Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1412660 | A0A072VMA2 | 98.540 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 1.29e-90 | 268 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004060 | Msa1412660 | 0.806077 | 9.800679e-50 | -8.615850e-47 |
Msa0004540 | Msa1412660 | 0.805107 | 1.565866e-49 | -8.615850e-47 |
Msa0007850 | Msa1412660 | 0.802180 | 6.339919e-49 | -8.615850e-47 |
Msa0017390 | Msa1412660 | 0.813636 | 2.315580e-51 | -8.615850e-47 |
Msa0028930 | Msa1412660 | 0.802123 | 6.512536e-49 | -8.615850e-47 |
Msa0033880 | Msa1412660 | 0.852263 | 5.177394e-61 | -8.615850e-47 |
Msa0039250 | Msa1412660 | 0.801688 | 8.000204e-49 | -8.615850e-47 |
Msa0048180 | Msa1412660 | 0.806431 | 8.251966e-50 | -8.615850e-47 |
Msa0057590 | Msa1412660 | 0.807647 | 4.564848e-50 | -8.615850e-47 |
Msa0065010 | Msa1412660 | 0.802685 | 4.989154e-49 | -8.615850e-47 |
Msa0065550 | Msa1412660 | 0.820720 | 5.910244e-53 | -8.615850e-47 |
Msa0077900 | Msa1412660 | 0.810672 | 1.026085e-50 | -8.615850e-47 |
Msa0081210 | Msa1412660 | 0.977789 | 1.728116e-144 | -8.615850e-47 |
Msa0101180 | Msa1412660 | 0.802424 | 5.646171e-49 | -8.615850e-47 |
Msa0105520 | Msa1412660 | 0.814723 | 1.332090e-51 | -8.615850e-47 |
Msa0115370 | Msa1412660 | 0.816106 | 6.559693e-52 | -8.615850e-47 |
Msa1348650 | Msa1412660 | -0.809577 | 1.766775e-50 | -8.615850e-47 |
Msa1351540 | Msa1412660 | 0.826356 | 2.837877e-54 | -8.615850e-47 |
Msa1362420 | Msa1412660 | 0.804355 | 2.247612e-49 | -8.615850e-47 |
Msa1373820 | Msa1412660 | 0.833113 | 6.427082e-56 | -8.615850e-47 |
Msa1381480 | Msa1412660 | 0.805437 | 1.335698e-49 | -8.615850e-47 |
Msa1383530 | Msa1412660 | 0.804203 | 2.418036e-49 | -8.615850e-47 |
Msa1411950 | Msa1412660 | 0.824114 | 9.619468e-54 | -8.615850e-47 |
Msa1412660 | Msa1416370 | 0.892181 | 2.011041e-74 | -8.615850e-47 |
Msa1412660 | Msa1432480 | 0.816303 | 5.929608e-52 | -8.615850e-47 |
Msa1412660 | Msa1450720 | 0.803816 | 2.909778e-49 | -8.615850e-47 |
Msa1412660 | Msa1454450 | 0.814581 | 1.432130e-51 | -8.615850e-47 |
Msa1412660 | Msa1454680 | 0.807866 | 4.100937e-50 | -8.615850e-47 |
Msa0618930 | Msa1412660 | 0.801837 | 7.458352e-49 | -8.615850e-47 |
Msa0628420 | Msa1412660 | 0.813108 | 3.023644e-51 | -8.615850e-47 |
Msa0633570 | Msa1412660 | 0.803627 | 3.184934e-49 | -8.615850e-47 |
Msa0644030 | Msa1412660 | 0.846499 | 2.090765e-59 | -8.615850e-47 |
Msa0658480 | Msa1412660 | 0.805520 | 1.283134e-49 | -8.615850e-47 |
Msa0666230 | Msa1412660 | 0.826236 | 3.031169e-54 | -8.615850e-47 |
Msa0669180 | Msa1412660 | 0.804306 | 2.300941e-49 | -8.615850e-47 |
Msa0673270 | Msa1412660 | 0.806972 | 6.343363e-50 | -8.615850e-47 |
Msa0705390 | Msa1412660 | 0.810083 | 1.374746e-50 | -8.615850e-47 |
Msa0712560 | Msa1412660 | 0.807154 | 5.806770e-50 | -8.615850e-47 |
Msa0716410 | Msa1412660 | 0.802592 | 5.214596e-49 | -8.615850e-47 |
Msa0748920 | Msa1412660 | 0.808083 | 3.685643e-50 | -8.615850e-47 |
Msa0751010 | Msa1412660 | 0.810152 | 1.328842e-50 | -8.615850e-47 |
Msa0756930 | Msa1412660 | 0.813286 | 2.763571e-51 | -8.615850e-47 |
Msa0794050 | Msa1412660 | 0.809127 | 2.206309e-50 | -8.615850e-47 |
Msa0804250 | Msa1412660 | 0.804676 | 1.926822e-49 | -8.615850e-47 |
Msa0809980 | Msa1412660 | 0.822637 | 2.129265e-53 | -8.615850e-47 |
Msa0818770 | Msa1412660 | 0.819293 | 1.253449e-52 | -8.615850e-47 |
Msa0826150 | Msa1412660 | 0.805497 | 1.297578e-49 | -8.615850e-47 |
Msa0826500 | Msa1412660 | 0.829596 | 4.711444e-55 | -8.615850e-47 |
Msa0833190 | Msa1412660 | -0.815387 | 9.490629e-52 | -8.615850e-47 |
Msa0836500 | Msa1412660 | 0.810996 | 8.731170e-51 | -8.615850e-47 |
Msa0123510 | Msa1412660 | 0.802400 | 5.711143e-49 | -8.615850e-47 |
Msa0126770 | Msa1412660 | 0.816863 | 4.440471e-52 | -8.615850e-47 |
