AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0822930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822930 MtrunA17_Chr5g0443231 94.792 288 13 2 1 288 1 286 0.0 548
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822930 AT1G06510.1 44.674 291 141 5 8 297 1 272 9.15e-73 226

Find 77 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACGCGATTGGAATTTA+TGG 0.179941 5_3:-61518489 None:intergenic
TTTATTAGAGTTTATAAATA+TGG 0.232154 5_3:+61518431 Msa0822930:three_prime_UTR
TGCCGAATTTCATCGTATTA+AGG 0.289250 5_3:-61517669 None:intergenic
TGTTGCCACCTGGAATTCTT+TGG 0.293734 5_3:-61517937 None:intergenic
TTATACTGCATACGAAGATT+TGG 0.322526 5_3:+61518529 Msa0822930:three_prime_UTR
CTGCTGACTCCGATAATCTT+AGG 0.339518 5_3:-61517057 None:intergenic
GACCTTAATACGATGAAATT+CGG 0.351240 5_3:+61517667 Msa0822930:CDS
TAACCCACAATTACTTTATG+TGG 0.353300 5_3:+61518301 Msa0822930:three_prime_UTR
CTTTACCTCACTTAACTTTG+TGG 0.355447 5_3:-61517218 None:intergenic
CTTCTTATTGTCACGAATGA+AGG 0.374651 5_3:-61515751 None:intergenic
GGTCCCCGTACCCTTGGTTC+TGG 0.391378 5_3:-61515881 None:intergenic
ATCCTCATACGAGGATTTCA+TGG 0.401246 5_3:+61517825 Msa0822930:CDS
AATAAAGCCACACTATTTGA+AGG 0.404655 5_3:-61518414 None:intergenic
TCAAGATATGCAAATTTCTT+CGG 0.409039 5_3:+61517696 Msa0822930:CDS
AAGAGAGACCAAAGAATTCC+AGG 0.414130 5_3:+61517929 Msa0822930:CDS
CATTTCCAGTGGCGGTGCTA+AGG 0.416658 5_3:-61517771 None:intergenic
CAATTACTTTATGTGGGAAC+GGG 0.419643 5_3:+61518308 Msa0822930:three_prime_UTR
ATTGAGGCTCCTAAGATTAT+CGG 0.420622 5_3:+61517048 Msa0822930:CDS
CTAGTTCAGTTTCAATCTCA+TGG 0.423872 5_3:-61517867 None:intergenic
AGCCACACTATTTGAAGGAC+TGG 0.452225 5_3:-61518409 None:intergenic
AGAGAATCCGCCGGATGATA+CGG 0.452905 5_3:+61517726 Msa0822930:CDS
TTGAAAGAAAGTCAGCTAGT+TGG 0.453383 5_3:+61517538 Msa0822930:CDS
TTCCATCGTTTGTTGCCACC+TGG 0.465887 5_3:-61517947 None:intergenic
TTCCATGAAATCCTCGTATG+AGG 0.468616 5_3:-61517827 None:intergenic
GGATATTTCTGACAAGCTGC+TGG 0.470813 5_3:-61517806 None:intergenic
TTTGGAGCAACGATTCGAAC+GGG 0.477054 5_3:-61517607 None:intergenic
TGTCAATTCAAACACGCGAT+TGG 0.483097 5_3:-61518498 None:intergenic
ATTTCCAGTGGCGGTGCTAA+GGG 0.497416 5_3:-61517770 None:intergenic
TTCCCACATAAAGTAATTGT+GGG 0.501086 5_3:-61518304 None:intergenic
AGATCCCTTAGCACCGCCAC+TGG 0.504381 5_3:+61517766 Msa0822930:CDS
TTCTCTGTCTCCGTATCATC+CGG 0.504637 5_3:-61517736 None:intergenic
GTTCCCACATAAAGTAATTG+TGG 0.510809 5_3:-61518305 None:intergenic
TCAACAAAGCTTCTGCTGCC+AGG 0.512283 5_3:+61518233 Msa0822930:CDS
AGCGCAGCATAAGAAGCATA+TGG 0.512440 5_3:-61515782 None:intergenic
ATTAAGGTCAGAATCATCCT+TGG 0.515417 5_3:-61517653 None:intergenic
