AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412660 MtrunA17_Chr1g0193561 98.540 137 2 0 1 137 1 137 2.48e-94 268
Msa1412660 MtrunA17_Chr4g0066341 97.810 137 2 1 1 137 1 136 1.35e-91 261
Msa1412660 MtrunA17_Chr1g0193621 91.489 141 7 2 1 137 1 140 1.32e-86 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412660 AT5G03050.2 58.730 126 47 2 10 132 11 134 1.49e-42 137
Msa1412660 AT5G03050.1 58.730 126 47 2 10 132 11 134 1.49e-42 137

Find 42 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATACTTGGGCTGTTT+TGG 0.199624 tig0023943:+10026 Msa1412660:three_prime_UTR
AATATCCAATTCATTTCTAT+TGG 0.230794 tig0023943:+10055 Msa1412660:three_prime_UTR
ATCAGGGAAAACAATGTTTA+AGG 0.261813 tig0023943:+9681 Msa1412660:CDS
ATTCAAAATTCATTCAGATT+TGG 0.295741 tig0023943:+7607 Msa1412660:five_prime_UTR
TGCATAACTCTTGGAATACT+TGG 0.322190 tig0023943:+10016 Msa1412660:three_prime_UTR
CCACGTTTGGTTAATCTTGT+TGG 0.333278 tig0023943:+10139 Msa1412660:three_prime_UTR
GTATCTGAGCTCTTGGAATC+AGG 0.345471 tig0023943:+9664 Msa1412660:CDS
ATATCCAATTCATTTCTATT+GGG 0.345862 tig0023943:+10056 Msa1412660:three_prime_UTR
CCAAGTTGGGTCTGAAGAAA+TGG 0.369614 tig0023943:+9491 Msa1412660:CDS
ACAGCCCAATAGAAATGAAT+TGG 0.384691 tig0023943:-10060 None:intergenic
AGCATTAGCTTCCTCATTTG+AGG 0.397998 tig0023943:-9911 None:intergenic
TAACCAATGTCAGCTCAAAA+AGG 0.399910 tig0023943:+8648 Msa1412660:exon
GGTTAATCTTGTTGGAGGTA+TGG 0.415303 tig0023943:+10147 Msa1412660:three_prime_UTR
TATTCATGAGTCACCACGTT+TGG 0.429549 tig0023943:+10126 Msa1412660:three_prime_UTR
CTTGTAGGTATCTGAGCTCT+TGG 0.437315 tig0023943:+9657 Msa1412660:intron
CCATTTCTTCAGACCCAACT+TGG 0.441813 tig0023943:-9491 None:intergenic
CTAGGTATATGCATAACTCT+TGG 0.455507 tig0023943:+10007 Msa1412660:three_prime_UTR
CTGATTGTTGGAGTCAGAGA+AGG 0.467815 tig0023943:-7669 None:intergenic
AAGCAGGATTCACAAGGAAC+AGG 0.472958 tig0023943:+9843 Msa1412660:intron
CTTCAGAGAGTGGAGCTTCA+AGG 0.486563 tig0023943:+9275 Msa1412660:intron
CAACAATCAGAAAACCTAAC+CGG 0.491910 tig0023943:+7682 Msa1412660:five_prime_UTR
GGTTTGAGACTAACCAAGTT+GGG 0.494830 tig0023943:+9478 Msa1412660:CDS
TATCTGAGCTCTTGGAATCA+GGG 0.503680 tig0023943:+9665 Msa1412660:CDS
CGTTTGGTTAATCTTGTTGG+AGG 0.523553 tig0023943:+10142 Msa1412660:three_prime_UTR
TCAAGGAAACGTATGAAACC+TGG 0.524964 tig0023943:+9292 Msa1412660:CDS
ATCGCAGATTGTCCTTGTAC+AGG 0.525946 tig0023943:+9449 Msa1412660:CDS
CAAACCCTTCCTCCTGTACA+AGG 0.529759 tig0023943:-9461 None:intergenic
