AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194870 MtrunA17_Chr2g0286031 90.602 681 20 4 132 780 16 684 0.0 1253
Msa0194870 MtrunA17_Chr8g0356081 57.381 779 247 7 1 779 1 694 0.0 865
Msa0194870 MtrunA17_Chr4g0063141 62.218 487 179 3 16 500 11 494 0.0 622
Msa0194870 MtrunA17_Chr4g0063141 25.914 301 172 9 511 772 582 870 8.84e-14 75.5
Msa0194870 MtrunA17_Chr2g0277651 41.396 831 391 17 16 776 25 829 0.0 578
Msa0194870 MtrunA17_Chr1g0148981 48.976 537 211 6 24 500 23 556 2.15e-168 512
Msa0194870 MtrunA17_Chr3g0138671 47.529 526 270 5 29 549 21 545 1.25e-158 474
Msa0194870 MtrunA17_Chr3g0138131 54.220 391 173 3 34 421 46 433 1.73e-143 430
Msa0194870 MtrunA17_Chr5g0434371 35.174 489 303 6 16 495 46 529 2.31e-94 313
Msa0194870 MtrunA17_Chr2g0286041 99.237 131 1 0 1 131 1 131 6.61e-87 270
Msa0194870 MtrunA17_Chr4g0063071 31.897 232 151 3 273 500 5 233 1.66e-31 124
Msa0194870 MtrunA17_Chr4g0062571 31.507 219 136 5 82 299 2 207 9.80e-22 94.7
Msa0194870 MtrunA17_Chr4g0062561 31.858 226 131 7 82 299 2 212 1.29e-20 97.4
Msa0194870 MtrunA17_Chr4g0063081 32.979 188 119 4 68 251 8 192 1.17e-18 85.1
Msa0194870 MtrunA17_Chr4g0009161 56.338 71 29 2 430 500 12 80 4.36e-15 75.5
Msa0194870 MtrunA17_Chr3g0138141 57.143 70 22 3 702 770 385 447 1.58e-12 70.5
Msa0194870 MtrunA17_Chr3g0138141 42.529 87 48 1 435 519 12 98 5.37e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194870 AT5G46240.1 71.571 503 142 1 1 503 1 502 0.0 788
Msa0194870 AT5G46240.1 50.538 93 37 2 681 770 588 674 1.21e-17 88.2
Msa0194870 AT4G18290.2 65.324 571 190 3 1 564 12 581 0.0 771
Msa0194870 AT4G18290.1 65.324 571 190 3 1 564 1 570 0.0 770
Msa0194870 AT4G32500.1 44.070 860 353 21 21 771 37 877 0.0 642
Msa0194870 AT2G25600.1 42.526 863 349 17 29 770 48 884 0.0 632
Msa0194870 AT2G26650.1 61.680 488 178 4 16 500 13 494 0.0 621
Msa0194870 AT2G26650.1 29.046 241 131 11 554 768 625 851 3.53e-13 73.9
Msa0194870 AT4G22200.1 40.886 790 393 21 29 775 43 801 0.0 548
Msa0194870 AT2G26650.2 63.544 395 136 3 108 500 1 389 1.28e-172 515
Msa0194870 AT2G26650.2 28.926 242 132 11 554 769 520 747 4.64e-13 73.6
Msa0194870 AT4G22200.2 51.975 481 225 5 29 505 43 521 4.79e-172 508
Msa0194870 AT4G32650.1 42.626 617 326 11 29 630 55 658 8.51e-141 430
Msa0194870 AT4G32650.2 49.372 478 231 6 29 499 55 528 3.66e-140 426
Msa0194870 AT4G32650.3 49.372 478 231 6 29 499 55 528 5.32e-140 428
Msa0194870 AT3G02850.1 30.390 770 473 19 48 770 71 824 7.01e-104 338
Msa0194870 AT3G02850.3 36.383 470 278 8 48 502 71 534 7.56e-99 318
Msa0194870 AT3G02850.2 33.953 592 338 15 48 624 71 624 9.05e-98 320
Msa0194870 AT5G37500.1 29.253 776 491 22 49 777 55 819 2.06e-97 321
Msa0194870 AT5G37500.4 36.481 466 278 8 49 505 55 511 3.34e-92 304
Msa0194870 AT5G37500.2 36.481 466 278 8 49 505 55 511 1.98e-91 305
Msa0194870 AT5G37500.3 35.965 456 274 8 59 505 11 457 6.46e-88 295
Msa0194870 AT2G23980.6 19.676 432 257 10 94 444 131 553 6.22e-14 76.3
Msa0194870 AT2G23980.9 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194870 AT2G23980.10 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194870 AT2G23980.1 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194870 AT2G23980.4 19.676 432 257 10 94 444 158 580 6.50e-14 76.3
Msa0194870 AT2G23980.5 19.676 432 257 10 94 444 158 580 6.50e-14 76.3

Find 155 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTTGTTCTTTAAAATT+TGG 0.068175 2_1:+11289719 None:intergenic
TGAAAGTACTTACAAAATTT+TGG 0.084247 2_1:+11289507 None:intergenic
ACCGTCCTGTTTACTGTTTC+GGG 0.161405 2_1:+11287630 None:intergenic
TTCTTAACATGTTGCGATTA+TGG 0.172049 2_1:-11290127 Msa0194870:CDS
TGTGTCCACCCTATGGTATT+TGG 0.174885 2_1:+11287787 None:intergenic
GACATTTATGTACTGGTTTC+AGG 0.188389 2_1:-11288696 Msa0194870:CDS
TCCTCAGGTATCATGTTATT+AGG 0.219587 2_1:+11287907 None:intergenic
AGCACCTATCCAAGTTCTTT+TGG 0.225780 2_1:+11289748 None:intergenic
TACCGTCCTGTTTACTGTTT+CGG 0.226231 2_1:+11287629 None:intergenic
ATATCTTAATTACCATTAAA+AGG 0.234087 2_1:+11288244 None:intergenic
TGGTGTTTCTTGTTCTATTT+AGG 0.240551 2_1:+11291209 None:intergenic
GTTCTCTCCTTCATGCATTA+AGG 0.253490 2_1:+11287990 None:intergenic
GACTTTGTTCTTTAAAATTT+GGG 0.262231 2_1:+11289720 None:intergenic
TTCTATTTAGGTTGTTCTAA+TGG 0.265035 2_1:+11291221 None:intergenic
GGTGATCATCTCTTTCTTAT+TGG 0.265317 2_1:-11287063 Msa0194870:CDS
TTGCCTGTAAAACATTCATT+AGG 0.266733 2_1:+11288298 None:intergenic
AAAACTTCTTCCAGAGGTTC+TGG 0.278730 2_1:-11290778 Msa0194870:CDS
ACATTCGCTTCAATTACTTC+TGG 0.279463 2_1:-11289952 Msa0194870:CDS
ATTCATGAGGTAGAATTCTA+TGG 0.298267 2_1:+11290882 None:intergenic
CATGTCCACCTGGTTTGTTT+TGG 0.299573 2_1:-11290225 Msa0194870:CDS
ACAATCAAAATTTCTTGAAT+TGG 0.300844 2_1:+11287564 None:intergenic
ATGGATTGTTACCCTCTTCT+TGG 0.304577 2_1:+11287513 None:intergenic
GTGTCCACCCTATGGTATTT+GGG 0.305489 2_1:+11287788 None:intergenic
GGTTGTTCTAATGGTGGTTT+TGG 0.308517 2_1:+11291230 None:intergenic
GTCTGGTTTCCTGGTTTGTT+CGG 0.314225 2_1:+11290681 None:intergenic
TGAAAGTCTGGCTATAAATA+TGG 0.322702 2_1:-11290911 Msa0194870:five_prime_UTR
TGCTGTGCTGCCTGTGCATA+AGG 0.326896 2_1:-11287863 Msa0194870:CDS
CTATATCTGACAGAGATTAA+AGG 0.329489 2_1:-11288133 Msa0194870:intron
TGCTTTCACAATACATTGTA+TGG 0.333962 2_1:+11287722 None:intergenic
TGCAGTATCACATCTTCCTT+TGG 0.337846 2_1:+11288735 None:intergenic