Msa0126840 | Msa1412660 | 0.803333 | 3.665864e-49 | -8.615850e-47 |
Msa0126880 | Msa1412660 | 0.802882 | 4.543044e-49 | -8.615850e-47 |
Msa0127040 | Msa1412660 | 0.808761 | 2.641948e-50 | -8.615850e-47 |
Msa0127850 | Msa1412660 | 0.843791 | 1.127620e-58 | -8.615850e-47 |
Msa0133720 | Msa1412660 | 0.800682 | 1.285309e-48 | -8.615850e-47 |
Msa0136120 | Msa1412660 | 0.803423 | 3.510793e-49 | -8.615850e-47 |
Msa0147980 | Msa1412660 | 0.806324 | 8.694218e-50 | -8.615850e-47 |
Msa0167480 | Msa1412660 | 0.811053 | 8.484854e-51 | -8.615850e-47 |
Msa0171850 | Msa1412660 | 0.808762 | 2.641101e-50 | -8.615850e-47 |
Msa0174000 | Msa1412660 | 0.847986 | 8.173192e-60 | -8.615850e-47 |
Msa0177210 | Msa1412660 | 0.808199 | 3.482112e-50 | -8.615850e-47 |
Msa0188350 | Msa1412660 | 0.802525 | 5.382856e-49 | -8.615850e-47 |
Msa0202110 | Msa1412660 | 0.822110 | 2.823090e-53 | -8.615850e-47 |
Msa0223170 | Msa1412660 | 0.804297 | 2.311033e-49 | -8.615850e-47 |
Msa0231100 | Msa1412660 | 0.810746 | 9.888113e-51 | -8.615850e-47 |
Msa1226610 | Msa1412660 | 0.807640 | 4.580194e-50 | -8.615850e-47 |
Msa1253810 | Msa1412660 | 0.802731 | 4.882130e-49 | -8.615850e-47 |
Msa1265590 | Msa1412660 | 0.821253 | 4.455028e-53 | -8.615850e-47 |
Msa1265630 | Msa1412660 | 0.800450 | 1.432904e-48 | -8.615850e-47 |
Msa1270620 | Msa1412660 | 0.801923 | 7.161789e-49 | -8.615850e-47 |
Msa1270690 | Msa1412660 | 0.801358 | 9.349967e-49 | -8.615850e-47 |
Msa1275110 | Msa1412660 | 0.804045 | 2.607570e-49 | -8.615850e-47 |
Msa1277080 | Msa1412660 | 0.802617 | 5.152017e-49 | -8.615850e-47 |
Msa1278900 | Msa1412660 | 0.802791 | 4.744543e-49 | -8.615850e-47 |
Msa1294840 | Msa1412660 | 0.804094 | 2.547036e-49 | -8.615850e-47 |
Msa1294960 | Msa1412660 | 0.824467 | 7.946927e-54 | -8.615850e-47 |
Msa1307180 | Msa1412660 | 0.803338 | 3.656759e-49 | -8.615850e-47 |
Msa1329450 | Msa1412660 | 0.800944 | 1.136580e-48 | -8.615850e-47 |
Msa1331250 | Msa1412660 | 0.814296 | 1.655669e-51 | -8.615850e-47 |
Msa1333970 | Msa1412660 | 0.804119 | 2.517595e-49 | -8.615850e-47 |
Msa1335160 | Msa1412660 | 0.803181 | 3.941121e-49 | -8.615850e-47 |
Msa0365860 | Msa1412660 | 0.800051 | 1.727419e-48 | -8.615850e-47 |
Msa0370160 | Msa1412660 | -0.805109 | 1.564039e-49 | -8.615850e-47 |
Msa0372810 | Msa1412660 | 0.800314 | 1.527236e-48 | -8.615850e-47 |
Msa0378970 | Msa1412660 | 0.815424 | 9.311724e-52 | -8.615850e-47 |
Msa0384670 | Msa1412660 | 0.841434 | 4.762254e-58 | -8.615850e-47 |
Msa0384880 | Msa1412660 | 0.800186 | 1.621901e-48 | -8.615850e-47 |
Msa0419720 | Msa1412660 | 0.837911 | 3.930069e-57 | -8.615850e-47 |
Msa0434570 | Msa1412660 | 0.815722 | 7.990110e-52 | -8.615850e-47 |
Msa0434770 | Msa1412660 | 0.816224 | 6.175367e-52 | -8.615850e-47 |
Msa0436200 | Msa1412660 | 0.822096 | 2.843323e-53 | -8.615850e-47 |
Msa0474700 | Msa1412660 | 0.809629 | 1.721781e-50 | -8.615850e-47 |
Msa0478580 | Msa1412660 | 0.815657 | 8.263533e-52 | -8.615850e-47 |
Msa0481970 | Msa1412660 | 0.805590 | 1.240370e-49 | -8.615850e-47 |
Msa0981430 | Msa1412660 | 0.809347 | 1.979586e-50 | -8.615850e-47 |
Msa1025940 | Msa1412660 | 0.804687 | 1.916756e-49 | -8.615850e-47 |
Msa1027250 | Msa1412660 | 0.810274 | 1.250404e-50 | -8.615850e-47 |
Msa1040840 | Msa1412660 | 0.802045 | 6.758270e-49 | -8.615850e-47 |
Msa1070390 | Msa1412660 | 0.815825 | 7.581182e-52 | -8.615850e-47 |
Msa1076560 | Msa1412660 | 0.807317 | 5.361306e-50 | -8.615850e-47 |
Msa1083880 | Msa1412660 | 0.804522 | 2.075012e-49 | -8.615850e-47 |
Msa1089450 | Msa1412660 | 0.800809 | 1.210689e-48 | -8.615850e-47 |
Msa0241830 | Msa1412660 | 0.831981 | 1.226319e-55 | -8.615850e-47 |
Msa0249580 | Msa1412660 | 0.805264 | 1.452075e-49 | -8.615850e-47 |
Msa0262480 | Msa1412660 | 0.817263 | 3.611116e-52 | -8.615850e-47 |
