
GACATTGATGTCATTAGAGA+TGG 0.549773 2_1:-11346418 Msa0194900:CDS
TGCACAGTGCACTGCAAACA+AGG 0.552915 2_1:+11349140 None:intergenic
ACGCTTACTACCACTGGCTA+TGG 0.553126 2_1:-11348985 Msa0194900:CDS
GCACAGAACCCAAATACCAT+AGG 0.553388 2_1:-11347124 Msa0194900:CDS
GAACGTAAGCACGATGTCGA+TGG 0.554490 2_1:+11349738 None:intergenic
CATGTAGTTACATGTCCACC+TGG 0.555978 2_1:-11349564 Msa0194900:intron
AATCCTCAAAGCTTCAAAAG+AGG 0.556400 2_1:+11350168 None:intergenic
TCTTGGCGCCCGAACAAACC+AGG 0.556962 2_1:-11350019 Msa0194900:CDS
GTATCACATCTTCCTTTGGT+GGG 0.558039 2_1:+11348067 None:intergenic
TGTTTGAGGTTTAAAACAGA+AGG 0.561867 2_1:-11348374 Msa0194900:CDS
GGGTACAAAGAAGCTGCAAA+TGG 0.566698 2_1:+11350518 None:intergenic
CATTGGAGACTCCTTGGAAG+AGG 0.567411 2_1:+11348258 None:intergenic
GGCCATTCCTTAATGCATGA+AGG 0.576044 2_1:-11347325 Msa0194900:CDS
AGGAGACTAATGGGCTCAAG+TGG 0.586925 2_1:+11349514 None:intergenic
GAGTCTACAAATAATTTACA+TGG 0.590590 2_1:-11347346 Msa0194900:CDS
CAGAAGGTCTACCTCTTCCA+AGG 0.591913 2_1:-11348269 Msa0194900:CDS
GCACAGGCAGCACAGCAGCA+TGG 0.592390 2_1:+11347197 None:intergenic
CACAGAACCCAAATACCATA+GGG 0.592525 2_1:-11347123 Msa0194900:CDS
GGCAAGGTTCACCAAGAAGA+GGG 0.593694 2_1:-11346852 Msa0194900:CDS
TCCACACACAGATCATGGAT+TGG 0.597717 2_1:-11347413 Msa0194900:CDS
GATTCCAAAAGAACTTGGAT+AGG 0.601551 2_1:-11349081 Msa0194900:CDS
GGATGGAGAAGTAGCTCACA+TGG 0.605702 2_1:-11346809 Msa0194900:CDS
AGCATTAAATGATCTTCCAA+AGG 0.608942 2_1:-11348336 Msa0194900:CDS
GAGCTACTTCTCCATCCACT+TGG 0.609891 2_1:+11346815 None:intergenic
AGCCGAGTATTTCCCACCAA+AGG 0.611493 2_1:-11348079 Msa0194900:CDS
TGGCAAGGTTCACCAAGAAG+AGG 0.615773 2_1:-11346853 Msa0194900:CDS
TCGCGTACACAATCAAATGT+TGG 0.618917 2_1:-11348405 Msa0194900:CDS
CAGAGATTAAAGGAGCGTGA+AGG 0.621845 2_1:-11347451 Msa0194900:CDS
ATTTGATTGTGTACGCGACG+TGG 0.622706 2_1:+11348410 None:intergenic
TGTACTGGTTTCAGGCGCAG+TGG 0.622748 2_1:-11348016 Msa0194900:intron
GTTCGAACTGTGAAAGGCTG+TGG 0.623207 2_1:+11347688 None:intergenic
GACTGGTCCAGTGAACTACA+AGG 0.630276 2_1:+11348863 None:intergenic
AGTAGCTCACATGGACAGCA+CGG 0.633141 2_1:-11346800 Msa0194900:CDS
CAAGTGACATAGAAATGGCA+AGG 0.635277 2_1:-11346868 Msa0194900:CDS
AATAACATGATACCTGAGGA+TGG 0.636817 2_1:-11347232 Msa0194900:CDS
ATCCAAAGAAAATTGCAACC+AGG 0.642767 2_1:-11349672 Msa0194900:intron
ACCAGTACATAAATGTCTGT+AGG 0.647308 2_1:+11348030 None:intergenic
GCTCTTCTAATGAATCAGGT+AGG 0.648781 2_1:+11346765 None:intergenic
GTAACAATCCATTCGCCAAG+TGG 0.651845 2_1:-11346830 Msa0194900:CDS
CCCTAATAACATGATACCTG+AGG 0.670461 2_1:-11347236 Msa0194900:CDS
ACCAATCCATGATCTGTGTG+TGG 0.672562 2_1:+11347412 None:intergenic
GCAGATATCCAAAACAAACC+AGG 0.680140 2_1:+11349546 None:intergenic
AGAACCCAAATACCATAGGG+TGG 0.680575 2_1:-11347120 Msa0194900:CDS
ATGTAAATCTCCATAGCCAG+TGG 0.680944 2_1:+11348975 None:intergenic
TCAGAAAGGCAAACTCAAAG+GGG 0.689808 2_1:+11349815 None:intergenic
CCTATACTGAGGATTGAATG+GGG 0.693402 2_1:+11349969 None:intergenic
ACCCGAAACAGTAAACAGGA+CGG 0.696148 2_1:-11346959 Msa0194900:CDS
AAAGGTCATCACCTATACTG+AGG 0.699640 2_1:+11349958 None:intergenic
GAAGAGAAGAATGACTATCG+TGG 0.704476 2_1:+11349704 None:intergenic
GATATCCAAAACAAACCAGG+TGG 0.711945 2_1:+11349549 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCATAAAAATAAAAAAG+GGG + chr2_1:11350307-11350326 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:11350284-11350303 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:11350284-11350303 None:intergenic 100.0%
!! AAATTAAGTTTATAAATGAG+TGG + chr2_1:11346589-11346608 None:intergenic 15.0%
!! TTTCATGTATAATTTATTAC+AGG - chr2_1:11347039-11347058 Msa0194900:CDS 15.0%
!! TATAAAATTATTATAGCATG+TGG + chr2_1:11348159-11348178 None:intergenic 15.0%
!!! ATTTTATATTATACATGTGT+TGG - chr2_1:11348171-11348190 Msa0194900:intron 15.0%
!! AATAAAATAAAAAGACATGT+GGG + chr2_1:11348719-11348738 None:intergenic 15.0%
!! AAATAAAATAAAAAGACATG+TGG + chr2_1:11348720-11348739 None:intergenic 15.0%
!! ATATCTTAATTACCATTAAA+AGG + chr2_1:11349358-11349377 None:intergenic 15.0%