ATTGTCCTTGTACAGGAGGA+AGG 0.538219 tig0023943:+9456 Msa1412660:CDS
TTGTCCTTGTACAGGAGGAA+GGG 0.558464 tig0023943:+9457 Msa1412660:CDS
TTAAAGAATTCAATAAACAT+TGG 0.560206 tig0023943:-10233 None:intergenic
CAAGGAAACGTATGAAACCT+GGG 0.567520 tig0023943:+9293 Msa1412660:CDS
AGTTGCCTCATGTCATGTCT+AGG 0.572968 tig0023943:+9989 Msa1412660:three_prime_UTR
TGATTGTTGGAGTCAGAGAA+GGG 0.577575 tig0023943:-7668 None:intergenic
GCATAACTCTTGGAATACTT+GGG 0.586646 tig0023943:+10017 Msa1412660:three_prime_UTR
TCAAATAAGCAGGATTCACA+AGG 0.592512 tig0023943:+9837 Msa1412660:intron
GGGCTGGCATTTCAGAAACA+AGG 0.596580 tig0023943:+10210 Msa1412660:three_prime_UTR
GGGTTTGAGACTAACCAAGT+TGG 0.597415 tig0023943:+9477 Msa1412660:CDS
TGCACTTGATGCCTCAAATG+AGG 0.607261 tig0023943:+9900 Msa1412660:CDS
GCAGATTGTCCTTGTACAGG+AGG 0.643938 tig0023943:+9452 Msa1412660:CDS
CCAACAAGATTAACCAAACG+TGG 0.656398 tig0023943:-10139 None:intergenic
AAGGAAACGTATGAAACCTG+GGG 0.689052 tig0023943:+9294 Msa1412660:CDS
ATATACCTAGACATGACATG+AGG 0.734630 tig0023943:-9994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATATCTGATTAATTTA+TGG + tig0023943:7764-7783 Msa1412660:intron 15.0%
!! ATTCATCAATTAAACAAAAA+CGG - tig0023943:8070-8089 None:intergenic 15.0%
!!! TTTTAGATTTTGAGTATTTT+TGG + tig0023943:8124-8143 Msa1412660:intron 15.0%
!! AAGTTTGAATTATAATTTCT+AGG - tig0023943:8610-8629 None:intergenic 15.0%
!! TTAAAGAATTCAATAAACAT+TGG - tig0023943:10236-10255 None:intergenic 15.0%
!! ATTCAAAATTCATTCAGATT+TGG + tig0023943:7607-7626 Msa1412660:five_prime_UTR 20.0%
!! TTCATCAATTAAACAAAAAC+GGG - tig0023943:8069-8088 None:intergenic 20.0%
!! CAAATAAGTCAATATAAACA+GGG - tig0023943:8245-8264 None:intergenic 20.0%
!! TCAAATAAGTCAATATAAAC+AGG - tig0023943:8246-8265 None:intergenic 20.0%
!! CAAATTGAAAAACTAAAGTA+CGG + tig0023943:8880-8899 Msa1412660:intron 20.0%
!! AAATTGAAAAACTAAAGTAC+GGG + tig0023943:8881-8900 Msa1412660:intron 20.0%
!! ATGCTATTAATTCTCATAAA+AGG + tig0023943:9001-9020 Msa1412660:intron 20.0%
!! TGCTATTAATTCTCATAAAA+GGG + tig0023943:9002-9021 Msa1412660:intron 20.0%
!!! TTGTTTTTCTCAAAAAAAAG+AGG + tig0023943:9026-9045 Msa1412660:intron 20.0%
!!! AGGTTTTTTTTTTAATGGTT+GGG - tig0023943:9159-9178 None:intergenic 20.0%
!!! ATGTTTGAAATGTTTAATTG+TGG + tig0023943:9630-9649 Msa1412660:intron 20.0%
!! TTTAAACATTGAATGTTCAA+TGG - tig0023943:9757-9776 None:intergenic 20.0%
!!! TGTTAGTTTTTGACTTTTTA+TGG + tig0023943:9797-9816 Msa1412660:intron 20.0%