ATCCTTAACTTTGGCAAGAA+TGG 0.340508 2_1:-11287658 Msa0194870:CDS
TCTGGTTTCCTGGTTTGTTC+GGG 0.349964 2_1:+11290682 None:intergenic
AGCAGCTCTTCTAATGAATC+AGG 0.350428 2_1:+11287433 None:intergenic
CACTTACATGCTGTTCAACT+TGG 0.353116 2_1:-11289591 Msa0194870:CDS
TTTCTGACGTATAAGCAAAA+TGG 0.358263 2_1:-11290470 Msa0194870:CDS
GTGGAAGCATTTGGAGAGAT+TGG 0.359303 2_1:-11288399 Msa0194870:CDS
TATAATTTATTACAGGCTTT+GGG 0.364885 2_1:-11290552 Msa0194870:intron
TGCCTGTAAAACATTCATTA+GGG 0.373671 2_1:+11288299 None:intergenic
GCTTCAATTACTTCTGGGTT+AGG 0.376145 2_1:-11289946 Msa0194870:CDS
CCTCAGGTATCATGTTATTA+GGG 0.384210 2_1:+11287908 None:intergenic
GAGGTTCTGGTTGGACGAAA+TGG 0.387098 2_1:-11290765 Msa0194870:CDS
GATATCAAATAACATCTCTA+TGG 0.391859 2_1:+11289613 None:intergenic
GGTTTAACAGCATACATCAT+TGG 0.392948 2_1:-11289569 Msa0194870:CDS
ATGCTTGACCGAATCGCCTT+TGG 0.394681 2_1:+11288991 None:intergenic
GAAGAGCTGCTCAAAATTGC+TGG 0.396916 2_1:-11287421 Msa0194870:intron
AGCCATTCTTGCCAAAGTTA+AGG 0.398518 2_1:+11287656 None:intergenic
CTGGTTGGACGAAATGGAAA+TGG 0.400490 2_1:-11290759 Msa0194870:CDS
ATCACAATCTGTGCATCTCC+TGG 0.408539 2_1:+11288273 None:intergenic
TCTGTGTACACTTTCTCTAA+TGG 0.409182 2_1:+11287589 None:intergenic
CATTCGCTTCAATTACTTCT+GGG 0.411241 2_1:-11289951 Msa0194870:CDS
CACCTATACTGAGGATTGAA+TGG 0.411860 2_1:+11290638 None:intergenic
AATCTCGTTCACTGCATTGA+TGG 0.422427 2_1:-11288561 Msa0194870:CDS
GCAACTGCAGTGGAAGCATT+TGG 0.423214 2_1:-11288408 Msa0194870:CDS
AATGATATAGGTTTCAGAAA+TGG 0.426448 2_1:-11288775 Msa0194870:intron
TTGCCAAAGTTAAGGATTTG+TGG 0.428936 2_1:+11287664 None:intergenic
AGTAGTGAAGAGGAGACTAA+TGG 0.429345 2_1:+11290175 None:intergenic
ACCTATACTGAGGATTGAAT+GGG 0.438329 2_1:+11290639 None:intergenic
GATACGTAACTTCAATATAC+TGG 0.441167 2_1:-11289688 Msa0194870:CDS
CTTGCCATTTCTATGTCACT+TGG 0.444479 2_1:+11287541 None:intergenic
TCCTACAGACATTTATGTAC+TGG 0.448321 2_1:-11288703 Msa0194870:CDS
GTCAGAAAGGCAAACTCAAA+GGG 0.457107 2_1:+11290485 None:intergenic
GAGCCACAAATCCTTAACTT+TGG 0.459120 2_1:-11287667 Msa0194870:CDS
TTCTAGTCATATACTCAGCT+TGG 0.460135 2_1:-11290514 Msa0194870:CDS
GCTGTGCTGCCTGTGCATAA+GGG 0.463710 2_1:-11287862 Msa0194870:CDS
GCTATGTTTCAGACTCGAAA+AGG 0.469567 2_1:-11289975 Msa0194870:intron
ATAATAGACAACATTGTCAA+TGG 0.473596 2_1:-11290440 Msa0194870:CDS
ATGATCTTCCAAAGGCGATT+CGG 0.475082 2_1:-11288999 Msa0194870:CDS
GGAAGTCATTGGAGACTCCT+TGG 0.475455 2_1:+11288923 None:intergenic
TTCTCCATCCACTTGGCGAA+TGG 0.477586 2_1:+11287494 None:intergenic
ACTACTTATGACAGTGAGCT+TGG 0.480046 2_1:-11290158 Msa0194870:CDS
CTCAACCCGAAACAGTAAAC+AGG 0.480735 2_1:-11287635 Msa0194870:CDS
AGTGATCTTCTACCATCTCT+TGG 0.481192 2_1:-11290707 Msa0194870:CDS
GTAGTGAAGAGGAGACTAAT+GGG 0.481646 2_1:+11290176 None:intergenic
TTGTCCAAGTGACATAGAAA+TGG 0.483298 2_1:-11287545 Msa0194870:CDS
GAATATCCACACACAGATCA+TGG 0.487220 2_1:-11288090 Msa0194870:CDS
TGTTGGCACACATTTGTTTG+AGG 0.487645 2_1:-11289059 Msa0194870:CDS
ACAGAGAACTGACTCGTCTC+AGG 0.489086 2_1:+11290102 None:intergenic
TTTCGTCCAACCAGAACCTC+TGG 0.495129 2_1:+11290768 None:intergenic
TTCCTTTGGTGGGAAATACT+CGG 0.496198 2_1:+11288749 None:intergenic
AGTATCACATCTTCCTTTGG+TGG 0.498761 2_1:+11288738 None:intergenic
AGGTAGACCTTCTGCACGAC+AGG 0.500630 2_1:+11288949 None:intergenic
CTTCTTCCAGAGGTTCTGGT+TGG 0.501625 2_1:-11290774 Msa0194870:CDS
CCCCATTCAATCCTCAGTAT+AGG 0.503381 2_1:-11290640 Msa0194870:intron
GATCATCTCTTTCTTATTGG+CGG 0.505634 2_1:-11287060 Msa0194870:CDS
ACCCTGATTCCAAAAGAACT+TGG 0.507181 2_1:-11289757 Msa0194870:CDS
TGACTAACCTTGTAGTTCAC+TGG 0.508132 2_1:-11289541 Msa0194870:CDS
CTCCTTCATGCATTAAGGAA+TGG 0.509079 2_1:+11287995 None:intergenic
TATTTAGGTTGTTCTAATGG+TGG 0.509646 2_1:+11291224 None:intergenic
GAGGTAGAATTCTATGGACT+TGG 0.511960 2_1:+11290888 None:intergenic
CAATCCATTCGCCAAGTGGA+TGG 0.515545 2_1:-11287498 Msa0194870:CDS
ATCTCGTTCACTGCATTGAT+GGG 0.518997 2_1:-11288560 Msa0194870:CDS
TTGGTTCTATATAAATTGCT+AGG 0.520308 2_1:-11288066 Msa0194870:CDS
TTGTTTGCAGTGCACTGTGC+AGG 0.521813 2_1:-11289809 Msa0194870:CDS
TTTGTTCGGGCGCCAAGAGA+TGG 0.523096 2_1:+11290695 None:intergenic
ATCGTCACGCTTACTACCAC+TGG 0.523432 2_1:-11289662 Msa0194870:CDS
CGTCAGAAAGGCAAACTCAA+AGG 0.525022 2_1:+11290484 None:intergenic
CTGTGCTGCCTGTGCATAAG+GGG 0.526246 2_1:-11287861 Msa0194870:CDS
TGGGGTATACCAGTTGGAAA+AGG 0.533184 2_1:+11288902 None:intergenic
CACTGTCATAAGTAGTGAAG+AGG 0.536117 2_1:+11290165 None:intergenic
ACTTACATGCTGTTCAACTT+GGG 0.543072 2_1:-11289590 Msa0194870:CDS
TCTGTAGTTCGAACTGTGAA+AGG 0.543170 2_1:+11288354 None:intergenic
TCTAGTTTCCCCTTATGCAC+AGG 0.544175 2_1:+11287853 None:intergenic
GAGTCAGTTCTCTGTTTGCA+AGG 0.546900 2_1:-11290094 Msa0194870:intron
TGGTTGGACGAAATGGAAAT+GGG 0.547226 2_1:-11290758 Msa0194870:CDS
GACATTGATGTCATTAGAGA+TGG 0.549773 2_1:-11287084 Msa0194870:CDS
TGCACAGTGCACTGCAAACA+AGG 0.552915 2_1:+11289811 None:intergenic
ACGCTTACTACCACTGGCTA+TGG 0.553126 2_1:-11289656 Msa0194870:CDS
GCACAGAACCCAAATACCAT+AGG 0.553388 2_1:-11287796 Msa0194870:CDS
GAACGTAAGCACGATGTCGA+TGG 0.554490 2_1:+11290409 None:intergenic
CATGTAGTTACATGTCCACC+TGG 0.555978 2_1:-11290235 Msa0194870:intron
AATCCTCAAAGCTTCAAAAG+AGG 0.556400 2_1:+11290839 None:intergenic
TCTTGGCGCCCGAACAAACC+AGG 0.556962 2_1:-11290690 Msa0194870:CDS
GTATCACATCTTCCTTTGGT+GGG 0.558039 2_1:+11288739 None:intergenic
