AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315390 MtrunA17_Chr2g0286031 90.308 681 22 4 132 780 16 684 0.0 1250
Msa0315390 MtrunA17_Chr8g0356081 57.253 779 248 7 1 779 1 694 0.0 864
Msa0315390 MtrunA17_Chr4g0063141 62.012 487 180 3 16 500 11 494 0.0 621
Msa0315390 MtrunA17_Chr4g0063141 27.303 304 164 11 511 772 582 870 8.26e-14 75.5
Msa0315390 MtrunA17_Chr2g0277651 41.516 831 390 17 16 776 25 829 0.0 578
Msa0315390 MtrunA17_Chr1g0148981 48.790 537 212 6 24 500 23 556 4.21e-168 511
Msa0315390 MtrunA17_Chr3g0138671 47.529 526 270 5 29 549 21 545 1.76e-158 474
Msa0315390 MtrunA17_Chr3g0138131 53.964 391 174 3 34 421 46 433 2.61e-143 430
Msa0315390 MtrunA17_Chr5g0434371 35.174 489 303 6 16 495 46 529 3.29e-94 312
Msa0315390 MtrunA17_Chr2g0286041 99.237 131 1 0 1 131 1 131 6.61e-87 270
Msa0315390 MtrunA17_Chr4g0063071 31.897 232 151 3 273 500 5 233 1.76e-31 124
Msa0315390 MtrunA17_Chr4g0062571 31.050 219 137 5 82 299 2 207 1.63e-21 94.0
Msa0315390 MtrunA17_Chr4g0062561 31.416 226 132 7 82 299 2 212 1.89e-20 97.1
Msa0315390 MtrunA17_Chr4g0063081 32.979 188 119 4 68 251 8 192 1.06e-18 85.1
Msa0315390 MtrunA17_Chr4g0009161 56.338 71 29 2 430 500 12 80 4.40e-15 75.5
Msa0315390 MtrunA17_Chr3g0138141 57.143 70 22 3 702 770 385 447 1.64e-12 70.5
Msa0315390 MtrunA17_Chr3g0138141 42.529 87 48 1 435 519 12 98 5.56e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315390 AT5G46240.1 71.372 503 143 1 1 503 1 502 0.0 788
Msa0315390 AT5G46240.1 50.538 93 37 2 681 770 588 674 1.40e-17 87.8
Msa0315390 AT4G18290.1 65.149 571 191 3 1 564 1 570 0.0 770
Msa0315390 AT4G18290.2 65.149 571 191 3 1 564 12 581 0.0 769
Msa0315390 AT4G32500.1 44.186 860 352 22 21 771 37 877 0.0 642
Msa0315390 AT2G25600.1 42.526 863 349 17 29 770 48 884 0.0 633
Msa0315390 AT2G26650.1 61.475 488 179 4 16 500 13 494 0.0 620
Msa0315390 AT2G26650.1 29.046 241 131 10 554 768 625 851 5.75e-13 73.2
Msa0315390 AT4G22200.1 41.013 790 392 21 29 775 43 801 0.0 550
Msa0315390 AT2G26650.2 63.291 395 137 3 108 500 1 389 2.19e-172 514
Msa0315390 AT2G26650.2 28.926 242 132 10 554 769 520 747 6.88e-13 72.8
Msa0315390 AT4G22200.2 52.183 481 224 5 29 505 43 521 2.30e-172 509
Msa0315390 AT4G32650.1 42.626 617 326 11 29 630 55 658 1.45e-140 429
Msa0315390 AT4G32650.2 49.372 478 231 6 29 499 55 528 4.94e-140 426
Msa0315390 AT4G32650.3 49.372 478 231 6 29 499 55 528 7.33e-140 427
Msa0315390 AT3G02850.1 30.390 770 473 19 48 770 71 824 5.51e-104 338
Msa0315390 AT3G02850.3 36.383 470 278 8 48 502 71 534 1.05e-98 318
Msa0315390 AT3G02850.2 33.953 592 338 15 48 624 71 624 1.10e-97 320
Msa0315390 AT5G37500.1 29.253 776 491 22 49 777 55 819 2.98e-97 320
Msa0315390 AT5G37500.4 36.481 466 278 8 49 505 55 511 4.03e-92 304
Msa0315390 AT5G37500.2 36.481 466 278 8 49 505 55 511 2.61e-91 305
Msa0315390 AT5G37500.3 35.965 456 274 8 59 505 11 457 8.53e-88 294
Msa0315390 AT2G23980.9 19.676 432 257 11 94 444 158 580 5.20e-14 76.6
Msa0315390 AT2G23980.10 19.676 432 257 11 94 444 158 580 5.20e-14 76.6
Msa0315390 AT2G23980.1 19.676 432 257 11 94 444 158 580 5.20e-14 76.6
Msa0315390 AT2G23980.4 19.676 432 257 11 94 444 158 580 5.20e-14 76.6
Msa0315390 AT2G23980.5 19.676 432 257 11 94 444 158 580 5.20e-14 76.6
Msa0315390 AT2G23980.6 19.676 432 257 11 94 444 131 553 5.38e-14 76.3

Find 154 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTTGTTCTTTAAAATT+TGG 0.068175 2_4:+11690740 None:intergenic
TGAAAGTACTTACAAAATTT+TGG 0.084247 2_4:+11690528 None:intergenic
ACCGTCCTGTTTACTGTTTC+GGG 0.161405 2_4:+11688650 None:intergenic
TTCTTAACATGTTGCGATTA+TGG 0.172049 2_4:-11691148 Msa0315390:CDS
TGTGTCCACCCTATGGTATT+TGG 0.174885 2_4:+11688807 None:intergenic
GACATTTATGTACTGGTTTC+AGG 0.188389 2_4:-11689716 Msa0315390:CDS
TCCTCAGGTATCATGTTATT+AGG 0.219587 2_4:+11688927 None:intergenic
AGCACCTATCCAAGTTCTTT+TGG 0.225780 2_4:+11690769 None:intergenic
TACCGTCCTGTTTACTGTTT+CGG 0.226231 2_4:+11688649 None:intergenic
ATATCTTAATTACCATTAAA+AGG 0.234087 2_4:+11689264 None:intergenic
TGGTGTTTCTTGTTCTATTT+AGG 0.240551 2_4:+11692240 None:intergenic
GTTCTCTCCTTCATGCATTA+AGG 0.253490 2_4:+11689010 None:intergenic
GACTTTGTTCTTTAAAATTT+GGG 0.262231 2_4:+11690741 None:intergenic
TTCTATTTAGGTTGTTCTAA+TGG 0.265035 2_4:+11692252 None:intergenic
GGTGATCATCTCTTTCTTAT+TGG 0.265317 2_4:-11688096 Msa0315390:CDS
TTGCCTGTAAAACATTCATT+AGG 0.266733 2_4:+11689318 None:intergenic
ACATTCGCTTCAATTACTTC+TGG 0.279463 2_4:-11690973 Msa0315390:CDS
AAAACTTCTTCCAGAGGTTC+TGG 0.295107 2_4:-11691809 Msa0315390:CDS
ATTCATGAGGTAGAATTCTA+TGG 0.298267 2_4:+11691913 None:intergenic
CATGTCCACCTGGTTTGTTT+TGG 0.299573 2_4:-11691246 Msa0315390:CDS
ACAATCAAAATTTCTTGAAT+TGG 0.300844 2_4:+11688584 None:intergenic
ATGGATTGTTACCCTCTTCT+TGG 0.304577 2_4:+11688533 None:intergenic
GTGTCCACCCTATGGTATTT+GGG 0.305489 2_4:+11688808 None:intergenic
GGTTGTTCTAATGGTGGTTT+TGG 0.308517 2_4:+11692261 None:intergenic
GTCTGGTTTCCTGGTTTGTT+CGG 0.314225 2_4:+11691712 None:intergenic
TGAAAGTCTGGCTATAAATA+TGG 0.322702 2_4:-11691942 Msa0315390:five_prime_UTR
TGCTGTGCTGCCTGTGCATA+AGG 0.326896 2_4:-11688883 Msa0315390:CDS
CTATATCTGACAGAGATTAA+AGG 0.329489 2_4:-11689153 Msa0315390:intron