!! TTATATTTATCAATCATAGT+AGG - chr2_1:11349419-11349438 Msa0194900:intron 15.0%
!! AATCATAAAAATAAAAAAGG+GGG + chr2_1:11350306-11350325 None:intergenic 15.0%
!!! CTCTTTATTAATTATTTTTG+TGG + chr2_1:11350474-11350493 None:intergenic 15.0%
!! TATAATTTATTACAGGCTTT+GGG - chr2_1:11347046-11347065 Msa0194900:CDS 20.0%
!! TTATATCTATATATATCACC+TGG + chr2_1:11347276-11347295 None:intergenic 20.0%
!! AGAAATTTGAAAAGTAAGTA+GGG + chr2_1:11347337-11347356 None:intergenic 20.0%
!! TAGAAATTTGAAAAGTAAGT+AGG + chr2_1:11347338-11347357 None:intergenic 20.0%
!!! GACTTTGTTCTTTAAAATTT+GGG + chr2_1:11347881-11347900 None:intergenic 20.0%
!!! AGACTTTGTTCTTTAAAATT+TGG + chr2_1:11347882-11347901 None:intergenic 20.0%
!!! ATTTTAAAGAACAAAGTCTT+TGG - chr2_1:11347883-11347902 Msa0194900:CDS 20.0%
!!! TTTTAAAGAACAAAGTCTTT+GGG - chr2_1:11347884-11347903 Msa0194900:CDS 20.0%
!!! GAAAGTACTTACAAAATTTT+GGG + chr2_1:11348093-11348112 None:intergenic 20.0%
!!! TGAAAGTACTTACAAAATTT+TGG + chr2_1:11348094-11348113 None:intergenic 20.0%
!! ATAAAATAAAAAGACATGTG+GGG + chr2_1:11348718-11348737 None:intergenic 20.0%
!!! CATTCTTTAAGATTCATTTA+TGG + chr2_1:11348968-11348987 None:intergenic 20.0%
!! ACAATCAAAATTTCTTGAAT+TGG + chr2_1:11350038-11350057 None:intergenic 20.0%
!! ATCATAAAAATAAAAAAGGG+GGG + chr2_1:11350305-11350324 None:intergenic 20.0%
!!! TATTTTTATGATTTTTGCTG+AGG - chr2_1:11350313-11350332 Msa0194900:intron 20.0%
!!! ATTTTTATGATTTTTGCTGA+GGG - chr2_1:11350314-11350333 Msa0194900:intron 20.0%
!!! TTCTATTTAGGTTGTTCTAA+TGG + chr2_1:11346380-11346399 None:intergenic 25.0%
!!! ATTTTTGGATTTCAAAGAGA+GGG + chr2_1:11346432-11346451 None:intergenic 25.0%
!! GATTTTCTTACATATGCATT+TGG + chr2_1:11346459-11346478 None:intergenic 25.0%
!!! TCTTTTATTTCAGCTTTACA+AGG - chr2_1:11346643-11346662 Msa0194900:intron 25.0%
!!! GTTAAGTTTTTCAATTCATG+AGG + chr2_1:11346732-11346751 None:intergenic 25.0%
!! TATTATGTATTTTCGTAGTC+TGG + chr2_1:11346937-11346956 None:intergenic 25.0%
! AAGAATTGTGACTATGTAAA+AGG + chr2_1:11346990-11347009 None:intergenic 25.0%
! GTATAATTTATTACAGGCTT+TGG - chr2_1:11347045-11347064 Msa0194900:CDS 25.0%
! ATAATAGACAACATTGTCAA+TGG - chr2_1:11347158-11347177 Msa0194900:CDS 25.0%
!!! GACATTCATTTTAGTTTCTA+AGG + chr2_1:11347308-11347327 None:intergenic 25.0%
! TGAAATTAAATTTGACATGC+TGG + chr2_1:11347534-11347553 None:intergenic 25.0%
!! GCATGTCAAATTTAATTTCA+TGG - chr2_1:11347534-11347553 Msa0194900:intron 25.0%
!! CAAATTTAATTTCATGGTTC+TGG - chr2_1:11347540-11347559 Msa0194900:intron 25.0%
! TTGAAATTGTATAGGAAGTA+GGG + chr2_1:11347721-11347740 None:intergenic 25.0%
! TTCCTCTTTCAAAAAATTTC+AGG - chr2_1:11347761-11347780 Msa0194900:intron 25.0%
!!! TACCTGAAATTTTTTGAAAG+AGG + chr2_1:11347766-11347785 None:intergenic 25.0%
! GATATCAAATAACATCTCTA+TGG + chr2_1:11347988-11348007 None:intergenic 25.0%
!!! TAACTTTTTGAACATTGGTT+TGG + chr2_1:11348242-11348261 None:intergenic 25.0%
!! GTAACTAACTTTTTGAACAT+TGG + chr2_1:11348247-11348266 None:intergenic 25.0%
! TAGCTGACAAAAATAACTTA+TGG + chr2_1:11348360-11348379 None:intergenic 25.0%
!! TAATAAGAGAGGATTCATTT+TGG - chr2_1:11348440-11348459 Msa0194900:CDS 25.0%
! TATATCATTAGAGTTACTTG+GGG + chr2_1:11348813-11348832 None:intergenic 25.0%
! CTATATCATTAGAGTTACTT+GGG + chr2_1:11348814-11348833 None:intergenic 25.0%
! AATGATATAGGTTTCAGAAA+TGG - chr2_1:11348824-11348843 Msa0194900:intron 25.0%
! TGAATTGTTAATGTAAGGAT+AGG + chr2_1:11349155-11349174 None:intergenic 25.0%
! TATCCTTACATTAACAATTC+AGG - chr2_1:11349154-11349173 Msa0194900:intron 25.0%
!! TGTGATGAATAACCTTTTAA+TGG - chr2_1:11349343-11349362 Msa0194900:intron 25.0%
!!! TTGGTTCTATATAAATTGCT+AGG - chr2_1:11349533-11349552 Msa0194900:CDS 25.0%
! GAGTCTACAAATAATTTACA+TGG - chr2_1:11349581-11349600 Msa0194900:intron 25.0%
! TCATAAAAATAAAAAAGGGG+GGG + chr2_1:11350304-11350323 None:intergenic 25.0%
!!! CAGATTATTGCATTTGATTT+TGG + chr2_1:11350358-11350377 None:intergenic 25.0%
!! TATTTAGGTTGTTCTAATGG+TGG + chr2_1:11346377-11346396 None:intergenic 30.0%