CGTTCGAATCGTTGCTCCAA+AGG 0.522561 5_3:+61517609 Msa0822930:CDS
CCCCGTACCCTTGGTTCTGG+TGG 0.532745 5_3:-61515878 None:intergenic
ACAATTACTTTATGTGGGAA+CGG 0.536443 5_3:+61518307 Msa0822930:three_prime_UTR
GTTGTTACTCTAACACAGTT+CGG 0.540442 5_3:-61515709 None:intergenic
AACCCACAATTACTTTATGT+GGG 0.546354 5_3:+61518302 Msa0822930:three_prime_UTR
GCAAGAGAAGTTGTGAAGTG+AGG 0.549036 5_3:+61515679 None:intergenic
TTAAGGTCAGAATCATCCTT+GGG 0.555811 5_3:-61517652 None:intergenic
AGCAGCTATAAGCATGCAGA+AGG 0.557276 5_3:+61517096 Msa0822930:CDS
ATTTGAAGGACTGGGCCACT+AGG 0.561495 5_3:-61518400 None:intergenic
CAGCTATAAGCATGCAGAAG+GGG 0.563154 5_3:+61517098 Msa0822930:CDS
ATGTATTGATTTACTCCTAG+TGG 0.569190 5_3:+61518385 Msa0822930:three_prime_UTR
AGCTATAAGCATGCAGAAGG+GGG 0.572769 5_3:+61517099 Msa0822930:CDS
CTGCTCTGTATTGATGATGA+TGG 0.573291 5_3:-61515815 None:intergenic
TCGAATCGTTGCTCCAAAGG+AGG 0.581641 5_3:+61517612 Msa0822930:CDS
TAATGCCATGGATGATCTCA+AGG 0.581702 5_3:-61517972 None:intergenic
GCAGCTATAAGCATGCAGAA+GGG 0.583610 5_3:+61517097 Msa0822930:CDS
CAGCAAATAATGCTAGATTG+AGG 0.584425 5_3:+61517032 Msa0822930:intron
CAAGAGAAGTTGTGAAGTGA+GGG 0.584455 5_3:+61515680 None:intergenic
TGTACCTCTGTCTAATGCCA+TGG 0.585756 5_3:-61517984 None:intergenic
GATATTTCTGACAAGCTGCT+GGG 0.593061 5_3:-61517805 None:intergenic
GAACTCCTTGAGATCATCCA+TGG 0.594424 5_3:+61517967 Msa0822930:CDS
TGTGGGTTACAAGAAAATTG+TGG 0.597901 5_3:-61518287 None:intergenic
TGGAAATGTCACTATGAACA+TGG 0.602651 5_3:+61517558 Msa0822930:CDS
TGAAGGAACAGCCATGGTTG+TGG 0.606756 5_3:-61515734 None:intergenic
CACGAATGAAGGAACAGCCA+TGG 0.611848 5_3:-61515740 None:intergenic
CTTTGGAGCAACGATTCGAA+CGG 0.612772 5_3:-61517608 None:intergenic
GCCACACTATTTGAAGGACT+GGG 0.616233 5_3:-61518408 None:intergenic
GCAGATACCACCAGAACCAA+GGG 0.616798 5_3:+61515871 Msa0822930:CDS
AGCAGATACCACCAGAACCA+AGG 0.617947 5_3:+61515870 Msa0822930:CDS
GCCCAGTCCTTCAAATAGTG+TGG 0.621774 5_3:+61518407 Msa0822930:three_prime_UTR
TCGCAGAATCAGAAGTGCCA+AGG 0.622972 5_3:+61518175 Msa0822930:intron
TTCCAGGTGGCAACAAACGA+TGG 0.631547 5_3:+61517945 Msa0822930:CDS
AGTTCTAAAAGATTCTCCCA+AGG 0.655268 5_3:+61517636 Msa0822930:CDS
GTGCCAAGGAAGCAAAAGTG+AGG 0.657708 5_3:+61518189 Msa0822930:CDS
GGAAAGTCAAGAGAATCCGC+CGG 0.657796 5_3:+61517717 Msa0822930:CDS
GCTTTCCACAAAGTTAAGTG+AGG 0.667430 5_3:+61517213 Msa0822930:CDS
AGTAACAACAGCCACAACCA+TGG 0.679105 5_3:+61515723 Msa0822930:CDS
TCTGTCTCCGTATCATCCGG+CGG 0.688773 5_3:-61517733 None:intergenic
GTCAGAAATATCCTCATACG+AGG 0.693843 5_3:+61517816 Msa0822930:CDS
TCATCCATGGCATTAGACAG+AGG 0.707537 5_3:+61517980 Msa0822930:CDS