Msa0275360 | Msa1412660 | 0.809982 | 1.445297e-50 | -8.615850e-47 |
Msa0296250 | Msa1412660 | 0.806328 | 8.677733e-50 | -8.615850e-47 |
Msa0300350 | Msa1412660 | 0.807175 | 5.748005e-50 | -8.615850e-47 |
Msa0322900 | Msa1412660 | 0.827702 | 1.351836e-54 | -8.615850e-47 |
Msa0341690 | Msa1412660 | 0.802634 | 5.112293e-49 | -8.615850e-47 |
Msa0343190 | Msa1412660 | 0.810963 | 8.877142e-51 | -8.615850e-47 |
Msa1123350 | Msa1412660 | 0.807798 | 4.237967e-50 | -8.615850e-47 |
Msa1127540 | Msa1412660 | 0.808519 | 2.976702e-50 | -8.615850e-47 |
Msa1127590 | Msa1412660 | 0.831892 | 1.290202e-55 | -8.615850e-47 |
Msa1145240 | Msa1412660 | 0.815737 | 7.931522e-52 | -8.615850e-47 |
Msa1158230 | Msa1412660 | 0.819152 | 1.349484e-52 | -8.615850e-47 |
Msa1165490 | Msa1412660 | 0.801043 | 1.084366e-48 | -8.615850e-47 |
Msa1165780 | Msa1412660 | 0.816309 | 5.909736e-52 | -8.615850e-47 |
Msa1166870 | Msa1412660 | 0.800076 | 1.707476e-48 | -8.615850e-47 |
Msa1173900 | Msa1412660 | 0.813837 | 2.090615e-51 | -8.615850e-47 |
Msa1179980 | Msa1412660 | 0.800319 | 1.523977e-48 | -8.615850e-47 |
Msa1201830 | Msa1412660 | 0.811130 | 8.164507e-51 | -8.615850e-47 |
Msa1202580 | Msa1412660 | 0.837527 | 4.932047e-57 | -8.615850e-47 |
Msa1206310 | Msa1412660 | 0.807513 | 4.873678e-50 | -8.615850e-47 |
Msa1206650 | Msa1412660 | 0.810618 | 1.054092e-50 | -8.615850e-47 |
Msa1223330 | Msa1412660 | 0.804948 | 1.690673e-49 | -8.615850e-47 |
Msa0484290 | Msa1412660 | 0.802801 | 4.721075e-49 | -8.615850e-47 |
Msa0484740 | Msa1412660 | 0.804415 | 2.184543e-49 | -8.615850e-47 |
Msa0511770 | Msa1412660 | 0.837264 | 5.761065e-57 | -8.615850e-47 |
Msa0513260 | Msa1412660 | 0.919462 | 4.370120e-87 | -8.615850e-47 |
Msa0517640 | Msa1412660 | 0.809552 | 1.788803e-50 | -8.615850e-47 |
Msa0518030 | Msa1412660 | 0.831430 | 1.676582e-55 | -8.615850e-47 |
Msa0524590 | Msa1412660 | 0.809002 | 2.346761e-50 | -8.615850e-47 |
Msa0527020 | Msa1412660 | 0.813835 | 2.092841e-51 | -8.615850e-47 |
Msa0531250 | Msa1412660 | 0.818477 | 1.921126e-52 | -8.615850e-47 |
Msa0547990 | Msa1412660 | 0.853298 | 2.621906e-61 | -8.615850e-47 |
Msa0550540 | Msa1412660 | 0.809540 | 1.799540e-50 | -8.615850e-47 |
Msa0550570 | Msa1412660 | 0.810122 | 1.348592e-50 | -8.615850e-47 |
Msa0556010 | Msa1412660 | 0.803186 | 3.931340e-49 | -8.615850e-47 |
Msa0583500 | Msa1412660 | 0.815106 | 1.095430e-51 | -8.615850e-47 |
Msa0586850 | Msa1412660 | 0.804762 | 1.848478e-49 | -8.615850e-47 |
Msa0588090 | Msa1412660 | 0.802341 | 5.874098e-49 | -8.615850e-47 |
Msa0593700 | Msa1412660 | 0.815662 | 8.239787e-52 | -8.615850e-47 |
Msa0849440 | Msa1412660 | 0.802799 | 4.726093e-49 | -8.615850e-47 |
Msa0850150 | Msa1412660 | 0.821514 | 3.877696e-53 | -8.615850e-47 |
Msa0869010 | Msa1412660 | 0.812605 | 3.898423e-51 | -8.615850e-47 |
Msa0879850 | Msa1412660 | 0.805035 | 1.621042e-49 | -8.615850e-47 |
Msa0888940 | Msa1412660 | 0.801370 | 9.298377e-49 | -8.615850e-47 |
Msa0892640 | Msa1412660 | 0.809008 | 2.339984e-50 | -8.615850e-47 |
Msa0901110 | Msa1412660 | 0.822116 | 2.813581e-53 | -8.615850e-47 |
Msa0903780 | Msa1412660 | 0.804420 | 2.179159e-49 | -8.615850e-47 |
Msa0905990 | Msa1412660 | 0.815506 | 8.929345e-52 | -8.615850e-47 |
Msa0944200 | Msa1412660 | 0.806275 | 8.902906e-50 | -8.615850e-47 |
Msa0944610 | Msa1412660 | 0.816573 | 5.157303e-52 | -8.615850e-47 |
Msa0947530 | Msa1412660 | -0.807887 | 4.057967e-50 | -8.615850e-47 |
Msa0973320 | Msa1412660 | 0.803857 | 2.853183e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1412660 | MtrunA17_Chr1g0193561 | 98.540 | 137 | 2 | 0 | 1 | 137 | 1 | 137 | 2.48e-94 | 268 |
Msa1412660 | MtrunA17_Chr4g0066341 | 97.810 | 137 | 2 | 1 | 1 | 137 | 1 | 136 | 1.35e-91 | 261 |