TGTTTGAGGTTTAAAACAGA+AGG 0.561867 2_1:-11289045 Msa0194870:CDS
GGGTACAAAGAAGCTGCAAA+TGG 0.566698 2_1:+11291189 None:intergenic
CATTGGAGACTCCTTGGAAG+AGG 0.567411 2_1:+11288929 None:intergenic
GGCCATTCCTTAATGCATGA+AGG 0.576044 2_1:-11287997 Msa0194870:CDS
AGGAGACTAATGGGCTCAAG+TGG 0.586925 2_1:+11290185 None:intergenic
GAGTCTACAAATAATTTACA+TGG 0.590590 2_1:-11288018 Msa0194870:CDS
CAGAAGGTCTACCTCTTCCA+AGG 0.591913 2_1:-11288940 Msa0194870:CDS
GCACAGGCAGCACAGCAGCA+TGG 0.592390 2_1:+11287869 None:intergenic
CACAGAACCCAAATACCATA+GGG 0.592525 2_1:-11287795 Msa0194870:CDS
GGCAAGGTTCACCAAGAAGA+GGG 0.593694 2_1:-11287524 Msa0194870:CDS
TCCACACACAGATCATGGAT+TGG 0.597717 2_1:-11288085 Msa0194870:CDS
CAGTTGGAAAAGGAAGTCAT+TGG 0.597745 2_1:+11288912 None:intergenic
GATTCCAAAAGAACTTGGAT+AGG 0.601551 2_1:-11289752 Msa0194870:CDS
GGATGGAGAAGTAGCTCACA+TGG 0.605702 2_1:-11287481 Msa0194870:CDS
AGCATTAAATGATCTTCCAA+AGG 0.608942 2_1:-11289007 Msa0194870:CDS
GAGCTACTTCTCCATCCACT+TGG 0.609891 2_1:+11287487 None:intergenic
AGCCGAGTATTTCCCACCAA+AGG 0.611493 2_1:-11288751 Msa0194870:CDS
TGGCAAGGTTCACCAAGAAG+AGG 0.615773 2_1:-11287525 Msa0194870:CDS
TCGCGTACACAATCAAATGT+TGG 0.618917 2_1:-11289076 Msa0194870:CDS
CAGAGATTAAAGGAGCGTGA+AGG 0.621845 2_1:-11288123 Msa0194870:CDS
ATTTGATTGTGTACGCGACG+TGG 0.622706 2_1:+11289081 None:intergenic
TGTACTGGTTTCAGGCGCAG+TGG 0.622748 2_1:-11288688 Msa0194870:intron
GTTCGAACTGTGAAAGGCTG+TGG 0.623207 2_1:+11288360 None:intergenic
GACTGGTCCAGTGAACTACA+AGG 0.630276 2_1:+11289534 None:intergenic
AGTAGCTCACATGGACAGCA+CGG 0.633141 2_1:-11287472 Msa0194870:CDS
CAAGTGACATAGAAATGGCA+AGG 0.635277 2_1:-11287540 Msa0194870:CDS
AATAACATGATACCTGAGGA+TGG 0.636817 2_1:-11287904 Msa0194870:CDS
ATCCAAAGAAAATTGCAACC+AGG 0.642767 2_1:-11290343 Msa0194870:intron
ACCAGTACATAAATGTCTGT+AGG 0.647308 2_1:+11288702 None:intergenic
GCTCTTCTAATGAATCAGGT+AGG 0.648781 2_1:+11287437 None:intergenic
GTAACAATCCATTCGCCAAG+TGG 0.651845 2_1:-11287502 Msa0194870:CDS
CCCTAATAACATGATACCTG+AGG 0.670461 2_1:-11287908 Msa0194870:CDS
ACCAATCCATGATCTGTGTG+TGG 0.672562 2_1:+11288084 None:intergenic
GCAGATATCCAAAACAAACC+AGG 0.680140 2_1:+11290217 None:intergenic
AGAACCCAAATACCATAGGG+TGG 0.680575 2_1:-11287792 Msa0194870:CDS
ATGTAAATCTCCATAGCCAG+TGG 0.680944 2_1:+11289646 None:intergenic
TCAGAAAGGCAAACTCAAAG+GGG 0.689808 2_1:+11290486 None:intergenic
CCTATACTGAGGATTGAATG+GGG 0.693402 2_1:+11290640 None:intergenic
ACCCGAAACAGTAAACAGGA+CGG 0.696148 2_1:-11287631 Msa0194870:CDS
AAAGGTCATCACCTATACTG+AGG 0.699640 2_1:+11290629 None:intergenic
GAAGAGAAGAATGACTATCG+TGG 0.704476 2_1:+11290375 None:intergenic
GATATCCAAAACAAACCAGG+TGG 0.711945 2_1:+11290220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCATAAAAATAAAAAG+GGG + chr2_1:11290979-11290998 None:intergenic 10.0%
!! CAAAAATCATAAAAATAAAA+AGG + chr2_1:11290981-11291000 None:intergenic 10.0%
!! AAATTAAGTTTATAAATGAG+TGG + chr2_1:11287255-11287274 None:intergenic 15.0%
!! TTTCATGTATAATTTATTAC+AGG - chr2_1:11287705-11287724 Msa0194870:CDS 15.0%
!! TATAAAATTATTATAGCATG+TGG + chr2_1:11288825-11288844 None:intergenic 15.0%
!!! ATTTTATATTATACATGTGT+TGG - chr2_1:11288837-11288856 Msa0194870:intron 15.0%
!! AATAAAATAAAAAGACATGT+GGG + chr2_1:11289384-11289403 None:intergenic 15.0%
!! AAATAAAATAAAAAGACATG+TGG + chr2_1:11289385-11289404 None:intergenic 15.0%
!! ATATCTTAATTACCATTAAA+AGG + chr2_1:11290023-11290042 None:intergenic 15.0%
!! TTATATTTATCAATCATAGT+AGG - chr2_1:11290084-11290103 Msa0194870:intron 15.0%
!! AAATCATAAAAATAAAAAGG+GGG + chr2_1:11290978-11290997 None:intergenic 15.0%
!!! CTCTTTATTAATTATTTTTG+TGG + chr2_1:11291145-11291164 None:intergenic 15.0%
!! TATAATTTATTACAGGCTTT+GGG - chr2_1:11287712-11287731 Msa0194870:CDS 20.0%
!! TTATATCTATATATATCACC+TGG + chr2_1:11287942-11287961 None:intergenic 20.0%
!! AGAAATTTGAAAAGTAAGTA+GGG + chr2_1:11288003-11288022 None:intergenic 20.0%
!! TAGAAATTTGAAAAGTAAGT+AGG + chr2_1:11288004-11288023 None:intergenic 20.0%
!!! GACTTTGTTCTTTAAAATTT+GGG + chr2_1:11288547-11288566 None:intergenic 20.0%
!!! AGACTTTGTTCTTTAAAATT+TGG + chr2_1:11288548-11288567 None:intergenic 20.0%
!!! ATTTTAAAGAACAAAGTCTT+TGG - chr2_1:11288549-11288568 Msa0194870:intron 20.0%
!!! TTTTAAAGAACAAAGTCTTT+GGG - chr2_1:11288550-11288569 Msa0194870:intron 20.0%
!!! GAAAGTACTTACAAAATTTT+GGG + chr2_1:11288759-11288778 None:intergenic 20.0%
!!! TGAAAGTACTTACAAAATTT+TGG + chr2_1:11288760-11288779 None:intergenic 20.0%
!! ATAAAATAAAAAGACATGTG+GGG + chr2_1:11289383-11289402 None:intergenic 20.0%
!!! CATTCTTTAAGATTCATTTA+TGG + chr2_1:11289633-11289652 None:intergenic 20.0%
!! ACAATCAAAATTTCTTGAAT+TGG + chr2_1:11290703-11290722 None:intergenic 20.0%
!! AATCATAAAAATAAAAAGGG+GGG + chr2_1:11290977-11290996 None:intergenic 20.0%
!!! TATTTTTATGATTTTTGCTG+AGG - chr2_1:11290984-11291003 Msa0194870:intron 20.0%
!!! ATTTTTATGATTTTTGCTGA+GGG - chr2_1:11290985-11291004 Msa0194870:intron 20.0%
!!! TTCTATTTAGGTTGTTCTAA+TGG + chr2_1:11287046-11287065 None:intergenic 25.0%
!!! ATTTTTGGATTTCAAAGAGA+GGG + chr2_1:11287098-11287117 None:intergenic 25.0%
!! GATTTTCTTACATATGCATT+TGG + chr2_1:11287125-11287144 None:intergenic 25.0%
!!! TCTTTTATTTCAGCTTTACA+AGG - chr2_1:11287309-11287328 Msa0194870:intron 25.0%
