AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354210 MtrunA17_Chr2g0286031 90.602 681 20 4 132 780 16 684 0.0 1253
Msa1354210 MtrunA17_Chr8g0356081 57.381 779 247 7 1 779 1 694 0.0 865
Msa1354210 MtrunA17_Chr4g0063141 62.218 487 179 3 16 500 11 494 0.0 622
Msa1354210 MtrunA17_Chr4g0063141 25.914 301 172 9 511 772 582 870 8.84e-14 75.5
Msa1354210 MtrunA17_Chr2g0277651 41.396 831 391 17 16 776 25 829 0.0 578
Msa1354210 MtrunA17_Chr1g0148981 48.976 537 211 6 24 500 23 556 2.15e-168 512
Msa1354210 MtrunA17_Chr3g0138671 47.529 526 270 5 29 549 21 545 1.25e-158 474
Msa1354210 MtrunA17_Chr3g0138131 54.220 391 173 3 34 421 46 433 1.73e-143 430
Msa1354210 MtrunA17_Chr5g0434371 35.174 489 303 6 16 495 46 529 2.31e-94 313
Msa1354210 MtrunA17_Chr2g0286041 99.237 131 1 0 1 131 1 131 6.61e-87 270
Msa1354210 MtrunA17_Chr4g0063071 31.897 232 151 3 273 500 5 233 1.66e-31 124
Msa1354210 MtrunA17_Chr4g0062571 31.507 219 136 5 82 299 2 207 9.80e-22 94.7
Msa1354210 MtrunA17_Chr4g0062561 31.858 226 131 7 82 299 2 212 1.29e-20 97.4
Msa1354210 MtrunA17_Chr4g0063081 32.979 188 119 4 68 251 8 192 1.17e-18 85.1
Msa1354210 MtrunA17_Chr4g0009161 56.338 71 29 2 430 500 12 80 4.36e-15 75.5
Msa1354210 MtrunA17_Chr3g0138141 57.143 70 22 3 702 770 385 447 1.58e-12 70.5
Msa1354210 MtrunA17_Chr3g0138141 42.529 87 48 1 435 519 12 98 5.37e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354210 AT5G46240.1 71.571 503 142 1 1 503 1 502 0.0 788
Msa1354210 AT5G46240.1 50.538 93 37 2 681 770 588 674 1.21e-17 88.2
Msa1354210 AT4G18290.2 65.324 571 190 3 1 564 12 581 0.0 771
Msa1354210 AT4G18290.1 65.324 571 190 3 1 564 1 570 0.0 770
Msa1354210 AT4G32500.1 44.070 860 353 21 21 771 37 877 0.0 642
Msa1354210 AT2G25600.1 42.526 863 349 17 29 770 48 884 0.0 632
Msa1354210 AT2G26650.1 61.680 488 178 4 16 500 13 494 0.0 621
Msa1354210 AT2G26650.1 29.046 241 131 11 554 768 625 851 3.53e-13 73.9
Msa1354210 AT4G22200.1 40.886 790 393 21 29 775 43 801 0.0 548
Msa1354210 AT2G26650.2 63.544 395 136 3 108 500 1 389 1.28e-172 515
Msa1354210 AT2G26650.2 28.926 242 132 11 554 769 520 747 4.64e-13 73.6
Msa1354210 AT4G22200.2 51.975 481 225 5 29 505 43 521 4.79e-172 508
Msa1354210 AT4G32650.1 42.626 617 326 11 29 630 55 658 8.51e-141 430
Msa1354210 AT4G32650.2 49.372 478 231 6 29 499 55 528 3.66e-140 426
Msa1354210 AT4G32650.3 49.372 478 231 6 29 499 55 528 5.32e-140 428
Msa1354210 AT3G02850.1 30.390 770 473 19 48 770 71 824 7.01e-104 338
Msa1354210 AT3G02850.3 36.383 470 278 8 48 502 71 534 7.56e-99 318
Msa1354210 AT3G02850.2 33.953 592 338 15 48 624 71 624 9.05e-98 320
Msa1354210 AT5G37500.1 29.253 776 491 22 49 777 55 819 2.06e-97 321
Msa1354210 AT5G37500.4 36.481 466 278 8 49 505 55 511 3.34e-92 304
Msa1354210 AT5G37500.2 36.481 466 278 8 49 505 55 511 1.98e-91 305
Msa1354210 AT5G37500.3 35.965 456 274 8 59 505 11 457 6.46e-88 295
Msa1354210 AT2G23980.6 19.676 432 257 10 94 444 131 553 6.22e-14 76.3
Msa1354210 AT2G23980.9 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa1354210 AT2G23980.10 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa1354210 AT2G23980.1 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa1354210 AT2G23980.4 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa1354210 AT2G23980.5 19.676 432 257 10 94 444 158 580 6.50e-14 76.3

Find 155 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTTGTTCTTTAAAATT+TGG 0.068175 tig0014446:+14162 None:intergenic
TGAAAGTACTTACAAAATTT+TGG 0.084247 tig0014446:+13950 None:intergenic
ACCGTCCTGTTTACTGTTTC+GGG 0.161405 tig0014446:+12072 None:intergenic
TTCTTAACATGTTGCGATTA+TGG 0.172049 tig0014446:-14570 Msa1354210:CDS
TGTGTCCACCCTATGGTATT+TGG 0.174885 tig0014446:+12229 None:intergenic
GACATTTATGTACTGGTTTC+AGG 0.188389 tig0014446:-13138 Msa1354210:CDS
TCCTCAGGTATCATGTTATT+AGG 0.219587 tig0014446:+12349 None:intergenic
AGCACCTATCCAAGTTCTTT+TGG 0.225780 tig0014446:+14191 None:intergenic
TACCGTCCTGTTTACTGTTT+CGG 0.226231 tig0014446:+12071 None:intergenic
ATATCTTAATTACCATTAAA+AGG 0.234087 tig0014446:+12686 None:intergenic
TGGTGTTTCTTGTTCTATTT+AGG 0.240551 tig0014446:+15662 None:intergenic
GTTCTCTCCTTCATGCATTA+AGG 0.253490 tig0014446:+12432 None:intergenic
GACTTTGTTCTTTAAAATTT+GGG 0.262231 tig0014446:+14163 None:intergenic
TTCTATTTAGGTTGTTCTAA+TGG 0.265035 tig0014446:+15674 None:intergenic
GGTGATCATCTCTTTCTTAT+TGG 0.265317 tig0014446:-11511 Msa1354210:CDS
TTGCCTGTAAAACATTCATT+AGG 0.266733 tig0014446:+12740 None:intergenic
ACATTCGCTTCAATTACTTC+TGG 0.279463 tig0014446:-14395 Msa1354210:CDS
AAAACTTCTTCCAGAGGTTC+TGG 0.295107 tig0014446:-15231 Msa1354210:CDS
ATTCATGAGGTAGAATTCTA+TGG 0.298267 tig0014446:+15335 None:intergenic
CATGTCCACCTGGTTTGTTT+TGG 0.299573 tig0014446:-14668 Msa1354210:CDS
ACAATCAAAATTTCTTGAAT+TGG 0.300844 tig0014446:+12006 None:intergenic
ATGGATTGTTACCCTCTTCT+TGG 0.304577 tig0014446:+11955 None:intergenic
GTGTCCACCCTATGGTATTT+GGG 0.305489 tig0014446:+12230 None:intergenic
GGTTGTTCTAATGGTGGTTT+TGG 0.308517 tig0014446:+15683 None:intergenic
GTCTGGTTTCCTGGTTTGTT+CGG 0.314225 tig0014446:+15134 None:intergenic
TGAAAGTCTGGCTATAAATA+TGG 0.322702 tig0014446:-15364 Msa1354210:five_prime_UTR
TGCTGTGCTGCCTGTGCATA+AGG 0.326896 tig0014446:-12305 Msa1354210:CDS