Msa1412660 | MtrunA17_Chr1g0193621 | 91.489 | 141 | 7 | 2 | 1 | 137 | 1 | 140 | 1.32e-86 | 248 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1412660 | AT5G03050.2 | 58.730 | 126 | 47 | 2 | 10 | 132 | 11 | 134 | 1.49e-42 | 137 |
Msa1412660 | AT5G03050.1 | 58.730 | 126 | 47 | 2 | 10 | 132 | 11 | 134 | 1.49e-42 | 137 |
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGAATACTTGGGCTGTTT+TGG | 0.199624 | tig0023943:+10026 | Msa1412660:three_prime_UTR |
AATATCCAATTCATTTCTAT+TGG | 0.230794 | tig0023943:+10055 | Msa1412660:three_prime_UTR |
ATCAGGGAAAACAATGTTTA+AGG | 0.261813 | tig0023943:+9681 | Msa1412660:CDS |
ATTCAAAATTCATTCAGATT+TGG | 0.295741 | tig0023943:+7607 | Msa1412660:five_prime_UTR |
TGCATAACTCTTGGAATACT+TGG | 0.322190 | tig0023943:+10016 | Msa1412660:three_prime_UTR |
CCACGTTTGGTTAATCTTGT+TGG | 0.333278 | tig0023943:+10139 | Msa1412660:three_prime_UTR |
GTATCTGAGCTCTTGGAATC+AGG | 0.345471 | tig0023943:+9664 | Msa1412660:CDS |
ATATCCAATTCATTTCTATT+GGG | 0.345862 | tig0023943:+10056 | Msa1412660:three_prime_UTR |
CCAAGTTGGGTCTGAAGAAA+TGG | 0.369614 | tig0023943:+9491 | Msa1412660:CDS |
ACAGCCCAATAGAAATGAAT+TGG | 0.384691 | tig0023943:-10060 | None:intergenic |
AGCATTAGCTTCCTCATTTG+AGG | 0.397998 | tig0023943:-9911 | None:intergenic |
TAACCAATGTCAGCTCAAAA+AGG | 0.399910 | tig0023943:+8648 | Msa1412660:exon |
GGTTAATCTTGTTGGAGGTA+TGG | 0.415303 | tig0023943:+10147 | Msa1412660:three_prime_UTR |
TATTCATGAGTCACCACGTT+TGG | 0.429549 | tig0023943:+10126 | Msa1412660:three_prime_UTR |
CTTGTAGGTATCTGAGCTCT+TGG | 0.437315 | tig0023943:+9657 | Msa1412660:intron |
CCATTTCTTCAGACCCAACT+TGG | 0.441813 | tig0023943:-9491 | None:intergenic |
CTAGGTATATGCATAACTCT+TGG | 0.455507 | tig0023943:+10007 | Msa1412660:three_prime_UTR |
CTGATTGTTGGAGTCAGAGA+AGG | 0.467815 | tig0023943:-7669 | None:intergenic |
AAGCAGGATTCACAAGGAAC+AGG | 0.472958 | tig0023943:+9843 | Msa1412660:intron |
CTTCAGAGAGTGGAGCTTCA+AGG | 0.486563 | tig0023943:+9275 | Msa1412660:intron |
CAACAATCAGAAAACCTAAC+CGG | 0.491910 | tig0023943:+7682 | Msa1412660:five_prime_UTR |
GGTTTGAGACTAACCAAGTT+GGG | 0.494830 | tig0023943:+9478 | Msa1412660:CDS |
TATCTGAGCTCTTGGAATCA+GGG | 0.503680 | tig0023943:+9665 | Msa1412660:CDS |
CGTTTGGTTAATCTTGTTGG+AGG | 0.523553 | tig0023943:+10142 | Msa1412660:three_prime_UTR |
TCAAGGAAACGTATGAAACC+TGG | 0.524964 | tig0023943:+9292 | Msa1412660:CDS |
ATCGCAGATTGTCCTTGTAC+AGG | 0.525946 | tig0023943:+9449 | Msa1412660:CDS |
CAAACCCTTCCTCCTGTACA+AGG | 0.529759 | tig0023943:-9461 | None:intergenic |
ATTGTCCTTGTACAGGAGGA+AGG | 0.538219 | tig0023943:+9456 | Msa1412660:CDS |
TTGTCCTTGTACAGGAGGAA+GGG | 0.558464 | tig0023943:+9457 | Msa1412660:CDS |
TTAAAGAATTCAATAAACAT+TGG | 0.560206 | tig0023943:-10233 | None:intergenic |
CAAGGAAACGTATGAAACCT+GGG | 0.567520 | tig0023943:+9293 | Msa1412660:CDS |
AGTTGCCTCATGTCATGTCT+AGG | 0.572968 | tig0023943:+9989 | Msa1412660:three_prime_UTR |
TGATTGTTGGAGTCAGAGAA+GGG | 0.577575 | tig0023943:-7668 | None:intergenic |
GCATAACTCTTGGAATACTT+GGG | 0.586646 | tig0023943:+10017 | Msa1412660:three_prime_UTR |
TCAAATAAGCAGGATTCACA+AGG | 0.592512 | tig0023943:+9837 | Msa1412660:intron |
GGGCTGGCATTTCAGAAACA+AGG | 0.596580 | tig0023943:+10210 | Msa1412660:three_prime_UTR |
GGGTTTGAGACTAACCAAGT+TGG | 0.597415 | tig0023943:+9477 | Msa1412660:CDS |
TGCACTTGATGCCTCAAATG+AGG | 0.607261 | tig0023943:+9900 | Msa1412660:CDS |
GCAGATTGTCCTTGTACAGG+AGG | 0.643938 | tig0023943:+9452 | Msa1412660:CDS |
CCAACAAGATTAACCAAACG+TGG | 0.656398 | tig0023943:-10139 | None:intergenic |
AAGGAAACGTATGAAACCTG+GGG | 0.689052 | tig0023943:+9294 | Msa1412660:CDS |
ATATACCTAGACATGACATG+AGG | 0.734630 | tig0023943:-9994 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCAATATCTGATTAATTTA+TGG | + | tig0023943:7764-7783 | Msa1412660:intron | 15.0% |