!!! GTTAAGTTTTTCAATTCATG+AGG + chr2_1:11287398-11287417 None:intergenic 25.0%
!! TATTATGTATTTTCGTAGTC+TGG + chr2_1:11287603-11287622 None:intergenic 25.0%
! AAGAATTGTGACTATGTAAA+AGG + chr2_1:11287656-11287675 None:intergenic 25.0%
! GTATAATTTATTACAGGCTT+TGG - chr2_1:11287711-11287730 Msa0194870:CDS 25.0%
! ATAATAGACAACATTGTCAA+TGG - chr2_1:11287824-11287843 Msa0194870:CDS 25.0%
!!! GACATTCATTTTAGTTTCTA+AGG + chr2_1:11287974-11287993 None:intergenic 25.0%
! TGAAATTAAATTTGACATGC+TGG + chr2_1:11288200-11288219 None:intergenic 25.0%
!! GCATGTCAAATTTAATTTCA+TGG - chr2_1:11288200-11288219 Msa0194870:intron 25.0%
!! CAAATTTAATTTCATGGTTC+TGG - chr2_1:11288206-11288225 Msa0194870:intron 25.0%
! TTGAAATTGTATAGGAAGTA+GGG + chr2_1:11288387-11288406 None:intergenic 25.0%
! TTCCTCTTTCAAAAAATTTC+AGG - chr2_1:11288427-11288446 Msa0194870:intron 25.0%
!!! TACCTGAAATTTTTTGAAAG+AGG + chr2_1:11288432-11288451 None:intergenic 25.0%
! GATATCAAATAACATCTCTA+TGG + chr2_1:11288654-11288673 None:intergenic 25.0%
!!! TAACTTTTTGAACATTGGTT+TGG + chr2_1:11288908-11288927 None:intergenic 25.0%
!! GTAACTAACTTTTTGAACAT+TGG + chr2_1:11288913-11288932 None:intergenic 25.0%
! TAGCTGACAAAAATAACTTA+TGG + chr2_1:11289026-11289045 None:intergenic 25.0%
!! TAATAAGAGAGGATTCATTT+TGG - chr2_1:11289106-11289125 Msa0194870:CDS 25.0%
! TATATCATTAGAGTTACTTG+GGG + chr2_1:11289478-11289497 None:intergenic 25.0%
! CTATATCATTAGAGTTACTT+GGG + chr2_1:11289479-11289498 None:intergenic 25.0%
! AATGATATAGGTTTCAGAAA+TGG - chr2_1:11289489-11289508 Msa0194870:intron 25.0%
! TGAATTGTTAATGTAAGGAT+AGG + chr2_1:11289820-11289839 None:intergenic 25.0%
! TATCCTTACATTAACAATTC+AGG - chr2_1:11289819-11289838 Msa0194870:intron 25.0%
!! TGTGATGAATAACCTTTTAA+TGG - chr2_1:11290008-11290027 Msa0194870:intron 25.0%
!!! TTGGTTCTATATAAATTGCT+AGG - chr2_1:11290198-11290217 Msa0194870:CDS 25.0%
! GAGTCTACAAATAATTTACA+TGG - chr2_1:11290246-11290265 Msa0194870:intron 25.0%
!!! CAGATTATTGCATTTGATTT+TGG + chr2_1:11291029-11291048 None:intergenic 25.0%
!! TATTTAGGTTGTTCTAATGG+TGG + chr2_1:11287043-11287062 None:intergenic 30.0%
TGGTGTTTCTTGTTCTATTT+AGG + chr2_1:11287058-11287077 None:intergenic 30.0%
!! CATTTTTGGATTTCAAAGAG+AGG + chr2_1:11287099-11287118 None:intergenic 30.0%
! TATGCATTTGGAGACATTTT+TGG + chr2_1:11287113-11287132 None:intergenic 30.0%
AGAAATAGAAGGAAAGATGA+TGG + chr2_1:11287179-11287198 None:intergenic 30.0%
AAAGCTTGTGAAGAAATAGA+AGG + chr2_1:11287190-11287209 None:intergenic 30.0%
! CTTTATTTGTTGAGACAAAG+TGG - chr2_1:11287206-11287225 Msa0194870:intron 30.0%
ATAAATGAGTGGTAAAAACG+TGG + chr2_1:11287244-11287263 None:intergenic 30.0%
TGAAAGTCTGGCTATAAATA+TGG - chr2_1:11287353-11287372 Msa0194870:intron 30.0%
ATTCATGAGGTAGAATTCTA+TGG + chr2_1:11287385-11287404 None:intergenic 30.0%
! ATTTTGCTTATACGTCAGAA+AGG + chr2_1:11287795-11287814 None:intergenic 30.0%
TTTCTGACGTATAAGCAAAA+TGG - chr2_1:11287794-11287813 Msa0194870:CDS 30.0%
TTCTTAACATGTTGCGATTA+TGG - chr2_1:11288137-11288156 Msa0194870:intron 30.0%
TGAAATTGTATAGGAAGTAG+GGG + chr2_1:11288386-11288405 None:intergenic 30.0%
CTTGAAATTGTATAGGAAGT+AGG + chr2_1:11288388-11288407 None:intergenic 30.0%
CTACTTCCTATACAATTTCA+AGG - chr2_1:11288386-11288405 Msa0194870:CDS 30.0%
GATACGTAACTTCAATATAC+TGG - chr2_1:11288576-11288595 Msa0194870:intron 30.0%
AAATTATTATAGCATGTGGC+TGG + chr2_1:11288821-11288840 None:intergenic 30.0%
!! GTTTGGATAATAGCTTTGAA+GGG + chr2_1:11288891-11288910 None:intergenic 30.0%
GTTAGTTACAAATACAGTGT+AGG - chr2_1:11288924-11288943 Msa0194870:CDS 30.0%
AGATATACTTGACAATTGTG+GGG + chr2_1:11288956-11288975 None:intergenic 30.0%
CAGATATACTTGACAATTGT+GGG + chr2_1:11288957-11288976 None:intergenic 30.0%
TCAGATATACTTGACAATTG+TGG + chr2_1:11288958-11288977 None:intergenic 30.0%
TGAATCCTCTCTTATTAAGA+GGG + chr2_1:11289103-11289122 None:intergenic 30.0%
ATGAATCCTCTCTTATTAAG+AGG + chr2_1:11289104-11289123 None:intergenic 30.0%
! TGTTTGAGGTTTAAAACAGA+AGG - chr2_1:11289219-11289238 Msa0194870:intron 30.0%
AGCATTAAATGATCTTCCAA+AGG - chr2_1:11289257-11289276 Msa0194870:intron 30.0%
CCTATATCATTAGAGTTACT+TGG + chr2_1:11289480-11289499 None:intergenic 30.0%
CCAAGTAACTCTAATGATAT+AGG - chr2_1:11289477-11289496 Msa0194870:intron 30.0%
! ATCCCTAATGAATGTTTTAC+AGG - chr2_1:11289963-11289982 Msa0194870:CDS 30.0%
TGCCTGTAAAACATTCATTA+GGG + chr2_1:11289968-11289987 None:intergenic 30.0%
TTGCCTGTAAAACATTCATT+AGG + chr2_1:11289969-11289988 None:intergenic 30.0%
AAAGCTTCTAAACTCAACAT+GGG - chr2_1:11290045-11290064 Msa0194870:intron 30.0%
GATATAGATCACACATGATT+AGG + chr2_1:11290118-11290137 None:intergenic 30.0%
CTATATCTGACAGAGATTAA+AGG - chr2_1:11290131-11290150 Msa0194870:CDS 30.0%
TGCTTTCACAATACATTGTA+TGG + chr2_1:11290545-11290564 None:intergenic 30.0%
ACTAATGTTCCTCAGTTATA+GGG + chr2_1:11290880-11290899 None:intergenic 30.0%
AACTAATGTTCCTCAGTTAT+AGG + chr2_1:11290881-11290900 None:intergenic 30.0%
TAAAAATAAAAAGGGGGGTT+GGG + chr2_1:11290972-11290991 None:intergenic 30.0%
ATAAAAATAAAAAGGGGGGT+TGG + chr2_1:11290973-11290992 None:intergenic 30.0%
AAAACTGCAGGTGAAAAATT+TGG - chr2_1:11291108-11291127 Msa0194870:intron 30.0%
!! TAGAAGGAAAGATGATGGAA+TGG + chr2_1:11287174-11287193 None:intergenic 35.0%
! TATTTGTTGAGACAAAGTGG+AGG - chr2_1:11287209-11287228 Msa0194870:intron 35.0%
AAGGACAAGACATGAAAAAG+TGG - chr2_1:11287328-11287347 Msa0194870:intron 35.0%