CTATATCTGACAGAGATTAA+AGG 0.329489 tig0014446:-12575 Msa1354210:intron
TGCTTTCACAATACATTGTA+TGG 0.333962 tig0014446:+12164 None:intergenic
TGCAGTATCACATCTTCCTT+TGG 0.337846 tig0014446:+13177 None:intergenic
ATCCTTAACTTTGGCAAGAA+TGG 0.340508 tig0014446:-12100 Msa1354210:CDS
TCTGGTTTCCTGGTTTGTTC+GGG 0.349964 tig0014446:+15135 None:intergenic
AGCAGCTCTTCTAATGAATC+AGG 0.350428 tig0014446:+11875 None:intergenic
CACTTACATGCTGTTCAACT+TGG 0.353116 tig0014446:-14034 Msa1354210:CDS
TTTCTGACGTATAAGCAAAA+TGG 0.358263 tig0014446:-14913 Msa1354210:CDS
GTGGAAGCATTTGGAGAGAT+TGG 0.359303 tig0014446:-12841 Msa1354210:CDS
TATAATTTATTACAGGCTTT+GGG 0.364885 tig0014446:-14995 Msa1354210:intron
TGCCTGTAAAACATTCATTA+GGG 0.373671 tig0014446:+12741 None:intergenic
GCTTCAATTACTTCTGGGTT+AGG 0.376145 tig0014446:-14389 Msa1354210:CDS
CCTCAGGTATCATGTTATTA+GGG 0.384210 tig0014446:+12350 None:intergenic
GAGGTTCTGGTTGGACGAAA+TGG 0.387098 tig0014446:-15218 Msa1354210:CDS
GATATCAAATAACATCTCTA+TGG 0.391859 tig0014446:+14056 None:intergenic
GGTTTAACAGCATACATCAT+TGG 0.392948 tig0014446:-14012 Msa1354210:CDS
ATGCTTGACCGAATCGCCTT+TGG 0.394681 tig0014446:+13434 None:intergenic
GAAGAGCTGCTCAAAATTGC+TGG 0.396916 tig0014446:-11863 Msa1354210:intron
AGCCATTCTTGCCAAAGTTA+AGG 0.398518 tig0014446:+12098 None:intergenic
CTGGTTGGACGAAATGGAAA+TGG 0.400490 tig0014446:-15212 Msa1354210:CDS
ATCACAATCTGTGCATCTCC+TGG 0.408539 tig0014446:+12715 None:intergenic
TCTGTGTACACTTTCTCTAA+TGG 0.409182 tig0014446:+12031 None:intergenic
CATTCGCTTCAATTACTTCT+GGG 0.411241 tig0014446:-14394 Msa1354210:CDS
CACCTATACTGAGGATTGAA+TGG 0.411860 tig0014446:+15091 None:intergenic
AATCTCGTTCACTGCATTGA+TGG 0.422427 tig0014446:-13003 Msa1354210:CDS
GCAACTGCAGTGGAAGCATT+TGG 0.423214 tig0014446:-12850 Msa1354210:CDS
AATGATATAGGTTTCAGAAA+TGG 0.426448 tig0014446:-13217 Msa1354210:intron
TTGCCAAAGTTAAGGATTTG+TGG 0.428936 tig0014446:+12106 None:intergenic
AGTAGTGAAGAGGAGACTAA+TGG 0.429345 tig0014446:+14618 None:intergenic
ACCTATACTGAGGATTGAAT+GGG 0.438329 tig0014446:+15092 None:intergenic
GATACGTAACTTCAATATAC+TGG 0.441167 tig0014446:-14131 Msa1354210:CDS
CTTGCCATTTCTATGTCACT+TGG 0.444479 tig0014446:+11983 None:intergenic
TCCTACAGACATTTATGTAC+TGG 0.448321 tig0014446:-13145 Msa1354210:CDS
GTCAGAAAGGCAAACTCAAA+GGG 0.457107 tig0014446:+14928 None:intergenic
GAGCCACAAATCCTTAACTT+TGG 0.459120 tig0014446:-12109 Msa1354210:CDS
TTCTAGTCATATACTCAGCT+TGG 0.460135 tig0014446:-14957 Msa1354210:CDS
GCTGTGCTGCCTGTGCATAA+GGG 0.463710 tig0014446:-12304 Msa1354210:CDS
GCTATGTTTCAGACTCGAAA+AGG 0.469567 tig0014446:-14418 Msa1354210:intron
ATAATAGACAACATTGTCAA+TGG 0.473596 tig0014446:-14883 Msa1354210:CDS
ATGATCTTCCAAAGGCGATT+CGG 0.475082 tig0014446:-13442 Msa1354210:CDS
GGAAGTCATTGGAGACTCCT+TGG 0.475455 tig0014446:+13366 None:intergenic
TTCTCCATCCACTTGGCGAA+TGG 0.477586 tig0014446:+11936 None:intergenic
ACTACTTATGACAGTGAGCT+TGG 0.480046 tig0014446:-14601 Msa1354210:CDS
CTCAACCCGAAACAGTAAAC+AGG 0.480735 tig0014446:-12077 Msa1354210:CDS
AGTGATCTTCTACCATCTCT+TGG 0.481192 tig0014446:-15160 Msa1354210:CDS
GTAGTGAAGAGGAGACTAAT+GGG 0.481646 tig0014446:+14619 None:intergenic
TTGTCCAAGTGACATAGAAA+TGG 0.483298 tig0014446:-11987 Msa1354210:CDS
GAATATCCACACACAGATCA+TGG 0.487220 tig0014446:-12532 Msa1354210:CDS
TGTTGGCACACATTTGTTTG+AGG 0.487645 tig0014446:-13502 Msa1354210:CDS
ACAGAGAACTGACTCGTCTC+AGG 0.489086 tig0014446:+14545 None:intergenic
TTTCGTCCAACCAGAACCTC+TGG 0.495129 tig0014446:+15221 None:intergenic
TTCCTTTGGTGGGAAATACT+CGG 0.496198 tig0014446:+13191 None:intergenic
AGTATCACATCTTCCTTTGG+TGG 0.498761 tig0014446:+13180 None:intergenic
AGGTAGACCTTCTGCACGAC+AGG 0.500630 tig0014446:+13392 None:intergenic
CTTCTTCCAGAGGTTCTGGT+TGG 0.501625 tig0014446:-15227 Msa1354210:CDS
CCCCATTCAATCCTCAGTAT+AGG 0.503381 tig0014446:-15093 Msa1354210:intron
GATCATCTCTTTCTTATTGG+CGG 0.505634 tig0014446:-11508 Msa1354210:CDS
ACCCTGATTCCAAAAGAACT+TGG 0.507181 tig0014446:-14200 Msa1354210:CDS
TGACTAACCTTGTAGTTCAC+TGG 0.508132 tig0014446:-13984 Msa1354210:CDS
CTCCTTCATGCATTAAGGAA+TGG 0.509079 tig0014446:+12437 None:intergenic
TATTTAGGTTGTTCTAATGG+TGG 0.509646 tig0014446:+15677 None:intergenic
GAGGTAGAATTCTATGGACT+TGG 0.511960 tig0014446:+15341 None:intergenic
CAATCCATTCGCCAAGTGGA+TGG 0.515545 tig0014446:-11940 Msa1354210:CDS
ATCTCGTTCACTGCATTGAT+GGG 0.518997 tig0014446:-13002 Msa1354210:CDS
TTGGTTCTATATAAATTGCT+AGG 0.520308 tig0014446:-12508 Msa1354210:CDS
TTGTTTGCAGTGCACTGTGC+AGG 0.521813 tig0014446:-14252 Msa1354210:CDS
TTTGTTCGGGCGCCAAGAGA+TGG 0.523096 tig0014446:+15148 None:intergenic
ATCGTCACGCTTACTACCAC+TGG 0.523432 tig0014446:-14105 Msa1354210:CDS
CGTCAGAAAGGCAAACTCAA+AGG 0.525022 tig0014446:+14927 None:intergenic
CTGTGCTGCCTGTGCATAAG+GGG 0.526246 tig0014446:-12303 Msa1354210:CDS
CACTGTCATAAGTAGTGAAG+AGG 0.536117 tig0014446:+14608 None:intergenic
CAGTTGGAAAAGGAAGTCAT+TGG 0.537816 tig0014446:+13355 None:intergenic
ACTTACATGCTGTTCAACTT+GGG 0.543072 tig0014446:-14033 Msa1354210:CDS
TCTGTAGTTCGAACTGTGAA+AGG 0.543170 tig0014446:+12796 None:intergenic
TCTAGTTTCCCCTTATGCAC+AGG 0.544175 tig0014446:+12295 None:intergenic
GAGTCAGTTCTCTGTTTGCA+AGG 0.546900 tig0014446:-14537 Msa1354210:intron