TGCTTTCACAATACATTGTA+TGG 0.333962 2_4:+11688742 None:intergenic
TGCAGTATCACATCTTCCTT+TGG 0.337846 2_4:+11689755 None:intergenic
ATCCTTAACTTTGGCAAGAA+TGG 0.340508 2_4:-11688678 Msa0315390:CDS
TCTGGTTTCCTGGTTTGTTC+GGG 0.349964 2_4:+11691713 None:intergenic
AGCAGCTCTTCTAATGAATC+AGG 0.350428 2_4:+11688453 None:intergenic
CACTTACATGCTGTTCAACT+TGG 0.353116 2_4:-11690612 Msa0315390:CDS
TTTCTGACGTATAAGCAAAA+TGG 0.358263 2_4:-11691491 Msa0315390:CDS
GTGGAAGCATTTGGAGAGAT+TGG 0.359303 2_4:-11689419 Msa0315390:CDS
TATAATTTATTACAGGCTTT+GGG 0.364885 2_4:-11691573 Msa0315390:intron
TGCCTGTAAAACATTCATTA+GGG 0.373671 2_4:+11689319 None:intergenic
GCTTCAATTACTTCTGGGTT+AGG 0.376145 2_4:-11690967 Msa0315390:CDS
CCTCAGGTATCATGTTATTA+GGG 0.384210 2_4:+11688928 None:intergenic
GAGGTTCTGGTTGGACGAAA+TGG 0.387098 2_4:-11691796 Msa0315390:CDS
GATATCAAACAACATCTCTA+TGG 0.390889 2_4:+11690634 None:intergenic
GGTTTAACAGCATACATCAT+TGG 0.392948 2_4:-11690590 Msa0315390:CDS
ATGCTTGACCGAATCGCCTT+TGG 0.394681 2_4:+11690012 None:intergenic
GAAGAGCTGCTCAAAATTGC+TGG 0.396916 2_4:-11688441 Msa0315390:intron
AGCCATTCTTGCCAAAGTTA+AGG 0.398518 2_4:+11688676 None:intergenic
CTGGTTGGACGAAATGGAAA+TGG 0.400490 2_4:-11691790 Msa0315390:CDS
ATCACAATCTGTGCATCTCC+TGG 0.408539 2_4:+11689293 None:intergenic
TCTGTGTACACTTTCTCTAA+TGG 0.409182 2_4:+11688609 None:intergenic
CATTCGCTTCAATTACTTCT+GGG 0.411241 2_4:-11690972 Msa0315390:CDS
CACCTATACTGAGGATTGAA+TGG 0.411860 2_4:+11691669 None:intergenic
AATCTCGTTCACTGCATTGA+TGG 0.422427 2_4:-11689581 Msa0315390:CDS
GCAACTGCAGTGGAAGCATT+TGG 0.423214 2_4:-11689428 Msa0315390:CDS
AATGATATAGGTTTCAGAAA+TGG 0.426448 2_4:-11689795 Msa0315390:intron
TTGCCAAAGTTAAGGATTTG+TGG 0.428936 2_4:+11688684 None:intergenic
AGTAGTGAAGAGGAGACTAA+TGG 0.429345 2_4:+11691196 None:intergenic
ACCTATACTGAGGATTGAAT+GGG 0.438329 2_4:+11691670 None:intergenic
GATACATAACTTCAATATAC+TGG 0.441167 2_4:-11690709 Msa0315390:CDS
CTTGTCATTTCTATGTCACT+TGG 0.444523 2_4:+11688561 None:intergenic
TCCTACAGACATTTATGTAC+TGG 0.448321 2_4:-11689723 Msa0315390:CDS
GTCAGAAAGGCAAACTCAAA+GGG 0.457107 2_4:+11691506 None:intergenic
GAGCCACAAATCCTTAACTT+TGG 0.459120 2_4:-11688687 Msa0315390:CDS
TTCTAGTCATATACTCAGCT+TGG 0.460135 2_4:-11691535 Msa0315390:CDS
GCTGTGCTGCCTGTGCATAA+GGG 0.463710 2_4:-11688882 Msa0315390:CDS
GCTATGTTTCAGACTCGAAA+AGG 0.469567 2_4:-11690996 Msa0315390:intron
ATAATAGACAACATTGTCAA+TGG 0.473596 2_4:-11691461 Msa0315390:CDS
ATGATCTTCCAAAGGCGATT+CGG 0.475082 2_4:-11690020 Msa0315390:CDS
GGAAGTCATTGGAGACTCCT+TGG 0.475455 2_4:+11689944 None:intergenic
TTCTCCATCCACTTGGCGAA+TGG 0.477586 2_4:+11688514 None:intergenic
ACTACTTATGACAGTGAGCT+TGG 0.480046 2_4:-11691179 Msa0315390:CDS
CTCAACCCGAAACAGTAAAC+AGG 0.480735 2_4:-11688655 Msa0315390:CDS
AGTGATCTTCTACCATCTCT+TGG 0.481192 2_4:-11691738 Msa0315390:CDS
GTAGTGAAGAGGAGACTAAT+GGG 0.481646 2_4:+11691197 None:intergenic
GAATATCCACACACAGATCA+TGG 0.487220 2_4:-11689110 Msa0315390:CDS
TGTTGGCACACATTTGTTTG+AGG 0.487645 2_4:-11690080 Msa0315390:CDS
ACAGAGAACTGACTCGTCTC+AGG 0.489086 2_4:+11691123 None:intergenic
TTTCGTCCAACCAGAACCTC+TGG 0.495129 2_4:+11691799 None:intergenic
TTCCTTTGGTGGGAAATACT+CGG 0.496198 2_4:+11689769 None:intergenic
AGTATCACATCTTCCTTTGG+TGG 0.498761 2_4:+11689758 None:intergenic
AGGTAGACCTTCTGCACGAC+AGG 0.500630 2_4:+11689970 None:intergenic
CTTCTTCCAGAGGTTCTGGT+TGG 0.501625 2_4:-11691805 Msa0315390:CDS
CCCCATTCAATCCTCAGTAT+AGG 0.503381 2_4:-11691671 Msa0315390:intron
GATCATCTCTTTCTTATTGG+CGG 0.505634 2_4:-11688093 Msa0315390:CDS
ACCCTGATTCCAAAAGAACT+TGG 0.507181 2_4:-11690778 Msa0315390:CDS
TGACTAACCTTGTAGTTCAC+TGG 0.508132 2_4:-11690562 Msa0315390:CDS
CTCCTTCATGCATTAAGGAA+TGG 0.509079 2_4:+11689015 None:intergenic
TATTTAGGTTGTTCTAATGG+TGG 0.509646 2_4:+11692255 None:intergenic
GAGGTAGAATTCTATGGACT+TGG 0.511960 2_4:+11691919 None:intergenic
CAATCCATTCGCCAAGTGGA+TGG 0.515545 2_4:-11688518 Msa0315390:CDS
ATCTCGTTCACTGCATTGAT+GGG 0.518997 2_4:-11689580 Msa0315390:CDS
TTGGTTCTATATAAATTGCT+AGG 0.520308 2_4:-11689086 Msa0315390:CDS
TTGTTTGCAGTGCACTGTGC+AGG 0.521813 2_4:-11690830 Msa0315390:CDS
TTTGTTCGGGCGCCAAGAGA+TGG 0.523096 2_4:+11691726 None:intergenic
CGTCAGAAAGGCAAACTCAA+AGG 0.525022 2_4:+11691505 None:intergenic
CTGTGCTGCCTGTGCATAAG+GGG 0.526246 2_4:-11688881 Msa0315390:CDS
CACTGTCATAAGTAGTGAAG+AGG 0.536117 2_4:+11691186 None:intergenic
CAGTTGGAAAAGGAAGTCAT+TGG 0.537816 2_4:+11689933 None:intergenic
ACTTACATGCTGTTCAACTT+GGG 0.543072 2_4:-11690611 Msa0315390:CDS
TCTGTAGTTCGAACTGTGAA+AGG 0.543170 2_4:+11689374 None:intergenic
TCTAGTTTCCCCTTATGCAC+AGG 0.544175 2_4:+11688873 None:intergenic
GAGTCAGTTCTCTGTTTGCA+AGG 0.546900 2_4:-11691115 Msa0315390:intron
GGGGTATTACCAGTTGGAAA+AGG 0.546901 2_4:+11689923 None:intergenic
TGGTTGGACGAAATGGAAAT+GGG 0.547226 2_4:-11691789 Msa0315390:CDS
GACATTGATGTCATTAGAGA+TGG 0.549773 2_4:-11688117 Msa0315390:CDS
TGCACAGTGCACTGCAAACA+AGG 0.552915 2_4:+11690832 None:intergenic
GCACAGAACCCAAATACCAT+AGG 0.553388 2_4:-11688816 Msa0315390:CDS
GAACGTAAGCACGATGTCGA+TGG 0.554490 2_4:+11691430 None:intergenic
CATGTAGTTACATGTCCACC+TGG 0.555978 2_4:-11691256 Msa0315390:intron
