AlfalfaGEDB | Msa1034400

M. sativa cultivar zhongmu-4 / Msa1034400

KEGG: K10406
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
PFAM: PF00307.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034400	RHN47836.1	91.345	1063	53	6	1	1028	1	1059	0.0	1961

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034400	sp\|F4J2M6\|KN14L_ARATH	53.433	1005	356	19	11	1005	4	906	0.0	940

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034400	A0A396H3D8	91.345	1063	53	6	1	1028	1	1059	0.0	1961

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016040	Msa1034400	0.801174	1.019835e-48	-8.615850e-47
Msa0016530	Msa1034400	0.812928	3.312031e-51	-8.615850e-47
Msa0020540	Msa1034400	0.833576	4.925822e-56	-8.615850e-47
Msa0027800	Msa1034400	0.825571	4.359171e-54	-8.615850e-47
Msa0030070	Msa1034400	0.822729	2.026543e-53	-8.615850e-47
Msa0030690	Msa1034400	0.808512	2.986283e-50	-8.615850e-47
Msa0032980	Msa1034400	0.818286	2.121928e-52	-8.615850e-47
Msa0037740	Msa1034400	0.803182	3.939015e-49	-8.615850e-47
Msa0038940	Msa1034400	0.809660	1.695151e-50	-8.615850e-47
Msa0040640	Msa1034400	0.803025	4.244743e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034400	MtrunA17_Chr7g0257301	91.345	1063	53	6	1	1028	1	1059	0.0	1961
Msa1034400	MtrunA17_Chr3g0102921	45.387	802	367	19	12	774	41	810	0.0	618
Msa1034400	MtrunA17_Chr1g0195111	57.642	458	162	5	321	774	326	755	3.88e-170	525
Msa1034400	MtrunA17_Chr1g0195111	49.306	144	64	3	14	154	25	162	5.58e-34	141
Msa1034400	MtrunA17_Chr1g0192481	57.243	428	156	4	346	771	13	415	5.54e-167	502
Msa1034400	MtrunA17_Chr5g0447041	53.535	495	197	6	314	775	342	836	9.24e-167	521
Msa1034400	MtrunA17_Chr5g0447041	49.306	144	65	3	12	153	37	174	7.11e-32	135
Msa1034400	MtrunA17_Chr7g0271961	54.371	469	175	5	311	774	321	755	4.95e-163	506
Msa1034400	MtrunA17_Chr7g0271961	48.428	159	72	4	14	168	28	180	6.90e-35	144
Msa1034400	MtrunA17_Chr7g0269691	39.254	563	291	14	12	551	27	561	4.31e-115	366

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034400	AT3G10310.2	51.831	1065	365	21	11	1027	4	968	0.0	955
Msa1034400	AT3G10310.1	53.525	1007	356	20	11	1005	4	910	0.0	943
Msa1034400	AT3G44730.2	44.472	805	360	18	14	774	21	782	0.0	615
Msa1034400	AT3G44730.3	44.472	805	360	18	14	774	21	782	0.0	615
Msa1034400	AT5G27000.1	40.615	943	426	23	2	901	22	873	0.0	613
Msa1034400	AT3G44730.1	44.603	769	341	17	48	774	12	737	0.0	587
Msa1034400	AT3G44730.4	44.603	769	341	17	48	774	12	737	0.0	587
Msa1034400	AT1G09170.4	53.635	509	196	6	303	808	346	817	6.59e-170	520
Msa1034400	AT1G09170.4	42.754	138	69	4	27	161	55	185	6.23e-27	119
Msa1034400	AT1G09170.2	53.635	509	196	6	303	808	346	817	7.07e-169	518