GGGGTATTACCAGTTGGAAA+AGG 0.546901 tig0014446:+13345 None:intergenic
TGGTTGGACGAAATGGAAAT+GGG 0.547226 tig0014446:-15211 Msa1354210:CDS
GACATTGATGTCATTAGAGA+TGG 0.549773 tig0014446:-11532 Msa1354210:CDS
TGCACAGTGCACTGCAAACA+AGG 0.552915 tig0014446:+14254 None:intergenic
ACGCTTACTACCACTGGCTA+TGG 0.553126 tig0014446:-14099 Msa1354210:CDS
GCACAGAACCCAAATACCAT+AGG 0.553388 tig0014446:-12238 Msa1354210:CDS
GAACGTAAGCACGATGTCGA+TGG 0.554490 tig0014446:+14852 None:intergenic
CATGTAGTTACATGTCCACC+TGG 0.555978 tig0014446:-14678 Msa1354210:intron
AATCCTCAAAGCTTCAAAAG+AGG 0.556400 tig0014446:+15292 None:intergenic
TCTTGGCGCCCGAACAAACC+AGG 0.556962 tig0014446:-15143 Msa1354210:CDS
GTATCACATCTTCCTTTGGT+GGG 0.558039 tig0014446:+13181 None:intergenic
TGTTTGAGGTTTAAAACAGA+AGG 0.561867 tig0014446:-13488 Msa1354210:CDS
GGGTACAAAGAAGCTGCAAA+TGG 0.566698 tig0014446:+15642 None:intergenic
CATTGGAGACTCCTTGGAAG+AGG 0.567411 tig0014446:+13372 None:intergenic
GGCCATTCCTTAATGCATGA+AGG 0.576044 tig0014446:-12439 Msa1354210:CDS
AGGAGACTAATGGGCTCAAG+TGG 0.586925 tig0014446:+14628 None:intergenic
GAGTCTACAAATAATTTACA+TGG 0.590590 tig0014446:-12460 Msa1354210:CDS
CAGAAGGTCTACCTCTTCCA+AGG 0.591913 tig0014446:-13383 Msa1354210:CDS
GCACAGGCAGCACAGCAGCA+TGG 0.592390 tig0014446:+12311 None:intergenic
CACAGAACCCAAATACCATA+GGG 0.592525 tig0014446:-12237 Msa1354210:CDS
GGCAAGGTTCACCAAGAAGA+GGG 0.593694 tig0014446:-11966 Msa1354210:CDS
TCCACACACAGATCATGGAT+TGG 0.597717 tig0014446:-12527 Msa1354210:CDS
GATTCCAAAAGAACTTGGAT+AGG 0.601551 tig0014446:-14195 Msa1354210:CDS
GGATGGAGAAGTAGCTCACA+TGG 0.605702 tig0014446:-11923 Msa1354210:CDS
AGCATTAAATGATCTTCCAA+AGG 0.608942 tig0014446:-13450 Msa1354210:CDS
GAGCTACTTCTCCATCCACT+TGG 0.609891 tig0014446:+11929 None:intergenic
AGCCGAGTATTTCCCACCAA+AGG 0.611493 tig0014446:-13193 Msa1354210:CDS
TGGCAAGGTTCACCAAGAAG+AGG 0.615773 tig0014446:-11967 Msa1354210:CDS
TCGCGTACACAATCAAATGT+TGG 0.618917 tig0014446:-13519 Msa1354210:CDS
CAGAGATTAAAGGAGCGTGA+AGG 0.621845 tig0014446:-12565 Msa1354210:CDS
ATTTGATTGTGTACGCGACG+TGG 0.622706 tig0014446:+13524 None:intergenic
TGTACTGGTTTCAGGCGCAG+TGG 0.622748 tig0014446:-13130 Msa1354210:intron
GTTCGAACTGTGAAAGGCTG+TGG 0.623207 tig0014446:+12802 None:intergenic
GACTGGTCCAGTGAACTACA+AGG 0.630276 tig0014446:+13977 None:intergenic
AGTAGCTCACATGGACAGCA+CGG 0.633141 tig0014446:-11914 Msa1354210:CDS
CAAGTGACATAGAAATGGCA+AGG 0.635277 tig0014446:-11982 Msa1354210:CDS
AATAACATGATACCTGAGGA+TGG 0.636817 tig0014446:-12346 Msa1354210:CDS
ATCCAAAGAAAATTGCAACC+AGG 0.642767 tig0014446:-14786 Msa1354210:intron
ACCAGTACATAAATGTCTGT+AGG 0.647308 tig0014446:+13144 None:intergenic
GCTCTTCTAATGAATCAGGT+AGG 0.648781 tig0014446:+11879 None:intergenic
GTAACAATCCATTCGCCAAG+TGG 0.651845 tig0014446:-11944 Msa1354210:CDS
CCCTAATAACATGATACCTG+AGG 0.670461 tig0014446:-12350 Msa1354210:CDS
ACCAATCCATGATCTGTGTG+TGG 0.672562 tig0014446:+12526 None:intergenic
GCAGATATCCAAAACAAACC+AGG 0.680140 tig0014446:+14660 None:intergenic
AGAACCCAAATACCATAGGG+TGG 0.680575 tig0014446:-12234 Msa1354210:CDS
ATGTAAATCTCCATAGCCAG+TGG 0.680944 tig0014446:+14089 None:intergenic
TCAGAAAGGCAAACTCAAAG+GGG 0.689808 tig0014446:+14929 None:intergenic
CCTATACTGAGGATTGAATG+GGG 0.693402 tig0014446:+15093 None:intergenic
ACCCGAAACAGTAAACAGGA+CGG 0.696148 tig0014446:-12073 Msa1354210:CDS
AAAGGTCATCACCTATACTG+AGG 0.699640 tig0014446:+15082 None:intergenic
GAAGAGAAGAATGACTATCG+TGG 0.704476 tig0014446:+14818 None:intergenic
GATATCCAAAACAAACCAGG+TGG 0.711945 tig0014446:+14663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCATAAAAATTAAGAA+GGG + tig0014446:15432-15451 None:intergenic 10.0%
!! AAAAATCATAAAAATTAAGA+AGG + tig0014446:15433-15452 None:intergenic 10.0%
!! AAATTAAGTTTATAAATGAG+TGG + tig0014446:11703-11722 None:intergenic 15.0%
!! TTTCATGTATAATTTATTAC+AGG - tig0014446:12163-12182 Msa1354210:CDS 15.0%
!! TATAAAATTATTATAGCATG+TGG + tig0014446:13283-13302 None:intergenic 15.0%
!!! ATTTTATATTATACATGTGT+TGG - tig0014446:13295-13314 Msa1354210:intron 15.0%
!! AATAAAATAAAAAGACATGT+GGG + tig0014446:13843-13862 None:intergenic 15.0%
!! AAATAAAATAAAAAGACATG+TGG + tig0014446:13844-13863 None:intergenic 15.0%
!! ATATCTTAATTACCATTAAA+AGG + tig0014446:14482-14501 None:intergenic 15.0%
!! TTATATTTATCAATCATAGT+AGG - tig0014446:14543-14562 Msa1354210:CDS 15.0%
!! AAATCATAAAAATTAAGAAG+GGG + tig0014446:15431-15450 None:intergenic 15.0%
!!! CTCTTTATTAATTATTTTTG+TGG + tig0014446:15598-15617 None:intergenic 15.0%
!! TATAATTTATTACAGGCTTT+GGG - tig0014446:12170-12189 Msa1354210:CDS 20.0%
!! TTATATCTATATATATCACC+TGG + tig0014446:12400-12419 None:intergenic 20.0%
!! AGAAATTTGAAAAGTAAGTA+GGG + tig0014446:12461-12480 None:intergenic 20.0%
!! TAGAAATTTGAAAAGTAAGT+AGG + tig0014446:12462-12481 None:intergenic 20.0%
!!! GACTTTGTTCTTTAAAATTT+GGG + tig0014446:13005-13024 None:intergenic 20.0%
!!! AGACTTTGTTCTTTAAAATT+TGG + tig0014446:13006-13025 None:intergenic 20.0%
!!! ATTTTAAAGAACAAAGTCTT+TGG - tig0014446:13007-13026 Msa1354210:intron 20.0%
!!! TTTTAAAGAACAAAGTCTTT+GGG - tig0014446:13008-13027 Msa1354210:intron 20.0%
!!! GAAAGTACTTACAAAATTTT+GGG + tig0014446:13217-13236 None:intergenic 20.0%