!! | ATTCATCAATTAAACAAAAA+CGG | - | tig0023943:8070-8089 | None:intergenic | 15.0% |
!!! | TTTTAGATTTTGAGTATTTT+TGG | + | tig0023943:8124-8143 | Msa1412660:intron | 15.0% |
!! | AAGTTTGAATTATAATTTCT+AGG | - | tig0023943:8610-8629 | None:intergenic | 15.0% |
!! | TTAAAGAATTCAATAAACAT+TGG | - | tig0023943:10236-10255 | None:intergenic | 15.0% |
!! | ATTCAAAATTCATTCAGATT+TGG | + | tig0023943:7607-7626 | Msa1412660:five_prime_UTR | 20.0% |
!! | TTCATCAATTAAACAAAAAC+GGG | - | tig0023943:8069-8088 | None:intergenic | 20.0% |
!! | CAAATAAGTCAATATAAACA+GGG | - | tig0023943:8245-8264 | None:intergenic | 20.0% |
!! | TCAAATAAGTCAATATAAAC+AGG | - | tig0023943:8246-8265 | None:intergenic | 20.0% |
!! | CAAATTGAAAAACTAAAGTA+CGG | + | tig0023943:8880-8899 | Msa1412660:intron | 20.0% |
!! | AAATTGAAAAACTAAAGTAC+GGG | + | tig0023943:8881-8900 | Msa1412660:intron | 20.0% |
!! | ATGCTATTAATTCTCATAAA+AGG | + | tig0023943:9001-9020 | Msa1412660:intron | 20.0% |
!! | TGCTATTAATTCTCATAAAA+GGG | + | tig0023943:9002-9021 | Msa1412660:intron | 20.0% |
!!! | TTGTTTTTCTCAAAAAAAAG+AGG | + | tig0023943:9026-9045 | Msa1412660:intron | 20.0% |
!!! | AGGTTTTTTTTTTAATGGTT+GGG | - | tig0023943:9159-9178 | None:intergenic | 20.0% |
!!! | ATGTTTGAAATGTTTAATTG+TGG | + | tig0023943:9630-9649 | Msa1412660:intron | 20.0% |
!! | TTTAAACATTGAATGTTCAA+TGG | - | tig0023943:9757-9776 | None:intergenic | 20.0% |
!!! | TGTTAGTTTTTGACTTTTTA+TGG | + | tig0023943:9797-9816 | Msa1412660:intron | 20.0% |
!! | AATATCCAATTCATTTCTAT+TGG | + | tig0023943:10055-10074 | Msa1412660:three_prime_UTR | 20.0% |
!! | ATATCCAATTCATTTCTATT+GGG | + | tig0023943:10056-10075 | Msa1412660:three_prime_UTR | 20.0% |
! | TATGATATAAGCATTCTGTT+TGG | + | tig0023943:7861-7880 | Msa1412660:intron | 25.0% |
!! | GATGAATTTTCTACATGTTT+TGG | + | tig0023943:8083-8102 | Msa1412660:intron | 25.0% |
! | AATTCACTTCAAACTTATAC+TGG | - | tig0023943:8208-8227 | None:intergenic | 25.0% |
! | AAGTTATTATGAAAGTAAGC+TGG | - | tig0023943:8350-8369 | None:intergenic | 25.0% |
! | CAAATAAGCAATTCCAAATA+GGG | - | tig0023943:8412-8431 | None:intergenic | 25.0% |
! | TCAAATAAGCAATTCCAAAT+AGG | - | tig0023943:8413-8432 | None:intergenic | 25.0% |
!!! | CGTACTTTAGTTTTTCAATT+TGG | - | tig0023943:8882-8901 | None:intergenic | 25.0% |
! | CTTAATAACTATGCATGAAT+AGG | + | tig0023943:8910-8929 | Msa1412660:intron | 25.0% |
!!! | TTTTTTTTAATGGTTGGGTA+CGG | - | tig0023943:9154-9173 | None:intergenic | 25.0% |
!!! | CAGGTTTTTTTTTTAATGGT+TGG | - | tig0023943:9160-9179 | None:intergenic | 25.0% |
! | CAACCATTAAAAAAAAAACC+TGG | + | tig0023943:9158-9177 | Msa1412660:intron | 25.0% |
!! | CTTTTCTTTTCACAATAAAC+AGG | + | tig0023943:9395-9414 | Msa1412660:intron | 25.0% |
! | TTTAATTGTGGATTTCTTGT+AGG | + | tig0023943:9642-9661 | Msa1412660:intron | 25.0% |
!!! | CTTTTAACTTTCAAATAAGC+AGG | + | tig0023943:9827-9846 | Msa1412660:intron | 25.0% |
!!! | GCGCATTTCAAATTTTGATT+GGG | + | tig0023943:7569-7588 | Msa1412660:five_prime_UTR | 30.0% |
!!! | TTTCGATTTGGTTTTTGCAT+TGG | + | tig0023943:7884-7903 | Msa1412660:intron | 30.0% |
! | GATTCGAATCTTCAGATTTT+TGG | + | tig0023943:8033-8052 | Msa1412660:intron | 30.0% |
! | CTAACATAACTTTTGTGAGA+CGG | + | tig0023943:8275-8294 | Msa1412660:intron | 30.0% |
CTATAAGCTGCAAATTTAAG+TGG | + | tig0023943:8570-8589 | Msa1412660:intron | 30.0% | |
!!! | CAAACTTGTTTTATACCTGT+AGG | + | tig0023943:8623-8642 | Msa1412660:intron | 30.0% |
CATTTCTCAAAACAAAGGTA+CGG | + | tig0023943:8752-8771 | Msa1412660:intron | 30.0% | |
! | ATTTCTCAAAACAAAGGTAC+GGG | + | tig0023943:8753-8772 | Msa1412660:intron | 30.0% |
!! | TAGTCATTTTACTGAAGATG+AGG | - | tig0023943:8975-8994 | None:intergenic | 30.0% |
