AlfalfaGEDB | Msa0315390

M. sativa cultivar zhongmu-4 / Msa0315390

KEGG: K21867
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0007623 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010118 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048511 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0099094
PFAM: PF00520.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315390	XP_003593936.3	96.799	781	23	2	1	780	1	780	0.0	1567

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315390	sp\|Q39128\|KAT1_ARATH	71.372	503	143	1	1	503	1	502	0.0	788
Msa0315390	sp\|Q39128\|KAT1_ARATH	50.538	93	37	2	681	770	588	674	1.38e-16	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0315390	0.830777	2.425334e-55	-8.615850e-47
Msa0002690	Msa0315390	0.804314	2.293008e-49	-8.615850e-47
Msa0002700	Msa0315390	0.808956	2.400589e-50	-8.615850e-47
Msa0003450	Msa0315390	0.823994	1.026335e-53	-8.615850e-47
Msa0005500	Msa0315390	0.820406	6.976656e-53	-8.615850e-47
Msa0007810	Msa0315390	0.804350	2.252941e-49	-8.615850e-47
Msa0011060	Msa0315390	0.806095	9.714033e-50	-8.615850e-47
Msa0011100	Msa0315390	0.807184	5.720841e-50	-8.615850e-47
Msa0014970	Msa0315390	0.840628	7.754171e-58	-8.615850e-47
Msa0016830	Msa0315390	0.807979	3.879441e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315390	MtrunA17_Chr2g0286031	90.308	681	22	4	132	780	16	684	0.0	1250
Msa0315390	MtrunA17_Chr8g0356081	57.253	779	248	7	1	779	1	694	0.0	864
Msa0315390	MtrunA17_Chr4g0063141	62.012	487	180	3	16	500	11	494	0.0	621
Msa0315390	MtrunA17_Chr4g0063141	27.303	304	164	11	511	772	582	870	8.26e-14	75.5
Msa0315390	MtrunA17_Chr2g0277651	41.516	831	390	17	16	776	25	829	0.0	578
Msa0315390	MtrunA17_Chr1g0148981	48.790	537	212	6	24	500	23	556	4.21e-168	511
Msa0315390	MtrunA17_Chr3g0138671	47.529	526	270	5	29	549	21	545	1.76e-158	474
Msa0315390	MtrunA17_Chr3g0138131	53.964	391	174	3	34	421	46	433	2.61e-143	430
Msa0315390	MtrunA17_Chr5g0434371	35.174	489	303	6	16	495	46	529	3.29e-94	312
Msa0315390	MtrunA17_Chr2g0286041	99.237	131	1	0	1	131	1	131	6.61e-87	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0315390	AT5G46240.1	71.372	503	143	1	1	503	1	502	0.0	788
Msa0315390	AT5G46240.1	50.538	93	37	2	681	770	588	674	1.40e-17	87.8
Msa0315390	AT4G18290.1	65.149	571	191	3	1	564	1	570	0.0	770
Msa0315390	AT4G18290.2	65.149	571	191	3	1	564	12	581	0.0	769
Msa0315390	AT4G32500.1	44.186	860	352	22	21	771	37	877	0.0	642
Msa0315390	AT2G25600.1	42.526	863	349	17	29	770	48	884	0.0	633
Msa0315390	AT2G26650.1	61.475	488	179	4	16	500	13	494	0.0	620
Msa0315390	AT2G26650.1	29.046	241	131	10	554	768	625	851	5.75e-13	73.2
Msa0315390	AT4G22200.1	41.013	790	392	21	29	775	43	801	0.0	550
Msa0315390	AT2G26650.2	63.291	395	137	3	108	500	1	389	2.19e-172	514