!!! TGAAAGTACTTACAAAATTT+TGG + tig0014446:13218-13237 None:intergenic 20.0%
!! ATAAAATAAAAAGACATGTG+GGG + tig0014446:13842-13861 None:intergenic 20.0%
!!! CATTCTTTAAGATTCATTTA+TGG + tig0014446:14092-14111 None:intergenic 20.0%
!! ACAATCAAAATTTCTTGAAT+TGG + tig0014446:15162-15181 None:intergenic 20.0%
!! AATCATAAAAATTAAGAAGG+GGG + tig0014446:15430-15449 None:intergenic 20.0%
!!! AATTTTTATGATTTTTGCTG+AGG - tig0014446:15437-15456 Msa1354210:intron 20.0%
!!! ATTTTTATGATTTTTGCTGA+GGG - tig0014446:15438-15457 Msa1354210:intron 20.0%
!!! TTCTATTTAGGTTGTTCTAA+TGG + tig0014446:11494-11513 None:intergenic 25.0%
!!! ATTTTTGGATTTCAAAGAGA+GGG + tig0014446:11546-11565 None:intergenic 25.0%
!! GATTTTCTTACATATGCATT+TGG + tig0014446:11573-11592 None:intergenic 25.0%
!!! TCTTTTATTTCAGCTTTACA+AGG - tig0014446:11757-11776 Msa1354210:intron 25.0%
!!! GTTAAGTTTTTCAATTCATG+AGG + tig0014446:11846-11865 None:intergenic 25.0%
!! TATTATGTATTTTCGTAGTC+TGG + tig0014446:12051-12070 None:intergenic 25.0%
! CTATATTGTGACTATGTAAA+AGG + tig0014446:12104-12123 None:intergenic 25.0%
! GTATAATTTATTACAGGCTT+TGG - tig0014446:12169-12188 Msa1354210:CDS 25.0%
! ATAATAGACAACATTGTCAA+TGG - tig0014446:12282-12301 Msa1354210:CDS 25.0%
!!! GACATTCATTTTAGTTTCTA+AGG + tig0014446:12432-12451 None:intergenic 25.0%
! TGAAATTAAATTTGACATGC+TGG + tig0014446:12658-12677 None:intergenic 25.0%
!! GCATGTCAAATTTAATTTCA+TGG - tig0014446:12658-12677 Msa1354210:intron 25.0%
!! CAAATTTAATTTCATGGTTC+TGG - tig0014446:12664-12683 Msa1354210:intron 25.0%
! TTGAAATTGTATAGGAAGTA+GGG + tig0014446:12845-12864 None:intergenic 25.0%
! TTCCTCTTTCAAAAAATTTC+AGG - tig0014446:12885-12904 Msa1354210:intron 25.0%
!!! TACCTGAAATTTTTTGAAAG+AGG + tig0014446:12890-12909 None:intergenic 25.0%
! GATATCAAATAACATCTCTA+TGG + tig0014446:13112-13131 None:intergenic 25.0%
!!! TAACTTTTTGAACATTGGTT+TGG + tig0014446:13366-13385 None:intergenic 25.0%
!! GTAACTAACTTTTTGAACAT+TGG + tig0014446:13371-13390 None:intergenic 25.0%
! TAGCTGACAAAAATAACTTA+TGG + tig0014446:13484-13503 None:intergenic 25.0%
!! TAATAAGAGAGGATTCATTT+TGG - tig0014446:13564-13583 Msa1354210:CDS 25.0%
! TATATCATTAGAGTTACTTG+GGG + tig0014446:13937-13956 None:intergenic 25.0%
! CTATATCATTAGAGTTACTT+GGG + tig0014446:13938-13957 None:intergenic 25.0%
! AATGATATAGGTTTCAGAAA+TGG - tig0014446:13948-13967 Msa1354210:intron 25.0%
! TGAATTGTTAATGTAAGGAT+AGG + tig0014446:14279-14298 None:intergenic 25.0%
! TATCCTTACATTAACAATTC+AGG - tig0014446:14278-14297 Msa1354210:intron 25.0%
!! TGTGATGAATAACCTTTTAA+TGG - tig0014446:14467-14486 Msa1354210:intron 25.0%
!!! TTGGTTCTATATAAATTGCT+AGG - tig0014446:14657-14676 Msa1354210:CDS 25.0%
! GAGTCTACAAATAATTTACA+TGG - tig0014446:14705-14724 Msa1354210:intron 25.0%
! ATCATAAAAATTAAGAAGGG+GGG + tig0014446:15429-15448 None:intergenic 25.0%
!!! CAGATTATTGCATTTGATTT+TGG + tig0014446:15482-15501 None:intergenic 25.0%
!! TATTTAGGTTGTTCTAATGG+TGG + tig0014446:11491-11510 None:intergenic 30.0%
TGGTGTTTCTTGTTCTATTT+AGG + tig0014446:11506-11525 None:intergenic 30.0%
!! CATTTTTGGATTTCAAAGAG+AGG + tig0014446:11547-11566 None:intergenic 30.0%
! TATGCATTTGGAGACATTTT+TGG + tig0014446:11561-11580 None:intergenic 30.0%
AGAAATAGAAGGAAAGATGA+TGG + tig0014446:11627-11646 None:intergenic 30.0%
AAAGCTTGTGAAGAAATAGA+AGG + tig0014446:11638-11657 None:intergenic 30.0%
! CTTTATTTGTTGAGACAAAG+TGG - tig0014446:11654-11673 Msa1354210:intron 30.0%
ATAAATGAGTGGTAAAAACG+TGG + tig0014446:11692-11711 None:intergenic 30.0%
TGAAAGTCTGGCTATAAATA+TGG - tig0014446:11801-11820 Msa1354210:intron 30.0%
ATTCATGAGGTAGAATTCTA+TGG + tig0014446:11833-11852 None:intergenic 30.0%
! ATTTTGCTTATACGTCAGAA+AGG + tig0014446:12253-12272 None:intergenic 30.0%
TTTCTGACGTATAAGCAAAA+TGG - tig0014446:12252-12271 Msa1354210:CDS 30.0%
TTCTTAACATGTTGCGATTA+TGG - tig0014446:12595-12614 Msa1354210:intron 30.0%
TGAAATTGTATAGGAAGTAG+GGG + tig0014446:12844-12863 None:intergenic 30.0%
CTTGAAATTGTATAGGAAGT+AGG + tig0014446:12846-12865 None:intergenic 30.0%
CTACTTCCTATACAATTTCA+AGG - tig0014446:12844-12863 Msa1354210:CDS 30.0%
GATACGTAACTTCAATATAC+TGG - tig0014446:13034-13053 Msa1354210:intron 30.0%
AAATTATTATAGCATGTGGC+TGG + tig0014446:13279-13298 None:intergenic 30.0%
!! GTTTGGATAATAGCTTTGAA+GGG + tig0014446:13349-13368 None:intergenic 30.0%
GTTAGTTACAAATACAGTGT+AGG - tig0014446:13382-13401 Msa1354210:CDS 30.0%
AGATATACTTGACAATTGTG+GGG + tig0014446:13414-13433 None:intergenic 30.0%
CAGATATACTTGACAATTGT+GGG + tig0014446:13415-13434 None:intergenic 30.0%
TCAGATATACTTGACAATTG+TGG + tig0014446:13416-13435 None:intergenic 30.0%
TGAATCCTCTCTTATTAAGA+GGG + tig0014446:13561-13580 None:intergenic 30.0%
ATGAATCCTCTCTTATTAAG+AGG + tig0014446:13562-13581 None:intergenic 30.0%
! TGTTTGAGGTTTAAAACAGA+AGG - tig0014446:13677-13696 Msa1354210:intron 30.0%
AGCATTAAATGATCTTCCAA+AGG - tig0014446:13715-13734 Msa1354210:intron 30.0%
CCTATATCATTAGAGTTACT+TGG + tig0014446:13939-13958 None:intergenic 30.0%
CCAAGTAACTCTAATGATAT+AGG - tig0014446:13936-13955 Msa1354210:intron 30.0%
! ATCCCTAATGAATGTTTTAC+AGG - tig0014446:14422-14441 Msa1354210:intron 30.0%
TGCCTGTAAAACATTCATTA+GGG + tig0014446:14427-14446 None:intergenic 30.0%