GCTCGTCAAGCAATTCAATG+CGG 0.741102 5_3:-61517192 None:intergenic
AGAGACCAAAGAATTCCAGG+TGG 0.785770 5_3:+61517932 Msa0822930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATTCAAATTAACA+TGG - chr5_3:61516323-61516342 None:intergenic 10.0%
!!! ATGTTAATTTGAATTTATAA+AGG + chr5_3:61516322-61516341 Msa0822930:intron 10.0%
!! AATGAAAATTAAATATTGAA+TGG + chr5_3:61516373-61516392 Msa0822930:intron 10.0%
!! AAGATATTAAAACTTATTTA+CGG + chr5_3:61516999-61517018 Msa0822930:intron 10.0%
!!! TATGAAAATTAATTTTGATT+AGG + chr5_3:61518060-61518079 Msa0822930:intron 10.0%
!! TTTATTAGAGTTTATAAATA+TGG + chr5_3:61518431-61518450 Msa0822930:three_prime_UTR 10.0%
!! TCCAAGTAAAAAAAAAAAAA+GGG - chr5_3:61516004-61516023 None:intergenic 15.0%
!! ATCCAAGTAAAAAAAAAAAA+AGG - chr5_3:61516005-61516024 None:intergenic 15.0%
!!! TAAACATTTTATCTTAAGTT+TGG - chr5_3:61516974-61516993 None:intergenic 15.0%
!!! TAACAAAAATTAATTTGTTG+AGG + chr5_3:61517322-61517341 Msa0822930:intron 15.0%
!!! TATCTAAAATTAAAACAACT+AGG - chr5_3:61518091-61518110 None:intergenic 15.0%
!! AATAAGCAAGAATGAATAAT+GGG - chr5_3:61515905-61515924 None:intergenic 20.0%
!! AAATAAGCAAGAATGAATAA+TGG - chr5_3:61515906-61515925 None:intergenic 20.0%
!!! TTTTTACACAATTCAATGAT+GGG - chr5_3:61515976-61515995 None:intergenic 20.0%
!!! TTTTTTACACAATTCAATGA+TGG - chr5_3:61515977-61515996 None:intergenic 20.0%
!!! TCCCTTTTTTTTTTTTTACT+TGG + chr5_3:61516000-61516019 Msa0822930:intron 20.0%
!! TGAATTTATAAAGGTTCATA+AGG + chr5_3:61516331-61516350 Msa0822930:intron 20.0%
!!! AGTTCTAATTATTTAGTATC+AGG + chr5_3:61516438-61516457 Msa0822930:intron 20.0%
!! TTAATTTATTTCACCTTTGA+TGG + chr5_3:61516757-61516776 Msa0822930:intron 20.0%
!! ATATTAAAACTTATTTACGG+TGG + chr5_3:61517002-61517021 Msa0822930:intron 20.0%
!! ATATTACCTGAAAACAAAAT+AGG - chr5_3:61517516-61517535 None:intergenic 20.0%
!! ATCTAAATCTACAAATGAAA+CGG - chr5_3:61518041-61518060 None:intergenic 20.0%
!!! TTTAAGAGTATTCATATAAG+AGG + chr5_3:61518115-61518134 Msa0822930:intron 20.0%
!! TTTTACACAATTCAATGATG+GGG - chr5_3:61515975-61515994 None:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAT+AGG + chr5_3:61516249-61516268 Msa0822930:intron 25.0%
! TTAAGCTGTTTATCCAAATA+GGG + chr5_3:61516250-61516269 Msa0822930:intron 25.0%
!! AAGTGCAATTTTATGCATAT+AGG - chr5_3:61516276-61516295 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTAAAC+AGG - chr5_3:61516548-61516567 None:intergenic 25.0%
! TTTATGTTGTATGTCCAAAT+TGG + chr5_3:61516634-61516653 Msa0822930:intron 25.0%
! TTATGTTGTATGTCCAAATT+GGG + chr5_3:61516635-61516654 Msa0822930:intron 25.0%
! ATAGCATTTATTCACTAAGT+AGG - chr5_3:61516915-61516934 None:intergenic 25.0%