TGGTGTTTCTTGTTCTATTT+AGG + chr2_1:11346392-11346411 None:intergenic 30.0%
!! CATTTTTGGATTTCAAAGAG+AGG + chr2_1:11346433-11346452 None:intergenic 30.0%
! TATGCATTTGGAGACATTTT+TGG + chr2_1:11346447-11346466 None:intergenic 30.0%
AGAAATAGAAGGAAAGATGA+TGG + chr2_1:11346513-11346532 None:intergenic 30.0%
AAAGCTTGTGAAGAAATAGA+AGG + chr2_1:11346524-11346543 None:intergenic 30.0%
! CTTTATTTGTTGAGACAAAG+TGG - chr2_1:11346540-11346559 Msa0194900:intron 30.0%
ATAAATGAGTGGTAAAAACG+TGG + chr2_1:11346578-11346597 None:intergenic 30.0%
TGAAAGTCTGGCTATAAATA+TGG - chr2_1:11346687-11346706 Msa0194900:intron 30.0%
ATTCATGAGGTAGAATTCTA+TGG + chr2_1:11346719-11346738 None:intergenic 30.0%
! ATTTTGCTTATACGTCAGAA+AGG + chr2_1:11347129-11347148 None:intergenic 30.0%
TTTCTGACGTATAAGCAAAA+TGG - chr2_1:11347128-11347147 Msa0194900:CDS 30.0%
TTCTTAACATGTTGCGATTA+TGG - chr2_1:11347471-11347490 Msa0194900:intron 30.0%
TGAAATTGTATAGGAAGTAG+GGG + chr2_1:11347720-11347739 None:intergenic 30.0%
CTTGAAATTGTATAGGAAGT+AGG + chr2_1:11347722-11347741 None:intergenic 30.0%
CTACTTCCTATACAATTTCA+AGG - chr2_1:11347720-11347739 Msa0194900:CDS 30.0%
GATACGTAACTTCAATATAC+TGG - chr2_1:11347910-11347929 Msa0194900:intron 30.0%
AAATTATTATAGCATGTGGC+TGG + chr2_1:11348155-11348174 None:intergenic 30.0%
!! GTTTGGATAATAGCTTTGAA+GGG + chr2_1:11348225-11348244 None:intergenic 30.0%
GTTAGTTACAAATACAGTGT+AGG - chr2_1:11348258-11348277 Msa0194900:CDS 30.0%
AGATATACTTGACAATTGTG+GGG + chr2_1:11348290-11348309 None:intergenic 30.0%
CAGATATACTTGACAATTGT+GGG + chr2_1:11348291-11348310 None:intergenic 30.0%
TCAGATATACTTGACAATTG+TGG + chr2_1:11348292-11348311 None:intergenic 30.0%
TGAATCCTCTCTTATTAAGA+GGG + chr2_1:11348437-11348456 None:intergenic 30.0%
ATGAATCCTCTCTTATTAAG+AGG + chr2_1:11348438-11348457 None:intergenic 30.0%
! TGTTTGAGGTTTAAAACAGA+AGG - chr2_1:11348553-11348572 Msa0194900:intron 30.0%
AGCATTAAATGATCTTCCAA+AGG - chr2_1:11348591-11348610 Msa0194900:intron 30.0%
CCTATATCATTAGAGTTACT+TGG + chr2_1:11348815-11348834 None:intergenic 30.0%
CCAAGTAACTCTAATGATAT+AGG - chr2_1:11348812-11348831 Msa0194900:intron 30.0%
! ATCCCTAATGAATGTTTTAC+AGG - chr2_1:11349298-11349317 Msa0194900:intron 30.0%
TGCCTGTAAAACATTCATTA+GGG + chr2_1:11349303-11349322 None:intergenic 30.0%
TTGCCTGTAAAACATTCATT+AGG + chr2_1:11349304-11349323 None:intergenic 30.0%
AAAGCTTCTAAACTCAACAT+GGG - chr2_1:11349380-11349399 Msa0194900:intron 30.0%
GATATAGATCACACATGATT+AGG + chr2_1:11349453-11349472 None:intergenic 30.0%
CTATATCTGACAGAGATTAA+AGG - chr2_1:11349466-11349485 Msa0194900:CDS 30.0%
TGCTTTCACAATACATTGTA+TGG + chr2_1:11349880-11349899 None:intergenic 30.0%
ACTAATGTTCCTCAGTTATA+GGG + chr2_1:11350215-11350234 None:intergenic 30.0%
AACTAATGTTCCTCAGTTAT+AGG + chr2_1:11350216-11350235 None:intergenic 30.0%
ATAAAAATAAAAAAGGGGGG+GGG + chr2_1:11350302-11350321 None:intergenic 30.0%
CATAAAAATAAAAAAGGGGG+GGG + chr2_1:11350303-11350322 None:intergenic 30.0%
AAAACTGCAGGTGAAAAATT+TGG - chr2_1:11350437-11350456 Msa0194900:intron 30.0%
!! TAGAAGGAAAGATGATGGAA+TGG + chr2_1:11346508-11346527 None:intergenic 35.0%
! TATTTGTTGAGACAAAGTGG+AGG - chr2_1:11346543-11346562 Msa0194900:intron 35.0%
AAGGACAAGACATGAAAAAG+TGG - chr2_1:11346662-11346681 Msa0194900:intron 35.0%
GAAAAAGTGGTTTGAAAGTC+TGG - chr2_1:11346675-11346694 Msa0194900:intron 35.0%
!!! ATACCTCTTTTGAAGCTTTG+AGG - chr2_1:11346756-11346775 Msa0194900:CDS 35.0%
AATCCTCAAAGCTTCAAAAG+AGG + chr2_1:11346762-11346781 None:intergenic 35.0%
ACCTATACTGAGGATTGAAT+GGG + chr2_1:11346962-11346981 None:intergenic 35.0%
TTCTAGTCATATACTCAGCT+TGG - chr2_1:11347084-11347103 Msa0194900:CDS 35.0%
ATCCAAAGAAAATTGCAACC+AGG - chr2_1:11347255-11347274 Msa0194900:CDS 35.0%
ACATTCGCTTCAATTACTTC+TGG - chr2_1:11347646-11347665 Msa0194900:CDS 35.0%
CATTCGCTTCAATTACTTCT+GGG - chr2_1:11347647-11347666 Msa0194900:CDS 35.0%
GATGTGCCTTGAAATTGTAT+AGG + chr2_1:11347729-11347748 None:intergenic 35.0%
GAAAGAGGAAATTCAGTTCT+TGG + chr2_1:11347751-11347770 None:intergenic 35.0%
!!! TCCAAGTTCTTTTGGAATCA+GGG + chr2_1:11347845-11347864 None:intergenic 35.0%