TTGCCTGTAAAACATTCATT+AGG + tig0014446:14428-14447 None:intergenic 30.0%
AAAGCTTCTAAACTCAACAT+GGG - tig0014446:14504-14523 Msa1354210:intron 30.0%
GATATAGATCACACATGATT+AGG + tig0014446:14577-14596 None:intergenic 30.0%
CTATATCTGACAGAGATTAA+AGG - tig0014446:14590-14609 Msa1354210:CDS 30.0%
TGCTTTCACAATACATTGTA+TGG + tig0014446:15004-15023 None:intergenic 30.0%
ACTAATGTTCCTCAGTTATA+GGG + tig0014446:15339-15358 None:intergenic 30.0%
AACTAATGTTCCTCAGTTAT+AGG + tig0014446:15340-15359 None:intergenic 30.0%
AAAACTGCAGGTGAAAAATT+TGG - tig0014446:15561-15580 Msa1354210:intron 30.0%
!! TAGAAGGAAAGATGATGGAA+TGG + tig0014446:11622-11641 None:intergenic 35.0%
! TATTTGTTGAGACAAAGTGG+AGG - tig0014446:11657-11676 Msa1354210:intron 35.0%
AAGGACAAGACATGAAAAAG+TGG - tig0014446:11776-11795 Msa1354210:intron 35.0%
GAAAAAGTGGTTTGAAAGTC+TGG - tig0014446:11789-11808 Msa1354210:intron 35.0%
!!! ATACCTCTTTTGAAGCTTTG+AGG - tig0014446:11870-11889 Msa1354210:CDS 35.0%
AATCCTCAAAGCTTCAAAAG+AGG + tig0014446:11876-11895 None:intergenic 35.0%
!!! CTGGAAGAAGTTTTTAAGAC+TGG + tig0014446:11928-11947 None:intergenic 35.0%
GTCTTAAAAACTTCTTCCAG+AGG - tig0014446:11928-11947 Msa1354210:CDS 35.0%
ACCTATACTGAGGATTGAAT+GGG + tig0014446:12076-12095 None:intergenic 35.0%
TTCTAGTCATATACTCAGCT+TGG - tig0014446:12208-12227 Msa1354210:CDS 35.0%
ATCCAAAGAAAATTGCAACC+AGG - tig0014446:12379-12398 Msa1354210:CDS 35.0%
ACATTCGCTTCAATTACTTC+TGG - tig0014446:12770-12789 Msa1354210:CDS 35.0%
CATTCGCTTCAATTACTTCT+GGG - tig0014446:12771-12790 Msa1354210:CDS 35.0%
GATGTGCCTTGAAATTGTAT+AGG + tig0014446:12853-12872 None:intergenic 35.0%
GAAAGAGGAAATTCAGTTCT+TGG + tig0014446:12875-12894 None:intergenic 35.0%
!!! TCCAAGTTCTTTTGGAATCA+GGG + tig0014446:12969-12988 None:intergenic 35.0%
!!! ATCCAAGTTCTTTTGGAATC+AGG + tig0014446:12970-12989 None:intergenic 35.0%
GATTCCAAAAGAACTTGGAT+AGG - tig0014446:12970-12989 Msa1354210:intron 35.0%
ACTTACATGCTGTTCAACTT+GGG - tig0014446:13132-13151 Msa1354210:CDS 35.0%
GGTTTAACAGCATACATCAT+TGG - tig0014446:13153-13172 Msa1354210:CDS 35.0%
!! GGTTTGGATAATAGCTTTGA+AGG + tig0014446:13350-13369 None:intergenic 35.0%
TACAAATACAGTGTAGGACT+AGG - tig0014446:13388-13407 Msa1354210:CDS 35.0%
AACTTAACATGAAACTCGAG+AGG + tig0014446:13459-13478 None:intergenic 35.0%
CAAAAACTCGTTCAGATAAG+AGG - tig0014446:13522-13541 Msa1354210:CDS 35.0%
TTCTTCCCTCTTAATAAGAG+AGG - tig0014446:13553-13572 Msa1354210:CDS 35.0%
!!! TTCACTTTTTGTCTCTTCTC+CGG - tig0014446:13865-13884 Msa1354210:intron 35.0%
!!! CTTCTTGCTTTTAACTTAGC+CGG + tig0014446:13887-13906 None:intergenic 35.0%
TCCTACAGACATTTATGTAC+TGG - tig0014446:14020-14039 Msa1354210:CDS 35.0%
ACCAGTACATAAATGTCTGT+AGG + tig0014446:14024-14043 None:intergenic 35.0%
!! GACATTTATGTACTGGTTTC+AGG - tig0014446:14027-14046 Msa1354210:CDS 35.0%
CCACCTGAATTGTTAATGTA+AGG + tig0014446:14284-14303 None:intergenic 35.0%
CCTTACATTAACAATTCAGG+TGG - tig0014446:14281-14300 Msa1354210:intron 35.0%
! AATGTTTTACAGGCAAATCC+AGG - tig0014446:14432-14451 Msa1354210:intron 35.0%
CAAAGCTTCTAAACTCAACA+TGG - tig0014446:14503-14522 Msa1354210:intron 35.0%
AAGCTTCTAAACTCAACATG+GGG - tig0014446:14505-14524 Msa1354210:intron 35.0%
GATCACACATGATTAGGATT+AGG + tig0014446:14571-14590 None:intergenic 35.0%
CCTCAGGTATCATGTTATTA+GGG + tig0014446:14818-14837 None:intergenic 35.0%
TCCTCAGGTATCATGTTATT+AGG + tig0014446:14819-14838 None:intergenic 35.0%
AATAACATGATACCTGAGGA+TGG - tig0014446:14819-14838 Msa1354210:CDS 35.0%
TTGCCAAAGTTAAGGATTTG+TGG + tig0014446:15062-15081 None:intergenic 35.0%
ATCCTTAACTTTGGCAAGAA+TGG - tig0014446:15065-15084 Msa1354210:intron 35.0%
TCTGTGTACACTTTCTCTAA+TGG + tig0014446:15137-15156 None:intergenic 35.0%
TTGTCCAAGTGACATAGAAA+TGG - tig0014446:15178-15197 Msa1354210:CDS 35.0%
! TTATGATTTTTGCTGAGGGA+AGG - tig0014446:15442-15461 Msa1354210:intron 35.0%
! TATGATTTTTGCTGAGGGAA+GGG - tig0014446:15443-15462 Msa1354210:intron 35.0%
!! CTATTAACTTGCAAAACTGC+AGG - tig0014446:15549-15568 Msa1354210:intron 35.0%
GACATTGATGTCATTAGAGA+TGG - tig0014446:15633-15652 Msa1354210:five_prime_UTR 35.0%
GGTGATCATCTCTTTCTTAT+TGG - tig0014446:15654-15673 Msa1354210:five_prime_UTR 35.0%
GATCATCTCTTTCTTATTGG+CGG - tig0014446:15657-15676 Msa1354210:five_prime_UTR 35.0%
ATGAGTGGTAAAAACGTGGA+GGG + tig0014446:11688-11707 None:intergenic 40.0%
AATGAGTGGTAAAAACGTGG+AGG + tig0014446:11689-11708 None:intergenic 40.0%
GAGGTAGAATTCTATGGACT+TGG + tig0014446:11827-11846 None:intergenic 40.0%
AAAACTTCTTCCAGAGGTTC+TGG - tig0014446:11934-11953 Msa1354210:CDS 40.0%
TGGTTGGACGAAATGGAAAT+GGG - tig0014446:11954-11973 Msa1354210:CDS 40.0%
AGTGATCTTCTACCATCTCT+TGG - tig0014446:12005-12024 Msa1354210:CDS 40.0%
!! ATTTTCGTAGTCTGGTTTCC+TGG + tig0014446:12043-12062 None:intergenic 40.0%
CCTATACTGAGGATTGAATG+GGG + tig0014446:12075-12094 None:intergenic 40.0%
CACCTATACTGAGGATTGAA+TGG + tig0014446:12077-12096 None:intergenic 40.0%
AAAGGTCATCACCTATACTG+AGG + tig0014446:12086-12105 None:intergenic 40.0%
TCAGAAAGGCAAACTCAAAG+GGG + tig0014446:12239-12258 None:intergenic 40.0%
GTCAGAAAGGCAAACTCAAA+GGG + tig0014446:12240-12259 None:intergenic 40.0%
GAAGAGAAGAATGACTATCG+TGG + tig0014446:12350-12369 None:intergenic 40.0%
! CACCTGGTTGCAATTTTCTT+TGG + tig0014446:12384-12403 None:intergenic 40.0%