!!! | ATCCTCTTTTTTGGAGAAAA+TGG | - | tig0023943:9096-9115 | None:intergenic | 30.0% |
!!! | GCACCAGGTTTTTTTTTTAA+TGG | - | tig0023943:9164-9183 | None:intergenic | 30.0% |
ATGACGAGAAAAATGTTGAA+AGG | - | tig0023943:9335-9354 | None:intergenic | 30.0% | |
! | AGATTGAGAATTTTACTCAG+AGG | + | tig0023943:9541-9560 | Msa1412660:CDS | 30.0% |
! | GATTGAGAATTTTACTCAGA+GGG | + | tig0023943:9542-9561 | Msa1412660:CDS | 30.0% |
ATCAGGGAAAACAATGTTTA+AGG | + | tig0023943:9681-9700 | Msa1412660:CDS | 30.0% | |
!!! | ATCTGTAGCATTTTAGTTTG+AGG | + | tig0023943:10189-10208 | Msa1412660:three_prime_UTR | 30.0% |
!!! | TCTGTAGCATTTTAGTTTGA+GGG | + | tig0023943:10190-10209 | Msa1412660:three_prime_UTR | 30.0% |
!! | CGCGCATTTCAAATTTTGAT+TGG | + | tig0023943:7568-7587 | Msa1412660:five_prime_UTR | 35.0% |
CAACAATCAGAAAACCTAAC+CGG | + | tig0023943:7682-7701 | Msa1412660:five_prime_UTR | 35.0% | |
!! | TTGAGATGATTTTACCGGTT+AGG | - | tig0023943:7699-7718 | None:intergenic | 35.0% |
! | AACGGTTGAGATGATTTTAC+CGG | - | tig0023943:7704-7723 | None:intergenic | 35.0% |
AGAGCGAAGAAGATGAAAAA+CGG | - | tig0023943:7722-7741 | None:intergenic | 35.0% | |
! | CATTCTGTTTGGTTTCGATT+TGG | + | tig0023943:7872-7891 | Msa1412660:intron | 35.0% |
! | ATAACTTTTGTGAGACGGTT+TGG | + | tig0023943:8280-8299 | Msa1412660:intron | 35.0% |
! | TAACTTTTGTGAGACGGTTT+GGG | + | tig0023943:8281-8300 | Msa1412660:intron | 35.0% |
AAAACAGCTTAGTCCCTATT+TGG | + | tig0023943:8396-8415 | Msa1412660:intron | 35.0% | |
! | GTTTTGTGAGACTATTTGAG+AGG | + | tig0023943:8451-8470 | Msa1412660:intron | 35.0% |
TAACCAATGTCAGCTCAAAA+AGG | + | tig0023943:8648-8667 | Msa1412660:exon | 35.0% | |
TACGGCATTTCTCAAAACAA+AGG | + | tig0023943:8747-8766 | Msa1412660:intron | 35.0% | |
!!! | TGGATGTTTTAGCGTTGTAA+TGG | - | tig0023943:8862-8881 | None:intergenic | 35.0% |
AATAGTGATATCGACACAGT+TGG | - | tig0023943:8947-8966 | None:intergenic | 35.0% | |
! | CATTTTACTGAAGATGAGGA+AGG | - | tig0023943:8971-8990 | None:intergenic | 35.0% |
! | CTCCATTTTCTCCAAAAAAG+AGG | + | tig0023943:9091-9110 | Msa1412660:intron | 35.0% |
!!! | GGTACGTTTATCCTCTTTTT+TGG | - | tig0023943:9105-9124 | None:intergenic | 35.0% |
AAAAAAAACCTGGTGCTTCA+TGG | + | tig0023943:9168-9187 | Msa1412660:intron | 35.0% | |
AAAAAAACCTGGTGCTTCAT+GGG | + | tig0023943:9169-9188 | Msa1412660:intron | 35.0% | |
TCAAATAAGCAGGATTCACA+AGG | + | tig0023943:9837-9856 | Msa1412660:intron | 35.0% | |
! | ACAAGGAACAGGTTGAAAAA+TGG | + | tig0023943:9854-9873 | Msa1412660:CDS | 35.0% |
ATATACCTAGACATGACATG+AGG | - | tig0023943:9997-10016 | None:intergenic | 35.0% | |
CTAGGTATATGCATAACTCT+TGG | + | tig0023943:10007-10026 | Msa1412660:three_prime_UTR | 35.0% | |
TGCATAACTCTTGGAATACT+TGG | + | tig0023943:10016-10035 | Msa1412660:three_prime_UTR | 35.0% | |
GCATAACTCTTGGAATACTT+GGG | + | tig0023943:10017-10036 | Msa1412660:three_prime_UTR | 35.0% | |
ACAGCCCAATAGAAATGAAT+TGG | - | tig0023943:10063-10082 | None:intergenic | 35.0% | |
TGATTGTTGGAGTCAGAGAA+GGG | - | tig0023943:7671-7690 | None:intergenic | 40.0% | |
! | CGGTTAGGTTTTCTGATTGT+TGG | - | tig0023943:7684-7703 | None:intergenic | 40.0% |
! | TTGCTTGCTAATGCTTTGCT+AGG | + | tig0023943:8010-8029 | Msa1412660:intron | 40.0% |
! | TGCTTGCTAATGCTTTGCTA+GGG | + | tig0023943:8011-8030 | Msa1412660:intron | 40.0% |
!! | CTTCCTTTTTGAGCTGACAT+TGG | - | tig0023943:8654-8673 | None:intergenic | 40.0% |
CAAAAAAAAGAGGATGTGCG+TGG | + | tig0023943:9036-9055 | Msa1412660:intron | 40.0% | |
! | TTTTAATGGTTGGGTACGGA+CGG | - | tig0023943:9150-9169 | None:intergenic | 40.0% |
TACGGGTACGTTTAGCAAAA+CGG | + | tig0023943:9242-9261 | Msa1412660:intron | 40.0% | |
TCAAGGAAACGTATGAAACC+TGG | + | tig0023943:9292-9311 | Msa1412660:CDS | 40.0% | |
CAAGGAAACGTATGAAACCT+GGG | + | tig0023943:9293-9312 | Msa1412660:CDS | 40.0% | |