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Find 154 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTCCAGAGGTTC+TGG	0.295107	2_4:-11691809	Msa0315390:CDS
AAAGGTCATCACCTATACTG+AGG	0.699640	2_4:+11691660	None:intergenic
AATAACATGATACCTGAGGA+TGG	0.636817	2_4:-11688924	Msa0315390:CDS
AATCCTCAAAGCTTCAAAAG+AGG	0.556400	2_4:+11691870	None:intergenic
AATCTCGTTCACTGCATTGA+TGG	0.422427	2_4:-11689581	Msa0315390:CDS
AATGATATAGGTTTCAGAAA+TGG	0.426448	2_4:-11689795	Msa0315390:intron
ACAATCAAAATTTCTTGAAT+TGG	0.300844	2_4:+11688584	None:intergenic
ACAGAGAACTGACTCGTCTC+AGG	0.489086	2_4:+11691123	None:intergenic
ACATTCGCTTCAATTACTTC+TGG	0.279463	2_4:-11690973	Msa0315390:CDS
ACCAATCCATGATCTGTGTG+TGG	0.672562	2_4:+11689104	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTGTTTCTTGTTCTATTT+AGG	+	chr2_4:11688091-11688110	None:intergenic	30.0%
AGAAATAGAAGGAAAGATGA+TGG	+	chr2_4:11688212-11688231	None:intergenic	30.0%
AAAGCTTGTGAAGAAATAGA+AGG	+	chr2_4:11688223-11688242	None:intergenic	30.0%
ATAAATGAGTGGTAAAAACG+TGG	+	chr2_4:11688277-11688296	None:intergenic	30.0%
TGAAAGTCTGGCTATAAATA+TGG	-	chr2_4:11688386-11688405	Msa0315390:intron	30.0%
ATTCATGAGGTAGAATTCTA+TGG	+	chr2_4:11688418-11688437	None:intergenic	30.0%
TTTCTGACGTATAAGCAAAA+TGG	-	chr2_4:11688837-11688856	Msa0315390:CDS	30.0%
TTCTTAACATGTTGCGATTA+TGG	-	chr2_4:11689180-11689199	Msa0315390:intron	30.0%
TGAAATTGTATAGGAAGTAG+GGG	+	chr2_4:11689429-11689448	None:intergenic	30.0%
CTTGAAATTGTATAGGAAGT+AGG	+	chr2_4:11689431-11689450	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	11688068	11692282	11688068	ID=Msa0315390;Name=Msa0315390
chr2_4	mRNA	11688068	11692282	11688068	ID=Msa0315390-mRNA-1;Parent=Msa0315390;Name=Msa0315390-mRNA-1;_AED=0.14;_eAED=0.14;_QI=244\|0.45\|0.33\|1\|0.90\|0.83\|12\|0\|780
chr2_4	exon	11688068	11688201	11688068	ID=Msa0315390-mRNA-1:exon:4526;Parent=Msa0315390-mRNA-1
chr2_4	exon	11688442	11689162	11688442	ID=Msa0315390-mRNA-1:exon:4525;Parent=Msa0315390-mRNA-1
chr2_4	exon	11689277	11689465	11689277	ID=Msa0315390-mRNA-1:exon:4524;Parent=Msa0315390-mRNA-1
chr2_4	exon	11689571	11689603	11689571	ID=Msa0315390-mRNA-1:exon:4523;Parent=Msa0315390-mRNA-1
chr2_4	exon	11689709	11689807	11689709	ID=Msa0315390-mRNA-1:exon:4522;Parent=Msa0315390-mRNA-1
chr2_4	exon	11689933	11690172	11689933	ID=Msa0315390-mRNA-1:exon:4521;Parent=Msa0315390-mRNA-1
chr2_4	exon	11690541	11690858	11690541	ID=Msa0315390-mRNA-1:exon:4520;Parent=Msa0315390-mRNA-1
chr2_4	exon	11690949	11691006	11690949	ID=Msa0315390-mRNA-1:exon:4519;Parent=Msa0315390-mRNA-1
chr2_4	exon	11691116	11691271	11691116	ID=Msa0315390-mRNA-1:exon:4518;Parent=Msa0315390-mRNA-1
chr2_4	exon	11691365	11691580	11691365	ID=Msa0315390-mRNA-1:exon:4517;Parent=Msa0315390-mRNA-1
chr2_4	exon	11691672	11691995	11691672	ID=Msa0315390-mRNA-1:exon:4516;Parent=Msa0315390-mRNA-1
chr2_4	exon	11692184	11692282	11692184	ID=Msa0315390-mRNA-1:exon:4515;Parent=Msa0315390-mRNA-1
chr2_4	five_prime_UTR	11692184	11692282	11692184	ID=Msa0315390-mRNA-1:five_prime_utr;Parent=Msa0315390-mRNA-1
chr2_4	five_prime_UTR	11691851	11691995	11691851	ID=Msa0315390-mRNA-1:five_prime_utr;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11691672	11691850	11691672	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11691365	11691580	11691365	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11691116	11691271	11691116	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11690949	11691006	11690949	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11690541	11690858	11690541	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11689933	11690172	11689933	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11689709	11689807	11689709	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11689571	11689603	11689571	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11689277	11689465	11689277	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11688442	11689162	11688442	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1
chr2_4	CDS	11688068	11688201	11688068	ID=Msa0315390-mRNA-1:cds;Parent=Msa0315390-mRNA-1