GATATCCAAAACAAACCAGG+TGG + tig0014446:12505-12524 None:intergenic 40.0%
GCAGATATCCAAAACAAACC+AGG + tig0014446:12508-12527 None:intergenic 40.0%
GTAGTGAAGAGGAGACTAAT+GGG + tig0014446:12549-12568 None:intergenic 40.0%
AGTAGTGAAGAGGAGACTAA+TGG + tig0014446:12550-12569 None:intergenic 40.0%
CACTGTCATAAGTAGTGAAG+AGG + tig0014446:12560-12579 None:intergenic 40.0%
ACTACTTATGACAGTGAGCT+TGG - tig0014446:12564-12583 Msa1354210:CDS 40.0%
! ACATAGCAAAGGTGCAAGTA+AGG + tig0014446:12734-12753 None:intergenic 40.0%
! TCGAGTCTGAAACATAGCAA+AGG + tig0014446:12745-12764 None:intergenic 40.0%
GCTATGTTTCAGACTCGAAA+AGG - tig0014446:12747-12766 Msa1354210:CDS 40.0%
GCTTCAATTACTTCTGGGTT+AGG - tig0014446:12776-12795 Msa1354210:CDS 40.0%
GGGGAGTTTATGAGGTTTAA+TGG + tig0014446:12825-12844 None:intergenic 40.0%
ACCCTGATTCCAAAAGAACT+TGG - tig0014446:12965-12984 Msa1354210:intron 40.0%
! AGCACCTATCCAAGTTCTTT+TGG + tig0014446:12977-12996 None:intergenic 40.0%
ATGTAAATCTCCATAGCCAG+TGG + tig0014446:13079-13098 None:intergenic 40.0%
CACTTACATGCTGTTCAACT+TGG - tig0014446:13131-13150 Msa1354210:CDS 40.0%
TGACTAACCTTGTAGTTCAC+TGG - tig0014446:13181-13200 Msa1354210:CDS 40.0%
!! TACAAAATTTTGGGTGCGAC+TGG + tig0014446:13208-13227 None:intergenic 40.0%
AAACTCGAGAGGATTGTACT+AGG + tig0014446:13448-13467 None:intergenic 40.0%
!! AGGATTCATTTTGGTCACAG+AGG - tig0014446:13573-13592 Msa1354210:CDS 40.0%
!! GGATTCATTTTGGTCACAGA+GGG - tig0014446:13574-13593 Msa1354210:CDS 40.0%
TCGCGTACACAATCAAATGT+TGG - tig0014446:13646-13665 Msa1354210:intron 40.0%
TGTTGGCACACATTTGTTTG+AGG - tig0014446:13663-13682 Msa1354210:intron 40.0%
ATGATCTTCCAAAGGCGATT+CGG - tig0014446:13723-13742 Msa1354210:intron 40.0%
CAGTTGGAAAAGGAAGTCAT+TGG + tig0014446:13813-13832 None:intergenic 40.0%
! CAATGACTTCCTTTTCCAAC+TGG - tig0014446:13811-13830 Msa1354210:intron 40.0%
GGGTCAGATGTTGAAACTTT+AGG + tig0014446:13917-13936 None:intergenic 40.0%
TTCCTTTGGTGGGAAATACT+CGG + tig0014446:13977-13996 None:intergenic 40.0%
GTATCACATCTTCCTTTGGT+GGG + tig0014446:13987-14006 None:intergenic 40.0%
AGTATCACATCTTCCTTTGG+TGG + tig0014446:13988-14007 None:intergenic 40.0%
TGCAGTATCACATCTTCCTT+TGG + tig0014446:13991-14010 None:intergenic 40.0%
AATCTCGTTCACTGCATTGA+TGG - tig0014446:14162-14181 Msa1354210:CDS 40.0%
! ATCTCGTTCACTGCATTGAT+GGG - tig0014446:14163-14182 Msa1354210:CDS 40.0%
! TTTTGACAAAGCAACTGCAG+TGG - tig0014446:14305-14324 Msa1354210:intron 40.0%
TCTGTAGTTCGAACTGTGAA+AGG + tig0014446:14372-14391 None:intergenic 40.0%
GAATATCCACACACAGATCA+TGG - tig0014446:14633-14652 Msa1354210:CDS 40.0%
CTCCTTCATGCATTAAGGAA+TGG + tig0014446:14731-14750 None:intergenic 40.0%
GTTCTCTCCTTCATGCATTA+AGG + tig0014446:14736-14755 None:intergenic 40.0%
CCCTAATAACATGATACCTG+AGG - tig0014446:14815-14834 Msa1354210:CDS 40.0%
CACAGAACCCAAATACCATA+GGG - tig0014446:14928-14947 Msa1354210:CDS 40.0%
GAGCCACAAATCCTTAACTT+TGG - tig0014446:15056-15075 Msa1354210:intron 40.0%
AGCCATTCTTGCCAAAGTTA+AGG + tig0014446:15070-15089 None:intergenic 40.0%
TACCGTCCTGTTTACTGTTT+CGG + tig0014446:15097-15116 None:intergenic 40.0%
! CTTGCCATTTCTATGTCACT+TGG + tig0014446:15185-15204 None:intergenic 40.0%
CAAGTGACATAGAAATGGCA+AGG - tig0014446:15183-15202 Msa1354210:CDS 40.0%
! ATGGATTGTTACCCTCTTCT+TGG + tig0014446:15213-15232 None:intergenic 40.0%
GCTCTTCTAATGAATCAGGT+AGG + tig0014446:15289-15308 None:intergenic 40.0%
AGCAGCTCTTCTAATGAATC+AGG + tig0014446:15293-15312 None:intergenic 40.0%
! AGCATTGAACCCTATAACTG+AGG - tig0014446:15327-15346 Msa1354210:five_prime_UTR 40.0%
AAATTAAGAAGGGGGGTTGT+GGG + tig0014446:15422-15441 None:intergenic 40.0%
AAAATTAAGAAGGGGGGTTG+TGG + tig0014446:15423-15442 None:intergenic 40.0%
ACTGCAGGTGAAAAATTTGG+CGG - tig0014446:15564-15583 Msa1354210:intron 40.0%
GGGTACAAAGAAGCTGCAAA+TGG + tig0014446:11526-11545 None:intergenic 45.0%
GAATGGTAGAGTCTTGCTAG+TGG + tig0014446:11605-11624 None:intergenic 45.0%
CTGGTTGGACGAAATGGAAA+TGG - tig0014446:11953-11972 Msa1354210:CDS 45.0%
!! TCTGGTTTCCTGGTTTGTTC+GGG + tig0014446:12033-12052 None:intergenic 45.0%
!! GTCTGGTTTCCTGGTTTGTT+CGG + tig0014446:12034-12053 None:intergenic 45.0%
CCCCATTCAATCCTCAGTAT+AGG - tig0014446:12072-12091 Msa1354210:CDS 45.0%
CGTCAGAAAGGCAAACTCAA+AGG + tig0014446:12241-12260 None:intergenic 45.0%
CATGTAGTTACATGTCCACC+TGG - tig0014446:12487-12506 Msa1354210:CDS 45.0%
!!! CATGTCCACCTGGTTTGTTT+TGG - tig0014446:12497-12516 Msa1354210:CDS 45.0%
GAGTCAGTTCTCTGTTTGCA+AGG - tig0014446:12628-12647 Msa1354210:intron 45.0%
! GCAAGTAAGGAAGAAAGCAC+TGG + tig0014446:12721-12740 None:intergenic 45.0%
AGGAAGTAGGGGAGTTTATG+AGG + tig0014446:12833-12852 None:intergenic 45.0%
ATTTGATTGTGTACGCGACG+TGG + tig0014446:13644-13663 None:intergenic 45.0%
GCACGACAGGAAAAAAGAGA+TGG + tig0014446:13763-13782 None:intergenic 45.0%
!!! CTTTTTTCCTGTCGTGCAGA+AGG - tig0014446:13766-13785 Msa1354210:intron 45.0%
! GGGGTATTACCAGTTGGAAA+AGG + tig0014446:13823-13842 None:intergenic 45.0%
! ACATGTGGGGTATTACCAGT+TGG + tig0014446:13829-13848 None:intergenic 45.0%
!! GTGGAAGCATTTGGAGAGAT+TGG - tig0014446:14324-14343 Msa1354210:intron 45.0%
ATCACAATCTGTGCATCTCC+TGG + tig0014446:14453-14472 None:intergenic 45.0%
