Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0822930 | XP_003617436.2 | 94.792 | 288 | 13 | 2 | 1 | 288 | 1 | 286 | 0.0 | 548 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0822930 | G7KD67 | 94.792 | 288 | 13 | 2 | 1 | 288 | 1 | 286 | 0.0 | 548 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006050 | Msa0822930 | 0.823455 | 1.372471e-53 | -8.615850e-47 |
Msa0024330 | Msa0822930 | 0.800671 | 1.292031e-48 | -8.615850e-47 |
Msa0028050 | Msa0822930 | 0.800981 | 1.116924e-48 | -8.615850e-47 |
Msa0056160 | Msa0822930 | 0.813610 | 2.345486e-51 | -8.615850e-47 |
Msa0092750 | Msa0822930 | 0.810120 | 1.349934e-50 | -8.615850e-47 |
Msa0094240 | Msa0822930 | 0.800405 | 1.463833e-48 | -8.615850e-47 |
Msa0094670 | Msa0822930 | 0.809827 | 1.561048e-50 | -8.615850e-47 |
Msa0110500 | Msa0822930 | 0.801044 | 1.083927e-48 | -8.615850e-47 |
Msa0114960 | Msa0822930 | 0.801190 | 1.012080e-48 | -8.615850e-47 |
Msa0115950 | Msa0822930 | 0.811538 | 6.659157e-51 | -8.615850e-47 |
Msa0118250 | Msa0822930 | 0.827349 | 1.643137e-54 | -8.615850e-47 |
Msa0625310 | Msa0822930 | 0.810651 | 1.036570e-50 | -8.615850e-47 |
Msa0626900 | Msa0822930 | 0.800560 | 1.361257e-48 | -8.615850e-47 |
Msa0635350 | Msa0822930 | 0.818800 | 1.622585e-52 | -8.615850e-47 |
Msa0638040 | Msa0822930 | 0.815303 | 9.907082e-52 | -8.615850e-47 |
Msa0672350 | Msa0822930 | 0.821702 | 3.509057e-53 | -8.615850e-47 |
Msa0677110 | Msa0822930 | 0.814438 | 1.540946e-51 | -8.615850e-47 |
Msa0679780 | Msa0822930 | 0.805873 | 1.081886e-49 | -8.615850e-47 |
Msa0688760 | Msa0822930 | 0.836484 | 9.110679e-57 | -8.615850e-47 |
Msa0692910 | Msa0822930 | 0.814958 | 1.181546e-51 | -8.615850e-47 |
Msa0741710 | Msa0822930 | 0.815230 | 1.028234e-51 | -8.615850e-47 |
Msa0772400 | Msa0822930 | 0.800685 | 1.283271e-48 | -8.615850e-47 |
Msa0774560 | Msa0822930 | 0.804054 | 2.596695e-49 | -8.615850e-47 |
Msa0803220 | Msa0822930 | 0.802704 | 4.945489e-49 | -8.615850e-47 |
Msa0813630 | Msa0822930 | 0.813205 | 2.879657e-51 | -8.615850e-47 |
Msa0822930 | Msa0829110 | 0.819793 | 9.639400e-53 | -8.615850e-47 |
Msa0822930 | Msa0829430 | 0.843230 | 1.592343e-58 | -8.615850e-47 |
Msa0822930 | Msa0829570 | 0.816062 | 6.711366e-52 | -8.615850e-47 |
Msa0822930 | Msa0848780 | 0.801764 | 7.719582e-49 | -8.615850e-47 |
Msa0822930 | Msa0862040 | 0.995199 | 6.046790e-214 | -8.615850e-47 |
Msa0822930 | Msa0868040 | 0.803816 | 2.910536e-49 | -8.615850e-47 |
Msa0822930 | Msa0929400 | 0.840383 | 8.989028e-58 | -8.615850e-47 |
Msa0822930 | Msa1026880 | 0.827298 | 1.689840e-54 | -8.615850e-47 |
Msa0822930 | Msa1044790 | 0.812540 | 4.027159e-51 | -8.615850e-47 |
Msa0822930 | Msa1054890 | 0.810013 | 1.423556e-50 | -8.615850e-47 |
Msa0822930 | Msa1069440 | 0.803676 | 3.110755e-49 | -8.615850e-47 |
Msa0822930 | Msa1072640 | 0.808332 | 3.262782e-50 | -8.615850e-47 |
Msa0822930 | Msa1117830 | 0.822245 | 2.626202e-53 | -8.615850e-47 |
Msa0822930 | Msa1126910 | 0.803304 | 3.715943e-49 | -8.615850e-47 |
Msa0822930 | Msa1130070 | 0.818781 | 1.638665e-52 | -8.615850e-47 |
Msa0822930 | Msa1130730 | 0.816104 | 6.566918e-52 | -8.615850e-47 |
Msa0822930 | Msa1144420 | 0.800216 | 1.599171e-48 | -8.615850e-47 |
Msa0822930 | Msa1157310 | 0.825831 | 3.782365e-54 | -8.615850e-47 |
Msa0822930 | Msa1161160 | 0.804628 | 1.972146e-49 | -8.615850e-47 |