AATCCTCAAAGCTTCAAAAG+AGG 0.556400 2_4:+11691870 None:intergenic
ACGCTTACTACCACAGGCTA+TGG 0.556777 2_4:-11690677 Msa0315390:CDS
TCTTGGCGCCCGAACAAACC+AGG 0.556962 2_4:-11691721 Msa0315390:CDS
GTATCACATCTTCCTTTGGT+GGG 0.558039 2_4:+11689759 None:intergenic
TGTTTGAGGTTTAAAACAGA+AGG 0.561867 2_4:-11690066 Msa0315390:CDS
GGGTACAAAGAAGCTGCAAA+TGG 0.566698 2_4:+11692220 None:intergenic
CATTGGAGACTCCTTGGAAG+AGG 0.567411 2_4:+11689950 None:intergenic
GGCCATTCCTTAATGCATGA+AGG 0.576044 2_4:-11689017 Msa0315390:CDS
AGGAGACTAATGGGCTCAAG+TGG 0.586925 2_4:+11691206 None:intergenic
GAGTCTACAAATAATTTACA+TGG 0.590590 2_4:-11689038 Msa0315390:CDS
CAGAAGGTCTACCTCTTCCA+AGG 0.591913 2_4:-11689961 Msa0315390:CDS
GACAAGGTTCACCAAGAAGA+GGG 0.592159 2_4:-11688544 Msa0315390:CDS
GCACAGGCAGCACAGCAGCA+TGG 0.592390 2_4:+11688889 None:intergenic
CACAGAACCCAAATACCATA+GGG 0.592525 2_4:-11688815 Msa0315390:CDS
TCCACACACAGATCATGGAT+TGG 0.597717 2_4:-11689105 Msa0315390:CDS
ATTGTCACGCTTACTACCAC+AGG 0.598797 2_4:-11690683 Msa0315390:CDS
GATTCCAAAAGAACTTGGAT+AGG 0.601551 2_4:-11690773 Msa0315390:CDS
GGATGGAGAAGTAGCTCACA+TGG 0.605702 2_4:-11688501 Msa0315390:CDS
AGCATTAAATGATCTTCCAA+AGG 0.608942 2_4:-11690028 Msa0315390:CDS
GAGCTACTTCTCCATCCACT+TGG 0.609891 2_4:+11688507 None:intergenic
AGCCGAGTATTTCCCACCAA+AGG 0.611493 2_4:-11689771 Msa0315390:CDS
TCGCGTACACAATCAAATGT+TGG 0.618917 2_4:-11690097 Msa0315390:CDS
CAGAGATTAAAGGAGCGTGA+AGG 0.621845 2_4:-11689143 Msa0315390:CDS
ATTTGATTGTGTACGCGACG+TGG 0.622706 2_4:+11690102 None:intergenic
TGTACTGGTTTCAGGCGCAG+TGG 0.622748 2_4:-11689708 Msa0315390:intron
TGACAAGGTTCACCAAGAAG+AGG 0.622804 2_4:-11688545 Msa0315390:CDS
GTTCGAACTGTGAAAGGCTG+TGG 0.623207 2_4:+11689380 None:intergenic
GACTGGTCCAGTGAACTACA+AGG 0.630276 2_4:+11690555 None:intergenic
AGTAGCTCACATGGACAGCA+CGG 0.633141 2_4:-11688492 Msa0315390:CDS
AATAACATGATACCTGAGGA+TGG 0.636817 2_4:-11688924 Msa0315390:CDS
CAAGTGACATAGAAATGACA+AGG 0.642646 2_4:-11688560 Msa0315390:CDS
ATCCAAAGAAAATTGCAACC+AGG 0.642767 2_4:-11691364 Msa0315390:intron
ACCAGTACATAAATGTCTGT+AGG 0.647308 2_4:+11689722 None:intergenic
GCTCTTCTAATGAATCAGGT+AGG 0.648781 2_4:+11688457 None:intergenic
GTAACAATCCATTCGCCAAG+TGG 0.651845 2_4:-11688522 Msa0315390:CDS
CCCTAATAACATGATACCTG+AGG 0.670461 2_4:-11688928 Msa0315390:CDS
ACCAATCCATGATCTGTGTG+TGG 0.672562 2_4:+11689104 None:intergenic
ATGTAAATCTCCATAGCCTG+TGG 0.678772 2_4:+11690667 None:intergenic
GCAGATATCCAAAACAAACC+AGG 0.680140 2_4:+11691238 None:intergenic
AGAACCCAAATACCATAGGG+TGG 0.680575 2_4:-11688812 Msa0315390:CDS
TCAGAAAGGCAAACTCAAAG+GGG 0.689808 2_4:+11691507 None:intergenic
CCTATACTGAGGATTGAATG+GGG 0.693402 2_4:+11691671 None:intergenic
ACCCGAAACAGTAAACAGGA+CGG 0.696148 2_4:-11688651 Msa0315390:CDS
AAAGGTCATCACCTATACTG+AGG 0.699640 2_4:+11691660 None:intergenic
GAAGAGAAGAATGACTATCG+TGG 0.704476 2_4:+11691396 None:intergenic
GATATCCAAAACAAACCAGG+TGG 0.711945 2_4:+11691241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCATAAAAATAAAAAAG+GGG + chr2_4:11692009-11692028 None:intergenic 10.0%
!! AAATTAAGTTTATAAATGAG+TGG + chr2_4:11688288-11688307 None:intergenic 15.0%
!! TTTCATGTATAATTTATTAC+AGG - chr2_4:11688748-11688767 Msa0315390:CDS 15.0%
!! TATAAAATTATTATAGCATG+TGG + chr2_4:11689868-11689887 None:intergenic 15.0%
!!! ATTTTATATTATACATGTGT+TGG - chr2_4:11689880-11689899 Msa0315390:intron 15.0%
!! AATAAAATAAAAAGACATGT+GGG + chr2_4:11690428-11690447 None:intergenic 15.0%
!! AAATAAAATAAAAAGACATG+TGG + chr2_4:11690429-11690448 None:intergenic 15.0%
!! ATATCTTAATTACCATTAAA+AGG + chr2_4:11691067-11691086 None:intergenic 15.0%
!! TTATATTTATCAATCATAGT+AGG - chr2_4:11691128-11691147 Msa0315390:CDS 15.0%
!! AATCATAAAAATAAAAAAGG+GGG + chr2_4:11692008-11692027 None:intergenic 15.0%
!!! TATTTTTATGATTTTTTCTG+AGG - chr2_4:11692015-11692034 Msa0315390:intron 15.0%
!!! ATTTTTATGATTTTTTCTGA+GGG - chr2_4:11692016-11692035 Msa0315390:intron 15.0%
!!! CTCTTTATTAATTATTTTTG+TGG + chr2_4:11692176-11692195 None:intergenic 15.0%
!! TATAATTTATTACAGGCTTT+GGG - chr2_4:11688755-11688774 Msa0315390:CDS 20.0%
!! TTATATCTATATATATCACC+TGG + chr2_4:11688985-11689004 None:intergenic 20.0%
!! AGAAATTTGAAAAGTAAGTA+GGG + chr2_4:11689046-11689065 None:intergenic 20.0%
!! TAGAAATTTGAAAAGTAAGT+AGG + chr2_4:11689047-11689066 None:intergenic 20.0%
!!! GACTTTGTTCTTTAAAATTT+GGG + chr2_4:11689590-11689609 None:intergenic 20.0%
!!! AGACTTTGTTCTTTAAAATT+TGG + chr2_4:11689591-11689610 None:intergenic 20.0%
!!! ATTTTAAAGAACAAAGTCTT+TGG - chr2_4:11689592-11689611 Msa0315390:intron 20.0%
!!! TTTTAAAGAACAAAGTCTTT+GGG - chr2_4:11689593-11689612 Msa0315390:intron 20.0%
!!! GAAAGTACTTACAAAATTTT+GGG + chr2_4:11689802-11689821 None:intergenic 20.0%
!!! TGAAAGTACTTACAAAATTT+TGG + chr2_4:11689803-11689822 None:intergenic 20.0%
!! ATAAAATAAAAAGACATGTG+GGG + chr2_4:11690427-11690446 None:intergenic 20.0%
!!! CATTCTTTAAGATTCATTTA+TGG + chr2_4:11690677-11690696 None:intergenic 20.0%
!! ACAATCAAAATTTCTTGAAT+TGG + chr2_4:11691747-11691766 None:intergenic 20.0%
!! ATCATAAAAATAAAAAAGGG+GGG + chr2_4:11692007-11692026 None:intergenic 20.0%
!!! TTCTATTTAGGTTGTTCTAA+TGG + chr2_4:11688079-11688098 None:intergenic 25.0%