GAAAAAGTGGTTTGAAAGTC+TGG - chr2_1:11287341-11287360 Msa0194870:intron 35.0%
!!! ATACCTCTTTTGAAGCTTTG+AGG - chr2_1:11287422-11287441 Msa0194870:CDS 35.0%
AATCCTCAAAGCTTCAAAAG+AGG + chr2_1:11287428-11287447 None:intergenic 35.0%
ACCTATACTGAGGATTGAAT+GGG + chr2_1:11287628-11287647 None:intergenic 35.0%
TTCTAGTCATATACTCAGCT+TGG - chr2_1:11287750-11287769 Msa0194870:CDS 35.0%
ATCCAAAGAAAATTGCAACC+AGG - chr2_1:11287921-11287940 Msa0194870:CDS 35.0%
ACATTCGCTTCAATTACTTC+TGG - chr2_1:11288312-11288331 Msa0194870:CDS 35.0%
CATTCGCTTCAATTACTTCT+GGG - chr2_1:11288313-11288332 Msa0194870:CDS 35.0%
GATGTGCCTTGAAATTGTAT+AGG + chr2_1:11288395-11288414 None:intergenic 35.0%
GAAAGAGGAAATTCAGTTCT+TGG + chr2_1:11288417-11288436 None:intergenic 35.0%
!!! TCCAAGTTCTTTTGGAATCA+GGG + chr2_1:11288511-11288530 None:intergenic 35.0%
!!! ATCCAAGTTCTTTTGGAATC+AGG + chr2_1:11288512-11288531 None:intergenic 35.0%
GATTCCAAAAGAACTTGGAT+AGG - chr2_1:11288512-11288531 Msa0194870:intron 35.0%
ACTTACATGCTGTTCAACTT+GGG - chr2_1:11288674-11288693 Msa0194870:intron 35.0%
GGTTTAACAGCATACATCAT+TGG - chr2_1:11288695-11288714 Msa0194870:CDS 35.0%
!! GGTTTGGATAATAGCTTTGA+AGG + chr2_1:11288892-11288911 None:intergenic 35.0%
TACAAATACAGTGTAGGACT+AGG - chr2_1:11288930-11288949 Msa0194870:CDS 35.0%
AACTTAACATGAAACTCGAG+AGG + chr2_1:11289001-11289020 None:intergenic 35.0%
CAAAAACTCGTTCAGATAAG+AGG - chr2_1:11289064-11289083 Msa0194870:CDS 35.0%
TTCTTCCCTCTTAATAAGAG+AGG - chr2_1:11289095-11289114 Msa0194870:CDS 35.0%
!!! TTCACTTTTTGTCTCTTCTC+CGG - chr2_1:11289406-11289425 Msa0194870:intron 35.0%
!!! CTTCTTGCTTTTAACTTAGC+CGG + chr2_1:11289428-11289447 None:intergenic 35.0%
TCCTACAGACATTTATGTAC+TGG - chr2_1:11289561-11289580 Msa0194870:CDS 35.0%
ACCAGTACATAAATGTCTGT+AGG + chr2_1:11289565-11289584 None:intergenic 35.0%
!! GACATTTATGTACTGGTTTC+AGG - chr2_1:11289568-11289587 Msa0194870:CDS 35.0%
CCACCTGAATTGTTAATGTA+AGG + chr2_1:11289825-11289844 None:intergenic 35.0%
CCTTACATTAACAATTCAGG+TGG - chr2_1:11289822-11289841 Msa0194870:intron 35.0%
! AATGTTTTACAGGCAAATCC+AGG - chr2_1:11289973-11289992 Msa0194870:intron 35.0%
CAAAGCTTCTAAACTCAACA+TGG - chr2_1:11290044-11290063 Msa0194870:intron 35.0%
AAGCTTCTAAACTCAACATG+GGG - chr2_1:11290046-11290065 Msa0194870:intron 35.0%
GATCACACATGATTAGGATT+AGG + chr2_1:11290112-11290131 None:intergenic 35.0%
CCTCAGGTATCATGTTATTA+GGG + chr2_1:11290359-11290378 None:intergenic 35.0%
TCCTCAGGTATCATGTTATT+AGG + chr2_1:11290360-11290379 None:intergenic 35.0%
AATAACATGATACCTGAGGA+TGG - chr2_1:11290360-11290379 Msa0194870:CDS 35.0%
TTGCCAAAGTTAAGGATTTG+TGG + chr2_1:11290603-11290622 None:intergenic 35.0%
ATCCTTAACTTTGGCAAGAA+TGG - chr2_1:11290606-11290625 Msa0194870:intron 35.0%
TCTGTGTACACTTTCTCTAA+TGG + chr2_1:11290678-11290697 None:intergenic 35.0%
TTGTCCAAGTGACATAGAAA+TGG - chr2_1:11290719-11290738 Msa0194870:CDS 35.0%
AAAAATAAAAAGGGGGGTTG+GGG + chr2_1:11290971-11290990 None:intergenic 35.0%
! TTATGATTTTTGCTGAGGGA+AGG - chr2_1:11290989-11291008 Msa0194870:intron 35.0%
! TATGATTTTTGCTGAGGGAA+GGG - chr2_1:11290990-11291009 Msa0194870:intron 35.0%
!! CTATTAACTTGCAAAACTGC+AGG - chr2_1:11291096-11291115 Msa0194870:intron 35.0%
GACATTGATGTCATTAGAGA+TGG - chr2_1:11291180-11291199 Msa0194870:five_prime_UTR 35.0%
GGTGATCATCTCTTTCTTAT+TGG - chr2_1:11291201-11291220 Msa0194870:five_prime_UTR 35.0%
GATCATCTCTTTCTTATTGG+CGG - chr2_1:11291204-11291223 Msa0194870:five_prime_UTR 35.0%
ATGAGTGGTAAAAACGTGGA+GGG + chr2_1:11287240-11287259 None:intergenic 40.0%
AATGAGTGGTAAAAACGTGG+AGG + chr2_1:11287241-11287260 None:intergenic 40.0%
GAGGTAGAATTCTATGGACT+TGG + chr2_1:11287379-11287398 None:intergenic 40.0%
!!! CTGGAAGAAGTTTTTGAGAC+TGG + chr2_1:11287480-11287499 None:intergenic 40.0%
GTCTCAAAAACTTCTTCCAG+AGG - chr2_1:11287480-11287499 Msa0194870:CDS 40.0%
AAAACTTCTTCCAGAGGTTC+TGG - chr2_1:11287486-11287505 Msa0194870:CDS 40.0%
TGGTTGGACGAAATGGAAAT+GGG - chr2_1:11287506-11287525 Msa0194870:CDS 40.0%
AGTGATCTTCTACCATCTCT+TGG - chr2_1:11287557-11287576 Msa0194870:CDS 40.0%
!! ATTTTCGTAGTCTGGTTTCC+TGG + chr2_1:11287595-11287614 None:intergenic 40.0%
CCTATACTGAGGATTGAATG+GGG + chr2_1:11287627-11287646 None:intergenic 40.0%
CACCTATACTGAGGATTGAA+TGG + chr2_1:11287629-11287648 None:intergenic 40.0%
AAAGGTCATCACCTATACTG+AGG + chr2_1:11287638-11287657 None:intergenic 40.0%
TCAGAAAGGCAAACTCAAAG+GGG + chr2_1:11287781-11287800 None:intergenic 40.0%
GTCAGAAAGGCAAACTCAAA+GGG + chr2_1:11287782-11287801 None:intergenic 40.0%
GAAGAGAAGAATGACTATCG+TGG + chr2_1:11287892-11287911 None:intergenic 40.0%
! CACCTGGTTGCAATTTTCTT+TGG + chr2_1:11287926-11287945 None:intergenic 40.0%
GATATCCAAAACAAACCAGG+TGG + chr2_1:11288047-11288066 None:intergenic 40.0%
GCAGATATCCAAAACAAACC+AGG + chr2_1:11288050-11288069 None:intergenic 40.0%
GTAGTGAAGAGGAGACTAAT+GGG + chr2_1:11288091-11288110 None:intergenic 40.0%
AGTAGTGAAGAGGAGACTAA+TGG + chr2_1:11288092-11288111 None:intergenic 40.0%
CACTGTCATAAGTAGTGAAG+AGG + chr2_1:11288102-11288121 None:intergenic 40.0%
ACTACTTATGACAGTGAGCT+TGG - chr2_1:11288106-11288125 Msa0194870:CDS 40.0%
! ACATAGCAAAGGTGCAAGTA+AGG + chr2_1:11288276-11288295 None:intergenic 40.0%
! TCGAGTCTGAAACATAGCAA+AGG + chr2_1:11288287-11288306 None:intergenic 40.0%
GCTATGTTTCAGACTCGAAA+AGG - chr2_1:11288289-11288308 Msa0194870:CDS 40.0%