Msa0822930 | Msa1184640 | 0.819113 | 1.377075e-52 | -8.615850e-47 |
Msa0822930 | Msa1193680 | 0.810135 | 1.340166e-50 | -8.615850e-47 |
Msa0822930 | Msa1205520 | 0.810152 | 1.328484e-50 | -8.615850e-47 |
Msa0822930 | Msa1212740 | 0.801217 | 9.991120e-49 | -8.615850e-47 |
Msa0822930 | Msa1213550 | 0.811054 | 8.481993e-51 | -8.615850e-47 |
Msa0822930 | Msa1221540 | 0.804193 | 2.428994e-49 | -8.615850e-47 |
Msa0822930 | Msa1230190 | 0.803391 | 3.565725e-49 | -8.615850e-47 |
Msa0822930 | Msa1280020 | 0.822473 | 2.324621e-53 | -8.615850e-47 |
Msa0822930 | Msa1297720 | 0.818418 | 1.981158e-52 | -8.615850e-47 |
Msa0822930 | Msa1331400 | 0.805982 | 1.026229e-49 | -8.615850e-47 |
Msa0822930 | Msa1334020 | 0.806446 | 8.194722e-50 | -8.615850e-47 |
Msa0822930 | Msa1341790 | 0.823575 | 1.286782e-53 | -8.615850e-47 |
Msa0822930 | Msa1356730 | 0.800583 | 1.346703e-48 | -8.615850e-47 |
Msa0822930 | Msa1361090 | 0.800481 | 1.412468e-48 | -8.615850e-47 |
Msa0822930 | Msa1364420 | 0.804410 | 2.189082e-49 | -8.615850e-47 |
Msa0822930 | Msa1365120 | 0.840803 | 6.978283e-58 | -8.615850e-47 |
Msa0822930 | Msa1368800 | 0.816496 | 5.368436e-52 | -8.615850e-47 |
Msa0822930 | Msa1378840 | 0.827944 | 1.182337e-54 | -8.615850e-47 |
Msa0822930 | Msa1379360 | 0.803397 | 3.555029e-49 | -8.615850e-47 |
Msa0822930 | Msa1384980 | 0.837301 | 5.635350e-57 | -8.615850e-47 |
Msa0822930 | Msa1386020 | 0.810557 | 1.086544e-50 | -8.615850e-47 |
Msa0822930 | Msa1397110 | 0.804680 | 1.923451e-49 | -8.615850e-47 |
Msa0822930 | Msa1432350 | 0.837295 | 5.655804e-57 | -8.615850e-47 |
Msa0822930 | Msa1435990 | 0.808348 | 3.237808e-50 | -8.615850e-47 |
Msa0822930 | Msa1450420 | 0.816986 | 4.168334e-52 | -8.615850e-47 |
Msa0822930 | Msa1451780 | 0.816408 | 5.616618e-52 | -8.615850e-47 |
Msa0822930 | Msa1463500 | 0.800298 | 1.538655e-48 | -8.615850e-47 |
Msa0127060 | Msa0822930 | 0.803488 | 3.404473e-49 | -8.615850e-47 |
Msa0147990 | Msa0822930 | 0.805437 | 1.335789e-49 | -8.615850e-47 |
Msa0197600 | Msa0822930 | 0.803489 | 3.401733e-49 | -8.615850e-47 |
Msa0206600 | Msa0822930 | 0.801248 | 9.845835e-49 | -8.615850e-47 |
Msa0228180 | Msa0822930 | 0.804435 | 2.162999e-49 | -8.615850e-47 |
Msa0386390 | Msa0822930 | 0.800973 | 1.120935e-48 | -8.615850e-47 |
Msa0390350 | Msa0822930 | 0.805045 | 1.613464e-49 | -8.615850e-47 |
Msa0393140 | Msa0822930 | 0.814442 | 1.537766e-51 | -8.615850e-47 |
Msa0423590 | Msa0822930 | 0.800848 | 1.188555e-48 | -8.615850e-47 |
Msa0470650 | Msa0822930 | 0.819321 | 1.235139e-52 | -8.615850e-47 |
Msa0471080 | Msa0822930 | 0.825835 | 3.774562e-54 | -8.615850e-47 |
Msa0471890 | Msa0822930 | 0.809258 | 2.067665e-50 | -8.615850e-47 |
Msa0475740 | Msa0822930 | 0.803996 | 2.670481e-49 | -8.615850e-47 |
Msa0476820 | Msa0822930 | 0.811079 | 8.376219e-51 | -8.615850e-47 |
Msa0479790 | Msa0822930 | 0.800695 | 1.277316e-48 | -8.615850e-47 |
Msa0272420 | Msa0822930 | 0.811700 | 6.139501e-51 | -8.615850e-47 |
Msa0282860 | Msa0822930 | 0.820772 | 5.748284e-53 | -8.615850e-47 |
Msa0312570 | Msa0822930 | 0.800984 | 1.114914e-48 | -8.615850e-47 |
Msa0312780 | Msa0822930 | 0.808864 | 2.511325e-50 | -8.615850e-47 |
Msa0315010 | Msa0822930 | 0.811402 | 7.126766e-51 | -8.615850e-47 |
Msa0327900 | Msa0822930 | 0.807638 | 4.584505e-50 | -8.615850e-47 |