! TATGCTTGTACAAAGAAAAA+AGG + chr5_3:61517141-61517160 Msa0822930:CDS 25.0%
! TGATATCATTGTCATAATGA+TGG - chr5_3:61517299-61517318 None:intergenic 25.0%
! TAAAACGTCATACAGTATAT+GGG + chr5_3:61517451-61517470 Msa0822930:intron 25.0%
!!! AAGAAACCTATTTTGTTTTC+AGG + chr5_3:61517507-61517526 Msa0822930:intron 25.0%
! TCAAGATATGCAAATTTCTT+CGG + chr5_3:61517696-61517715 Msa0822930:CDS 25.0%
!!! AAATGTCTCAGTTTTAGTAT+TGG + chr5_3:61517900-61517919 Msa0822930:CDS 25.0%
TTTACACAATTCAATGATGG+GGG - chr5_3:61515974-61515993 None:intergenic 30.0%
ACTGAGAGAATTTATGAACA+CGG + chr5_3:61516122-61516141 Msa0822930:intron 30.0%
!!! GAACTTTTGCTTTTTATAGC+TGG - chr5_3:61516423-61516442 None:intergenic 30.0%
GCTTTATGAATCTACATCTA+TGG + chr5_3:61516730-61516749 Msa0822930:intron 30.0%
TGGTTTATGATAGAACACTA+TGG + chr5_3:61516819-61516838 Msa0822930:intron 30.0%
! TAGTGTCAGTTTGTTCAAAT+TGG + chr5_3:61517359-61517378 Msa0822930:intron 30.0%
CTAAAACGTCATACAGTATA+TGG + chr5_3:61517450-61517469 Msa0822930:intron 30.0%
AAAACGTCATACAGTATATG+GGG + chr5_3:61517452-61517471 Msa0822930:intron 30.0%
GACCTTAATACGATGAAATT+CGG + chr5_3:61517667-61517686 Msa0822930:CDS 30.0%
!!! TATGTTGTTTTCATTTCCAG+TGG - chr5_3:61517785-61517804 None:intergenic 30.0%
!! AAGAGTATTCATATAAGAGG+CGG + chr5_3:61518118-61518137 Msa0822930:intron 30.0%
TAACCCACAATTACTTTATG+TGG + chr5_3:61518301-61518320 Msa0822930:three_prime_UTR 30.0%
AACCCACAATTACTTTATGT+GGG + chr5_3:61518302-61518321 Msa0822930:three_prime_UTR 30.0%
TTCCCACATAAAGTAATTGT+GGG - chr5_3:61518307-61518326 None:intergenic 30.0%
ACAATTACTTTATGTGGGAA+CGG + chr5_3:61518307-61518326 Msa0822930:three_prime_UTR 30.0%
!! ATGTATTGATTTACTCCTAG+TGG + chr5_3:61518385-61518404 Msa0822930:three_prime_UTR 30.0%
AATAAAGCCACACTATTTGA+AGG - chr5_3:61518417-61518436 None:intergenic 30.0%
TTATACTGCATACGAAGATT+TGG + chr5_3:61518529-61518548 Msa0822930:three_prime_UTR 30.0%
GTTGTTACTCTAACACAGTT+CGG - chr5_3:61515712-61515731 None:intergenic 35.0%
CTTCTTATTGTCACGAATGA+AGG - chr5_3:61515754-61515773 None:intergenic 35.0%
AATACGCCTCTCAAGATTAT+GGG + chr5_3:61516039-61516058 Msa0822930:intron 35.0%
TTATGCATATAGGCCCTATT+TGG - chr5_3:61516266-61516285 None:intergenic 35.0%
TCTGACTAGTGCTTATTTGT+AGG - chr5_3:61516479-61516498 None:intergenic 35.0%
AGTCAGATTGTGAGAGTTTA+TGG + chr5_3:61516492-61516511 Msa0822930:intron 35.0%
TACATGAAACATGAATTGCG+TGG + chr5_3:61516691-61516710 Msa0822930:intron 35.0%
AGGCTTATGATAGAACACTA+TGG + chr5_3:61516799-61516818 Msa0822930:intron 35.0%
CAGCAAATAATGCTAGATTG+AGG + chr5_3:61517032-61517051 Msa0822930:intron 35.0%