AAGGAAACGTATGAAACCTG+GGG | + | tig0023943:9294-9313 | Msa1412660:CDS | 40.0% | |
GCGAAAATAACAATTACCCC+AGG | - | tig0023943:9313-9332 | None:intergenic | 40.0% | |
! | GGTTTGAGACTAACCAAGTT+GGG | + | tig0023943:9478-9497 | Msa1412660:CDS | 40.0% |
TATCTGAGCTCTTGGAATCA+GGG | + | tig0023943:9665-9684 | Msa1412660:CDS | 40.0% | |
! | AGCATTAGCTTCCTCATTTG+AGG | - | tig0023943:9914-9933 | None:intergenic | 40.0% |
! | TTGGAATACTTGGGCTGTTT+TGG | + | tig0023943:10026-10045 | Msa1412660:three_prime_UTR | 40.0% |
TATTCATGAGTCACCACGTT+TGG | + | tig0023943:10126-10145 | Msa1412660:three_prime_UTR | 40.0% | |
CCAACAAGATTAACCAAACG+TGG | - | tig0023943:10142-10161 | None:intergenic | 40.0% | |
CCACGTTTGGTTAATCTTGT+TGG | + | tig0023943:10139-10158 | Msa1412660:three_prime_UTR | 40.0% | |
CGTTTGGTTAATCTTGTTGG+AGG | + | tig0023943:10142-10161 | Msa1412660:three_prime_UTR | 40.0% | |
GGTTAATCTTGTTGGAGGTA+TGG | + | tig0023943:10147-10166 | Msa1412660:three_prime_UTR | 40.0% | |
!!! | TAGCATTTTAGTTTGAGGGC+TGG | + | tig0023943:10194-10213 | Msa1412660:three_prime_UTR | 40.0% |
CTGATTGTTGGAGTCAGAGA+AGG | - | tig0023943:7672-7691 | None:intergenic | 45.0% | |
! | CTGACATTGGTTAAGCCTAC+AGG | - | tig0023943:8641-8660 | None:intergenic | 45.0% |
GTCAGCTCAAAAAGGAAGCA+TGG | + | tig0023943:8656-8675 | Msa1412660:CDS | 45.0% | |
! | CAAAAAGGAAGCATGGACAG+TGG | + | tig0023943:8663-8682 | Msa1412660:CDS | 45.0% |
!! | GTACTGCAGTGGTACTGATT+GGG | - | tig0023943:9126-9145 | None:intergenic | 45.0% |
TTTAATGGTTGGGTACGGAC+GGG | - | tig0023943:9149-9168 | None:intergenic | 45.0% | |
TTTGCTAAACGTACCCGTAC+CGG | - | tig0023943:9241-9260 | None:intergenic | 45.0% | |
ATCGCAGATTGTCCTTGTAC+AGG | + | tig0023943:9449-9468 | Msa1412660:CDS | 45.0% | |
ATTGTCCTTGTACAGGAGGA+AGG | + | tig0023943:9456-9475 | Msa1412660:CDS | 45.0% | |
TTGTCCTTGTACAGGAGGAA+GGG | + | tig0023943:9457-9476 | Msa1412660:CDS | 45.0% | |
! | GGGTTTGAGACTAACCAAGT+TGG | + | tig0023943:9477-9496 | Msa1412660:CDS | 45.0% |
CCATTTCTTCAGACCCAACT+TGG | - | tig0023943:9494-9513 | None:intergenic | 45.0% | |
! | CCAAGTTGGGTCTGAAGAAA+TGG | + | tig0023943:9491-9510 | Msa1412660:CDS | 45.0% |
CTTGTAGGTATCTGAGCTCT+TGG | + | tig0023943:9657-9676 | Msa1412660:intron | 45.0% | |
GTATCTGAGCTCTTGGAATC+AGG | + | tig0023943:9664-9683 | Msa1412660:CDS | 45.0% | |
AAGCAGGATTCACAAGGAAC+AGG | + | tig0023943:9843-9862 | Msa1412660:intron | 45.0% | |
! | GGAACAGGTTGAAAAATGGC+AGG | + | tig0023943:9858-9877 | Msa1412660:CDS | 45.0% |
TGCACTTGATGCCTCAAATG+AGG | + | tig0023943:9900-9919 | Msa1412660:CDS | 45.0% | |
AGTTGCCTCATGTCATGTCT+AGG | + | tig0023943:9989-10008 | Msa1412660:three_prime_UTR | 45.0% | |
!! | GGTACTGCAGTGGTACTGAT+TGG | - | tig0023943:9127-9146 | None:intergenic | 50.0% |
TTAATGGTTGGGTACGGACG+GGG | - | tig0023943:9148-9167 | None:intergenic | 50.0% | |
TTGCTAAACGTACCCGTACC+GGG | - | tig0023943:9240-9259 | None:intergenic | 50.0% | |
!! | AAGCTCCACTCTCTGAAGCA+CGG | - | tig0023943:9273-9292 | None:intergenic | 50.0% |
CTTCAGAGAGTGGAGCTTCA+AGG | + | tig0023943:9275-9294 | Msa1412660:intron | 50.0% | |
GCAGATTGTCCTTGTACAGG+AGG | + | tig0023943:9452-9471 | Msa1412660:CDS | 50.0% | |
CAAACCCTTCCTCCTGTACA+AGG | - | tig0023943:9464-9483 | None:intergenic | 50.0% | |
! | GGGCTGGCATTTCAGAAACA+AGG | + | tig0023943:10210-10229 | Msa1412660:three_prime_UTR | 50.0% |
CAGTGGAGCTCTGTGTTGCA+CGG | + | tig0023943:8680-8699 | Msa1412660:intron | 55.0% | |
AGTGGAGCTCTGTGTTGCAC+GGG | + | tig0023943:8681-8700 | Msa1412660:intron | 55.0% | |
AGTACCCGTGCTTCAGAGAG+TGG | + | tig0023943:9265-9284 | Msa1412660:intron | 55.0% | |
!! | AGCTCCACTCTCTGAAGCAC+GGG | - | tig0023943:9272-9291 | None:intergenic | 55.0% |