GCTTCAATTACTTCTGGGTT+AGG - chr2_1:11288318-11288337 Msa0194870:CDS 40.0%
GGGGAGTTTATGAGGTTTAA+TGG + chr2_1:11288367-11288386 None:intergenic 40.0%
ACCCTGATTCCAAAAGAACT+TGG - chr2_1:11288507-11288526 Msa0194870:intron 40.0%
! AGCACCTATCCAAGTTCTTT+TGG + chr2_1:11288519-11288538 None:intergenic 40.0%
ATGTAAATCTCCATAGCCAG+TGG + chr2_1:11288621-11288640 None:intergenic 40.0%
CACTTACATGCTGTTCAACT+TGG - chr2_1:11288673-11288692 Msa0194870:intron 40.0%
TGACTAACCTTGTAGTTCAC+TGG - chr2_1:11288723-11288742 Msa0194870:CDS 40.0%
!! TACAAAATTTTGGGTGCGAC+TGG + chr2_1:11288750-11288769 None:intergenic 40.0%
AAACTCGAGAGGATTGTACT+AGG + chr2_1:11288990-11289009 None:intergenic 40.0%
!! AGGATTCATTTTGGTCACAG+AGG - chr2_1:11289115-11289134 Msa0194870:CDS 40.0%
!! GGATTCATTTTGGTCACAGA+GGG - chr2_1:11289116-11289135 Msa0194870:CDS 40.0%
TCGCGTACACAATCAAATGT+TGG - chr2_1:11289188-11289207 Msa0194870:intron 40.0%
TGTTGGCACACATTTGTTTG+AGG - chr2_1:11289205-11289224 Msa0194870:intron 40.0%
ATGATCTTCCAAAGGCGATT+CGG - chr2_1:11289265-11289284 Msa0194870:intron 40.0%
CAGTTGGAAAAGGAAGTCAT+TGG + chr2_1:11289355-11289374 None:intergenic 40.0%
! CAATGACTTCCTTTTCCAAC+TGG - chr2_1:11289353-11289372 Msa0194870:intron 40.0%
GGGTCAGATGTTGAAACTTT+AGG + chr2_1:11289458-11289477 None:intergenic 40.0%
TTCCTTTGGTGGGAAATACT+CGG + chr2_1:11289518-11289537 None:intergenic 40.0%
GTATCACATCTTCCTTTGGT+GGG + chr2_1:11289528-11289547 None:intergenic 40.0%
AGTATCACATCTTCCTTTGG+TGG + chr2_1:11289529-11289548 None:intergenic 40.0%
TGCAGTATCACATCTTCCTT+TGG + chr2_1:11289532-11289551 None:intergenic 40.0%
AATCTCGTTCACTGCATTGA+TGG - chr2_1:11289703-11289722 Msa0194870:CDS 40.0%
! ATCTCGTTCACTGCATTGAT+GGG - chr2_1:11289704-11289723 Msa0194870:CDS 40.0%
! TTTTGACAAAGCAACTGCAG+TGG - chr2_1:11289846-11289865 Msa0194870:intron 40.0%
TCTGTAGTTCGAACTGTGAA+AGG + chr2_1:11289913-11289932 None:intergenic 40.0%
GAATATCCACACACAGATCA+TGG - chr2_1:11290174-11290193 Msa0194870:CDS 40.0%
CTCCTTCATGCATTAAGGAA+TGG + chr2_1:11290272-11290291 None:intergenic 40.0%
GTTCTCTCCTTCATGCATTA+AGG + chr2_1:11290277-11290296 None:intergenic 40.0%
CCCTAATAACATGATACCTG+AGG - chr2_1:11290356-11290375 Msa0194870:CDS 40.0%
CACAGAACCCAAATACCATA+GGG - chr2_1:11290469-11290488 Msa0194870:CDS 40.0%
GAGCCACAAATCCTTAACTT+TGG - chr2_1:11290597-11290616 Msa0194870:intron 40.0%
AGCCATTCTTGCCAAAGTTA+AGG + chr2_1:11290611-11290630 None:intergenic 40.0%
TACCGTCCTGTTTACTGTTT+CGG + chr2_1:11290638-11290657 None:intergenic 40.0%
! CTTGCCATTTCTATGTCACT+TGG + chr2_1:11290726-11290745 None:intergenic 40.0%
CAAGTGACATAGAAATGGCA+AGG - chr2_1:11290724-11290743 Msa0194870:CDS 40.0%
! ATGGATTGTTACCCTCTTCT+TGG + chr2_1:11290754-11290773 None:intergenic 40.0%
GCTCTTCTAATGAATCAGGT+AGG + chr2_1:11290830-11290849 None:intergenic 40.0%
AGCAGCTCTTCTAATGAATC+AGG + chr2_1:11290834-11290853 None:intergenic 40.0%
! AGCATTGAACCCTATAACTG+AGG - chr2_1:11290868-11290887 Msa0194870:five_prime_UTR 40.0%
AAAATAAAAAGGGGGGTTGG+GGG + chr2_1:11290970-11290989 None:intergenic 40.0%
ACTGCAGGTGAAAAATTTGG+CGG - chr2_1:11291111-11291130 Msa0194870:intron 40.0%
GGGTACAAAGAAGCTGCAAA+TGG + chr2_1:11287078-11287097 None:intergenic 45.0%
GAATGGTAGAGTCTTGCTAG+TGG + chr2_1:11287157-11287176 None:intergenic 45.0%
CTGGTTGGACGAAATGGAAA+TGG - chr2_1:11287505-11287524 Msa0194870:CDS 45.0%
!! TCTGGTTTCCTGGTTTGTTC+GGG + chr2_1:11287585-11287604 None:intergenic 45.0%
!! GTCTGGTTTCCTGGTTTGTT+CGG + chr2_1:11287586-11287605 None:intergenic 45.0%
CCCCATTCAATCCTCAGTAT+AGG - chr2_1:11287624-11287643 Msa0194870:CDS 45.0%
CGTCAGAAAGGCAAACTCAA+AGG + chr2_1:11287783-11287802 None:intergenic 45.0%
CATGTAGTTACATGTCCACC+TGG - chr2_1:11288029-11288048 Msa0194870:CDS 45.0%
!!! CATGTCCACCTGGTTTGTTT+TGG - chr2_1:11288039-11288058 Msa0194870:CDS 45.0%
GAGTCAGTTCTCTGTTTGCA+AGG - chr2_1:11288170-11288189 Msa0194870:intron 45.0%
! GCAAGTAAGGAAGAAAGCAC+TGG + chr2_1:11288263-11288282 None:intergenic 45.0%
AGGAAGTAGGGGAGTTTATG+AGG + chr2_1:11288375-11288394 None:intergenic 45.0%
ATTTGATTGTGTACGCGACG+TGG + chr2_1:11289186-11289205 None:intergenic 45.0%
GCACGACAGGAAAAAAGAGA+TGG + chr2_1:11289305-11289324 None:intergenic 45.0%
!!! CTTTTTTCCTGTCGTGCAGA+AGG - chr2_1:11289308-11289327 Msa0194870:intron 45.0%
TGGGGTATACCAGTTGGAAA+AGG + chr2_1:11289365-11289384 None:intergenic 45.0%
!! GTGGAAGCATTTGGAGAGAT+TGG - chr2_1:11289865-11289884 Msa0194870:intron 45.0%
ATCACAATCTGTGCATCTCC+TGG + chr2_1:11289994-11290013 None:intergenic 45.0%
! CAGAGATTAAAGGAGCGTGA+AGG - chr2_1:11290141-11290160 Msa0194870:CDS 45.0%
TCCACACACAGATCATGGAT+TGG - chr2_1:11290179-11290198 Msa0194870:CDS 45.0%
ACCAATCCATGATCTGTGTG+TGG + chr2_1:11290183-11290202 None:intergenic 45.0%
GGCCATTCCTTAATGCATGA+AGG - chr2_1:11290267-11290286 Msa0194870:intron 45.0%
! AGATCTCTTTTGCCATCCTC+AGG + chr2_1:11290375-11290394 None:intergenic 45.0%
! TCTAGTTTCCCCTTATGCAC+AGG + chr2_1:11290414-11290433 None:intergenic 45.0%
GCACAGAACCCAAATACCAT+AGG - chr2_1:11290468-11290487 Msa0194870:CDS 45.0%
AGAACCCAAATACCATAGGG+TGG - chr2_1:11290472-11290491 Msa0194870:CDS 45.0%
GTGTCCACCCTATGGTATTT+GGG + chr2_1:11290479-11290498 None:intergenic 45.0%
TGTGTCCACCCTATGGTATT+TGG + chr2_1:11290480-11290499 None:intergenic 45.0%
! AGCTTTTTGTGTCCACCCTA+TGG + chr2_1:11290487-11290506 None:intergenic 45.0%