ATTGAGGCTCCTAAGATTAT+CGG + chr5_3:61517048-61517067 Msa0822930:CDS 35.0%
!! AAAAAAGGTGTTGCAAGCTT+TGG + chr5_3:61517156-61517175 Msa0822930:CDS 35.0%
CTTTACCTCACTTAACTTTG+TGG - chr5_3:61517221-61517240 None:intergenic 35.0%
ATTTGATTGTCAAGCATGTC+TGG - chr5_3:61517412-61517431 None:intergenic 35.0%
TTGAAAGAAAGTCAGCTAGT+TGG + chr5_3:61517538-61517557 Msa0822930:CDS 35.0%
TGGAAATGTCACTATGAACA+TGG + chr5_3:61517558-61517577 Msa0822930:CDS 35.0%
!!! TCTTTTAGAACTTCCTCCTT+TGG - chr5_3:61517628-61517647 None:intergenic 35.0%
!! AGTTCTAAAAGATTCTCCCA+AGG + chr5_3:61517636-61517655 Msa0822930:CDS 35.0%
TTAAGGTCAGAATCATCCTT+GGG - chr5_3:61517655-61517674 None:intergenic 35.0%
ATTAAGGTCAGAATCATCCT+TGG - chr5_3:61517656-61517675 None:intergenic 35.0%
TGCCGAATTTCATCGTATTA+AGG - chr5_3:61517672-61517691 None:intergenic 35.0%
CTAGTTCAGTTTCAATCTCA+TGG - chr5_3:61517870-61517889 None:intergenic 35.0%
! TGTGGGTTACAAGAAAATTG+TGG - chr5_3:61518290-61518309 None:intergenic 35.0%
GTTCCCACATAAAGTAATTG+TGG - chr5_3:61518308-61518327 None:intergenic 35.0%
CAATTACTTTATGTGGGAAC+GGG + chr5_3:61518308-61518327 Msa0822930:three_prime_UTR 35.0%
AAACACGCGATTGGAATTTA+TGG - chr5_3:61518492-61518511 None:intergenic 35.0%
!! CTGCTCTGTATTGATGATGA+TGG - chr5_3:61515818-61515837 None:intergenic 40.0%
! ATGATGGGGGTGACAATAAT+GGG - chr5_3:61515961-61515980 None:intergenic 40.0%
! AATGATGGGGGTGACAATAA+TGG - chr5_3:61515962-61515981 None:intergenic 40.0%
! CATAATCTTGAGAGGCGTAT+TGG - chr5_3:61516040-61516059 None:intergenic 40.0%
CAATACGCCTCTCAAGATTA+TGG + chr5_3:61516038-61516057 Msa0822930:intron 40.0%
AACATGCCCATAATCTTGAG+AGG - chr5_3:61516048-61516067 None:intergenic 40.0%
CTCAAGATTATGGGCATGTT+TGG + chr5_3:61516048-61516067 Msa0822930:intron 40.0%
AAGTTAAACAGGAGAGCTTG+TGG - chr5_3:61516537-61516556 None:intergenic 40.0%
TGAAGAGACTAGACCCAATT+TGG - chr5_3:61516651-61516670 None:intergenic 40.0%
TTGGGTCTAGTCTCTTCAAT+AGG + chr5_3:61516653-61516672 Msa0822930:intron 40.0%
ACTAAGTAGGTCTCCATCAA+AGG - chr5_3:61516773-61516792 None:intergenic 40.0%
TTTGATGGAGACCTACTTAG+TGG + chr5_3:61516772-61516791 Msa0822930:intron 40.0%
TTGATGGAGACCTACTTAGT+GGG + chr5_3:61516773-61516792 Msa0822930:intron 40.0%
! TAAGCCTTATCCCACTAAGT+AGG - chr5_3:61516786-61516805 None:intergenic 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - chr5_3:61516868-61516887 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - chr5_3:61516869-61516888 None:intergenic 40.0%
!! TTGTTTCTGACCTTTGCTAG+AGG + chr5_3:61516939-61516958 Msa0822930:intron 40.0%
! TGTTTCTGACCTTTGCTAGA+GGG + chr5_3:61516940-61516959 Msa0822930:intron 40.0%
AGGGGGATGAAAATTATGCA+AGG + chr5_3:61517116-61517135 Msa0822930:CDS 40.0%