!!! ATTTTTGGATTTCAAAGAGA+GGG + chr2_4:11688131-11688150 None:intergenic 25.0%
!! GATTTTCTTACATATGCATT+TGG + chr2_4:11688158-11688177 None:intergenic 25.0%
!!! TCTTTTATTTCAGCTTTACA+AGG - chr2_4:11688342-11688361 Msa0315390:intron 25.0%
!!! GTTAAGTTTTTCAATTCATG+AGG + chr2_4:11688431-11688450 None:intergenic 25.0%
!! TATTATGTATTTTCGTAGTC+TGG + chr2_4:11688636-11688655 None:intergenic 25.0%
! CTATATTGTGACTATGTAAA+AGG + chr2_4:11688689-11688708 None:intergenic 25.0%
! GTATAATTTATTACAGGCTT+TGG - chr2_4:11688754-11688773 Msa0315390:CDS 25.0%
! ATAATAGACAACATTGTCAA+TGG - chr2_4:11688867-11688886 Msa0315390:CDS 25.0%
!!! GACATTCATTTTAGTTTCTA+AGG + chr2_4:11689017-11689036 None:intergenic 25.0%
! TGAAATTAAATTTGACATGC+TGG + chr2_4:11689243-11689262 None:intergenic 25.0%
!! GCATGTCAAATTTAATTTCA+TGG - chr2_4:11689243-11689262 Msa0315390:intron 25.0%
!! CAAATTTAATTTCATGGTTC+TGG - chr2_4:11689249-11689268 Msa0315390:intron 25.0%
! TTGAAATTGTATAGGAAGTA+GGG + chr2_4:11689430-11689449 None:intergenic 25.0%
! TTCCTCTTTCAAAAAATTTC+AGG - chr2_4:11689470-11689489 Msa0315390:intron 25.0%
!!! TACCTGAAATTTTTTGAAAG+AGG + chr2_4:11689475-11689494 None:intergenic 25.0%
! GATACATAACTTCAATATAC+TGG - chr2_4:11689619-11689638 Msa0315390:intron 25.0%
!!! TAACTTTTTGAACATTGGTT+TGG + chr2_4:11689951-11689970 None:intergenic 25.0%
!! GTAACTAACTTTTTGAACAT+TGG + chr2_4:11689956-11689975 None:intergenic 25.0%
! TAGCTGACAAAAATAACTTA+TGG + chr2_4:11690069-11690088 None:intergenic 25.0%
!! TAATAAGAGAGGATTCATTT+TGG - chr2_4:11690149-11690168 Msa0315390:CDS 25.0%
! TATATCATTAGAGTTACTTG+GGG + chr2_4:11690522-11690541 None:intergenic 25.0%
! CTATATCATTAGAGTTACTT+GGG + chr2_4:11690523-11690542 None:intergenic 25.0%
! AATGATATAGGTTTCAGAAA+TGG - chr2_4:11690533-11690552 Msa0315390:intron 25.0%
! TGAATTGTTAATGTAAGGAT+AGG + chr2_4:11690864-11690883 None:intergenic 25.0%
! TATCCTTACATTAACAATTC+AGG - chr2_4:11690863-11690882 Msa0315390:intron 25.0%
!! TGTGATGAATAACCTTTTAA+TGG - chr2_4:11691052-11691071 Msa0315390:intron 25.0%
!!! TTGGTTCTATATAAATTGCT+AGG - chr2_4:11691242-11691261 Msa0315390:CDS 25.0%
! GAGTCTACAAATAATTTACA+TGG - chr2_4:11691290-11691309 Msa0315390:intron 25.0%
! TCATAAAAATAAAAAAGGGG+GGG + chr2_4:11692006-11692025 None:intergenic 25.0%
!!! CAGATTATTGCATTTGATTT+TGG + chr2_4:11692060-11692079 None:intergenic 25.0%
!! TATTTAGGTTGTTCTAATGG+TGG + chr2_4:11688076-11688095 None:intergenic 30.0%
TGGTGTTTCTTGTTCTATTT+AGG + chr2_4:11688091-11688110 None:intergenic 30.0%
!! CATTTTTGGATTTCAAAGAG+AGG + chr2_4:11688132-11688151 None:intergenic 30.0%
! TATGCATTTGGAGACATTTT+TGG + chr2_4:11688146-11688165 None:intergenic 30.0%
AGAAATAGAAGGAAAGATGA+TGG + chr2_4:11688212-11688231 None:intergenic 30.0%
AAAGCTTGTGAAGAAATAGA+AGG + chr2_4:11688223-11688242 None:intergenic 30.0%
! CTTTATTTGTTGAGACAAAG+TGG - chr2_4:11688239-11688258 Msa0315390:intron 30.0%
ATAAATGAGTGGTAAAAACG+TGG + chr2_4:11688277-11688296 None:intergenic 30.0%
TGAAAGTCTGGCTATAAATA+TGG - chr2_4:11688386-11688405 Msa0315390:intron 30.0%
ATTCATGAGGTAGAATTCTA+TGG + chr2_4:11688418-11688437 None:intergenic 30.0%
! ATTTTGCTTATACGTCAGAA+AGG + chr2_4:11688838-11688857 None:intergenic 30.0%
TTTCTGACGTATAAGCAAAA+TGG - chr2_4:11688837-11688856 Msa0315390:CDS 30.0%
TTCTTAACATGTTGCGATTA+TGG - chr2_4:11689180-11689199 Msa0315390:intron 30.0%
TGAAATTGTATAGGAAGTAG+GGG + chr2_4:11689429-11689448 None:intergenic 30.0%
CTTGAAATTGTATAGGAAGT+AGG + chr2_4:11689431-11689450 None:intergenic 30.0%
CTACTTCCTATACAATTTCA+AGG - chr2_4:11689429-11689448 Msa0315390:CDS 30.0%
GATATGCCTTGAAATTGTAT+AGG + chr2_4:11689438-11689457 None:intergenic 30.0%
GATATCAAACAACATCTCTA+TGG + chr2_4:11689697-11689716 None:intergenic 30.0%
AAATTATTATAGCATGTGGC+TGG + chr2_4:11689864-11689883 None:intergenic 30.0%
!! GTTTGGATAATAGCTTTGAA+GGG + chr2_4:11689934-11689953 None:intergenic 30.0%
GTTAGTTACAAATACAGTGT+AGG - chr2_4:11689967-11689986 Msa0315390:CDS 30.0%
AGATATACTTGACAATTGTG+GGG + chr2_4:11689999-11690018 None:intergenic 30.0%
CAGATATACTTGACAATTGT+GGG + chr2_4:11690000-11690019 None:intergenic 30.0%
TCAGATATACTTGACAATTG+TGG + chr2_4:11690001-11690020 None:intergenic 30.0%
TGAATCCTCTCTTATTAAGA+GGG + chr2_4:11690146-11690165 None:intergenic 30.0%
ATGAATCCTCTCTTATTAAG+AGG + chr2_4:11690147-11690166 None:intergenic 30.0%
! TGTTTGAGGTTTAAAACAGA+AGG - chr2_4:11690262-11690281 Msa0315390:intron 30.0%
AGCATTAAATGATCTTCCAA+AGG - chr2_4:11690300-11690319 Msa0315390:intron 30.0%
CCTATATCATTAGAGTTACT+TGG + chr2_4:11690524-11690543 None:intergenic 30.0%
CCAAGTAACTCTAATGATAT+AGG - chr2_4:11690521-11690540 Msa0315390:intron 30.0%
! ATCCCTAATGAATGTTTTAC+AGG - chr2_4:11691007-11691026 Msa0315390:intron 30.0%
TGCCTGTAAAACATTCATTA+GGG + chr2_4:11691012-11691031 None:intergenic 30.0%
TTGCCTGTAAAACATTCATT+AGG + chr2_4:11691013-11691032 None:intergenic 30.0%
AAAGCTTCTAAACTCAACAT+GGG - chr2_4:11691089-11691108 Msa0315390:intron 30.0%
GATATAGATCACACATGATT+AGG + chr2_4:11691162-11691181 None:intergenic 30.0%
CTATATCTGACAGAGATTAA+AGG - chr2_4:11691175-11691194 Msa0315390:CDS 30.0%
TGCTTTCACAATACATTGTA+TGG + chr2_4:11691589-11691608 None:intergenic 30.0%