!!! ATCCAAGTTCTTTTGGAATC+AGG + chr2_1:11347846-11347865 None:intergenic 35.0%
GATTCCAAAAGAACTTGGAT+AGG - chr2_1:11347846-11347865 Msa0194900:intron 35.0%
ACTTACATGCTGTTCAACTT+GGG - chr2_1:11348008-11348027 Msa0194900:intron 35.0%
GGTTTAACAGCATACATCAT+TGG - chr2_1:11348029-11348048 Msa0194900:CDS 35.0%
!! GGTTTGGATAATAGCTTTGA+AGG + chr2_1:11348226-11348245 None:intergenic 35.0%
TACAAATACAGTGTAGGACT+AGG - chr2_1:11348264-11348283 Msa0194900:CDS 35.0%
AACTTAACATGAAACTCGAG+AGG + chr2_1:11348335-11348354 None:intergenic 35.0%
CAAAAACTCGTTCAGATAAG+AGG - chr2_1:11348398-11348417 Msa0194900:CDS 35.0%
TTCTTCCCTCTTAATAAGAG+AGG - chr2_1:11348429-11348448 Msa0194900:CDS 35.0%
!!! TTCACTTTTTGTCTCTTCTC+CGG - chr2_1:11348741-11348760 Msa0194900:intron 35.0%
!!! CTTCTTGCTTTTAACTTAGC+CGG + chr2_1:11348763-11348782 None:intergenic 35.0%
TCCTACAGACATTTATGTAC+TGG - chr2_1:11348896-11348915 Msa0194900:CDS 35.0%
ACCAGTACATAAATGTCTGT+AGG + chr2_1:11348900-11348919 None:intergenic 35.0%
!! GACATTTATGTACTGGTTTC+AGG - chr2_1:11348903-11348922 Msa0194900:CDS 35.0%
CCACCTGAATTGTTAATGTA+AGG + chr2_1:11349160-11349179 None:intergenic 35.0%
CCTTACATTAACAATTCAGG+TGG - chr2_1:11349157-11349176 Msa0194900:intron 35.0%
! AATGTTTTACAGGCAAATCC+AGG - chr2_1:11349308-11349327 Msa0194900:intron 35.0%
CAAAGCTTCTAAACTCAACA+TGG - chr2_1:11349379-11349398 Msa0194900:intron 35.0%
AAGCTTCTAAACTCAACATG+GGG - chr2_1:11349381-11349400 Msa0194900:intron 35.0%
GATCACACATGATTAGGATT+AGG + chr2_1:11349447-11349466 None:intergenic 35.0%
CCTCAGGTATCATGTTATTA+GGG + chr2_1:11349694-11349713 None:intergenic 35.0%
TCCTCAGGTATCATGTTATT+AGG + chr2_1:11349695-11349714 None:intergenic 35.0%
AATAACATGATACCTGAGGA+TGG - chr2_1:11349695-11349714 Msa0194900:CDS 35.0%
TTGCCAAAGTTAAGGATTTG+TGG + chr2_1:11349938-11349957 None:intergenic 35.0%
ATCCTTAACTTTGGCAAGAA+TGG - chr2_1:11349941-11349960 Msa0194900:intron 35.0%
TCTGTGTACACTTTCTCTAA+TGG + chr2_1:11350013-11350032 None:intergenic 35.0%
TTGTCCAAGTGACATAGAAA+TGG - chr2_1:11350054-11350073 Msa0194900:CDS 35.0%
TAAAAATAAAAAAGGGGGGG+GGG + chr2_1:11350301-11350320 None:intergenic 35.0%
! TTATGATTTTTGCTGAGGGA+AGG - chr2_1:11350318-11350337 Msa0194900:intron 35.0%
! TATGATTTTTGCTGAGGGAA+GGG - chr2_1:11350319-11350338 Msa0194900:intron 35.0%
!! CTATTAACTTGCAAAACTGC+AGG - chr2_1:11350425-11350444 Msa0194900:intron 35.0%
GACATTGATGTCATTAGAGA+TGG - chr2_1:11350509-11350528 Msa0194900:five_prime_UTR 35.0%
GGTGATCATCTCTTTCTTAT+TGG - chr2_1:11350530-11350549 Msa0194900:five_prime_UTR 35.0%
GATCATCTCTTTCTTATTGG+CGG - chr2_1:11350533-11350552 Msa0194900:five_prime_UTR 35.0%
ATGAGTGGTAAAAACGTGGA+GGG + chr2_1:11346574-11346593 None:intergenic 40.0%
AATGAGTGGTAAAAACGTGG+AGG + chr2_1:11346575-11346594 None:intergenic 40.0%
GAGGTAGAATTCTATGGACT+TGG + chr2_1:11346713-11346732 None:intergenic 40.0%
!!! CTGGAAGAAGTTTTTGAGAC+TGG + chr2_1:11346814-11346833 None:intergenic 40.0%
GTCTCAAAAACTTCTTCCAG+AGG - chr2_1:11346814-11346833 Msa0194900:CDS 40.0%
AAAACTTCTTCCAGAGGTTC+TGG - chr2_1:11346820-11346839 Msa0194900:CDS 40.0%
TGGTTGGACGAAATGGAAAT+GGG - chr2_1:11346840-11346859 Msa0194900:CDS 40.0%
AGTGATCTTCTACCATCTCT+TGG - chr2_1:11346891-11346910 Msa0194900:CDS 40.0%
!! ATTTTCGTAGTCTGGTTTCC+TGG + chr2_1:11346929-11346948 None:intergenic 40.0%
CCTATACTGAGGATTGAATG+GGG + chr2_1:11346961-11346980 None:intergenic 40.0%
CACCTATACTGAGGATTGAA+TGG + chr2_1:11346963-11346982 None:intergenic 40.0%
AAAGGTCATCACCTATACTG+AGG + chr2_1:11346972-11346991 None:intergenic 40.0%
TCAGAAAGGCAAACTCAAAG+GGG + chr2_1:11347115-11347134 None:intergenic 40.0%
GTCAGAAAGGCAAACTCAAA+GGG + chr2_1:11347116-11347135 None:intergenic 40.0%
GAAGAGAAGAATGACTATCG+TGG + chr2_1:11347226-11347245 None:intergenic 40.0%
! CACCTGGTTGCAATTTTCTT+TGG + chr2_1:11347260-11347279 None:intergenic 40.0%
GATATCCAAAACAAACCAGG+TGG + chr2_1:11347381-11347400 None:intergenic 40.0%
GCAGATATCCAAAACAAACC+AGG + chr2_1:11347384-11347403 None:intergenic 40.0%