GGGGGATGAAAATTATGCAA+GGG + chr5_3:61517117-61517136 Msa0822930:CDS 40.0%
GCTTTCCACAAAGTTAAGTG+AGG + chr5_3:61517213-61517232 Msa0822930:CDS 40.0%
ATGATGAGGTAGTAGACACA+TGG - chr5_3:61517387-61517406 None:intergenic 40.0%
CATACAGTATATGGGGACAA+AGG + chr5_3:61517459-61517478 Msa0822930:intron 40.0%
!! GTTGTTTTCATTTCCAGTGG+CGG - chr5_3:61517782-61517801 None:intergenic 40.0%
! GATATTTCTGACAAGCTGCT+GGG - chr5_3:61517808-61517827 None:intergenic 40.0%
GTCAGAAATATCCTCATACG+AGG + chr5_3:61517816-61517835 Msa0822930:CDS 40.0%
ATCCTCATACGAGGATTTCA+TGG + chr5_3:61517825-61517844 Msa0822930:CDS 40.0%
TTCCATGAAATCCTCGTATG+AGG - chr5_3:61517830-61517849 None:intergenic 40.0%
AAGAGAGACCAAAGAATTCC+AGG + chr5_3:61517929-61517948 Msa0822930:CDS 40.0%
TAATGCCATGGATGATCTCA+AGG - chr5_3:61517975-61517994 None:intergenic 40.0%
!!! GACTCAAGTTAGTTTTCACC+TGG - chr5_3:61518254-61518273 None:intergenic 40.0%
TGTCAATTCAAACACGCGAT+TGG - chr5_3:61518501-61518520 None:intergenic 40.0%
AGTAACAACAGCCACAACCA+TGG + chr5_3:61515723-61515742 Msa0822930:CDS 45.0%
! AGCGCAGCATAAGAAGCATA+TGG - chr5_3:61515785-61515804 None:intergenic 45.0%
GAGACCTACTTAGTGGGATA+AGG + chr5_3:61516779-61516798 Msa0822930:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - chr5_3:61516870-61516889 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG + chr5_3:61516867-61516886 Msa0822930:intron 45.0%
!! CTGCTGACTCCGATAATCTT+AGG - chr5_3:61517060-61517079 None:intergenic 45.0%
AGCAGCTATAAGCATGCAGA+AGG + chr5_3:61517096-61517115 Msa0822930:CDS 45.0%
GCAGCTATAAGCATGCAGAA+GGG + chr5_3:61517097-61517116 Msa0822930:CDS 45.0%
CAGCTATAAGCATGCAGAAG+GGG + chr5_3:61517098-61517117 Msa0822930:CDS 45.0%
AGCTATAAGCATGCAGAAGG+GGG + chr5_3:61517099-61517118 Msa0822930:CDS 45.0%
GCTCGTCAAGCAATTCAATG+CGG - chr5_3:61517195-61517214 None:intergenic 45.0%
AAGCATGTCTGGCAATGATG+AGG - chr5_3:61517401-61517420 None:intergenic 45.0%
! TTTGGAGCAACGATTCGAAC+GGG - chr5_3:61517610-61517629 None:intergenic 45.0%
!! CTTTGGAGCAACGATTCGAA+CGG - chr5_3:61517611-61517630 None:intergenic 45.0%
TTCTCTGTCTCCGTATCATC+CGG - chr5_3:61517739-61517758 None:intergenic 45.0%
! GGATATTTCTGACAAGCTGC+TGG - chr5_3:61517809-61517828 None:intergenic 45.0%
AGAGACCAAAGAATTCCAGG+TGG + chr5_3:61517932-61517951 Msa0822930:CDS 45.0%
TGTTGCCACCTGGAATTCTT+TGG - chr5_3:61517940-61517959 None:intergenic 45.0%
GAACTCCTTGAGATCATCCA+TGG + chr5_3:61517967-61517986 Msa0822930:CDS 45.0%
TCATCCATGGCATTAGACAG+AGG + chr5_3:61517980-61517999 Msa0822930:CDS 45.0%
TGTACCTCTGTCTAATGCCA+TGG - chr5_3:61517987-61518006 None:intergenic 45.0%