ACTAATGTTCCTCAGTTATA+GGG + chr2_4:11691924-11691943 None:intergenic 30.0%
AACTAATGTTCCTCAGTTAT+AGG + chr2_4:11691925-11691944 None:intergenic 30.0%
!!! TTATGATTTTTTCTGAGGGA+AGG - chr2_4:11692020-11692039 Msa0315390:intron 30.0%
!!! TATGATTTTTTCTGAGGGAA+GGG - chr2_4:11692021-11692040 Msa0315390:intron 30.0%
AAAACTGCAGGTGAAAAATT+TGG - chr2_4:11692139-11692158 Msa0315390:intron 30.0%
!! TAGAAGGAAAGATGATGGAA+TGG + chr2_4:11688207-11688226 None:intergenic 35.0%
! TATTTGTTGAGACAAAGTGG+AGG - chr2_4:11688242-11688261 Msa0315390:intron 35.0%
AAGGACAAGACATGAAAAAG+TGG - chr2_4:11688361-11688380 Msa0315390:intron 35.0%
GAAAAAGTGGTTTGAAAGTC+TGG - chr2_4:11688374-11688393 Msa0315390:intron 35.0%
!!! ATACCTCTTTTGAAGCTTTG+AGG - chr2_4:11688455-11688474 Msa0315390:CDS 35.0%
AATCCTCAAAGCTTCAAAAG+AGG + chr2_4:11688461-11688480 None:intergenic 35.0%
!!! CTGGAAGAAGTTTTTAAGAC+TGG + chr2_4:11688513-11688532 None:intergenic 35.0%
GTCTTAAAAACTTCTTCCAG+AGG - chr2_4:11688513-11688532 Msa0315390:CDS 35.0%
ACCTATACTGAGGATTGAAT+GGG + chr2_4:11688661-11688680 None:intergenic 35.0%
TTCTAGTCATATACTCAGCT+TGG - chr2_4:11688793-11688812 Msa0315390:CDS 35.0%
ATCCAAAGAAAATTGCAACC+AGG - chr2_4:11688964-11688983 Msa0315390:CDS 35.0%
ACATTCGCTTCAATTACTTC+TGG - chr2_4:11689355-11689374 Msa0315390:CDS 35.0%
CATTCGCTTCAATTACTTCT+GGG - chr2_4:11689356-11689375 Msa0315390:CDS 35.0%
GAAAGAGGAAATTCAGTTCT+TGG + chr2_4:11689460-11689479 None:intergenic 35.0%
!!! TCCAAGTTCTTTTGGAATCA+GGG + chr2_4:11689554-11689573 None:intergenic 35.0%
!!! ATCCAAGTTCTTTTGGAATC+AGG + chr2_4:11689555-11689574 None:intergenic 35.0%
GATTCCAAAAGAACTTGGAT+AGG - chr2_4:11689555-11689574 Msa0315390:intron 35.0%
ACTTACATGCTGTTCAACTT+GGG - chr2_4:11689717-11689736 Msa0315390:CDS 35.0%
GGTTTAACAGCATACATCAT+TGG - chr2_4:11689738-11689757 Msa0315390:CDS 35.0%
!! GGTTTGGATAATAGCTTTGA+AGG + chr2_4:11689935-11689954 None:intergenic 35.0%
TACAAATACAGTGTAGGACT+AGG - chr2_4:11689973-11689992 Msa0315390:CDS 35.0%
AACTTAACATGAAACTCGAG+AGG + chr2_4:11690044-11690063 None:intergenic 35.0%
CAAAAACTCGTTCAGATAAG+AGG - chr2_4:11690107-11690126 Msa0315390:CDS 35.0%
TTCTTCCCTCTTAATAAGAG+AGG - chr2_4:11690138-11690157 Msa0315390:CDS 35.0%
!!! TTCACTTTTTGTCTCTTCTC+CGG - chr2_4:11690450-11690469 Msa0315390:intron 35.0%
!!! CTTCTTGCTTTTAACTTAGC+CGG + chr2_4:11690472-11690491 None:intergenic 35.0%
TCCTACAGACATTTATGTAC+TGG - chr2_4:11690605-11690624 Msa0315390:CDS 35.0%
ACCAGTACATAAATGTCTGT+AGG + chr2_4:11690609-11690628 None:intergenic 35.0%
!! GACATTTATGTACTGGTTTC+AGG - chr2_4:11690612-11690631 Msa0315390:CDS 35.0%
CCACCTGAATTGTTAATGTA+AGG + chr2_4:11690869-11690888 None:intergenic 35.0%
CCTTACATTAACAATTCAGG+TGG - chr2_4:11690866-11690885 Msa0315390:intron 35.0%
! AATGTTTTACAGGCAAATCC+AGG - chr2_4:11691017-11691036 Msa0315390:intron 35.0%
CAAAGCTTCTAAACTCAACA+TGG - chr2_4:11691088-11691107 Msa0315390:intron 35.0%
AAGCTTCTAAACTCAACATG+GGG - chr2_4:11691090-11691109 Msa0315390:intron 35.0%
GATCACACATGATTAGGATT+AGG + chr2_4:11691156-11691175 None:intergenic 35.0%
CCTCAGGTATCATGTTATTA+GGG + chr2_4:11691403-11691422 None:intergenic 35.0%
TCCTCAGGTATCATGTTATT+AGG + chr2_4:11691404-11691423 None:intergenic 35.0%
AATAACATGATACCTGAGGA+TGG - chr2_4:11691404-11691423 Msa0315390:CDS 35.0%
TTGCCAAAGTTAAGGATTTG+TGG + chr2_4:11691647-11691666 None:intergenic 35.0%
ATCCTTAACTTTGGCAAGAA+TGG - chr2_4:11691650-11691669 Msa0315390:intron 35.0%
TCTGTGTACACTTTCTCTAA+TGG + chr2_4:11691722-11691741 None:intergenic 35.0%
! CTTGTCATTTCTATGTCACT+TGG + chr2_4:11691770-11691789 None:intergenic 35.0%
CAAGTGACATAGAAATGACA+AGG - chr2_4:11691768-11691787 Msa0315390:CDS 35.0%
AAAAATAAAAAAGGGGGGGT+GGG + chr2_4:11692002-11692021 None:intergenic 35.0%
TAAAAATAAAAAAGGGGGGG+TGG + chr2_4:11692003-11692022 None:intergenic 35.0%
!! CTATTAACTTGCAAAACTGC+AGG - chr2_4:11692127-11692146 Msa0315390:intron 35.0%
GACATTGATGTCATTAGAGA+TGG - chr2_4:11692211-11692230 Msa0315390:five_prime_UTR 35.0%
GGTGATCATCTCTTTCTTAT+TGG - chr2_4:11692232-11692251 Msa0315390:five_prime_UTR 35.0%
GATCATCTCTTTCTTATTGG+CGG - chr2_4:11692235-11692254 Msa0315390:five_prime_UTR 35.0%
ATGAGTGGTAAAAACGTGGA+GGG + chr2_4:11688273-11688292 None:intergenic 40.0%
AATGAGTGGTAAAAACGTGG+AGG + chr2_4:11688274-11688293 None:intergenic 40.0%
GAGGTAGAATTCTATGGACT+TGG + chr2_4:11688412-11688431 None:intergenic 40.0%
AAAACTTCTTCCAGAGGTTC+TGG - chr2_4:11688519-11688538 Msa0315390:CDS 40.0%
TGGTTGGACGAAATGGAAAT+GGG - chr2_4:11688539-11688558 Msa0315390:CDS 40.0%
AGTGATCTTCTACCATCTCT+TGG - chr2_4:11688590-11688609 Msa0315390:CDS 40.0%
!! ATTTTCGTAGTCTGGTTTCC+TGG + chr2_4:11688628-11688647 None:intergenic 40.0%
CCTATACTGAGGATTGAATG+GGG + chr2_4:11688660-11688679 None:intergenic 40.0%
CACCTATACTGAGGATTGAA+TGG + chr2_4:11688662-11688681 None:intergenic 40.0%
AAAGGTCATCACCTATACTG+AGG + chr2_4:11688671-11688690 None:intergenic 40.0%
TCAGAAAGGCAAACTCAAAG+GGG + chr2_4:11688824-11688843 None:intergenic 40.0%
GTCAGAAAGGCAAACTCAAA+GGG + chr2_4:11688825-11688844 None:intergenic 40.0%
GAAGAGAAGAATGACTATCG+TGG + chr2_4:11688935-11688954 None:intergenic 40.0%
! CACCTGGTTGCAATTTTCTT+TGG + chr2_4:11688969-11688988 None:intergenic 40.0%