Msa0338900 | Msa0822930 | 0.802899 | 4.505888e-49 | -8.615850e-47 |
Msa0358720 | Msa0822930 | 0.805245 | 1.465381e-49 | -8.615850e-47 |
Msa0504630 | Msa0822930 | 0.802042 | 6.767763e-49 | -8.615850e-47 |
Msa0528170 | Msa0822930 | 0.832229 | 1.065037e-55 | -8.615850e-47 |
Msa0533140 | Msa0822930 | 0.825710 | 4.041177e-54 | -8.615850e-47 |
Msa0534380 | Msa0822930 | 0.801677 | 8.041709e-49 | -8.615850e-47 |
Msa0539400 | Msa0822930 | 0.802675 | 5.013957e-49 | -8.615850e-47 |
Msa0540160 | Msa0822930 | 0.810875 | 9.273423e-51 | -8.615850e-47 |
Msa0540520 | Msa0822930 | 0.866065 | 3.742303e-65 | -8.615850e-47 |
Msa0553350 | Msa0822930 | 0.813905 | 2.020531e-51 | -8.615850e-47 |
Msa0565150 | Msa0822930 | 0.813189 | 2.902782e-51 | -8.615850e-47 |
Msa0565530 | Msa0822930 | 0.818145 | 2.283329e-52 | -8.615850e-47 |
Msa0565930 | Msa0822930 | 0.826131 | 3.209237e-54 | -8.615850e-47 |
Msa0568810 | Msa0822930 | 0.813294 | 2.752341e-51 | -8.615850e-47 |
Msa0589540 | Msa0822930 | 0.836743 | 7.826336e-57 | -8.615850e-47 |
Msa0599250 | Msa0822930 | 0.808448 | 3.082119e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0822930 | MtrunA17_Chr5g0443231 | 94.792 | 288 | 13 | 2 | 1 | 288 | 1 | 286 | 0.0 | 548 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0822930 | AT1G06510.1 | 44.674 | 291 | 141 | 5 | 8 | 297 | 1 | 272 | 9.15e-73 | 226 |
Find 77 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACACGCGATTGGAATTTA+TGG | 0.179941 | 5_3:-61518489 | None:intergenic |
TTTATTAGAGTTTATAAATA+TGG | 0.232154 | 5_3:+61518431 | Msa0822930:three_prime_UTR |
TGCCGAATTTCATCGTATTA+AGG | 0.289250 | 5_3:-61517669 | None:intergenic |
TGTTGCCACCTGGAATTCTT+TGG | 0.293734 | 5_3:-61517937 | None:intergenic |
TTATACTGCATACGAAGATT+TGG | 0.322526 | 5_3:+61518529 | Msa0822930:three_prime_UTR |
CTGCTGACTCCGATAATCTT+AGG | 0.339518 | 5_3:-61517057 | None:intergenic |
GACCTTAATACGATGAAATT+CGG | 0.351240 | 5_3:+61517667 | Msa0822930:CDS |
TAACCCACAATTACTTTATG+TGG | 0.353300 | 5_3:+61518301 | Msa0822930:three_prime_UTR |
CTTTACCTCACTTAACTTTG+TGG | 0.355447 | 5_3:-61517218 | None:intergenic |
CTTCTTATTGTCACGAATGA+AGG | 0.374651 | 5_3:-61515751 | None:intergenic |
GGTCCCCGTACCCTTGGTTC+TGG | 0.391378 | 5_3:-61515881 | None:intergenic |
ATCCTCATACGAGGATTTCA+TGG | 0.401246 | 5_3:+61517825 | Msa0822930:CDS |
AATAAAGCCACACTATTTGA+AGG | 0.404655 | 5_3:-61518414 | None:intergenic |
TCAAGATATGCAAATTTCTT+CGG | 0.409039 | 5_3:+61517696 | Msa0822930:CDS |
AAGAGAGACCAAAGAATTCC+AGG | 0.414130 | 5_3:+61517929 | Msa0822930:CDS |
CATTTCCAGTGGCGGTGCTA+AGG | 0.416658 | 5_3:-61517771 | None:intergenic |
CAATTACTTTATGTGGGAAC+GGG | 0.419643 | 5_3:+61518308 | Msa0822930:three_prime_UTR |
ATTGAGGCTCCTAAGATTAT+CGG | 0.420622 | 5_3:+61517048 | Msa0822930:CDS |
CTAGTTCAGTTTCAATCTCA+TGG | 0.423872 | 5_3:-61517867 | None:intergenic |
AGCCACACTATTTGAAGGAC+TGG | 0.452225 | 5_3:-61518409 | None:intergenic |
AGAGAATCCGCCGGATGATA+CGG | 0.452905 | 5_3:+61517726 | Msa0822930:CDS |
TTGAAAGAAAGTCAGCTAGT+TGG | 0.453383 | 5_3:+61517538 | Msa0822930:CDS |
TTCCATCGTTTGTTGCCACC+TGG | 0.465887 | 5_3:-61517947 | None:intergenic |
TTCCATGAAATCCTCGTATG+AGG | 0.468616 | 5_3:-61517827 | None:intergenic |
GGATATTTCTGACAAGCTGC+TGG | 0.470813 | 5_3:-61517806 | None:intergenic |