TAAGAGGCGGAAAGTAATGC+AGG + chr5_3:61518131-61518150 Msa0822930:intron 45.0%
AAGAGGCGGAAAGTAATGCA+GGG + chr5_3:61518132-61518151 Msa0822930:intron 45.0%
!! GATCCTCACTTTTGCTTCCT+TGG - chr5_3:61518195-61518214 None:intergenic 45.0%
GCCACACTATTTGAAGGACT+GGG - chr5_3:61518411-61518430 None:intergenic 45.0%
AGCCACACTATTTGAAGGAC+TGG - chr5_3:61518412-61518431 None:intergenic 45.0%
!!! TTTATTTTTATTTAATCATT+TGG + chr5_3:61516167-61516186 Msa0822930:intron 5.0%
TGAAGGAACAGCCATGGTTG+TGG - chr5_3:61515737-61515756 None:intergenic 50.0%
CACGAATGAAGGAACAGCCA+TGG - chr5_3:61515743-61515762 None:intergenic 50.0%
AGCAGATACCACCAGAACCA+AGG + chr5_3:61515870-61515889 Msa0822930:CDS 50.0%
GCAGATACCACCAGAACCAA+GGG + chr5_3:61515871-61515890 Msa0822930:CDS 50.0%
TACCACCAGAACCAAGGGTA+CGG + chr5_3:61515876-61515895 Msa0822930:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - chr5_3:61516856-61516875 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + chr5_3:61516855-61516874 Msa0822930:intron 50.0%
TGTAGCTGACCCCACTTAGT+GGG + chr5_3:61516856-61516875 Msa0822930:intron 50.0%
GACATGTCACCCTCTAGCAA+AGG - chr5_3:61516952-61516971 None:intergenic 50.0%
CGTTCGAATCGTTGCTCCAA+AGG + chr5_3:61517609-61517628 Msa0822930:CDS 50.0%
TCGAATCGTTGCTCCAAAGG+AGG + chr5_3:61517612-61517631 Msa0822930:CDS 50.0%
GGAAAGTCAAGAGAATCCGC+CGG + chr5_3:61517717-61517736 Msa0822930:CDS 50.0%
AGAGAATCCGCCGGATGATA+CGG + chr5_3:61517726-61517745 Msa0822930:CDS 50.0%
! ATTTCCAGTGGCGGTGCTAA+GGG - chr5_3:61517773-61517792 None:intergenic 50.0%
TTCCAGGTGGCAACAAACGA+TGG + chr5_3:61517945-61517964 Msa0822930:CDS 50.0%
! TTCCATCGTTTGTTGCCACC+TGG - chr5_3:61517950-61517969 None:intergenic 50.0%
!! TCGCAGAATCAGAAGTGCCA+AGG + chr5_3:61518175-61518194 Msa0822930:intron 50.0%
GTGCCAAGGAAGCAAAAGTG+AGG + chr5_3:61518189-61518208 Msa0822930:CDS 50.0%
TCAACAAAGCTTCTGCTGCC+AGG + chr5_3:61518233-61518252 Msa0822930:CDS 50.0%
ATTTGAAGGACTGGGCCACT+AGG - chr5_3:61518403-61518422 None:intergenic 50.0%
GCCCAGTCCTTCAAATAGTG+TGG + chr5_3:61518407-61518426 Msa0822930:three_prime_UTR 50.0%
! ACCACCAGAACCAAGGGTAC+GGG + chr5_3:61515877-61515896 Msa0822930:intron 55.0%
!! ATAATGGGTCCCCGTACCCT+TGG - chr5_3:61515890-61515909 None:intergenic 55.0%
TCTGTCTCCGTATCATCCGG+CGG - chr5_3:61517736-61517755 None:intergenic 55.0%
! CATTTCCAGTGGCGGTGCTA+AGG - chr5_3:61517774-61517793 None:intergenic 55.0%
! CCACCAGAACCAAGGGTACG+GGG + chr5_3:61515878-61515897 Msa0822930:intron 60.0%
AGATCCCTTAGCACCGCCAC+TGG + chr5_3:61517766-61517785 Msa0822930:CDS 60.0%
!! CCCCGTACCCTTGGTTCTGG+TGG - chr5_3:61515881-61515900 None:intergenic 65.0%