GTAGTGAAGAGGAGACTAAT+GGG + chr2_1:11347425-11347444 None:intergenic 40.0%
AGTAGTGAAGAGGAGACTAA+TGG + chr2_1:11347426-11347445 None:intergenic 40.0%
CACTGTCATAAGTAGTGAAG+AGG + chr2_1:11347436-11347455 None:intergenic 40.0%
ACTACTTATGACAGTGAGCT+TGG - chr2_1:11347440-11347459 Msa0194900:CDS 40.0%
! ACATAGCAAAGGTGCAAGTA+AGG + chr2_1:11347610-11347629 None:intergenic 40.0%
! TCGAGTCTGAAACATAGCAA+AGG + chr2_1:11347621-11347640 None:intergenic 40.0%
GCTATGTTTCAGACTCGAAA+AGG - chr2_1:11347623-11347642 Msa0194900:CDS 40.0%
GCTTCAATTACTTCTGGGTT+AGG - chr2_1:11347652-11347671 Msa0194900:CDS 40.0%
GGGGAGTTTATGAGGTTTAA+TGG + chr2_1:11347701-11347720 None:intergenic 40.0%
ACCCTGATTCCAAAAGAACT+TGG - chr2_1:11347841-11347860 Msa0194900:intron 40.0%
! AGCACCTATCCAAGTTCTTT+TGG + chr2_1:11347853-11347872 None:intergenic 40.0%
ATGTAAATCTCCATAGCCAG+TGG + chr2_1:11347955-11347974 None:intergenic 40.0%
CACTTACATGCTGTTCAACT+TGG - chr2_1:11348007-11348026 Msa0194900:intron 40.0%
TGACTAACCTTGTAGTTCAC+TGG - chr2_1:11348057-11348076 Msa0194900:CDS 40.0%
!! TACAAAATTTTGGGTGCGAC+TGG + chr2_1:11348084-11348103 None:intergenic 40.0%
AAACTCGAGAGGATTGTACT+AGG + chr2_1:11348324-11348343 None:intergenic 40.0%
!! AGGATTCATTTTGGTCACAG+AGG - chr2_1:11348449-11348468 Msa0194900:CDS 40.0%
!! GGATTCATTTTGGTCACAGA+GGG - chr2_1:11348450-11348469 Msa0194900:CDS 40.0%
TCGCGTACACAATCAAATGT+TGG - chr2_1:11348522-11348541 Msa0194900:intron 40.0%
TGTTGGCACACATTTGTTTG+AGG - chr2_1:11348539-11348558 Msa0194900:intron 40.0%
ATGATCTTCCAAAGGCGATT+CGG - chr2_1:11348599-11348618 Msa0194900:intron 40.0%
CAGTTGGAAAAGGAAGTCAT+TGG + chr2_1:11348689-11348708 None:intergenic 40.0%
! CAATGACTTCCTTTTCCAAC+TGG - chr2_1:11348687-11348706 Msa0194900:intron 40.0%
GGGTCAGATGTTGAAACTTT+AGG + chr2_1:11348793-11348812 None:intergenic 40.0%
TTCCTTTGGTGGGAAATACT+CGG + chr2_1:11348853-11348872 None:intergenic 40.0%
GTATCACATCTTCCTTTGGT+GGG + chr2_1:11348863-11348882 None:intergenic 40.0%
AGTATCACATCTTCCTTTGG+TGG + chr2_1:11348864-11348883 None:intergenic 40.0%
TGCAGTATCACATCTTCCTT+TGG + chr2_1:11348867-11348886 None:intergenic 40.0%
AATCTCGTTCACTGCATTGA+TGG - chr2_1:11349038-11349057 Msa0194900:CDS 40.0%
! ATCTCGTTCACTGCATTGAT+GGG - chr2_1:11349039-11349058 Msa0194900:CDS 40.0%
! TTTTGACAAAGCAACTGCAG+TGG - chr2_1:11349181-11349200 Msa0194900:intron 40.0%
TCTGTAGTTCGAACTGTGAA+AGG + chr2_1:11349248-11349267 None:intergenic 40.0%
GAATATCCACACACAGATCA+TGG - chr2_1:11349509-11349528 Msa0194900:CDS 40.0%
CTCCTTCATGCATTAAGGAA+TGG + chr2_1:11349607-11349626 None:intergenic 40.0%
GTTCTCTCCTTCATGCATTA+AGG + chr2_1:11349612-11349631 None:intergenic 40.0%
CCCTAATAACATGATACCTG+AGG - chr2_1:11349691-11349710 Msa0194900:CDS 40.0%
CACAGAACCCAAATACCATA+GGG - chr2_1:11349804-11349823 Msa0194900:CDS 40.0%
GAGCCACAAATCCTTAACTT+TGG - chr2_1:11349932-11349951 Msa0194900:intron 40.0%
AGCCATTCTTGCCAAAGTTA+AGG + chr2_1:11349946-11349965 None:intergenic 40.0%
TACCGTCCTGTTTACTGTTT+CGG + chr2_1:11349973-11349992 None:intergenic 40.0%
! CTTGCCATTTCTATGTCACT+TGG + chr2_1:11350061-11350080 None:intergenic 40.0%
CAAGTGACATAGAAATGGCA+AGG - chr2_1:11350059-11350078 Msa0194900:CDS 40.0%
! ATGGATTGTTACCCTCTTCT+TGG + chr2_1:11350089-11350108 None:intergenic 40.0%
GCTCTTCTAATGAATCAGGT+AGG + chr2_1:11350165-11350184 None:intergenic 40.0%
AGCAGCTCTTCTAATGAATC+AGG + chr2_1:11350169-11350188 None:intergenic 40.0%
! AGCATTGAACCCTATAACTG+AGG - chr2_1:11350203-11350222 Msa0194900:five_prime_UTR 40.0%
AAAAATAAAAAAGGGGGGGG+GGG + chr2_1:11350300-11350319 None:intergenic 40.0%
ACTGCAGGTGAAAAATTTGG+CGG - chr2_1:11350440-11350459 Msa0194900:intron 40.0%
GGGTACAAAGAAGCTGCAAA+TGG + chr2_1:11346412-11346431 None:intergenic 45.0%
GAATGGTAGAGTCTTGCTAG+TGG + chr2_1:11346491-11346510 None:intergenic 45.0%
CTGGTTGGACGAAATGGAAA+TGG - chr2_1:11346839-11346858 Msa0194900:CDS 45.0%
!! TCTGGTTTCCTGGTTTGTTC+GGG + chr2_1:11346919-11346938 None:intergenic 45.0%
!! GTCTGGTTTCCTGGTTTGTT+CGG + chr2_1:11346920-11346939 None:intergenic 45.0%