!! AATATCCAATTCATTTCTAT+TGG + tig0023943:10055-10074 Msa1412660:three_prime_UTR 20.0%
!! ATATCCAATTCATTTCTATT+GGG + tig0023943:10056-10075 Msa1412660:three_prime_UTR 20.0%
! TATGATATAAGCATTCTGTT+TGG + tig0023943:7861-7880 Msa1412660:intron 25.0%
!! GATGAATTTTCTACATGTTT+TGG + tig0023943:8083-8102 Msa1412660:intron 25.0%
! AATTCACTTCAAACTTATAC+TGG - tig0023943:8208-8227 None:intergenic 25.0%
! AAGTTATTATGAAAGTAAGC+TGG - tig0023943:8350-8369 None:intergenic 25.0%
! CAAATAAGCAATTCCAAATA+GGG - tig0023943:8412-8431 None:intergenic 25.0%
! TCAAATAAGCAATTCCAAAT+AGG - tig0023943:8413-8432 None:intergenic 25.0%
!!! CGTACTTTAGTTTTTCAATT+TGG - tig0023943:8882-8901 None:intergenic 25.0%
! CTTAATAACTATGCATGAAT+AGG + tig0023943:8910-8929 Msa1412660:intron 25.0%
!!! TTTTTTTTAATGGTTGGGTA+CGG - tig0023943:9154-9173 None:intergenic 25.0%
!!! CAGGTTTTTTTTTTAATGGT+TGG - tig0023943:9160-9179 None:intergenic 25.0%
! CAACCATTAAAAAAAAAACC+TGG + tig0023943:9158-9177 Msa1412660:intron 25.0%
!! CTTTTCTTTTCACAATAAAC+AGG + tig0023943:9395-9414 Msa1412660:intron 25.0%
! TTTAATTGTGGATTTCTTGT+AGG + tig0023943:9642-9661 Msa1412660:intron 25.0%
!!! CTTTTAACTTTCAAATAAGC+AGG + tig0023943:9827-9846 Msa1412660:intron 25.0%
!!! GCGCATTTCAAATTTTGATT+GGG + tig0023943:7569-7588 Msa1412660:five_prime_UTR 30.0%
!!! TTTCGATTTGGTTTTTGCAT+TGG + tig0023943:7884-7903 Msa1412660:intron 30.0%
! GATTCGAATCTTCAGATTTT+TGG + tig0023943:8033-8052 Msa1412660:intron 30.0%
! CTAACATAACTTTTGTGAGA+CGG + tig0023943:8275-8294 Msa1412660:intron 30.0%
CTATAAGCTGCAAATTTAAG+TGG + tig0023943:8570-8589 Msa1412660:intron 30.0%
!!! CAAACTTGTTTTATACCTGT+AGG + tig0023943:8623-8642 Msa1412660:intron 30.0%
CATTTCTCAAAACAAAGGTA+CGG + tig0023943:8752-8771 Msa1412660:intron 30.0%
! ATTTCTCAAAACAAAGGTAC+GGG + tig0023943:8753-8772 Msa1412660:intron 30.0%
!! TAGTCATTTTACTGAAGATG+AGG - tig0023943:8975-8994 None:intergenic 30.0%
!!! ATCCTCTTTTTTGGAGAAAA+TGG - tig0023943:9096-9115 None:intergenic 30.0%
!!! GCACCAGGTTTTTTTTTTAA+TGG - tig0023943:9164-9183 None:intergenic 30.0%
ATGACGAGAAAAATGTTGAA+AGG - tig0023943:9335-9354 None:intergenic 30.0%
! AGATTGAGAATTTTACTCAG+AGG + tig0023943:9541-9560 Msa1412660:CDS 30.0%
! GATTGAGAATTTTACTCAGA+GGG + tig0023943:9542-9561 Msa1412660:CDS 30.0%
ATCAGGGAAAACAATGTTTA+AGG + tig0023943:9681-9700 Msa1412660:CDS 30.0%
!!! ATCTGTAGCATTTTAGTTTG+AGG + tig0023943:10189-10208 Msa1412660:three_prime_UTR 30.0%