GGTCCCCGTACCCTTGGTTC+TGG - chr5_3:61515884-61515903 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 61515682 61518566 61515682 ID=Msa0822930;Name=Msa0822930
chr5_3 mRNA 61515682 61518566 61515682 ID=Msa0822930-mRNA-1;Parent=Msa0822930;Name=Msa0822930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=21|0.66|0.75|1|1|1|4|308|317
chr5_3 exon 61515682 61515892 61515682 ID=Msa0822930-mRNA-1:exon:18985;Parent=Msa0822930-mRNA-1
chr5_3 exon 61517035 61517234 61517035 ID=Msa0822930-mRNA-1:exon:18986;Parent=Msa0822930-mRNA-1
chr5_3 exon 61517529 61518014 61517529 ID=Msa0822930-mRNA-1:exon:18987;Parent=Msa0822930-mRNA-1
chr5_3 exon 61518181 61518566 61518181 ID=Msa0822930-mRNA-1:exon:18988;Parent=Msa0822930-mRNA-1
chr5_3 five_prime_UTR 61515682 61515702 61515682 ID=Msa0822930-mRNA-1:five_prime_utr;Parent=Msa0822930-mRNA-1
chr5_3 CDS 61515703 61515892 61515703 ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1
chr5_3 CDS 61517035 61517234 61517035 ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1
chr5_3 CDS 61517529 61518014 61517529 ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1
chr5_3 CDS 61518181 61518258 61518181 ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1
chr5_3 three_prime_UTR 61518259 61518566 61518259 ID=Msa0822930-mRNA-1:three_prime_utr;Parent=Msa0822930-mRNA-1
Gene Sequence

>Msa0822930

ATGATACCGAACTGTGTTAGAGTAACAACAGCCACAACCATGGCTGTTCCTTCATTCGTGACAATAAGAAGAAGAAGATCCATATGCTTCTTATGCTGCGCTTCTTCTTCAACCATCATCATCAATACAGAGCAGTTACGTTCTCAACTTGATCATCTTCATGCTGAAGCAGATACCACCAGAACCAAGGCAAATAATGCTAGATTGAGGCTCCTAAGATTATCGGAGTCAGCAGAGAAGCTTACAAAACAAGCAGCTATAAGCATGCAGAAGGGGGATGAAAATTATGCAAGGGATATGCTTGTACAAAGAAAAAAGGTGTTGCAAGCTTTGGAGAAGTCTAAAAGCCGCATTGAATTGCTTGACGAGCTTTCCACAAAGTTAAGTGAGGTAATATCTTTGAAAGAAAGTCAGCTAGTTGGAAATGTCACTATGAACATGGAAGACACAACAGAAGATGCTTCAAGTCCCGTTCGAATCGTTGCTCCAAAGGAGGAAGTTCTAAAAGATTCTCCCAAGGATGATTCTGACCTTAATACGATGAAATTCGGCAATAATCAAGATATGCAAATTTCTTCGGAAAGTCAAGAGAATCCGCCGGATGATACGGAGACAGAGAATCTTCTGAGATCCCTTAGCACCGCCACTGGAAATGAAAACAACATACCCAGCAGCTTGTCAGAAATATCCTCATACGAGGATTTCATGGAACATATAGATCAAAAGCTCCATGAGATTGAAACTGAACTAGTTGCATTCTTAAATGTCTCAGTTTTAGTATTGGATAGTGAAGAGAGACCAAAGAATTCCAGGTGGCAACAAACGATGGAACTCCTTGAGATCATCCATGGCATTAGACAGAGGTACAACATTTCAAATCAGAAGTGCCAAGGAAGCAAAAGTGAGGATCTGATCAATTTTGCTTTGCTCAACAAAGCTTCTGCTGCCAGGTGA

Protein sequence

>Msa0822930

MIPNCVRVTTATTMAVPSFVTIRRRRSICFLCCASSSTIIINTEQLRSQLDHLHAEADTTRTKANNARLRLLRLSESAEKLTKQAAISMQKGDENYARDMLVQRKKVLQALEKSKSRIELLDELSTKLSEVISLKESQLVGNVTMNMEDTTEDASSPVRIVAPKEEVLKDSPKDDSDLNTMKFGNNQDMQISSESQENPPDDTETENLLRSLSTATGNENNIPSSLSEISSYEDFMEHIDQKLHEIETELVAFLNVSVLVLDSEERPKNSRWQQTMELLEIIHGIRQRYNISNQKCQGSKSEDLINFALLNKASAAR*