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Find 221 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCCTACATGCATCAGA+GGG	0.680840	7_1:+69863090	None:intergenic
AAACGGTGGCTATAGACAAC+AGG	0.516688	7_1:-69857579	Msa1034400:exon
AAAGCAAGACTTCGAAACGG+TGG	0.700538	7_1:-69857593	Msa1034400:CDS
AAATACTGATATGCAGGTAA+AGG	0.509302	7_1:+69863672	None:intergenic
AAATTTGTGGGACACGTTCT+TGG	0.332808	7_1:+69864538	None:intergenic
AACAAGTCTCTTTCCTGTTT+GGG	0.298943	7_1:-69859364	Msa1034400:CDS
AACATGGTCCAAGATTTGAA+AGG	0.626815	7_1:-69860776	Msa1034400:intron
AACCTCTCCAAGTTTCATGA+GGG	0.645480	7_1:+69859684	None:intergenic
AAGAAAGCATACTTCTTATC+AGG	0.371962	7_1:+69858233	None:intergenic
AAGACTGTAGTTGATTTCAT+TGG	0.341996	7_1:-69860606	Msa1034400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAATGAGAAGAGAAAAA+AGG	+	chr7_1:69857489-69857508	None:intergenic	30.0%
ATGGAGAATTGTTCAAGAAA+TGG	-	chr7_1:69857642-69857661	Msa1034400:intron	30.0%
TGGAGAATTGTTCAAGAAAT+GGG	-	chr7_1:69857643-69857662	Msa1034400:intron	30.0%
CAATCAAATTGCAATACCTT+AGG	+	chr7_1:69858003-69858022	None:intergenic	30.0%
AAATACTGATATGCAGGTAA+AGG	+	chr7_1:69858216-69858235	None:intergenic	30.0%
AAAACCAGGGTTTAAATGAT+GGG	-	chr7_1:69858423-69858442	Msa1034400:CDS	30.0%
TTCAAATGTGACCTAAATTG+AGG	-	chr7_1:69858460-69858479	Msa1034400:CDS	30.0%
TTAAAGTGCAAAATGTCAAC+TGG	+	chr7_1:69859016-69859035	None:intergenic	30.0%
ATACAATTATTAGGGACACA+AGG	+	chr7_1:69859433-69859452	None:intergenic	30.0%
TTTCTTTGGCATAAAGCATA+CGG	+	chr7_1:69859520-69859539	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	69857334	69864573	69857334	ID=Msa1034400;Name=Msa1034400
chr7_1	mRNA	69857334	69864573	69857334	ID=Msa1034400-mRNA-1;Parent=Msa1034400;Name=Msa1034400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=299\|0.88\|0.84\|1\|0.88\|0.89\|19\|253\|1028
chr7_1	exon	69857334	69857660	69857334	ID=Msa1034400-mRNA-1:exon:16570;Parent=Msa1034400-mRNA-1
chr7_1	exon	69858063	69858148	69858063	ID=Msa1034400-mRNA-1:exon:16569;Parent=Msa1034400-mRNA-1
chr7_1	exon	69858245	69858885	69858245	ID=Msa1034400-mRNA-1:exon:16568;Parent=Msa1034400-mRNA-1
chr7_1	exon	69859005	69859168	69859005	ID=Msa1034400-mRNA-1:exon:16567;Parent=Msa1034400-mRNA-1
chr7_1	exon	69859278	69859528	69859278	ID=Msa1034400-mRNA-1:exon:16566;Parent=Msa1034400-mRNA-1
chr7_1	exon	69859631	69859815	69859631	ID=Msa1034400-mRNA-1:exon:16565;Parent=Msa1034400-mRNA-1
chr7_1	exon	69859882	69860118	69859882	ID=Msa1034400-mRNA-1:exon:16564;Parent=Msa1034400-mRNA-1
chr7_1	exon	69860286	69860392	69860286	ID=Msa1034400-mRNA-1:exon:16563;Parent=Msa1034400-mRNA-1
chr7_1	exon	69860505	69860678	69860505	ID=Msa1034400-mRNA-1:exon:16562;Parent=Msa1034400-mRNA-1
chr7_1	exon	69860777	69860872	69860777	ID=Msa1034400-mRNA-1:exon:16561;Parent=Msa1034400-mRNA-1
chr7_1	exon	69860975	69861056	69860975	ID=Msa1034400-mRNA-1:exon:16560;Parent=Msa1034400-mRNA-1
chr7_1	exon	69861183	69861254	69861183	ID=Msa1034400-mRNA-1:exon:16559;Parent=Msa1034400-mRNA-1
chr7_1	exon	69861492	69861593	69861492	ID=Msa1034400-mRNA-1:exon:16558;Parent=Msa1034400-mRNA-1
chr7_1	exon	69862143	69862214	69862143	ID=Msa1034400-mRNA-1:exon:16557;Parent=Msa1034400-mRNA-1
chr7_1	exon	69862324	69862427	69862324	ID=Msa1034400-mRNA-1:exon:16556;Parent=Msa1034400-mRNA-1
chr7_1	exon	69863028	69863283	69863028	ID=Msa1034400-mRNA-1:exon:16555;Parent=Msa1034400-mRNA-1
chr7_1	exon	69863596	69863745	69863596	ID=Msa1034400-mRNA-1:exon:16554;Parent=Msa1034400-mRNA-1
chr7_1	exon	69863902	69864059	69863902	ID=Msa1034400-mRNA-1:exon:16553;Parent=Msa1034400-mRNA-1
chr7_1	exon	69864199	69864573	69864199	ID=Msa1034400-mRNA-1:exon:16552;Parent=Msa1034400-mRNA-1
chr7_1	five_prime_UTR	69864275	69864573	69864275	ID=Msa1034400-mRNA-1:five_prime_utr;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69864199	69864274	69864199	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69863902	69864059	69863902	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69863596	69863745	69863596	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69863028	69863283	69863028	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69862324	69862427	69862324	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69862143	69862214	69862143	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69861492	69861593	69861492	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69861183	69861254	69861183	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69860975	69861056	69860975	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69860777	69860872	69860777	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69860505	69860678	69860505	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69860286	69860392	69860286	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69859882	69860118	69859882	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69859631	69859815	69859631	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69859278	69859528	69859278	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69859005	69859168	69859005	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69858245	69858885	69858245	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69858063	69858148	69858063	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	CDS	69857587	69857660	69857587	ID=Msa1034400-mRNA-1:cds;Parent=Msa1034400-mRNA-1
chr7_1	three_prime_UTR	69857334	69857586	69857334	ID=Msa1034400-mRNA-1:three_prime_utr;Parent=Msa1034400-mRNA-1