! CAGAGATTAAAGGAGCGTGA+AGG - tig0014446:14600-14619 Msa1354210:CDS 45.0%
TCCACACACAGATCATGGAT+TGG - tig0014446:14638-14657 Msa1354210:CDS 45.0%
ACCAATCCATGATCTGTGTG+TGG + tig0014446:14642-14661 None:intergenic 45.0%
GGCCATTCCTTAATGCATGA+AGG - tig0014446:14726-14745 Msa1354210:intron 45.0%
! AGATCTCTTTTGCCATCCTC+AGG + tig0014446:14834-14853 None:intergenic 45.0%
! TCTAGTTTCCCCTTATGCAC+AGG + tig0014446:14873-14892 None:intergenic 45.0%
GCACAGAACCCAAATACCAT+AGG - tig0014446:14927-14946 Msa1354210:CDS 45.0%
AGAACCCAAATACCATAGGG+TGG - tig0014446:14931-14950 Msa1354210:CDS 45.0%
GTGTCCACCCTATGGTATTT+GGG + tig0014446:14938-14957 None:intergenic 45.0%
TGTGTCCACCCTATGGTATT+TGG + tig0014446:14939-14958 None:intergenic 45.0%
! AGCTTTTTGTGTCCACCCTA+TGG + tig0014446:14946-14965 None:intergenic 45.0%
CTCAACCCGAAACAGTAAAC+AGG - tig0014446:15088-15107 Msa1354210:intron 45.0%
ACCCGAAACAGTAAACAGGA+CGG - tig0014446:15092-15111 Msa1354210:intron 45.0%
ACCGTCCTGTTTACTGTTTC+GGG + tig0014446:15096-15115 None:intergenic 45.0%
GTAACAATCCATTCGCCAAG+TGG - tig0014446:15221-15240 Msa1354210:CDS 45.0%
GAAGAGCTGCTCAAAATTGC+TGG - tig0014446:15302-15321 Msa1354210:five_prime_UTR 45.0%
AATTAAGAAGGGGGGTTGTG+GGG + tig0014446:15421-15440 None:intergenic 45.0%
! CTTCTTCCAGAGGTTCTGGT+TGG - tig0014446:11938-11957 Msa1354210:CDS 50.0%
TTTCGTCCAACCAGAACCTC+TGG + tig0014446:11947-11966 None:intergenic 50.0%
! GAGGTTCTGGTTGGACGAAA+TGG - tig0014446:11947-11966 Msa1354210:CDS 50.0%
GAACGTAAGCACGATGTCGA+TGG + tig0014446:12316-12335 None:intergenic 50.0%
!! AGGAGACTAATGGGCTCAAG+TGG + tig0014446:12540-12559 None:intergenic 50.0%
!! ACAGAGAACTGACTCGTCTC+AGG + tig0014446:12623-12642 None:intergenic 50.0%
TGCACAGTGCACTGCAAACA+AGG + tig0014446:12914-12933 None:intergenic 50.0%
TTGTTTGCAGTGCACTGTGC+AGG - tig0014446:12913-12932 Msa1354210:intron 50.0%
ATCGTCACGCTTACTACCAC+TGG - tig0014446:13060-13079 Msa1354210:intron 50.0%
! ACGCTTACTACCACTGGCTA+TGG - tig0014446:13066-13085 Msa1354210:intron 50.0%
! GACTGGTCCAGTGAACTACA+AGG + tig0014446:13191-13210 None:intergenic 50.0%
TTATAGCATGTGGCTGGCAC+AGG + tig0014446:13273-13292 None:intergenic 50.0%
ATGCTTGACCGAATCGCCTT+TGG + tig0014446:13734-13753 None:intergenic 50.0%
CAGAAGGTCTACCTCTTCCA+AGG - tig0014446:13782-13801 Msa1354210:intron 50.0%
CATTGGAGACTCCTTGGAAG+AGG + tig0014446:13796-13815 None:intergenic 50.0%
GGAAGTCATTGGAGACTCCT+TGG + tig0014446:13802-13821 None:intergenic 50.0%
AGCCGAGTATTTCCCACCAA+AGG - tig0014446:13972-13991 Msa1354210:CDS 50.0%
! GTGGTGAGTTGGCTAAAGCA+TGG - tig0014446:14054-14073 Msa1354210:CDS 50.0%
!! GCAACTGCAGTGGAAGCATT+TGG - tig0014446:14315-14334 Msa1354210:intron 50.0%
GTTCGAACTGTGAAAGGCTG+TGG + tig0014446:14366-14385 None:intergenic 50.0%
TGGCAAGGTTCACCAAGAAG+AGG - tig0014446:15198-15217 Msa1354210:CDS 50.0%
GGCAAGGTTCACCAAGAAGA+GGG - tig0014446:15199-15218 Msa1354210:CDS 50.0%
CAATCCATTCGCCAAGTGGA+TGG - tig0014446:15225-15244 Msa1354210:CDS 50.0%
TTCTCCATCCACTTGGCGAA+TGG + tig0014446:15232-15251 None:intergenic 50.0%
GAGCTACTTCTCCATCCACT+TGG + tig0014446:15239-15258 None:intergenic 50.0%
GGATGGAGAAGTAGCTCACA+TGG - tig0014446:15242-15261 Msa1354210:CDS 50.0%
AGTAGCTCACATGGACAGCA+CGG - tig0014446:15251-15270 Msa1354210:CDS 50.0%
ACACACGCATACACACACGT+GGG - tig0014446:15362-15381 Msa1354210:five_prime_UTR 50.0%
TACACACACGTGGGAGAGAA+TGG - tig0014446:15371-15390 Msa1354210:five_prime_UTR 50.0%
ATTAAGAAGGGGGGTTGTGG+GGG + tig0014446:15420-15439 None:intergenic 50.0%
TTTGTTCGGGCGCCAAGAGA+TGG + tig0014446:12020-12039 None:intergenic 55.0%
AGGTAGACCTTCTGCACGAC+AGG + tig0014446:13776-13795 None:intergenic 55.0%
!! TGTACTGGTTTCAGGCGCAG+TGG - tig0014446:14035-14054 Msa1354210:CDS 55.0%
TTTCAGGCGCAGTGGTGAGT+TGG - tig0014446:14043-14062 Msa1354210:CDS 55.0%
TGCTGTGCTGCCTGTGCATA+AGG - tig0014446:14860-14879 Msa1354210:CDS 55.0%
GCTGTGCTGCCTGTGCATAA+GGG - tig0014446:14861-14880 Msa1354210:CDS 55.0%
CTGTGCTGCCTGTGCATAAG+GGG - tig0014446:14862-14881 Msa1354210:CDS 55.0%
GACACACGCATACACACACG+TGG - tig0014446:15361-15380 Msa1354210:five_prime_UTR 55.0%
TTAAGAAGGGGGGTTGTGGG+GGG + tig0014446:15419-15438 None:intergenic 55.0%
TCTTGGCGCCCGAACAAACC+AGG - tig0014446:12022-12041 Msa1354210:CDS 60.0%
TAAGAAGGGGGGTTGTGGGG+GGG + tig0014446:15418-15437 None:intergenic 60.0%
GCACAGGCAGCACAGCAGCA+TGG + tig0014446:14857-14876 None:intergenic 65.0%
AAGAAGGGGGGTTGTGGGGG+GGG + tig0014446:15417-15436 None:intergenic 65.0%
AGAAGGGGGGTTGTGGGGGG+GGG + tig0014446:15416-15435 None:intergenic 70.0%
AAGGGGGGTTGTGGGGGGGG+GGG + tig0014446:15414-15433 None:intergenic 75.0%
GAAGGGGGGTTGTGGGGGGG+GGG + tig0014446:15415-15434 None:intergenic 75.0%
! AGGGGGGTTGTGGGGGGGGG+GGG + tig0014446:15413-15432 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0014446 gene 11483 15704 11483 ID=Msa1354210;Name=Msa1354210
tig0014446 mRNA 11483 15704 11483 ID=Msa1354210-mRNA-1;Parent=Msa1354210;Name=Msa1354210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=244|0.45|0.33|1|0.90|0.83|12|0|780
tig0014446 exon 11483 11616 11483 ID=Msa1354210-mRNA-1:exon:9027;Parent=Msa1354210-mRNA-1
tig0014446 exon 11864 12584 11864 ID=Msa1354210-mRNA-1:exon:9026;Parent=Msa1354210-mRNA-1
tig0014446 exon 12699 12887 12699 ID=Msa1354210-mRNA-1:exon:9025;Parent=Msa1354210-mRNA-1