TTTGGAGCAACGATTCGAAC+GGG | 0.477054 | 5_3:-61517607 | None:intergenic |
TGTCAATTCAAACACGCGAT+TGG | 0.483097 | 5_3:-61518498 | None:intergenic |
ATTTCCAGTGGCGGTGCTAA+GGG | 0.497416 | 5_3:-61517770 | None:intergenic |
TTCCCACATAAAGTAATTGT+GGG | 0.501086 | 5_3:-61518304 | None:intergenic |
AGATCCCTTAGCACCGCCAC+TGG | 0.504381 | 5_3:+61517766 | Msa0822930:CDS |
TTCTCTGTCTCCGTATCATC+CGG | 0.504637 | 5_3:-61517736 | None:intergenic |
GTTCCCACATAAAGTAATTG+TGG | 0.510809 | 5_3:-61518305 | None:intergenic |
TCAACAAAGCTTCTGCTGCC+AGG | 0.512283 | 5_3:+61518233 | Msa0822930:CDS |
AGCGCAGCATAAGAAGCATA+TGG | 0.512440 | 5_3:-61515782 | None:intergenic |
ATTAAGGTCAGAATCATCCT+TGG | 0.515417 | 5_3:-61517653 | None:intergenic |
CGTTCGAATCGTTGCTCCAA+AGG | 0.522561 | 5_3:+61517609 | Msa0822930:CDS |
CCCCGTACCCTTGGTTCTGG+TGG | 0.532745 | 5_3:-61515878 | None:intergenic |
ACAATTACTTTATGTGGGAA+CGG | 0.536443 | 5_3:+61518307 | Msa0822930:three_prime_UTR |
GTTGTTACTCTAACACAGTT+CGG | 0.540442 | 5_3:-61515709 | None:intergenic |
AACCCACAATTACTTTATGT+GGG | 0.546354 | 5_3:+61518302 | Msa0822930:three_prime_UTR |
GCAAGAGAAGTTGTGAAGTG+AGG | 0.549036 | 5_3:+61515679 | None:intergenic |
TTAAGGTCAGAATCATCCTT+GGG | 0.555811 | 5_3:-61517652 | None:intergenic |
AGCAGCTATAAGCATGCAGA+AGG | 0.557276 | 5_3:+61517096 | Msa0822930:CDS |
ATTTGAAGGACTGGGCCACT+AGG | 0.561495 | 5_3:-61518400 | None:intergenic |
CAGCTATAAGCATGCAGAAG+GGG | 0.563154 | 5_3:+61517098 | Msa0822930:CDS |
ATGTATTGATTTACTCCTAG+TGG | 0.569190 | 5_3:+61518385 | Msa0822930:three_prime_UTR |
AGCTATAAGCATGCAGAAGG+GGG | 0.572769 | 5_3:+61517099 | Msa0822930:CDS |
CTGCTCTGTATTGATGATGA+TGG | 0.573291 | 5_3:-61515815 | None:intergenic |
TCGAATCGTTGCTCCAAAGG+AGG | 0.581641 | 5_3:+61517612 | Msa0822930:CDS |
TAATGCCATGGATGATCTCA+AGG | 0.581702 | 5_3:-61517972 | None:intergenic |
GCAGCTATAAGCATGCAGAA+GGG | 0.583610 | 5_3:+61517097 | Msa0822930:CDS |
CAGCAAATAATGCTAGATTG+AGG | 0.584425 | 5_3:+61517032 | Msa0822930:intron |
CAAGAGAAGTTGTGAAGTGA+GGG | 0.584455 | 5_3:+61515680 | None:intergenic |
TGTACCTCTGTCTAATGCCA+TGG | 0.585756 | 5_3:-61517984 | None:intergenic |
GATATTTCTGACAAGCTGCT+GGG | 0.593061 | 5_3:-61517805 | None:intergenic |
GAACTCCTTGAGATCATCCA+TGG | 0.594424 | 5_3:+61517967 | Msa0822930:CDS |
TGTGGGTTACAAGAAAATTG+TGG | 0.597901 | 5_3:-61518287 | None:intergenic |
TGGAAATGTCACTATGAACA+TGG | 0.602651 | 5_3:+61517558 | Msa0822930:CDS |
TGAAGGAACAGCCATGGTTG+TGG | 0.606756 | 5_3:-61515734 | None:intergenic |
CACGAATGAAGGAACAGCCA+TGG | 0.611848 | 5_3:-61515740 | None:intergenic |
CTTTGGAGCAACGATTCGAA+CGG | 0.612772 | 5_3:-61517608 | None:intergenic |
GCCACACTATTTGAAGGACT+GGG | 0.616233 | 5_3:-61518408 | None:intergenic |
GCAGATACCACCAGAACCAA+GGG | 0.616798 | 5_3:+61515871 | Msa0822930:CDS |
AGCAGATACCACCAGAACCA+AGG | 0.617947 | 5_3:+61515870 | Msa0822930:CDS |
GCCCAGTCCTTCAAATAGTG+TGG | 0.621774 | 5_3:+61518407 | Msa0822930:three_prime_UTR |
TCGCAGAATCAGAAGTGCCA+AGG | 0.622972 | 5_3:+61518175 | Msa0822930:intron |
TTCCAGGTGGCAACAAACGA+TGG | 0.631547 | 5_3:+61517945 | Msa0822930:CDS |
AGTTCTAAAAGATTCTCCCA+AGG | 0.655268 | 5_3:+61517636 | Msa0822930:CDS |
GTGCCAAGGAAGCAAAAGTG+AGG | 0.657708 | 5_3:+61518189 | Msa0822930:CDS |
GGAAAGTCAAGAGAATCCGC+CGG | 0.657796 | 5_3:+61517717 | Msa0822930:CDS |