AGCTCTGTGTTGCACGGGTG+CGG | + | tig0023943:8686-8705 | Msa1412660:intron | 60.0% | |
! | GTACGCACCCATGAAGCACC+AGG | - | tig0023943:9179-9198 | None:intergenic | 60.0% |
!! | CGCGGGTACTGGTACACGTA+CGG | - | tig0023943:9212-9231 | None:intergenic | 60.0% |
GCTCTGTGTTGCACGGGTGC+GGG | + | tig0023943:8687-8706 | Msa1412660:intron | 65.0% | |
GTGTTGCACGGGTGCGGGTA+CGG | + | tig0023943:8692-8711 | Msa1412660:intron | 65.0% | |
TGCGGGTACGGTACCCGGTA+CGG | + | tig0023943:8704-8723 | Msa1412660:intron | 65.0% | |
TACGGTACCCGGTACGGGTG+CGG | + | tig0023943:8710-8729 | Msa1412660:intron | 65.0% | |
!! | GTACGGACGGGGTACTGCAG+TGG | - | tig0023943:9137-9156 | None:intergenic | 65.0% |
ACCAGTACCCGCGCAGTACC+CGG | + | tig0023943:9219-9238 | Msa1412660:intron | 65.0% | |
TACCCGCGCAGTACCCGGTA+CGG | + | tig0023943:9224-9243 | Msa1412660:intron | 65.0% | |
! | TACCCGTACCGGGTACTGCG+CGG | - | tig0023943:9230-9249 | None:intergenic | 65.0% |
ACGGGTGCGGGTACGGTACC+CGG | + | tig0023943:8699-8718 | Msa1412660:intron | 70.0% | |
GCGGGTACGGTACCCGGTAC+GGG | + | tig0023943:8705-8724 | Msa1412660:intron | 70.0% | |
ACGGTACCCGGTACGGGTGC+GGG | + | tig0023943:8711-8730 | Msa1412660:intron | 70.0% | |
TACGGGTGCGGGTGCGGGTA+CGG | + | tig0023943:8722-8741 | Msa1412660:intron | 70.0% | |
GCGGGTGCGGGTACGGGATA+CGG | + | tig0023943:8729-8748 | Msa1412660:intron | 70.0% | |
! | ACCGGGTACTGCGCGGGTAC+TGG | - | tig0023943:9223-9242 | None:intergenic | 70.0% |
ACCCGCGCAGTACCCGGTAC+GGG | + | tig0023943:9225-9244 | Msa1412660:intron | 70.0% | |
! | ACCCGTACCGGGTACTGCGC+GGG | - | tig0023943:9229-9248 | None:intergenic | 70.0% |
ACCCGGTACGGGTGCGGGTG+CGG | + | tig0023943:8716-8735 | Msa1412660:intron | 75.0% | |
ACCCGCACCCGCACCCGTAC+CGG | - | tig0023943:8721-8740 | None:intergenic | 75.0% | |
ACGGGTGCGGGTGCGGGTAC+GGG | + | tig0023943:8723-8742 | Msa1412660:intron | 75.0% | |
! | CCCGCACCCGCACCCGTACC+GGG | - | tig0023943:8720-8739 | None:intergenic | 80.0% |
! | CCCGGTACGGGTGCGGGTGC+GGG | + | tig0023943:8717-8736 | Msa1412660:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0023943 | gene | 7559 | 10258 | 7559 | ID=Msa1412660;Name=Msa1412660 |
tig0023943 | mRNA | 7559 | 10258 | 7559 | ID=Msa1412660-mRNA-1;Parent=Msa1412660;Name=Msa1412660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=154|1|1|1|0.6|0.5|6|277|137 |
tig0023943 | exon | 7559 | 7703 | 7559 | ID=Msa1412660-mRNA-1:exon:20729;Parent=Msa1412660-mRNA-1 |
tig0023943 | exon | 8645 | 8682 | 8645 | ID=Msa1412660-mRNA-1:exon:20730;Parent=Msa1412660-mRNA-1 |
tig0023943 | exon | 9285 | 9315 | 9285 | ID=Msa1412660-mRNA-1:exon:20731;Parent=Msa1412660-mRNA-1 |
tig0023943 | exon | 9417 | 9563 | 9417 | ID=Msa1412660-mRNA-1:exon:20732;Parent=Msa1412660-mRNA-1 |
tig0023943 | exon | 9664 | 9737 | 9664 | ID=Msa1412660-mRNA-1:exon:20733;Parent=Msa1412660-mRNA-1 |
tig0023943 | exon | 9849 | 10258 | 9849 | ID=Msa1412660-mRNA-1:exon:20734;Parent=Msa1412660-mRNA-1 |
tig0023943 | five_prime_UTR | 7559 | 7703 | 7559 | ID=Msa1412660-mRNA-1:five_prime_utr;Parent=Msa1412660-mRNA-1 |
tig0023943 | five_prime_UTR | 8645 | 8653 | 8645 | ID=Msa1412660-mRNA-1:five_prime_utr;Parent=Msa1412660-mRNA-1 |
tig0023943 | CDS | 8654 | 8682 | 8654 | ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1 |
tig0023943 | CDS | 9285 | 9315 | 9285 | ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1 |
tig0023943 | CDS | 9417 | 9563 | 9417 | ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1 |
tig0023943 | CDS | 9664 | 9737 | 9664 | ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1 |
tig0023943 | CDS | 9849 | 9981 | 9849 | ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1 |
tig0023943 | three_prime_UTR | 9982 | 10258 | 9982 | ID=Msa1412660-mRNA-1:three_prime_utr;Parent=Msa1412660-mRNA-1 |
Gene Sequence |
Protein sequence |