Gene Sequence

>Msa0315390

ATGTCATTTTCCAGTCTTAAAAACTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCCCGAACAAACCAGGAAACCAGACTACGAAAATACATAATATCCCCATTCAATCCTCAGTATAGGCTTTGGGAGTTGTTACTGATTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACGTATAAGCAAAATGGACTATTCATAATAGACAACATTGTCAATGGCTTCTTTGCCATCGACATCGTGCTTACGTTCTTCGTTGCATACCACGATAGTCATTCTTCTCTTCTCATTGATGATCCAAAGAAAATTGCAACCAGTTACATGTCCACCTGGTTTGTTTTGGATATCTGCTCAACAGCACCACTTGAGCCCATTAGTCTCCTCTTCACTACTTATGACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTACTTCTGGGTTAGGTGTACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTACTTGCAGATATGTACCCTGATTCCAAAAGAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAACAAAGTCTTTGGGACAGATACATAACTTCAATATACTGGTCTATTGTCACGCTTACTACCACAGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGTTGTTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACAGCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCAAAATTTTAGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACGTCGCGTACACAATCAAATGTTGGCACACATTTGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCGATTCGGTCAAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCAATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCCGAGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACATTTATGTACTGGTTTCAGGCGCAGTGAATCTCGTTCACTGCATTGATGGGAATGATCAAGTGGTTTTTGACAAAGCAACTGCAGTGGAAGCATTTGGAGAGATTGGAGTTTTATATAATGTACCACAGCCTTTCACAGTTCGAACTACAGAGCTTTCTCAGATTTTAAGAATCAACAGAACATCCCTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAGATTGTGATGAATAACCTTTTAATGAGATTAAAGGAGCGTGAAGGATTCGACTCTGAATATCCACACACAGATCATGGATTGGTTCTATATAAATTGCTAGGTAACACAAAAGAAAGCTCTTCTCAAGAGTCTACAAATAATTTACATGGCCATTCCTTAATGCATGAAGGAGAGAACATAAATATCAGAGACTCACAGAATAATTTGCATATTGTGACTAATGATGTTTATTCAGACCCTAATAACATGATACCTGAGGATGGCAAAAGAGATCTCCATGCTGCTGTGCTGCCTGTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGATTGAAAGAGATGCAAAAGCACAGAACCCAAATACCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCACTTCTGACCATACAATGTATTGTGAAAGCAAAAAATCAGATGAACATAGAATAGAGATTGTTGAGCCACAAATCCTTAACTTTGGCAAGAATGGCTCAACCCGAAACAGTAAACAGGACGGTATTAGAAATATCAACTTTCCATTAGAGAAAGTGTACACAGACACCAATTCAAGAAATTTTGATTGTCCAAGTGACATAGAAATGACAAGGTTCACCAAGAAGAGGGTAACAATCCATTCGCCAAGTGGATGGAGAAGTAGCTCACATGGACAGCACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAATGCCACAAAAATAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTAGAGATGGTGATCATCTCTTTCTTATTGGCGGTGATATTGACAATTTGAACTCATGA

Protein sequence

>Msa0315390

MSFSSLKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGARTNQETRLRKYIISPFNPQYRLWELLLIVLVIYSAWICPFEFAFLTYKQNGLFIIDNIVNGFFAIDIVLTFFVAYHDSHSSLLIDDPKKIATSYMSTWFVLDICSTAPLEPISLLFTTYDSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCFNYLLADMYPDSKRTWIGAMYPNFKEQSLWDRYITSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTAYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPRRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSNDFLFQLVSEMEAEYFPPKEDVILQNESPTDIYVLVSGAVNLVHCIDGNDQVVFDKATAVEAFGEIGVLYNVPQPFTVRTTELSQILRINRTSLMNVLQANPGDAQIVMNNLLMRLKEREGFDSEYPHTDHGLVLYKLLGNTKESSSQESTNNLHGHSLMHEGENINIRDSQNNLHIVTNDVYSDPNNMIPEDGKRDLHAAVLPVHKGKLDIVEILIERDAKAQNPNTIGWTQKALVQQLKNKSTSDHTMYCESKKSDEHRIEIVEPQILNFGKNGSTRNSKQDGIRNINFPLEKVYTDTNSRNFDCPSDIEMTRFTKKRVTIHSPSGWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNATKIINKENAEIDDIDVIRDGDHLFLIGGDIDNLNS*