Gene Sequence

>Msa1034400

ATGATCATGATGGAGAATTGTTCAAGAAATGGGTTTCATGATTTCAAAATGTCTTCAAGAAAAGCTGAAGAAGCAGCTTTGAGACGTTATGAAGCAACCCAATGGCTTGAAAACCAAGTGGGTCCTCTTGGAATATCACATCAACCTACTGAGAGAGAACTTGTTTCTTGCTTGAGAAATGGTCTCATTCTTTGTAAAGCCATTAACAAGATTCATCCTGGTGCAGTACCTAAGGTTGTTGATACTCAAGTGCCATTACAACAATCCCTTGCTTGGGATTCTCAGCCTTTACCTGCATATCAGTATTTTGAAAATGTGCGCAATTTTTTGAACGCGGCTGATGAATTAAAGCTTCCCGCTTTTGAAGCTTCTGATCTTGAAAGGGAAAGTGTAGAGAATGGTTCTGCAGGAAAAATTGTTGATTGTATTCTATCACTTAAATGGTTTCATGAGTCGAAGCAGATGAGCAATCAAAGTGGATCCAGCAAACGCTCAAAATCTCCTTTAGTTTTGCAATCAATCAATAGATTGCAACAAAAAGCCACTACTGCATTACCCTCTGATGCATGTAGGCGTTTGGATTTGTCTGCAACATCGGAAATAAAGCCTCCTGCTGAGAGTAATGTTCAAAAACAAGAAGCAGAAACTGTGGAGTCACTTGCCAATATGCTCGTTGACCGTATGCTTTATGCCAAAGAAAATATCGATGGAAATCTTTTTGCTTCTCTTCGCAATGGAAACCTGGATCAAATAGACCTATTTAATCAGATTTTGACTGGTTGTTGTGTGGAACAGCCATCTATGAAGTTCCCTGAGTTGCTATTAAAGAATTTTAAAAAAGAAGGGAGTAGCTTACCACCTCATTTCACTTCCAAACCTACAGAATCAGACACTTTCTCTGCACGTCAAAATCCCAAGTGTAGAGCTTGCTCTGGAAAGTGCACTTGCAACCACAAGCATCTCATAGATATACAGAAAAAAGAACTTCAGGATCTCAAAGCATTGAAGTTGAAAATTAAGAATGAGTTTGAAGAAATGCAATCACAGTTTCAGAGTTTTTTCAAAGATATAGGTTGTCAAGTTAATGAGATGTCAACCAAAGCTCTTGGCTATCAAAAAGTAGTCGAAGAGAACAGAAAGCTATACAACATGGTCCAAGATTTGAAAGGCAACATTCGAGTATACTGCAGAATCAGACCTACATTTAGGGCTGAATCCAAGACTGTAGTTGATTTCATTGGGGAAGACGGTTCTCTGTGCATTTTAGATCCATCAAAAACACTAAAAGATGGAAGAAAACTGTTTCAGTTTAATCGGATTTTTGGTCCAACAGCTGGCCAAGATGAGGTTTATAGGGACACTCAACCATTAATTAGATCAGTGATGGATGGATACAACGTTTGTATTTTTGCTTATGGTCAAACTGGATCTGGGAAGACTCACACAATGAGTGGTCCTTCAGGAGGAACATCCAAGGATATGGGAATCAATTATTTGGCTCTTAATGATTTGTTTCAAATGTCTAGTGAAAGGAAGGACAACATAAAGTATGAAATTTATGTCCAAATGGTCGAGATTTACAATGAACAAGTAAGAGATCTACTTGCAGAGGACAAAACAGAAAACAAATATCCTTTTTCATATTCATTCTTCAATAAATATTGTCAGAAATATATTCATACTATTTTTATTTCCTTAACTGACCTCACATTAGAGATCCGGAGCTGCAACGATGATGGCTTGAGCCTTCCTGATGCTAGATTGCGGTCAGTGAACTCTACAACGGATGTTATGACCCTCATGAAACTTGGAGAGGTTAACCGTGCTGTCAGTTCTACTGCAATCAACAATAGGAGTAGTCGTTCACACAGTGTACTTACTGTGCATGTTAGTGGCAAAGATACATCCGGGAACTGCATTCGCAGTTGCCTTCATTTAGTAGACCTTGCCGGAAGTGAAAGAGTAGACAAATCTGAAGTCACAGGAGATAGACTAAAGGAAGCGCTATACATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACGGCGCTGGCTCAGAAGAATTCTCACATTCCTTACAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGACATGCTAAAACATTAATGTTTGCGCATGTGAGTCCCGAAGCAGATTCCTTTGGTGAAACAGTGAGTACTCTGAAGTTTGCTCAGAGGGTTTCCACTGTGGATCTTGGGGCTGCCCGGATGAACAAAGAAACCAGTGAGGTTATGCAACTTAAAGCACAGGTTGAGAACCTTAAGATTGCATTGGCAAACAAGGAAAACTCAAAACCAATGTTCAATAGAACTAAAGAATTCGACACTCCGCTAGAAAAAACTCCACTGCGCCCACGAAGACTTAGTATTGAGAATTGCAGCGGAATAAAGACCAACAAACCTGTGAAAGCTGATGATAAAAATGGAGCTAAATCACCTTCTTATATAGCCCGTTCAAGAAGATTAAGCTTGGAAGGTCCAAGAACTGTCAAAAAAGCACCGGCATGTGTAAACAAAACTTTACAGTTTGAGCCAATATCTCAACAGAAAGATCGTCCACAGCAAGATCCAGAAGCAGTGTCAAAGCTAAATGGCCAATTAAGCAATGGCAATTCCAGGTCAGAGTTGCATGTCAAAGCTCCTCCAAGTCCTACGAACATGTATCAGAAGAGGTGTATAAAAGTTGATAGTGAAGTAGTCCAAATTCACCCACATGATCTACCTGAAACACCTGAAGCACAAATGCTAGATAAAAATGATTCAAACAGAATTGTGCCAAGTGACATTGCTGAGTCCATAACAGCTAAGGTTATAGGCACAAATGGAAAAGGGTCCCAGTTTAGAAGATCCCTAAGAACAATTGGGAAACTGATTAATGGACCTGATAAGAAAAACCAACAAATTATGGTTGAAGTGAAGTCACCTGTCAAGGGAAGCAGCACTTATGGAAGTCAGATAAAGTCGCCAATAGCAGCTAATGAGACAGAGAGAAATGCTAGAACGCCTCCTCCTGTTCGTTCAGAAAGCAAGACTTCGAAACGGTGGCTATAG