GATATCCAAAACAAACCAGG+TGG + chr2_4:11689090-11689109 None:intergenic 40.0%
GCAGATATCCAAAACAAACC+AGG + chr2_4:11689093-11689112 None:intergenic 40.0%
GTAGTGAAGAGGAGACTAAT+GGG + chr2_4:11689134-11689153 None:intergenic 40.0%
AGTAGTGAAGAGGAGACTAA+TGG + chr2_4:11689135-11689154 None:intergenic 40.0%
CACTGTCATAAGTAGTGAAG+AGG + chr2_4:11689145-11689164 None:intergenic 40.0%
ACTACTTATGACAGTGAGCT+TGG - chr2_4:11689149-11689168 Msa0315390:intron 40.0%
! ACATAGCAAAGGTGCAAGTA+AGG + chr2_4:11689319-11689338 None:intergenic 40.0%
! TCGAGTCTGAAACATAGCAA+AGG + chr2_4:11689330-11689349 None:intergenic 40.0%
GCTATGTTTCAGACTCGAAA+AGG - chr2_4:11689332-11689351 Msa0315390:CDS 40.0%
GCTTCAATTACTTCTGGGTT+AGG - chr2_4:11689361-11689380 Msa0315390:CDS 40.0%
GGGGAGTTTATGAGGTTTAA+TGG + chr2_4:11689410-11689429 None:intergenic 40.0%
ACCCTGATTCCAAAAGAACT+TGG - chr2_4:11689550-11689569 Msa0315390:intron 40.0%
! AGCACCTATCCAAGTTCTTT+TGG + chr2_4:11689562-11689581 None:intergenic 40.0%
ATGTAAATCTCCATAGCCTG+TGG + chr2_4:11689664-11689683 None:intergenic 40.0%
CACTTACATGCTGTTCAACT+TGG - chr2_4:11689716-11689735 Msa0315390:CDS 40.0%
TGACTAACCTTGTAGTTCAC+TGG - chr2_4:11689766-11689785 Msa0315390:CDS 40.0%
!! TACAAAATTTTGGGTGCGAC+TGG + chr2_4:11689793-11689812 None:intergenic 40.0%
AAACTCGAGAGGATTGTACT+AGG + chr2_4:11690033-11690052 None:intergenic 40.0%
!! AGGATTCATTTTGGTCACAG+AGG - chr2_4:11690158-11690177 Msa0315390:intron 40.0%
!! GGATTCATTTTGGTCACAGA+GGG - chr2_4:11690159-11690178 Msa0315390:intron 40.0%
TCGCGTACACAATCAAATGT+TGG - chr2_4:11690231-11690250 Msa0315390:intron 40.0%
TGTTGGCACACATTTGTTTG+AGG - chr2_4:11690248-11690267 Msa0315390:intron 40.0%
ATGATCTTCCAAAGGCGATT+CGG - chr2_4:11690308-11690327 Msa0315390:intron 40.0%
CAGTTGGAAAAGGAAGTCAT+TGG + chr2_4:11690398-11690417 None:intergenic 40.0%
! CAATGACTTCCTTTTCCAAC+TGG - chr2_4:11690396-11690415 Msa0315390:intron 40.0%
GGGTCAGATGTTGAAACTTT+AGG + chr2_4:11690502-11690521 None:intergenic 40.0%
TTCCTTTGGTGGGAAATACT+CGG + chr2_4:11690562-11690581 None:intergenic 40.0%
GTATCACATCTTCCTTTGGT+GGG + chr2_4:11690572-11690591 None:intergenic 40.0%
AGTATCACATCTTCCTTTGG+TGG + chr2_4:11690573-11690592 None:intergenic 40.0%
TGCAGTATCACATCTTCCTT+TGG + chr2_4:11690576-11690595 None:intergenic 40.0%
AATCTCGTTCACTGCATTGA+TGG - chr2_4:11690747-11690766 Msa0315390:CDS 40.0%
! ATCTCGTTCACTGCATTGAT+GGG - chr2_4:11690748-11690767 Msa0315390:CDS 40.0%
! TTTTGACAAAGCAACTGCAG+TGG - chr2_4:11690890-11690909 Msa0315390:intron 40.0%
TCTGTAGTTCGAACTGTGAA+AGG + chr2_4:11690957-11690976 None:intergenic 40.0%
GAATATCCACACACAGATCA+TGG - chr2_4:11691218-11691237 Msa0315390:CDS 40.0%
CTCCTTCATGCATTAAGGAA+TGG + chr2_4:11691316-11691335 None:intergenic 40.0%
GTTCTCTCCTTCATGCATTA+AGG + chr2_4:11691321-11691340 None:intergenic 40.0%
CCCTAATAACATGATACCTG+AGG - chr2_4:11691400-11691419 Msa0315390:CDS 40.0%
CACAGAACCCAAATACCATA+GGG - chr2_4:11691513-11691532 Msa0315390:CDS 40.0%
GAGCCACAAATCCTTAACTT+TGG - chr2_4:11691641-11691660 Msa0315390:intron 40.0%
AGCCATTCTTGCCAAAGTTA+AGG + chr2_4:11691655-11691674 None:intergenic 40.0%
TACCGTCCTGTTTACTGTTT+CGG + chr2_4:11691682-11691701 None:intergenic 40.0%
! ATGGATTGTTACCCTCTTCT+TGG + chr2_4:11691798-11691817 None:intergenic 40.0%
GCTCTTCTAATGAATCAGGT+AGG + chr2_4:11691874-11691893 None:intergenic 40.0%
AGCAGCTCTTCTAATGAATC+AGG + chr2_4:11691878-11691897 None:intergenic 40.0%
! AGCATTGAACCCTATAACTG+AGG - chr2_4:11691912-11691931 Msa0315390:five_prime_UTR 40.0%
AAAATAAAAAAGGGGGGGTG+GGG + chr2_4:11692001-11692020 None:intergenic 40.0%
ACTGCAGGTGAAAAATTTGG+CGG - chr2_4:11692142-11692161 Msa0315390:intron 40.0%
GGGTACAAAGAAGCTGCAAA+TGG + chr2_4:11688111-11688130 None:intergenic 45.0%
GAATGGTAGAGTCTTGCTAG+TGG + chr2_4:11688190-11688209 None:intergenic 45.0%
CTGGTTGGACGAAATGGAAA+TGG - chr2_4:11688538-11688557 Msa0315390:CDS 45.0%
!! TCTGGTTTCCTGGTTTGTTC+GGG + chr2_4:11688618-11688637 None:intergenic 45.0%
!! GTCTGGTTTCCTGGTTTGTT+CGG + chr2_4:11688619-11688638 None:intergenic 45.0%
CCCCATTCAATCCTCAGTAT+AGG - chr2_4:11688657-11688676 Msa0315390:CDS 45.0%
CGTCAGAAAGGCAAACTCAA+AGG + chr2_4:11688826-11688845 None:intergenic 45.0%
CATGTAGTTACATGTCCACC+TGG - chr2_4:11689072-11689091 Msa0315390:CDS 45.0%
!!! CATGTCCACCTGGTTTGTTT+TGG - chr2_4:11689082-11689101 Msa0315390:CDS 45.0%
GAGTCAGTTCTCTGTTTGCA+AGG - chr2_4:11689213-11689232 Msa0315390:intron 45.0%
! GCAAGTAAGGAAGAAAGCAC+TGG + chr2_4:11689306-11689325 None:intergenic 45.0%
AGGAAGTAGGGGAGTTTATG+AGG + chr2_4:11689418-11689437 None:intergenic 45.0%
ATTGTCACGCTTACTACCAC+AGG - chr2_4:11689645-11689664 Msa0315390:intron 45.0%
ATTTGATTGTGTACGCGACG+TGG + chr2_4:11690229-11690248 None:intergenic 45.0%
GCACGACAGGAAAAAAGAGA+TGG + chr2_4:11690348-11690367 None:intergenic 45.0%
!!! CTTTTTTCCTGTCGTGCAGA+AGG - chr2_4:11690351-11690370 Msa0315390:intron 45.0%
! GGGGTATTACCAGTTGGAAA+AGG + chr2_4:11690408-11690427 None:intergenic 45.0%
! ACATGTGGGGTATTACCAGT+TGG + chr2_4:11690414-11690433 None:intergenic 45.0%
!! GTGGAAGCATTTGGAGAGAT+TGG - chr2_4:11690909-11690928 Msa0315390:intron 45.0%
ATCACAATCTGTGCATCTCC+TGG + chr2_4:11691038-11691057 None:intergenic 45.0%