!!! TCTGTAGCATTTTAGTTTGA+GGG + tig0023943:10190-10209 Msa1412660:three_prime_UTR 30.0%
!! CGCGCATTTCAAATTTTGAT+TGG + tig0023943:7568-7587 Msa1412660:five_prime_UTR 35.0%
CAACAATCAGAAAACCTAAC+CGG + tig0023943:7682-7701 Msa1412660:five_prime_UTR 35.0%
!! TTGAGATGATTTTACCGGTT+AGG - tig0023943:7699-7718 None:intergenic 35.0%
! AACGGTTGAGATGATTTTAC+CGG - tig0023943:7704-7723 None:intergenic 35.0%
AGAGCGAAGAAGATGAAAAA+CGG - tig0023943:7722-7741 None:intergenic 35.0%
! CATTCTGTTTGGTTTCGATT+TGG + tig0023943:7872-7891 Msa1412660:intron 35.0%
! ATAACTTTTGTGAGACGGTT+TGG + tig0023943:8280-8299 Msa1412660:intron 35.0%
! TAACTTTTGTGAGACGGTTT+GGG + tig0023943:8281-8300 Msa1412660:intron 35.0%
AAAACAGCTTAGTCCCTATT+TGG + tig0023943:8396-8415 Msa1412660:intron 35.0%
! GTTTTGTGAGACTATTTGAG+AGG + tig0023943:8451-8470 Msa1412660:intron 35.0%
TAACCAATGTCAGCTCAAAA+AGG + tig0023943:8648-8667 Msa1412660:exon 35.0%
TACGGCATTTCTCAAAACAA+AGG + tig0023943:8747-8766 Msa1412660:intron 35.0%
!!! TGGATGTTTTAGCGTTGTAA+TGG - tig0023943:8862-8881 None:intergenic 35.0%
AATAGTGATATCGACACAGT+TGG - tig0023943:8947-8966 None:intergenic 35.0%
! CATTTTACTGAAGATGAGGA+AGG - tig0023943:8971-8990 None:intergenic 35.0%
! CTCCATTTTCTCCAAAAAAG+AGG + tig0023943:9091-9110 Msa1412660:intron 35.0%
!!! GGTACGTTTATCCTCTTTTT+TGG - tig0023943:9105-9124 None:intergenic 35.0%
AAAAAAAACCTGGTGCTTCA+TGG + tig0023943:9168-9187 Msa1412660:intron 35.0%
AAAAAAACCTGGTGCTTCAT+GGG + tig0023943:9169-9188 Msa1412660:intron 35.0%
TCAAATAAGCAGGATTCACA+AGG + tig0023943:9837-9856 Msa1412660:intron 35.0%
! ACAAGGAACAGGTTGAAAAA+TGG + tig0023943:9854-9873 Msa1412660:CDS 35.0%
ATATACCTAGACATGACATG+AGG - tig0023943:9997-10016 None:intergenic 35.0%
CTAGGTATATGCATAACTCT+TGG + tig0023943:10007-10026 Msa1412660:three_prime_UTR 35.0%
TGCATAACTCTTGGAATACT+TGG + tig0023943:10016-10035 Msa1412660:three_prime_UTR 35.0%
GCATAACTCTTGGAATACTT+GGG + tig0023943:10017-10036 Msa1412660:three_prime_UTR 35.0%
ACAGCCCAATAGAAATGAAT+TGG - tig0023943:10063-10082 None:intergenic 35.0%
TGATTGTTGGAGTCAGAGAA+GGG - tig0023943:7671-7690 None:intergenic 40.0%
! CGGTTAGGTTTTCTGATTGT+TGG - tig0023943:7684-7703 None:intergenic 40.0%
! TTGCTTGCTAATGCTTTGCT+AGG + tig0023943:8010-8029 Msa1412660:intron 40.0%
! TGCTTGCTAATGCTTTGCTA+GGG + tig0023943:8011-8030 Msa1412660:intron 40.0%
!! CTTCCTTTTTGAGCTGACAT+TGG - tig0023943:8654-8673 None:intergenic 40.0%
CAAAAAAAAGAGGATGTGCG+TGG + tig0023943:9036-9055 Msa1412660:intron 40.0%