GCTTTCCACAAAGTTAAGTG+AGG | 0.667430 | 5_3:+61517213 | Msa0822930:CDS |
AGTAACAACAGCCACAACCA+TGG | 0.679105 | 5_3:+61515723 | Msa0822930:CDS |
TCTGTCTCCGTATCATCCGG+CGG | 0.688773 | 5_3:-61517733 | None:intergenic |
GTCAGAAATATCCTCATACG+AGG | 0.693843 | 5_3:+61517816 | Msa0822930:CDS |
TCATCCATGGCATTAGACAG+AGG | 0.707537 | 5_3:+61517980 | Msa0822930:CDS |
GCTCGTCAAGCAATTCAATG+CGG | 0.741102 | 5_3:-61517192 | None:intergenic |
AGAGACCAAAGAATTCCAGG+TGG | 0.785770 | 5_3:+61517932 | Msa0822930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATAAATTCAAATTAACA+TGG | - | chr5_3:61516323-61516342 | None:intergenic | 10.0% |
!!! | ATGTTAATTTGAATTTATAA+AGG | + | chr5_3:61516322-61516341 | Msa0822930:intron | 10.0% |
!! | AATGAAAATTAAATATTGAA+TGG | + | chr5_3:61516373-61516392 | Msa0822930:intron | 10.0% |
!! | AAGATATTAAAACTTATTTA+CGG | + | chr5_3:61516999-61517018 | Msa0822930:intron | 10.0% |
!!! | TATGAAAATTAATTTTGATT+AGG | + | chr5_3:61518060-61518079 | Msa0822930:intron | 10.0% |
!! | TTTATTAGAGTTTATAAATA+TGG | + | chr5_3:61518431-61518450 | Msa0822930:three_prime_UTR | 10.0% |
!! | TCCAAGTAAAAAAAAAAAAA+GGG | - | chr5_3:61516004-61516023 | None:intergenic | 15.0% |
!! | ATCCAAGTAAAAAAAAAAAA+AGG | - | chr5_3:61516005-61516024 | None:intergenic | 15.0% |
!!! | TAAACATTTTATCTTAAGTT+TGG | - | chr5_3:61516974-61516993 | None:intergenic | 15.0% |
!!! | TAACAAAAATTAATTTGTTG+AGG | + | chr5_3:61517322-61517341 | Msa0822930:intron | 15.0% |
!!! | TATCTAAAATTAAAACAACT+AGG | - | chr5_3:61518091-61518110 | None:intergenic | 15.0% |
!! | AATAAGCAAGAATGAATAAT+GGG | - | chr5_3:61515905-61515924 | None:intergenic | 20.0% |
!! | AAATAAGCAAGAATGAATAA+TGG | - | chr5_3:61515906-61515925 | None:intergenic | 20.0% |
!!! | TTTTTACACAATTCAATGAT+GGG | - | chr5_3:61515976-61515995 | None:intergenic | 20.0% |
!!! | TTTTTTACACAATTCAATGA+TGG | - | chr5_3:61515977-61515996 | None:intergenic | 20.0% |
!!! | TCCCTTTTTTTTTTTTTACT+TGG | + | chr5_3:61516000-61516019 | Msa0822930:intron | 20.0% |
!! | TGAATTTATAAAGGTTCATA+AGG | + | chr5_3:61516331-61516350 | Msa0822930:intron | 20.0% |
!!! | AGTTCTAATTATTTAGTATC+AGG | + | chr5_3:61516438-61516457 | Msa0822930:intron | 20.0% |
!! | TTAATTTATTTCACCTTTGA+TGG | + | chr5_3:61516757-61516776 | Msa0822930:intron | 20.0% |
!! | ATATTAAAACTTATTTACGG+TGG | + | chr5_3:61517002-61517021 | Msa0822930:intron | 20.0% |
!! | ATATTACCTGAAAACAAAAT+AGG | - | chr5_3:61517516-61517535 | None:intergenic | 20.0% |
!! | ATCTAAATCTACAAATGAAA+CGG | - | chr5_3:61518041-61518060 | None:intergenic | 20.0% |
!!! | TTTAAGAGTATTCATATAAG+AGG | + | chr5_3:61518115-61518134 | Msa0822930:intron | 20.0% |
!! | TTTTACACAATTCAATGATG+GGG | - | chr5_3:61515975-61515994 | None:intergenic | 25.0% |
! | ATTAAGCTGTTTATCCAAAT+AGG | + | chr5_3:61516249-61516268 | Msa0822930:intron | 25.0% |
! | TTAAGCTGTTTATCCAAATA+GGG | + | chr5_3:61516250-61516269 | Msa0822930:intron | 25.0% |
!! | AAGTGCAATTTTATGCATAT+AGG | - | chr5_3:61516276-61516295 | None:intergenic | 25.0% |
!!! | GTTGTTTTCATAAGTTAAAC+AGG | - | chr5_3:61516548-61516567 | None:intergenic | 25.0% |
! | TTTATGTTGTATGTCCAAAT+TGG | + | chr5_3:61516634-61516653 | Msa0822930:intron | 25.0% |
! | TTATGTTGTATGTCCAAATT+GGG | + | chr5_3:61516635-61516654 | Msa0822930:intron | 25.0% |