CCCCATTCAATCCTCAGTAT+AGG - chr2_1:11346958-11346977 Msa0194900:CDS 45.0%
CGTCAGAAAGGCAAACTCAA+AGG + chr2_1:11347117-11347136 None:intergenic 45.0%
CATGTAGTTACATGTCCACC+TGG - chr2_1:11347363-11347382 Msa0194900:CDS 45.0%
!!! CATGTCCACCTGGTTTGTTT+TGG - chr2_1:11347373-11347392 Msa0194900:CDS 45.0%
GAGTCAGTTCTCTGTTTGCA+AGG - chr2_1:11347504-11347523 Msa0194900:intron 45.0%
! GCAAGTAAGGAAGAAAGCAC+TGG + chr2_1:11347597-11347616 None:intergenic 45.0%
AGGAAGTAGGGGAGTTTATG+AGG + chr2_1:11347709-11347728 None:intergenic 45.0%
ATTTGATTGTGTACGCGACG+TGG + chr2_1:11348520-11348539 None:intergenic 45.0%
GCACGACAGGAAAAAAGAGA+TGG + chr2_1:11348639-11348658 None:intergenic 45.0%
!!! CTTTTTTCCTGTCGTGCAGA+AGG - chr2_1:11348642-11348661 Msa0194900:intron 45.0%
! GGGGTATTACCAGTTGGAAA+AGG + chr2_1:11348699-11348718 None:intergenic 45.0%
! ACATGTGGGGTATTACCAGT+TGG + chr2_1:11348705-11348724 None:intergenic 45.0%
!! GTGGAAGCATTTGGAGAGAT+TGG - chr2_1:11349200-11349219 Msa0194900:intron 45.0%
ATCACAATCTGTGCATCTCC+TGG + chr2_1:11349329-11349348 None:intergenic 45.0%
! CAGAGATTAAAGGAGCGTGA+AGG - chr2_1:11349476-11349495 Msa0194900:CDS 45.0%
TCCACACACAGATCATGGAT+TGG - chr2_1:11349514-11349533 Msa0194900:CDS 45.0%
ACCAATCCATGATCTGTGTG+TGG + chr2_1:11349518-11349537 None:intergenic 45.0%
GGCCATTCCTTAATGCATGA+AGG - chr2_1:11349602-11349621 Msa0194900:intron 45.0%
! AGATCTCTTTTGCCATCCTC+AGG + chr2_1:11349710-11349729 None:intergenic 45.0%
! TCTAGTTTCCCCTTATGCAC+AGG + chr2_1:11349749-11349768 None:intergenic 45.0%
GCACAGAACCCAAATACCAT+AGG - chr2_1:11349803-11349822 Msa0194900:CDS 45.0%
AGAACCCAAATACCATAGGG+TGG - chr2_1:11349807-11349826 Msa0194900:CDS 45.0%
GTGTCCACCCTATGGTATTT+GGG + chr2_1:11349814-11349833 None:intergenic 45.0%
TGTGTCCACCCTATGGTATT+TGG + chr2_1:11349815-11349834 None:intergenic 45.0%
! AGCTTTTTGTGTCCACCCTA+TGG + chr2_1:11349822-11349841 None:intergenic 45.0%
CTCAACCCGAAACAGTAAAC+AGG - chr2_1:11349964-11349983 Msa0194900:intron 45.0%
ACCCGAAACAGTAAACAGGA+CGG - chr2_1:11349968-11349987 Msa0194900:intron 45.0%
ACCGTCCTGTTTACTGTTTC+GGG + chr2_1:11349972-11349991 None:intergenic 45.0%
GTAACAATCCATTCGCCAAG+TGG - chr2_1:11350097-11350116 Msa0194900:CDS 45.0%
GAAGAGCTGCTCAAAATTGC+TGG - chr2_1:11350178-11350197 Msa0194900:five_prime_UTR 45.0%
AAAATAAAAAAGGGGGGGGG+GGG + chr2_1:11350299-11350318 None:intergenic 45.0%
!! AAAATCATAAAAATAAAAAA+GGG + chr2_1:11350308-11350327 None:intergenic 5.0%
!! AAAAATCATAAAAATAAAAA+AGG + chr2_1:11350309-11350328 None:intergenic 5.0%
! CTTCTTCCAGAGGTTCTGGT+TGG - chr2_1:11346824-11346843 Msa0194900:CDS 50.0%
TTTCGTCCAACCAGAACCTC+TGG + chr2_1:11346833-11346852 None:intergenic 50.0%
! GAGGTTCTGGTTGGACGAAA+TGG - chr2_1:11346833-11346852 Msa0194900:CDS 50.0%
GAACGTAAGCACGATGTCGA+TGG + chr2_1:11347192-11347211 None:intergenic 50.0%
!! AGGAGACTAATGGGCTCAAG+TGG + chr2_1:11347416-11347435 None:intergenic 50.0%
!! ACAGAGAACTGACTCGTCTC+AGG + chr2_1:11347499-11347518 None:intergenic 50.0%
TGCACAGTGCACTGCAAACA+AGG + chr2_1:11347790-11347809 None:intergenic 50.0%
TTGTTTGCAGTGCACTGTGC+AGG - chr2_1:11347789-11347808 Msa0194900:intron 50.0%
ATCGTCACGCTTACTACCAC+TGG - chr2_1:11347936-11347955 Msa0194900:intron 50.0%
! ACGCTTACTACCACTGGCTA+TGG - chr2_1:11347942-11347961 Msa0194900:intron 50.0%
! GACTGGTCCAGTGAACTACA+AGG + chr2_1:11348067-11348086 None:intergenic 50.0%
TTATAGCATGTGGCTGGCAC+AGG + chr2_1:11348149-11348168 None:intergenic 50.0%
ATGCTTGACCGAATCGCCTT+TGG + chr2_1:11348610-11348629 None:intergenic 50.0%
CAGAAGGTCTACCTCTTCCA+AGG - chr2_1:11348658-11348677 Msa0194900:intron 50.0%
CATTGGAGACTCCTTGGAAG+AGG + chr2_1:11348672-11348691 None:intergenic 50.0%
GGAAGTCATTGGAGACTCCT+TGG + chr2_1:11348678-11348697 None:intergenic 50.0%
AGCCGAGTATTTCCCACCAA+AGG - chr2_1:11348848-11348867 Msa0194900:intron 50.0%
! GTGGTGAGTTGGCTAAAGCA+TGG - chr2_1:11348930-11348949 Msa0194900:CDS 50.0%
!! GCAACTGCAGTGGAAGCATT+TGG - chr2_1:11349191-11349210 Msa0194900:intron 50.0%
GTTCGAACTGTGAAAGGCTG+TGG + chr2_1:11349242-11349261 None:intergenic 50.0%