! TTTTAATGGTTGGGTACGGA+CGG - tig0023943:9150-9169 None:intergenic 40.0%
TACGGGTACGTTTAGCAAAA+CGG + tig0023943:9242-9261 Msa1412660:intron 40.0%
TCAAGGAAACGTATGAAACC+TGG + tig0023943:9292-9311 Msa1412660:CDS 40.0%
CAAGGAAACGTATGAAACCT+GGG + tig0023943:9293-9312 Msa1412660:CDS 40.0%
AAGGAAACGTATGAAACCTG+GGG + tig0023943:9294-9313 Msa1412660:CDS 40.0%
GCGAAAATAACAATTACCCC+AGG - tig0023943:9313-9332 None:intergenic 40.0%
! GGTTTGAGACTAACCAAGTT+GGG + tig0023943:9478-9497 Msa1412660:CDS 40.0%
TATCTGAGCTCTTGGAATCA+GGG + tig0023943:9665-9684 Msa1412660:CDS 40.0%
! AGCATTAGCTTCCTCATTTG+AGG - tig0023943:9914-9933 None:intergenic 40.0%
! TTGGAATACTTGGGCTGTTT+TGG + tig0023943:10026-10045 Msa1412660:three_prime_UTR 40.0%
TATTCATGAGTCACCACGTT+TGG + tig0023943:10126-10145 Msa1412660:three_prime_UTR 40.0%
CCAACAAGATTAACCAAACG+TGG - tig0023943:10142-10161 None:intergenic 40.0%
CCACGTTTGGTTAATCTTGT+TGG + tig0023943:10139-10158 Msa1412660:three_prime_UTR 40.0%
CGTTTGGTTAATCTTGTTGG+AGG + tig0023943:10142-10161 Msa1412660:three_prime_UTR 40.0%
GGTTAATCTTGTTGGAGGTA+TGG + tig0023943:10147-10166 Msa1412660:three_prime_UTR 40.0%
!!! TAGCATTTTAGTTTGAGGGC+TGG + tig0023943:10194-10213 Msa1412660:three_prime_UTR 40.0%
CTGATTGTTGGAGTCAGAGA+AGG - tig0023943:7672-7691 None:intergenic 45.0%
! CTGACATTGGTTAAGCCTAC+AGG - tig0023943:8641-8660 None:intergenic 45.0%
GTCAGCTCAAAAAGGAAGCA+TGG + tig0023943:8656-8675 Msa1412660:CDS 45.0%
! CAAAAAGGAAGCATGGACAG+TGG + tig0023943:8663-8682 Msa1412660:CDS 45.0%
!! GTACTGCAGTGGTACTGATT+GGG - tig0023943:9126-9145 None:intergenic 45.0%
TTTAATGGTTGGGTACGGAC+GGG - tig0023943:9149-9168 None:intergenic 45.0%
TTTGCTAAACGTACCCGTAC+CGG - tig0023943:9241-9260 None:intergenic 45.0%
ATCGCAGATTGTCCTTGTAC+AGG + tig0023943:9449-9468 Msa1412660:CDS 45.0%
ATTGTCCTTGTACAGGAGGA+AGG + tig0023943:9456-9475 Msa1412660:CDS 45.0%
TTGTCCTTGTACAGGAGGAA+GGG + tig0023943:9457-9476 Msa1412660:CDS 45.0%
! GGGTTTGAGACTAACCAAGT+TGG + tig0023943:9477-9496 Msa1412660:CDS 45.0%
CCATTTCTTCAGACCCAACT+TGG - tig0023943:9494-9513 None:intergenic 45.0%
! CCAAGTTGGGTCTGAAGAAA+TGG + tig0023943:9491-9510 Msa1412660:CDS 45.0%
CTTGTAGGTATCTGAGCTCT+TGG + tig0023943:9657-9676 Msa1412660:intron 45.0%
GTATCTGAGCTCTTGGAATC+AGG + tig0023943:9664-9683 Msa1412660:CDS 45.0%
AAGCAGGATTCACAAGGAAC+AGG + tig0023943:9843-9862 Msa1412660:intron 45.0%
! GGAACAGGTTGAAAAATGGC+AGG + tig0023943:9858-9877 Msa1412660:CDS 45.0%