! | ATAGCATTTATTCACTAAGT+AGG | - | chr5_3:61516915-61516934 | None:intergenic | 25.0% |
! | TATGCTTGTACAAAGAAAAA+AGG | + | chr5_3:61517141-61517160 | Msa0822930:CDS | 25.0% |
! | TGATATCATTGTCATAATGA+TGG | - | chr5_3:61517299-61517318 | None:intergenic | 25.0% |
! | TAAAACGTCATACAGTATAT+GGG | + | chr5_3:61517451-61517470 | Msa0822930:intron | 25.0% |
!!! | AAGAAACCTATTTTGTTTTC+AGG | + | chr5_3:61517507-61517526 | Msa0822930:intron | 25.0% |
! | TCAAGATATGCAAATTTCTT+CGG | + | chr5_3:61517696-61517715 | Msa0822930:CDS | 25.0% |
!!! | AAATGTCTCAGTTTTAGTAT+TGG | + | chr5_3:61517900-61517919 | Msa0822930:CDS | 25.0% |
TTTACACAATTCAATGATGG+GGG | - | chr5_3:61515974-61515993 | None:intergenic | 30.0% | |
ACTGAGAGAATTTATGAACA+CGG | + | chr5_3:61516122-61516141 | Msa0822930:intron | 30.0% | |
!!! | GAACTTTTGCTTTTTATAGC+TGG | - | chr5_3:61516423-61516442 | None:intergenic | 30.0% |
GCTTTATGAATCTACATCTA+TGG | + | chr5_3:61516730-61516749 | Msa0822930:intron | 30.0% | |
TGGTTTATGATAGAACACTA+TGG | + | chr5_3:61516819-61516838 | Msa0822930:intron | 30.0% | |
! | TAGTGTCAGTTTGTTCAAAT+TGG | + | chr5_3:61517359-61517378 | Msa0822930:intron | 30.0% |
CTAAAACGTCATACAGTATA+TGG | + | chr5_3:61517450-61517469 | Msa0822930:intron | 30.0% | |
AAAACGTCATACAGTATATG+GGG | + | chr5_3:61517452-61517471 | Msa0822930:intron | 30.0% | |
GACCTTAATACGATGAAATT+CGG | + | chr5_3:61517667-61517686 | Msa0822930:CDS | 30.0% | |
!!! | TATGTTGTTTTCATTTCCAG+TGG | - | chr5_3:61517785-61517804 | None:intergenic | 30.0% |
!! | AAGAGTATTCATATAAGAGG+CGG | + | chr5_3:61518118-61518137 | Msa0822930:intron | 30.0% |
TAACCCACAATTACTTTATG+TGG | + | chr5_3:61518301-61518320 | Msa0822930:three_prime_UTR | 30.0% | |
AACCCACAATTACTTTATGT+GGG | + | chr5_3:61518302-61518321 | Msa0822930:three_prime_UTR | 30.0% | |
TTCCCACATAAAGTAATTGT+GGG | - | chr5_3:61518307-61518326 | None:intergenic | 30.0% | |
ACAATTACTTTATGTGGGAA+CGG | + | chr5_3:61518307-61518326 | Msa0822930:three_prime_UTR | 30.0% | |
!! | ATGTATTGATTTACTCCTAG+TGG | + | chr5_3:61518385-61518404 | Msa0822930:three_prime_UTR | 30.0% |
AATAAAGCCACACTATTTGA+AGG | - | chr5_3:61518417-61518436 | None:intergenic | 30.0% | |
TTATACTGCATACGAAGATT+TGG | + | chr5_3:61518529-61518548 | Msa0822930:three_prime_UTR | 30.0% | |
GTTGTTACTCTAACACAGTT+CGG | - | chr5_3:61515712-61515731 | None:intergenic | 35.0% | |
CTTCTTATTGTCACGAATGA+AGG | - | chr5_3:61515754-61515773 | None:intergenic | 35.0% | |
AATACGCCTCTCAAGATTAT+GGG | + | chr5_3:61516039-61516058 | Msa0822930:intron | 35.0% | |
TTATGCATATAGGCCCTATT+TGG | - | chr5_3:61516266-61516285 | None:intergenic | 35.0% | |
TCTGACTAGTGCTTATTTGT+AGG | - | chr5_3:61516479-61516498 | None:intergenic | 35.0% | |
AGTCAGATTGTGAGAGTTTA+TGG | + | chr5_3:61516492-61516511 | Msa0822930:intron | 35.0% | |
TACATGAAACATGAATTGCG+TGG | + | chr5_3:61516691-61516710 | Msa0822930:intron | 35.0% | |
AGGCTTATGATAGAACACTA+TGG | + | chr5_3:61516799-61516818 | Msa0822930:intron | 35.0% | |
CAGCAAATAATGCTAGATTG+AGG | + | chr5_3:61517032-61517051 | Msa0822930:intron | 35.0% | |
ATTGAGGCTCCTAAGATTAT+CGG | + | chr5_3:61517048-61517067 | Msa0822930:CDS | 35.0% | |
!! | AAAAAAGGTGTTGCAAGCTT+TGG | + | chr5_3:61517156-61517175 | Msa0822930:CDS | 35.0% |
CTTTACCTCACTTAACTTTG+TGG | - | chr5_3:61517221-61517240 | None:intergenic | 35.0% | |