TGGCAAGGTTCACCAAGAAG+AGG - chr2_1:11350074-11350093 Msa0194900:CDS 50.0%
GGCAAGGTTCACCAAGAAGA+GGG - chr2_1:11350075-11350094 Msa0194900:CDS 50.0%
CAATCCATTCGCCAAGTGGA+TGG - chr2_1:11350101-11350120 Msa0194900:CDS 50.0%
TTCTCCATCCACTTGGCGAA+TGG + chr2_1:11350108-11350127 None:intergenic 50.0%
GAGCTACTTCTCCATCCACT+TGG + chr2_1:11350115-11350134 None:intergenic 50.0%
GGATGGAGAAGTAGCTCACA+TGG - chr2_1:11350118-11350137 Msa0194900:CDS 50.0%
AGTAGCTCACATGGACAGCA+CGG - chr2_1:11350127-11350146 Msa0194900:CDS 50.0%
CATACACACACGTGTGAGGA+TGG - chr2_1:11350241-11350260 Msa0194900:five_prime_UTR 50.0%
CACGTGTGAGGATGGAAAGA+TGG - chr2_1:11350249-11350268 Msa0194900:five_prime_UTR 50.0%
AAATAAAAAAGGGGGGGGGG+GGG + chr2_1:11350298-11350317 None:intergenic 50.0%
TTTGTTCGGGCGCCAAGAGA+TGG + chr2_1:11346906-11346925 None:intergenic 55.0%
AGGTAGACCTTCTGCACGAC+AGG + chr2_1:11348652-11348671 None:intergenic 55.0%
!! TGTACTGGTTTCAGGCGCAG+TGG - chr2_1:11348911-11348930 Msa0194900:CDS 55.0%
TTTCAGGCGCAGTGGTGAGT+TGG - chr2_1:11348919-11348938 Msa0194900:CDS 55.0%
TGCTGTGCTGCCTGTGCATA+AGG - chr2_1:11349736-11349755 Msa0194900:CDS 55.0%
GCTGTGCTGCCTGTGCATAA+GGG - chr2_1:11349737-11349756 Msa0194900:CDS 55.0%
CTGTGCTGCCTGTGCATAAG+GGG - chr2_1:11349738-11349757 Msa0194900:CDS 55.0%
GACGCATACACACACGTGTG+AGG - chr2_1:11350237-11350256 Msa0194900:five_prime_UTR 55.0%
AATAAAAAAGGGGGGGGGGG+GGG + chr2_1:11350297-11350316 None:intergenic 55.0%
TCTTGGCGCCCGAACAAACC+AGG - chr2_1:11346908-11346927 Msa0194900:CDS 60.0%
ATAAAAAAGGGGGGGGGGGG+GGG + chr2_1:11350296-11350315 None:intergenic 60.0%
GCACAGGCAGCACAGCAGCA+TGG + chr2_1:11349733-11349752 None:intergenic 65.0%
TAAAAAAGGGGGGGGGGGGG+GGG + chr2_1:11350295-11350314 None:intergenic 65.0%
AAAAAAGGGGGGGGGGGGGG+GGG + chr2_1:11350294-11350313 None:intergenic 70.0%
AAAAAGGGGGGGGGGGGGGG+GGG + chr2_1:11350293-11350312 None:intergenic 75.0%
! AAAAGGGGGGGGGGGGGGGG+GGG + chr2_1:11350292-11350311 None:intergenic 80.0%
! AAAGGGGGGGGGGGGGGGGG+GGG + chr2_1:11350291-11350310 None:intergenic 85.0%
! AAGGGGGGGGGGGGGGGGGG+GGG + chr2_1:11350290-11350309 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr2_1:11350289-11350308 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11346369 11350580 11346369 ID=Msa0194900;Name=Msa0194900
chr2_1 mRNA 11346369 11350580 11346369 ID=Msa0194900-mRNA-1;Parent=Msa0194900;Name=Msa0194900-mRNA-1;_AED=0.14;_eAED=0.14;_QI=244|0.45|0.33|1|0.90|0.83|12|0|780
chr2_1 exon 11346369 11346502 11346369 ID=Msa0194900-mRNA-1:exon:5054;Parent=Msa0194900-mRNA-1
chr2_1 exon 11346750 11347470 11346750 ID=Msa0194900-mRNA-1:exon:5053;Parent=Msa0194900-mRNA-1
chr2_1 exon 11347585 11347773 11347585 ID=Msa0194900-mRNA-1:exon:5052;Parent=Msa0194900-mRNA-1
chr2_1 exon 11347879 11347911 11347879 ID=Msa0194900-mRNA-1:exon:5051;Parent=Msa0194900-mRNA-1
chr2_1 exon 11348017 11348115 11348017 ID=Msa0194900-mRNA-1:exon:5050;Parent=Msa0194900-mRNA-1
chr2_1 exon 11348241 11348480 11348241 ID=Msa0194900-mRNA-1:exon:5049;Parent=Msa0194900-mRNA-1
chr2_1 exon 11348849 11349166 11348849 ID=Msa0194900-mRNA-1:exon:5048;Parent=Msa0194900-mRNA-1
chr2_1 exon 11349257 11349314 11349257 ID=Msa0194900-mRNA-1:exon:5047;Parent=Msa0194900-mRNA-1
chr2_1 exon 11349424 11349579 11349424 ID=Msa0194900-mRNA-1:exon:5046;Parent=Msa0194900-mRNA-1
chr2_1 exon 11349673 11349888 11349673 ID=Msa0194900-mRNA-1:exon:5045;Parent=Msa0194900-mRNA-1
chr2_1 exon 11349970 11350293 11349970 ID=Msa0194900-mRNA-1:exon:5044;Parent=Msa0194900-mRNA-1
chr2_1 exon 11350482 11350580 11350482 ID=Msa0194900-mRNA-1:exon:5043;Parent=Msa0194900-mRNA-1
chr2_1 five_prime_UTR 11350482 11350580 11350482 ID=Msa0194900-mRNA-1:five_prime_utr;Parent=Msa0194900-mRNA-1