TGCACTTGATGCCTCAAATG+AGG + tig0023943:9900-9919 Msa1412660:CDS 45.0%
AGTTGCCTCATGTCATGTCT+AGG + tig0023943:9989-10008 Msa1412660:three_prime_UTR 45.0%
!! GGTACTGCAGTGGTACTGAT+TGG - tig0023943:9127-9146 None:intergenic 50.0%
TTAATGGTTGGGTACGGACG+GGG - tig0023943:9148-9167 None:intergenic 50.0%
TTGCTAAACGTACCCGTACC+GGG - tig0023943:9240-9259 None:intergenic 50.0%
!! AAGCTCCACTCTCTGAAGCA+CGG - tig0023943:9273-9292 None:intergenic 50.0%
CTTCAGAGAGTGGAGCTTCA+AGG + tig0023943:9275-9294 Msa1412660:intron 50.0%
GCAGATTGTCCTTGTACAGG+AGG + tig0023943:9452-9471 Msa1412660:CDS 50.0%
CAAACCCTTCCTCCTGTACA+AGG - tig0023943:9464-9483 None:intergenic 50.0%
! GGGCTGGCATTTCAGAAACA+AGG + tig0023943:10210-10229 Msa1412660:three_prime_UTR 50.0%
CAGTGGAGCTCTGTGTTGCA+CGG + tig0023943:8680-8699 Msa1412660:intron 55.0%
AGTGGAGCTCTGTGTTGCAC+GGG + tig0023943:8681-8700 Msa1412660:intron 55.0%
AGTACCCGTGCTTCAGAGAG+TGG + tig0023943:9265-9284 Msa1412660:intron 55.0%
!! AGCTCCACTCTCTGAAGCAC+GGG - tig0023943:9272-9291 None:intergenic 55.0%
AGCTCTGTGTTGCACGGGTG+CGG + tig0023943:8686-8705 Msa1412660:intron 60.0%
! GTACGCACCCATGAAGCACC+AGG - tig0023943:9179-9198 None:intergenic 60.0%
!! CGCGGGTACTGGTACACGTA+CGG - tig0023943:9212-9231 None:intergenic 60.0%
GCTCTGTGTTGCACGGGTGC+GGG + tig0023943:8687-8706 Msa1412660:intron 65.0%
GTGTTGCACGGGTGCGGGTA+CGG + tig0023943:8692-8711 Msa1412660:intron 65.0%
TGCGGGTACGGTACCCGGTA+CGG + tig0023943:8704-8723 Msa1412660:intron 65.0%
TACGGTACCCGGTACGGGTG+CGG + tig0023943:8710-8729 Msa1412660:intron 65.0%
!! GTACGGACGGGGTACTGCAG+TGG - tig0023943:9137-9156 None:intergenic 65.0%
ACCAGTACCCGCGCAGTACC+CGG + tig0023943:9219-9238 Msa1412660:intron 65.0%
TACCCGCGCAGTACCCGGTA+CGG + tig0023943:9224-9243 Msa1412660:intron 65.0%
! TACCCGTACCGGGTACTGCG+CGG - tig0023943:9230-9249 None:intergenic 65.0%
ACGGGTGCGGGTACGGTACC+CGG + tig0023943:8699-8718 Msa1412660:intron 70.0%
GCGGGTACGGTACCCGGTAC+GGG + tig0023943:8705-8724 Msa1412660:intron 70.0%
ACGGTACCCGGTACGGGTGC+GGG + tig0023943:8711-8730 Msa1412660:intron 70.0%
TACGGGTGCGGGTGCGGGTA+CGG + tig0023943:8722-8741 Msa1412660:intron 70.0%
GCGGGTGCGGGTACGGGATA+CGG + tig0023943:8729-8748 Msa1412660:intron 70.0%
! ACCGGGTACTGCGCGGGTAC+TGG - tig0023943:9223-9242 None:intergenic 70.0%
ACCCGCGCAGTACCCGGTAC+GGG + tig0023943:9225-9244 Msa1412660:intron 70.0%
! ACCCGTACCGGGTACTGCGC+GGG - tig0023943:9229-9248 None:intergenic 70.0%
ACCCGGTACGGGTGCGGGTG+CGG + tig0023943:8716-8735 Msa1412660:intron 75.0%