ATTTGATTGTCAAGCATGTC+TGG | - | chr5_3:61517412-61517431 | None:intergenic | 35.0% | |
TTGAAAGAAAGTCAGCTAGT+TGG | + | chr5_3:61517538-61517557 | Msa0822930:CDS | 35.0% | |
TGGAAATGTCACTATGAACA+TGG | + | chr5_3:61517558-61517577 | Msa0822930:CDS | 35.0% | |
!!! | TCTTTTAGAACTTCCTCCTT+TGG | - | chr5_3:61517628-61517647 | None:intergenic | 35.0% |
!! | AGTTCTAAAAGATTCTCCCA+AGG | + | chr5_3:61517636-61517655 | Msa0822930:CDS | 35.0% |
TTAAGGTCAGAATCATCCTT+GGG | - | chr5_3:61517655-61517674 | None:intergenic | 35.0% | |
ATTAAGGTCAGAATCATCCT+TGG | - | chr5_3:61517656-61517675 | None:intergenic | 35.0% | |
TGCCGAATTTCATCGTATTA+AGG | - | chr5_3:61517672-61517691 | None:intergenic | 35.0% | |
CTAGTTCAGTTTCAATCTCA+TGG | - | chr5_3:61517870-61517889 | None:intergenic | 35.0% | |
! | TGTGGGTTACAAGAAAATTG+TGG | - | chr5_3:61518290-61518309 | None:intergenic | 35.0% |
GTTCCCACATAAAGTAATTG+TGG | - | chr5_3:61518308-61518327 | None:intergenic | 35.0% | |
CAATTACTTTATGTGGGAAC+GGG | + | chr5_3:61518308-61518327 | Msa0822930:three_prime_UTR | 35.0% | |
AAACACGCGATTGGAATTTA+TGG | - | chr5_3:61518492-61518511 | None:intergenic | 35.0% | |
!! | CTGCTCTGTATTGATGATGA+TGG | - | chr5_3:61515818-61515837 | None:intergenic | 40.0% |
! | ATGATGGGGGTGACAATAAT+GGG | - | chr5_3:61515961-61515980 | None:intergenic | 40.0% |
! | AATGATGGGGGTGACAATAA+TGG | - | chr5_3:61515962-61515981 | None:intergenic | 40.0% |
! | CATAATCTTGAGAGGCGTAT+TGG | - | chr5_3:61516040-61516059 | None:intergenic | 40.0% |
CAATACGCCTCTCAAGATTA+TGG | + | chr5_3:61516038-61516057 | Msa0822930:intron | 40.0% | |
AACATGCCCATAATCTTGAG+AGG | - | chr5_3:61516048-61516067 | None:intergenic | 40.0% | |
CTCAAGATTATGGGCATGTT+TGG | + | chr5_3:61516048-61516067 | Msa0822930:intron | 40.0% | |
AAGTTAAACAGGAGAGCTTG+TGG | - | chr5_3:61516537-61516556 | None:intergenic | 40.0% | |
TGAAGAGACTAGACCCAATT+TGG | - | chr5_3:61516651-61516670 | None:intergenic | 40.0% | |
TTGGGTCTAGTCTCTTCAAT+AGG | + | chr5_3:61516653-61516672 | Msa0822930:intron | 40.0% | |
ACTAAGTAGGTCTCCATCAA+AGG | - | chr5_3:61516773-61516792 | None:intergenic | 40.0% | |
TTTGATGGAGACCTACTTAG+TGG | + | chr5_3:61516772-61516791 | Msa0822930:intron | 40.0% | |
TTGATGGAGACCTACTTAGT+GGG | + | chr5_3:61516773-61516792 | Msa0822930:intron | 40.0% | |
! | TAAGCCTTATCCCACTAAGT+AGG | - | chr5_3:61516786-61516805 | None:intergenic | 40.0% |
! | AAGCTTTATCCCACTAAGTG+GGG | - | chr5_3:61516868-61516887 | None:intergenic | 40.0% |
! | CAAGCTTTATCCCACTAAGT+GGG | - | chr5_3:61516869-61516888 | None:intergenic | 40.0% |
!! | TTGTTTCTGACCTTTGCTAG+AGG | + | chr5_3:61516939-61516958 | Msa0822930:intron | 40.0% |
! | TGTTTCTGACCTTTGCTAGA+GGG | + | chr5_3:61516940-61516959 | Msa0822930:intron | 40.0% |
AGGGGGATGAAAATTATGCA+AGG | + | chr5_3:61517116-61517135 | Msa0822930:CDS | 40.0% | |
GGGGGATGAAAATTATGCAA+GGG | + | chr5_3:61517117-61517136 | Msa0822930:CDS | 40.0% | |
GCTTTCCACAAAGTTAAGTG+AGG | + | chr5_3:61517213-61517232 | Msa0822930:CDS | 40.0% | |
ATGATGAGGTAGTAGACACA+TGG | - | chr5_3:61517387-61517406 | None:intergenic | 40.0% | |
CATACAGTATATGGGGACAA+AGG | + | chr5_3:61517459-61517478 | Msa0822930:intron | 40.0% | |
!! | GTTGTTTTCATTTCCAGTGG+CGG | - | chr5_3:61517782-61517801 | None:intergenic | 40.0% |
! | GATATTTCTGACAAGCTGCT+GGG | - | chr5_3:61517808-61517827 | None:intergenic | 40.0% |