! CAGAGATTAAAGGAGCGTGA+AGG - chr2_4:11691185-11691204 Msa0315390:CDS 45.0%
TCCACACACAGATCATGGAT+TGG - chr2_4:11691223-11691242 Msa0315390:CDS 45.0%
ACCAATCCATGATCTGTGTG+TGG + chr2_4:11691227-11691246 None:intergenic 45.0%
GGCCATTCCTTAATGCATGA+AGG - chr2_4:11691311-11691330 Msa0315390:intron 45.0%
! AGATCTCTTTTGCCATCCTC+AGG + chr2_4:11691419-11691438 None:intergenic 45.0%
! TCTAGTTTCCCCTTATGCAC+AGG + chr2_4:11691458-11691477 None:intergenic 45.0%
GCACAGAACCCAAATACCAT+AGG - chr2_4:11691512-11691531 Msa0315390:CDS 45.0%
AGAACCCAAATACCATAGGG+TGG - chr2_4:11691516-11691535 Msa0315390:CDS 45.0%
GTGTCCACCCTATGGTATTT+GGG + chr2_4:11691523-11691542 None:intergenic 45.0%
TGTGTCCACCCTATGGTATT+TGG + chr2_4:11691524-11691543 None:intergenic 45.0%
! AGCTTTTTGTGTCCACCCTA+TGG + chr2_4:11691531-11691550 None:intergenic 45.0%
CTCAACCCGAAACAGTAAAC+AGG - chr2_4:11691673-11691692 Msa0315390:CDS 45.0%
ACCCGAAACAGTAAACAGGA+CGG - chr2_4:11691677-11691696 Msa0315390:CDS 45.0%
ACCGTCCTGTTTACTGTTTC+GGG + chr2_4:11691681-11691700 None:intergenic 45.0%
TGACAAGGTTCACCAAGAAG+AGG - chr2_4:11691783-11691802 Msa0315390:CDS 45.0%
GACAAGGTTCACCAAGAAGA+GGG - chr2_4:11691784-11691803 Msa0315390:CDS 45.0%
GTAACAATCCATTCGCCAAG+TGG - chr2_4:11691806-11691825 Msa0315390:CDS 45.0%
GAAGAGCTGCTCAAAATTGC+TGG - chr2_4:11691887-11691906 Msa0315390:five_prime_UTR 45.0%
AAATAAAAAAGGGGGGGTGG+GGG + chr2_4:11692000-11692019 None:intergenic 45.0%
!! AAAATCATAAAAATAAAAAA+GGG + chr2_4:11692010-11692029 None:intergenic 5.0%
!! AAAAATCATAAAAATAAAAA+AGG + chr2_4:11692011-11692030 None:intergenic 5.0%
! CTTCTTCCAGAGGTTCTGGT+TGG - chr2_4:11688523-11688542 Msa0315390:CDS 50.0%
TTTCGTCCAACCAGAACCTC+TGG + chr2_4:11688532-11688551 None:intergenic 50.0%
! GAGGTTCTGGTTGGACGAAA+TGG - chr2_4:11688532-11688551 Msa0315390:CDS 50.0%
GAACGTAAGCACGATGTCGA+TGG + chr2_4:11688901-11688920 None:intergenic 50.0%
!! AGGAGACTAATGGGCTCAAG+TGG + chr2_4:11689125-11689144 None:intergenic 50.0%
!! ACAGAGAACTGACTCGTCTC+AGG + chr2_4:11689208-11689227 None:intergenic 50.0%
TGCACAGTGCACTGCAAACA+AGG + chr2_4:11689499-11689518 None:intergenic 50.0%
TTGTTTGCAGTGCACTGTGC+AGG - chr2_4:11689498-11689517 Msa0315390:intron 50.0%
ACGCTTACTACCACAGGCTA+TGG - chr2_4:11689651-11689670 Msa0315390:intron 50.0%
! GACTGGTCCAGTGAACTACA+AGG + chr2_4:11689776-11689795 None:intergenic 50.0%
TTATAGCATGTGGCTGGCAC+AGG + chr2_4:11689858-11689877 None:intergenic 50.0%
ATGCTTGACCGAATCGCCTT+TGG + chr2_4:11690319-11690338 None:intergenic 50.0%
CAGAAGGTCTACCTCTTCCA+AGG - chr2_4:11690367-11690386 Msa0315390:intron 50.0%
CATTGGAGACTCCTTGGAAG+AGG + chr2_4:11690381-11690400 None:intergenic 50.0%
GGAAGTCATTGGAGACTCCT+TGG + chr2_4:11690387-11690406 None:intergenic 50.0%
AGCCGAGTATTTCCCACCAA+AGG - chr2_4:11690557-11690576 Msa0315390:CDS 50.0%
! GTGGTGAGTTGGCTAAAGCA+TGG - chr2_4:11690639-11690658 Msa0315390:CDS 50.0%
!! GCAACTGCAGTGGAAGCATT+TGG - chr2_4:11690900-11690919 Msa0315390:intron 50.0%
GTTCGAACTGTGAAAGGCTG+TGG + chr2_4:11690951-11690970 None:intergenic 50.0%
CAATCCATTCGCCAAGTGGA+TGG - chr2_4:11691810-11691829 Msa0315390:CDS 50.0%
TTCTCCATCCACTTGGCGAA+TGG + chr2_4:11691817-11691836 None:intergenic 50.0%
GAGCTACTTCTCCATCCACT+TGG + chr2_4:11691824-11691843 None:intergenic 50.0%
GGATGGAGAAGTAGCTCACA+TGG - chr2_4:11691827-11691846 Msa0315390:CDS 50.0%
AGTAGCTCACATGGACAGCA+CGG - chr2_4:11691836-11691855 Msa0315390:exon 50.0%
ACACACGCATACACACACGT+GGG - chr2_4:11691947-11691966 Msa0315390:five_prime_UTR 50.0%
TACACACACGTGGGAGAGAA+TGG - chr2_4:11691956-11691975 Msa0315390:five_prime_UTR 50.0%
AATAAAAAAGGGGGGGTGGG+GGG + chr2_4:11691999-11692018 None:intergenic 50.0%
TTTGTTCGGGCGCCAAGAGA+TGG + chr2_4:11688605-11688624 None:intergenic 55.0%
AGGTAGACCTTCTGCACGAC+AGG + chr2_4:11690361-11690380 None:intergenic 55.0%
!! TGTACTGGTTTCAGGCGCAG+TGG - chr2_4:11690620-11690639 Msa0315390:CDS 55.0%
TTTCAGGCGCAGTGGTGAGT+TGG - chr2_4:11690628-11690647 Msa0315390:CDS 55.0%
TGCTGTGCTGCCTGTGCATA+AGG - chr2_4:11691445-11691464 Msa0315390:CDS 55.0%
GCTGTGCTGCCTGTGCATAA+GGG - chr2_4:11691446-11691465 Msa0315390:CDS 55.0%
CTGTGCTGCCTGTGCATAAG+GGG - chr2_4:11691447-11691466 Msa0315390:CDS 55.0%
GACACACGCATACACACACG+TGG - chr2_4:11691946-11691965 Msa0315390:five_prime_UTR 55.0%
ATAAAAAAGGGGGGGTGGGG+GGG + chr2_4:11691998-11692017 None:intergenic 55.0%
TCTTGGCGCCCGAACAAACC+AGG - chr2_4:11688607-11688626 Msa0315390:CDS 60.0%
GCACAGGCAGCACAGCAGCA+TGG + chr2_4:11691442-11691461 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 11688068 11692282 11688068 ID=Msa0315390;Name=Msa0315390
chr2_4 mRNA 11688068 11692282 11688068 ID=Msa0315390-mRNA-1;Parent=Msa0315390;Name=Msa0315390-mRNA-1;_AED=0.14;_eAED=0.14;_QI=244|0.45|0.33|1|0.90|0.83|12|0|780
chr2_4 exon 11688068 11688201 11688068 ID=Msa0315390-mRNA-1:exon:4526;Parent=Msa0315390-mRNA-1
chr2_4 exon 11688442 11689162 11688442 ID=Msa0315390-mRNA-1:exon:4525;Parent=Msa0315390-mRNA-1
chr2_4 exon 11689277 11689465 11689277 ID=Msa0315390-mRNA-1:exon:4524;Parent=Msa0315390-mRNA-1
chr2_4 exon 11689571 11689603 11689571 ID=Msa0315390-mRNA-1:exon:4523;Parent=Msa0315390-mRNA-1
chr2_4 exon 11689709 11689807 11689709 ID=Msa0315390-mRNA-1:exon:4522;Parent=Msa0315390-mRNA-1