ACCCGCACCCGCACCCGTAC+CGG - tig0023943:8721-8740 None:intergenic 75.0%
ACGGGTGCGGGTGCGGGTAC+GGG + tig0023943:8723-8742 Msa1412660:intron 75.0%
! CCCGCACCCGCACCCGTACC+GGG - tig0023943:8720-8739 None:intergenic 80.0%
! CCCGGTACGGGTGCGGGTGC+GGG + tig0023943:8717-8736 Msa1412660:intron 80.0%
Chromosome Type Strat End Strand Name
tig0023943 gene 7559 10258 7559 ID=Msa1412660;Name=Msa1412660
tig0023943 mRNA 7559 10258 7559 ID=Msa1412660-mRNA-1;Parent=Msa1412660;Name=Msa1412660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=154|1|1|1|0.6|0.5|6|277|137
tig0023943 exon 7559 7703 7559 ID=Msa1412660-mRNA-1:exon:20729;Parent=Msa1412660-mRNA-1
tig0023943 exon 8645 8682 8645 ID=Msa1412660-mRNA-1:exon:20730;Parent=Msa1412660-mRNA-1
tig0023943 exon 9285 9315 9285 ID=Msa1412660-mRNA-1:exon:20731;Parent=Msa1412660-mRNA-1
tig0023943 exon 9417 9563 9417 ID=Msa1412660-mRNA-1:exon:20732;Parent=Msa1412660-mRNA-1
tig0023943 exon 9664 9737 9664 ID=Msa1412660-mRNA-1:exon:20733;Parent=Msa1412660-mRNA-1
tig0023943 exon 9849 10258 9849 ID=Msa1412660-mRNA-1:exon:20734;Parent=Msa1412660-mRNA-1
tig0023943 five_prime_UTR 7559 7703 7559 ID=Msa1412660-mRNA-1:five_prime_utr;Parent=Msa1412660-mRNA-1
tig0023943 five_prime_UTR 8645 8653 8645 ID=Msa1412660-mRNA-1:five_prime_utr;Parent=Msa1412660-mRNA-1
tig0023943 CDS 8654 8682 8654 ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1
tig0023943 CDS 9285 9315 9285 ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1
tig0023943 CDS 9417 9563 9417 ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1
tig0023943 CDS 9664 9737 9664 ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1
tig0023943 CDS 9849 9981 9849 ID=Msa1412660-mRNA-1:cds;Parent=Msa1412660-mRNA-1
tig0023943 three_prime_UTR 9982 10258 9982 ID=Msa1412660-mRNA-1:three_prime_utr;Parent=Msa1412660-mRNA-1
Gene Sequence

>Msa1412660

ATGTCAGCTCAAAAAGGAAGCATGGACAGTGGAGCTTCAAGGAAACGTATGAAACCTGGGGTAGTACAAGAAAAGATTAGAGATGAAGCAGAATCGCAGATTGTCCTTGTACAGGAGGAAGGGTTTGAGACTAACCAAGTTGGGTCTGAAGAAATGGAGCTCAATATTTCTCTTGTTCTTGAGAAGATTGAGAATTTTACTCAGAGGGTATCTGAGCTCTTGGAATCAGGGAAAACAATGTTTAAGGAGCTATGCAATGAATTTGAAGAGAAACTGATTATGATTCACAAGGAACAGGTTGAAAAATGGCAGGAAGAGATCAAAGAACTGCGTGCACTTGATGCCTCAAATGAGGAAGCTAATGCTCTTCTGCAAAATGCACGATATGTACTTCAGCTAACTCGTAATGATTAG

Protein sequence

>Msa1412660

MSAQKGSMDSGASRKRMKPGVVQEKIRDEAESQIVLVQEEGFETNQVGSEEMELNISLVLEKIENFTQRVSELLESGKTMFKELCNEFEEKLIMIHKEQVEKWQEEIKELRALDASNEEANALLQNARYVLQLTRND*