chr2_1 five_prime_UTR 11350149 11350293 11350149 ID=Msa0194900-mRNA-1:five_prime_utr;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11349970 11350148 11349970 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11349673 11349888 11349673 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11349424 11349579 11349424 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11349257 11349314 11349257 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11348849 11349166 11348849 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11348241 11348480 11348241 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11348017 11348115 11348017 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11347879 11347911 11347879 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11347585 11347773 11347585 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11346750 11347470 11346750 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
chr2_1 CDS 11346369 11346502 11346369 ID=Msa0194900-mRNA-1:cds;Parent=Msa0194900-mRNA-1
Gene Sequence

>Msa0194900

ATGTCATTTTCCAGTCTCAAAAACTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCCCGAACAAACCAGGAAACCAGACTACGAAAATACATAATATCCCCATTCAATCCTCAGTATAGGCTTTGGGAGTTGTTACTGATTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACGTATAAGCAAAATGGACTATTCATAATAGACAACATTGTCAATGGCTTCTTTGCCATCGACATCGTGCTTACGTTCTTCGTTGCATACCACGATAGTCATTCTTCTCTTCTCATTGATGATCCAAAGAAAATTGCAACCAGTTACATGTCCACCTGGTTTGTTTTGGATATCTGCTCAACAGCACCACTTGAGCCCATTAGTCTCCTCTTCACTACTTATGACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTACTTCTGGGTTAGGTGTACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTACTTGCAGATATGTACCCTGATTCCAAAAGAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAACAAAGTCTTTGGGACAGATACGTAACTTCAATATACTGGTCTATCGTCACGCTTACTACCACTGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGTTATTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACAGCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCAAAATTTTAGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACGTCGCGTACACAATCAAATGTTGGCACACATTTGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCGATTCGGTCAAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCAATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCCGAGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACATTTATGTACTGGTTTCAGGCGCAGTGAATCTCGTTCACTGCATTGATGGGAATGATCAAGTGGTTTTTGACAAAGCAACTGCAGTGGAAGCATTTGGAGAGATTGGAGTTTTATATAATGTACCACAGCCTTTCACAGTTCGAACTACAGAGCTTTCTCAGATTTTAAGAATCAACAGAACATCCCTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAGATTGTGATGAATAACCTTTTAATGAGATTAAAGGAGCGTGAAGGATTCGACTCTGAATATCCACACACAGATCATGGATTGGTTCTATATAAATTGCTAGGTAACACAAAAGAAAGCTCTTCTCAAGAGTCTACAAATAATTTACATGGCCATTCCTTAATGCATGAAGGAGAGAACATAAATATCAGAGACTCACAGAATAATTTGCATATTGTGACTAATGATGTTTATTCAGACCCTAATAACATGATACCTGAGGATGGCAAAAGAGATCTCCATGCTGCTGTGCTGCCTGTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGATTGAAAGAGATGCAAAAGCACAGAACCCAAATACCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCACTTCTGACCATACAATGTATTGTGAAAGCAAAAAATCAGATGAACATAGAATAGAGATTGTTGAGCCACAAATCCTTAACTTTGGCAAGAATGGCTCAACCCGAAACAGTAAACAGGACGGTATTAGAAATATCAACTTTCCATTAGAGAAAGTGTACACAGACACCAATTCAAGAAATTTTGATTGTCCAAGTGACATAGAAATGGCAAGGTTCACCAAGAAGAGGGTAACAATCCATTCGCCAAGTGGATGGAGAAGTAGCTCACATGGACAGCACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAATGCCACAAAAATAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTAGAGATGGTGATCATCTCTTTCTTATTGGCGGTGATATTGACAATTTGAACTCATGA
Protein sequence

>Msa0194900

MSFSSLKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGARTNQETRLRKYIISPFNPQYRLWELLLIVLVIYSAWICPFEFAFLTYKQNGLFIIDNIVNGFFAIDIVLTFFVAYHDSHSSLLIDDPKKIATSYMSTWFVLDICSTAPLEPISLLFTTYDSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCFNYLLADMYPDSKRTWIGAMYPNFKEQSLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTAYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPRRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSNDFLFQLVSEMEAEYFPPKEDVILQNESPTDIYVLVSGAVNLVHCIDGNDQVVFDKATAVEAFGEIGVLYNVPQPFTVRTTELSQILRINRTSLMNVLQANPGDAQIVMNNLLMRLKEREGFDSEYPHTDHGLVLYKLLGNTKESSSQESTNNLHGHSLMHEGENINIRDSQNNLHIVTNDVYSDPNNMIPEDGKRDLHAAVLPVHKGKLDIVEILIERDAKAQNPNTIGWTQKALVQQLKNKSTSDHTMYCESKKSDEHRIEIVEPQILNFGKNGSTRNSKQDGIRNINFPLEKVYTDTNSRNFDCPSDIEMARFTKKRVTIHSPSGWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNATKIINKENAEIDDIDVIRDGDHLFLIGGDIDNLNS*