tig0014446 exon 12993 13025 12993 ID=Msa1354210-mRNA-1:exon:9024;Parent=Msa1354210-mRNA-1
tig0014446 exon 13131 13229 13131 ID=Msa1354210-mRNA-1:exon:9023;Parent=Msa1354210-mRNA-1
tig0014446 exon 13355 13594 13355 ID=Msa1354210-mRNA-1:exon:9022;Parent=Msa1354210-mRNA-1
tig0014446 exon 13963 14280 13963 ID=Msa1354210-mRNA-1:exon:9021;Parent=Msa1354210-mRNA-1
tig0014446 exon 14371 14428 14371 ID=Msa1354210-mRNA-1:exon:9020;Parent=Msa1354210-mRNA-1
tig0014446 exon 14538 14693 14538 ID=Msa1354210-mRNA-1:exon:9019;Parent=Msa1354210-mRNA-1
tig0014446 exon 14787 15002 14787 ID=Msa1354210-mRNA-1:exon:9018;Parent=Msa1354210-mRNA-1
tig0014446 exon 15094 15417 15094 ID=Msa1354210-mRNA-1:exon:9017;Parent=Msa1354210-mRNA-1
tig0014446 exon 15606 15704 15606 ID=Msa1354210-mRNA-1:exon:9016;Parent=Msa1354210-mRNA-1
tig0014446 five_prime_UTR 15606 15704 15606 ID=Msa1354210-mRNA-1:five_prime_utr;Parent=Msa1354210-mRNA-1
tig0014446 five_prime_UTR 15273 15417 15273 ID=Msa1354210-mRNA-1:five_prime_utr;Parent=Msa1354210-mRNA-1
tig0014446 CDS 15094 15272 15094 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 14787 15002 14787 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 14538 14693 14538 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 14371 14428 14371 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 13963 14280 13963 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 13355 13594 13355 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 13131 13229 13131 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 12993 13025 12993 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 12699 12887 12699 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 11864 12584 11864 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
tig0014446 CDS 11483 11616 11483 ID=Msa1354210-mRNA-1:cds;Parent=Msa1354210-mRNA-1
Gene Sequence

>Msa1354210

ATGTCATTTTCCAGTCTTAAAAACTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCCCGAACAAACCAGGAAACCAGACTACGAAAATACATAATATCCCCATTCAATCCTCAGTATAGGCTTTGGGAGTTGTTACTGATTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACGTATAAGCAAAATGGACTATTCATAATAGACAACATTGTCAATGGCTTCTTTGCCATCGACATCGTGCTTACGTTCTTCGTTGCATACCACGATAGTCATTCTTCTCTTCTCATTGATGATCCAAAGAAAATTGCAACCAGTTACATGTCCACCTGGTTTGTTTTGGATATCTGCTCAACAGCACCACTTGAGCCCATTAGTCTCCTCTTCACTACTTATGACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTACTTCTGGGTTAGGTGTACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTACTTGCAGATATGTACCCTGATTCCAAAAGAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAACAAAGTCTTTGGGACAGATACGTAACTTCAATATACTGGTCTATCGTCACGCTTACTACCACTGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGTTATTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACAGCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCAAAATTTTAGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACGTCGCGTACACAATCAAATGTTGGCACACATTTGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCGATTCGGTCAAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCAATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCCGAGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACATTTATGTACTGGTTTCAGGCGCAGTGAATCTCGTTCACTGCATTGATGGGAATGATCAAGTGGTTTTTGACAAAGCAACTGCAGTGGAAGCATTTGGAGAGATTGGAGTTTTATATAATGTACCACAGCCTTTCACAGTTCGAACTACAGAGCTTTCTCAGATTTTAAGAATCAACAGAACATCCCTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAGATTGTGATGAATAACCTTTTAATGAGATTAAAGGAGCGTGAAGGATTCGACTCTGAATATCCACACACAGATCATGGATTGGTTCTATATAAATTGCTAGGTAACACAAAAGAAAGCTCTTCTCAAGAGTCTACAAATAATTTACATGGCCATTCCTTAATGCATGAAGGAGAGAACATAAATATCAGAGACTCACAGAATAATTTGCATATTGTGACTAATGATGTTTATTCAGACCCTAATAACATGATACCTGAGGATGGCAAAAGAGATCTCCATGCTGCTGTGCTGCCTGTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGATTGAAAGAGATGCAAAAGCACAGAACCCAAATACCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCACTTCTGACCATACAATGTATTGTGAAAGCAAAAAATCAGATGAACATAGAATAGAGATTGTTGAGCCACAAATCCTTAACTTTGGCAAGAATGGCTCAACCCGAAACAGTAAACAGGACGGTATTAGAAATATCAACTTTCCATTAGAGAAAGTGTACACAGACACCAATTCAAGAAATTTTGATTGTCCAAGTGACATAGAAATGGCAAGGTTCACCAAGAAGAGGGTAACAATCCATTCGCCAAGTGGATGGAGAAGTAGCTCACATGGACAGCACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAATGCCACAAAAATAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTAGAGATGGTGATCATCTCTTTCTTATTGGCGGTGATATTGACAATTTGAACTCATGA
Protein sequence

>Msa1354210

MSFSSLKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGARTNQETRLRKYIISPFNPQYRLWELLLIVLVIYSAWICPFEFAFLTYKQNGLFIIDNIVNGFFAIDIVLTFFVAYHDSHSSLLIDDPKKIATSYMSTWFVLDICSTAPLEPISLLFTTYDSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCFNYLLADMYPDSKRTWIGAMYPNFKEQSLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTAYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPRRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSNDFLFQLVSEMEAEYFPPKEDVILQNESPTDIYVLVSGAVNLVHCIDGNDQVVFDKATAVEAFGEIGVLYNVPQPFTVRTTELSQILRINRTSLMNVLQANPGDAQIVMNNLLMRLKEREGFDSEYPHTDHGLVLYKLLGNTKESSSQESTNNLHGHSLMHEGENINIRDSQNNLHIVTNDVYSDPNNMIPEDGKRDLHAAVLPVHKGKLDIVEILIERDAKAQNPNTIGWTQKALVQQLKNKSTSDHTMYCESKKSDEHRIEIVEPQILNFGKNGSTRNSKQDGIRNINFPLEKVYTDTNSRNFDCPSDIEMARFTKKRVTIHSPSGWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNATKIINKENAEIDDIDVIRDGDHLFLIGGDIDNLNS*