Protein sequence

>Msa1034400

MIMMENCSRNGFHDFKMSSRKAEEAALRRYEATQWLENQVGPLGISHQPTERELVSCLRNGLILCKAINKIHPGAVPKVVDTQVPLQQSLAWDSQPLPAYQYFENVRNFLNAADELKLPAFEASDLERESVENGSAGKIVDCILSLKWFHESKQMSNQSGSSKRSKSPLVLQSINRLQQKATTALPSDACRRLDLSATSEIKPPAESNVQKQEAETVESLANMLVDRMLYAKENIDGNLFASLRNGNLDQIDLFNQILTGCCVEQPSMKFPELLLKNFKKEGSSLPPHFTSKPTESDTFSARQNPKCRACSGKCTCNHKHLIDIQKKELQDLKALKLKIKNEFEEMQSQFQSFFKDIGCQVNEMSTKALGYQKVVEENRKLYNMVQDLKGNIRVYCRIRPTFRAESKTVVDFIGEDGSLCILDPSKTLKDGRKLFQFNRIFGPTAGQDEVYRDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSGGTSKDMGINYLALNDLFQMSSERKDNIKYEIYVQMVEIYNEQVRDLLAEDKTENKYPFSYSFFNKYCQKYIHTIFISLTDLTLEIRSCNDDGLSLPDARLRSVNSTTDVMTLMKLGEVNRAVSSTAINNRSSRSHSVLTVHVSGKDTSGNCIRSCLHLVDLAGSERVDKSEVTGDRLKEALYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVDLGAARMNKETSEVMQLKAQVENLKIALANKENSKPMFNRTKEFDTPLEKTPLRPRRLSIENCSGIKTNKPVKADDKNGAKSPSYIARSRRLSLEGPRTVKKAPACVNKTLQFEPISQQKDRPQQDPEAVSKLNGQLSNGNSRSELHVKAPPSPTNMYQKRCIKVDSEVVQIHPHDLPETPEAQMLDKNDSNRIVPSDIAESITAKVIGTNGKGSQFRRSLRTIGKLINGPDKKNQQIMVEVKSPVKGSSTYGSQIKSPIAANETERNARTPPPVRSESKTSKRWL*