CTCAACCCGAAACAGTAAAC+AGG - chr2_1:11290629-11290648 Msa0194870:intron 45.0%
ACCCGAAACAGTAAACAGGA+CGG - chr2_1:11290633-11290652 Msa0194870:intron 45.0%
ACCGTCCTGTTTACTGTTTC+GGG + chr2_1:11290637-11290656 None:intergenic 45.0%
GTAACAATCCATTCGCCAAG+TGG - chr2_1:11290762-11290781 Msa0194870:CDS 45.0%
GAAGAGCTGCTCAAAATTGC+TGG - chr2_1:11290843-11290862 Msa0194870:five_prime_UTR 45.0%
AAATAAAAAGGGGGGTTGGG+GGG + chr2_1:11290969-11290988 None:intergenic 45.0%
!! AAAAATCATAAAAATAAAAA+GGG + chr2_1:11290980-11290999 None:intergenic 5.0%
! CTTCTTCCAGAGGTTCTGGT+TGG - chr2_1:11287490-11287509 Msa0194870:CDS 50.0%
TTTCGTCCAACCAGAACCTC+TGG + chr2_1:11287499-11287518 None:intergenic 50.0%
! GAGGTTCTGGTTGGACGAAA+TGG - chr2_1:11287499-11287518 Msa0194870:CDS 50.0%
GAACGTAAGCACGATGTCGA+TGG + chr2_1:11287858-11287877 None:intergenic 50.0%
!! AGGAGACTAATGGGCTCAAG+TGG + chr2_1:11288082-11288101 None:intergenic 50.0%
!! ACAGAGAACTGACTCGTCTC+AGG + chr2_1:11288165-11288184 None:intergenic 50.0%
TGCACAGTGCACTGCAAACA+AGG + chr2_1:11288456-11288475 None:intergenic 50.0%
TTGTTTGCAGTGCACTGTGC+AGG - chr2_1:11288455-11288474 Msa0194870:intron 50.0%
ATCGTCACGCTTACTACCAC+TGG - chr2_1:11288602-11288621 Msa0194870:intron 50.0%
! ACGCTTACTACCACTGGCTA+TGG - chr2_1:11288608-11288627 Msa0194870:intron 50.0%
! GACTGGTCCAGTGAACTACA+AGG + chr2_1:11288733-11288752 None:intergenic 50.0%
TTATAGCATGTGGCTGGCAC+AGG + chr2_1:11288815-11288834 None:intergenic 50.0%
ATGCTTGACCGAATCGCCTT+TGG + chr2_1:11289276-11289295 None:intergenic 50.0%
CAGAAGGTCTACCTCTTCCA+AGG - chr2_1:11289324-11289343 Msa0194870:intron 50.0%
CATTGGAGACTCCTTGGAAG+AGG + chr2_1:11289338-11289357 None:intergenic 50.0%
GGAAGTCATTGGAGACTCCT+TGG + chr2_1:11289344-11289363 None:intergenic 50.0%
GACATGTGGGGTATACCAGT+TGG + chr2_1:11289371-11289390 None:intergenic 50.0%
AGCCGAGTATTTCCCACCAA+AGG - chr2_1:11289513-11289532 Msa0194870:intron 50.0%
! GTGGTGAGTTGGCTAAAGCA+TGG - chr2_1:11289595-11289614 Msa0194870:CDS 50.0%
!! GCAACTGCAGTGGAAGCATT+TGG - chr2_1:11289856-11289875 Msa0194870:intron 50.0%
GTTCGAACTGTGAAAGGCTG+TGG + chr2_1:11289907-11289926 None:intergenic 50.0%
TGGCAAGGTTCACCAAGAAG+AGG - chr2_1:11290739-11290758 Msa0194870:CDS 50.0%
GGCAAGGTTCACCAAGAAGA+GGG - chr2_1:11290740-11290759 Msa0194870:CDS 50.0%
CAATCCATTCGCCAAGTGGA+TGG - chr2_1:11290766-11290785 Msa0194870:CDS 50.0%
TTCTCCATCCACTTGGCGAA+TGG + chr2_1:11290773-11290792 None:intergenic 50.0%
GAGCTACTTCTCCATCCACT+TGG + chr2_1:11290780-11290799 None:intergenic 50.0%
GGATGGAGAAGTAGCTCACA+TGG - chr2_1:11290783-11290802 Msa0194870:CDS 50.0%
AGTAGCTCACATGGACAGCA+CGG - chr2_1:11290792-11290811 Msa0194870:CDS 50.0%
ACACACGCATACACACACGT+GGG - chr2_1:11290903-11290922 Msa0194870:five_prime_UTR 50.0%
TACACACACGTGGGAGAGAA+TGG - chr2_1:11290912-11290931 Msa0194870:five_prime_UTR 50.0%
AATAAAAAGGGGGGTTGGGG+GGG + chr2_1:11290968-11290987 None:intergenic 50.0%
TTTGTTCGGGCGCCAAGAGA+TGG + chr2_1:11287572-11287591 None:intergenic 55.0%
AGGTAGACCTTCTGCACGAC+AGG + chr2_1:11289318-11289337 None:intergenic 55.0%
!! TGTACTGGTTTCAGGCGCAG+TGG - chr2_1:11289576-11289595 Msa0194870:CDS 55.0%
TTTCAGGCGCAGTGGTGAGT+TGG - chr2_1:11289584-11289603 Msa0194870:CDS 55.0%
TGCTGTGCTGCCTGTGCATA+AGG - chr2_1:11290401-11290420 Msa0194870:CDS 55.0%
GCTGTGCTGCCTGTGCATAA+GGG - chr2_1:11290402-11290421 Msa0194870:CDS 55.0%
CTGTGCTGCCTGTGCATAAG+GGG - chr2_1:11290403-11290422 Msa0194870:CDS 55.0%
GACACACGCATACACACACG+TGG - chr2_1:11290902-11290921 Msa0194870:five_prime_UTR 55.0%
ATAAAAAGGGGGGTTGGGGG+GGG + chr2_1:11290967-11290986 None:intergenic 55.0%
TCTTGGCGCCCGAACAAACC+AGG - chr2_1:11287574-11287593 Msa0194870:CDS 60.0%
TAAAAAGGGGGGTTGGGGGG+GGG + chr2_1:11290966-11290985 None:intergenic 60.0%
GCACAGGCAGCACAGCAGCA+TGG + chr2_1:11290398-11290417 None:intergenic 65.0%
AAAAAGGGGGGTTGGGGGGG+GGG + chr2_1:11290965-11290984 None:intergenic 65.0%
AAAAGGGGGGTTGGGGGGGG+GGG + chr2_1:11290964-11290983 None:intergenic 70.0%
AAAGGGGGGTTGGGGGGGGG+GGG + chr2_1:11290963-11290982 None:intergenic 75.0%
! AAGGGGGGTTGGGGGGGGGG+GGG + chr2_1:11290962-11290981 None:intergenic 80.0%
! AGGGGGGTTGGGGGGGGGGG+GGG + chr2_1:11290961-11290980 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG + chr2_1:11290954-11290973 None:intergenic 90.0%
! GTTGGGGGGGGGGGGGGGGG+GGG + chr2_1:11290955-11290974 None:intergenic 90.0%
! GGTTGGGGGGGGGGGGGGGG+GGG + chr2_1:11290956-11290975 None:intergenic 90.0%
! GGGTTGGGGGGGGGGGGGGG+GGG + chr2_1:11290957-11290976 None:intergenic 90.0%
! GGGGTTGGGGGGGGGGGGGG+GGG + chr2_1:11290958-11290977 None:intergenic 90.0%
! GGGGGTTGGGGGGGGGGGGG+GGG + chr2_1:11290959-11290978 None:intergenic 90.0%
! GGGGGGTTGGGGGGGGGGGG+GGG + chr2_1:11290960-11290979 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11287035 11291251 11287035 ID=Msa0194870;Name=Msa0194870
chr2_1 mRNA 11287035 11291251 11287035 ID=Msa0194870-mRNA-1;Parent=Msa0194870;Name=Msa0194870-mRNA-1;_AED=0.14;_eAED=0.14;_QI=244|0.45|0.33|1|0.90|0.83|12|0|780
chr2_1 exon 11287035 11287168 11287035 ID=Msa0194870-mRNA-1:exon:5042;Parent=Msa0194870-mRNA-1
chr2_1 exon 11287422 11288142 11287422 ID=Msa0194870-mRNA-1:exon:5041;Parent=Msa0194870-mRNA-1
chr2_1 exon 11288257 11288445 11288257 ID=Msa0194870-mRNA-1:exon:5040;Parent=Msa0194870-mRNA-1