chr2_4 exon 11689933 11690172 11689933 ID=Msa0315390-mRNA-1:exon:4521;Parent=Msa0315390-mRNA-1
chr2_4 exon 11690541 11690858 11690541 ID=Msa0315390-mRNA-1:exon:4520;Parent=Msa0315390-mRNA-1
chr2_4 exon 11690949 11691006 11690949 ID=Msa0315390-mRNA-1:exon:4519;Parent=Msa0315390-mRNA-1
chr2_4 exon 11691116 11691271 11691116 ID=Msa0315390-mRNA-1:exon:4518;Parent=Msa0315390-mRNA-1
chr2_4 exon 11691365 11691580 11691365 ID=Msa0315390-mRNA-1:exon:4517;Parent=Msa0315390-mRNA-1
chr2_4 exon 11691672 11691995 11691672 ID=Msa0315390-mRNA-1:exon:4516;Parent=Msa0315390-mRNA-1
chr2_4 exon 11692184 11692282 11692184 ID=Msa0315390-mRNA-1:exon:4515;Parent=Msa0315390-mRNA-1
chr2_4 five_prime_UTR 11692184 11692282 11692184 ID=Msa0315390-mRNA-1:five_prime_utr;Parent=Msa0315390-mRNA-1
chr2_4 five_prime_UTR 11691851 11691995 11691851 ID=Msa0315390-mRNA-1:five_prime_utr;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11691672 11691850 11691672 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11691365 11691580 11691365 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11691116 11691271 11691116 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11690949 11691006 11690949 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11690541 11690858 11690541 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11689933 11690172 11689933 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11689709 11689807 11689709 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11689571 11689603 11689571 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11689277 11689465 11689277 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11688442 11689162 11688442 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4 CDS 11688068 11688201 11688068 ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
Gene Sequence

>Msa0315390

ATGTCATTTTCCAGTCTTAAAAACTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCCCGAACAAACCAGGAAACCAGACTACGAAAATACATAATATCCCCATTCAATCCTCAGTATAGGCTTTGGGAGTTGTTACTGATTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACGTATAAGCAAAATGGACTATTCATAATAGACAACATTGTCAATGGCTTCTTTGCCATCGACATCGTGCTTACGTTCTTCGTTGCATACCACGATAGTCATTCTTCTCTTCTCATTGATGATCCAAAGAAAATTGCAACCAGTTACATGTCCACCTGGTTTGTTTTGGATATCTGCTCAACAGCACCACTTGAGCCCATTAGTCTCCTCTTCACTACTTATGACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTACTTCTGGGTTAGGTGTACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTACTTGCAGATATGTACCCTGATTCCAAAAGAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAACAAAGTCTTTGGGACAGATACATAACTTCAATATACTGGTCTATTGTCACGCTTACTACCACAGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGTTGTTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACAGCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCAAAATTTTAGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACGTCGCGTACACAATCAAATGTTGGCACACATTTGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCGATTCGGTCAAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCAATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCCGAGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACATTTATGTACTGGTTTCAGGCGCAGTGAATCTCGTTCACTGCATTGATGGGAATGATCAAGTGGTTTTTGACAAAGCAACTGCAGTGGAAGCATTTGGAGAGATTGGAGTTTTATATAATGTACCACAGCCTTTCACAGTTCGAACTACAGAGCTTTCTCAGATTTTAAGAATCAACAGAACATCCCTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAGATTGTGATGAATAACCTTTTAATGAGATTAAAGGAGCGTGAAGGATTCGACTCTGAATATCCACACACAGATCATGGATTGGTTCTATATAAATTGCTAGGTAACACAAAAGAAAGCTCTTCTCAAGAGTCTACAAATAATTTACATGGCCATTCCTTAATGCATGAAGGAGAGAACATAAATATCAGAGACTCACAGAATAATTTGCATATTGTGACTAATGATGTTTATTCAGACCCTAATAACATGATACCTGAGGATGGCAAAAGAGATCTCCATGCTGCTGTGCTGCCTGTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGATTGAAAGAGATGCAAAAGCACAGAACCCAAATACCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCACTTCTGACCATACAATGTATTGTGAAAGCAAAAAATCAGATGAACATAGAATAGAGATTGTTGAGCCACAAATCCTTAACTTTGGCAAGAATGGCTCAACCCGAAACAGTAAACAGGACGGTATTAGAAATATCAACTTTCCATTAGAGAAAGTGTACACAGACACCAATTCAAGAAATTTTGATTGTCCAAGTGACATAGAAATGACAAGGTTCACCAAGAAGAGGGTAACAATCCATTCGCCAAGTGGATGGAGAAGTAGCTCACATGGACAGCACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAATGCCACAAAAATAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTAGAGATGGTGATCATCTCTTTCTTATTGGCGGTGATATTGACAATTTGAACTCATGA
Protein sequence

>Msa0315390

MSFSSLKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGARTNQETRLRKYIISPFNPQYRLWELLLIVLVIYSAWICPFEFAFLTYKQNGLFIIDNIVNGFFAIDIVLTFFVAYHDSHSSLLIDDPKKIATSYMSTWFVLDICSTAPLEPISLLFTTYDSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCFNYLLADMYPDSKRTWIGAMYPNFKEQSLWDRYITSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTAYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPRRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSNDFLFQLVSEMEAEYFPPKEDVILQNESPTDIYVLVSGAVNLVHCIDGNDQVVFDKATAVEAFGEIGVLYNVPQPFTVRTTELSQILRINRTSLMNVLQANPGDAQIVMNNLLMRLKEREGFDSEYPHTDHGLVLYKLLGNTKESSSQESTNNLHGHSLMHEGENINIRDSQNNLHIVTNDVYSDPNNMIPEDGKRDLHAAVLPVHKGKLDIVEILIERDAKAQNPNTIGWTQKALVQQLKNKSTSDHTMYCESKKSDEHRIEIVEPQILNFGKNGSTRNSKQDGIRNINFPLEKVYTDTNSRNFDCPSDIEMTRFTKKRVTIHSPSGWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNATKIINKENAEIDDIDVIRDGDHLFLIGGDIDNLNS*