chr2_1 exon 11288551 11288583 11288551 ID=Msa0194870-mRNA-1:exon:5039;Parent=Msa0194870-mRNA-1
chr2_1 exon 11288689 11288787 11288689 ID=Msa0194870-mRNA-1:exon:5038;Parent=Msa0194870-mRNA-1
chr2_1 exon 11288912 11289151 11288912 ID=Msa0194870-mRNA-1:exon:5037;Parent=Msa0194870-mRNA-1
chr2_1 exon 11289520 11289837 11289520 ID=Msa0194870-mRNA-1:exon:5036;Parent=Msa0194870-mRNA-1
chr2_1 exon 11289928 11289985 11289928 ID=Msa0194870-mRNA-1:exon:5035;Parent=Msa0194870-mRNA-1
chr2_1 exon 11290095 11290250 11290095 ID=Msa0194870-mRNA-1:exon:5034;Parent=Msa0194870-mRNA-1
chr2_1 exon 11290344 11290559 11290344 ID=Msa0194870-mRNA-1:exon:5033;Parent=Msa0194870-mRNA-1
chr2_1 exon 11290641 11290964 11290641 ID=Msa0194870-mRNA-1:exon:5032;Parent=Msa0194870-mRNA-1
chr2_1 exon 11291153 11291251 11291153 ID=Msa0194870-mRNA-1:exon:5031;Parent=Msa0194870-mRNA-1
chr2_1 five_prime_UTR 11291153 11291251 11291153 ID=Msa0194870-mRNA-1:five_prime_utr;Parent=Msa0194870-mRNA-1
chr2_1 five_prime_UTR 11290820 11290964 11290820 ID=Msa0194870-mRNA-1:five_prime_utr;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11290641 11290819 11290641 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11290344 11290559 11290344 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11290095 11290250 11290095 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11289928 11289985 11289928 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11289520 11289837 11289520 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11288912 11289151 11288912 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11288689 11288787 11288689 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11288551 11288583 11288551 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11288257 11288445 11288257 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11287422 11288142 11287422 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
chr2_1 CDS 11287035 11287168 11287035 ID=Msa0194870-mRNA-1:cds;Parent=Msa0194870-mRNA-1
Gene Sequence

>Msa0194870

ATGTCATTTTCCAGTCTCAAAAACTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCCCGAACAAACCAGGAAACCAGACTACGAAAATACATAATATCCCCATTCAATCCTCAGTATAGGCTTTGGGAGTTGTTACTGATTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACGTATAAGCAAAATGGACTATTCATAATAGACAACATTGTCAATGGCTTCTTTGCCATCGACATCGTGCTTACGTTCTTCGTTGCATACCACGATAGTCATTCTTCTCTTCTCATTGATGATCCAAAGAAAATTGCAACCAGTTACATGTCCACCTGGTTTGTTTTGGATATCTGCTCAACAGCACCACTTGAGCCCATTAGTCTCCTCTTCACTACTTATGACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTACTTCTGGGTTAGGTGTACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTACTTGCAGATATGTACCCTGATTCCAAAAGAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAACAAAGTCTTTGGGACAGATACGTAACTTCAATATACTGGTCTATCGTCACGCTTACTACCACTGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGTTATTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACAGCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCAAAATTTTAGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACGTCGCGTACACAATCAAATGTTGGCACACATTTGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCGATTCGGTCAAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCAATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCCGAGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACATTTATGTACTGGTTTCAGGCGCAGTGAATCTCGTTCACTGCATTGATGGGAATGATCAAGTGGTTTTTGACAAAGCAACTGCAGTGGAAGCATTTGGAGAGATTGGAGTTTTATATAATGTACCACAGCCTTTCACAGTTCGAACTACAGAGCTTTCTCAGATTTTAAGAATCAACAGAACATCCCTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAGATTGTGATGAATAACCTTTTAATGAGATTAAAGGAGCGTGAAGGATTCGACTCTGAATATCCACACACAGATCATGGATTGGTTCTATATAAATTGCTAGGTAACACAAAAGAAAGCTCTTCTCAAGAGTCTACAAATAATTTACATGGCCATTCCTTAATGCATGAAGGAGAGAACATAAATATCAGAGACTCACAGAATAATTTGCATATTGTGACTAATGATGTTTATTCAGACCCTAATAACATGATACCTGAGGATGGCAAAAGAGATCTCCATGCTGCTGTGCTGCCTGTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGATTGAAAGAGATGCAAAAGCACAGAACCCAAATACCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCACTTCTGACCATACAATGTATTGTGAAAGCAAAAAATCAGATGAACATAGAATAGAGATTGTTGAGCCACAAATCCTTAACTTTGGCAAGAATGGCTCAACCCGAAACAGTAAACAGGACGGTATTAGAAATATCAACTTTCCATTAGAGAAAGTGTACACAGACACCAATTCAAGAAATTTTGATTGTCCAAGTGACATAGAAATGGCAAGGTTCACCAAGAAGAGGGTAACAATCCATTCGCCAAGTGGATGGAGAAGTAGCTCACATGGACAGCACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAATGCCACAAAAATAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTAGAGATGGTGATCATCTCTTTCTTATTGGCGGTGATATTGACAATTTGAACTCATGA
Protein sequence

>Msa0194870

MSFSSLKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGARTNQETRLRKYIISPFNPQYRLWELLLIVLVIYSAWICPFEFAFLTYKQNGLFIIDNIVNGFFAIDIVLTFFVAYHDSHSSLLIDDPKKIATSYMSTWFVLDICSTAPLEPISLLFTTYDSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCFNYLLADMYPDSKRTWIGAMYPNFKEQSLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTAYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPRRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSNDFLFQLVSEMEAEYFPPKEDVILQNESPTDIYVLVSGAVNLVHCIDGNDQVVFDKATAVEAFGEIGVLYNVPQPFTVRTTELSQILRINRTSLMNVLQANPGDAQIVMNNLLMRLKEREGFDSEYPHTDHGLVLYKLLGNTKESSSQESTNNLHGHSLMHEGENINIRDSQNNLHIVTNDVYSDPNNMIPEDGKRDLHAAVLPVHKGKLDIVEILIERDAKAQNPNTIGWTQKALVQQLKNKSTSDHTMYCESKKSDEHRIEIVEPQILNFGKNGSTRNSKQDGIRNINFPLEKVYTDTNSRNFDCPSDIEMARFTKKRVTIHSPSGWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNATKIINKENAEIDDIDVIRDGDHLFLIGGDIDNLNS*