GTCAGAAATATCCTCATACG+AGG | + | chr5_3:61517816-61517835 | Msa0822930:CDS | 40.0% | |
ATCCTCATACGAGGATTTCA+TGG | + | chr5_3:61517825-61517844 | Msa0822930:CDS | 40.0% | |
TTCCATGAAATCCTCGTATG+AGG | - | chr5_3:61517830-61517849 | None:intergenic | 40.0% | |
AAGAGAGACCAAAGAATTCC+AGG | + | chr5_3:61517929-61517948 | Msa0822930:CDS | 40.0% | |
TAATGCCATGGATGATCTCA+AGG | - | chr5_3:61517975-61517994 | None:intergenic | 40.0% | |
!!! | GACTCAAGTTAGTTTTCACC+TGG | - | chr5_3:61518254-61518273 | None:intergenic | 40.0% |
TGTCAATTCAAACACGCGAT+TGG | - | chr5_3:61518501-61518520 | None:intergenic | 40.0% | |
AGTAACAACAGCCACAACCA+TGG | + | chr5_3:61515723-61515742 | Msa0822930:CDS | 45.0% | |
! | AGCGCAGCATAAGAAGCATA+TGG | - | chr5_3:61515785-61515804 | None:intergenic | 45.0% |
GAGACCTACTTAGTGGGATA+AGG | + | chr5_3:61516779-61516798 | Msa0822930:intron | 45.0% | |
! | CCAAGCTTTATCCCACTAAG+TGG | - | chr5_3:61516870-61516889 | None:intergenic | 45.0% |
CCACTTAGTGGGATAAAGCT+TGG | + | chr5_3:61516867-61516886 | Msa0822930:intron | 45.0% | |
!! | CTGCTGACTCCGATAATCTT+AGG | - | chr5_3:61517060-61517079 | None:intergenic | 45.0% |
AGCAGCTATAAGCATGCAGA+AGG | + | chr5_3:61517096-61517115 | Msa0822930:CDS | 45.0% | |
GCAGCTATAAGCATGCAGAA+GGG | + | chr5_3:61517097-61517116 | Msa0822930:CDS | 45.0% | |
CAGCTATAAGCATGCAGAAG+GGG | + | chr5_3:61517098-61517117 | Msa0822930:CDS | 45.0% | |
AGCTATAAGCATGCAGAAGG+GGG | + | chr5_3:61517099-61517118 | Msa0822930:CDS | 45.0% | |
GCTCGTCAAGCAATTCAATG+CGG | - | chr5_3:61517195-61517214 | None:intergenic | 45.0% | |
AAGCATGTCTGGCAATGATG+AGG | - | chr5_3:61517401-61517420 | None:intergenic | 45.0% | |
! | TTTGGAGCAACGATTCGAAC+GGG | - | chr5_3:61517610-61517629 | None:intergenic | 45.0% |
!! | CTTTGGAGCAACGATTCGAA+CGG | - | chr5_3:61517611-61517630 | None:intergenic | 45.0% |
TTCTCTGTCTCCGTATCATC+CGG | - | chr5_3:61517739-61517758 | None:intergenic | 45.0% | |
! | GGATATTTCTGACAAGCTGC+TGG | - | chr5_3:61517809-61517828 | None:intergenic | 45.0% |
AGAGACCAAAGAATTCCAGG+TGG | + | chr5_3:61517932-61517951 | Msa0822930:CDS | 45.0% | |
TGTTGCCACCTGGAATTCTT+TGG | - | chr5_3:61517940-61517959 | None:intergenic | 45.0% | |
GAACTCCTTGAGATCATCCA+TGG | + | chr5_3:61517967-61517986 | Msa0822930:CDS | 45.0% | |
TCATCCATGGCATTAGACAG+AGG | + | chr5_3:61517980-61517999 | Msa0822930:CDS | 45.0% | |
TGTACCTCTGTCTAATGCCA+TGG | - | chr5_3:61517987-61518006 | None:intergenic | 45.0% | |
TAAGAGGCGGAAAGTAATGC+AGG | + | chr5_3:61518131-61518150 | Msa0822930:intron | 45.0% | |
AAGAGGCGGAAAGTAATGCA+GGG | + | chr5_3:61518132-61518151 | Msa0822930:intron | 45.0% | |
!! | GATCCTCACTTTTGCTTCCT+TGG | - | chr5_3:61518195-61518214 | None:intergenic | 45.0% |
GCCACACTATTTGAAGGACT+GGG | - | chr5_3:61518411-61518430 | None:intergenic | 45.0% | |
AGCCACACTATTTGAAGGAC+TGG | - | chr5_3:61518412-61518431 | None:intergenic | 45.0% | |
!!! | TTTATTTTTATTTAATCATT+TGG | + | chr5_3:61516167-61516186 | Msa0822930:intron | 5.0% |
TGAAGGAACAGCCATGGTTG+TGG | - | chr5_3:61515737-61515756 | None:intergenic | 50.0% | |
CACGAATGAAGGAACAGCCA+TGG | - | chr5_3:61515743-61515762 | None:intergenic | 50.0% | |
AGCAGATACCACCAGAACCA+AGG | + | chr5_3:61515870-61515889 | Msa0822930:CDS | 50.0% | |
GCAGATACCACCAGAACCAA+GGG | + | chr5_3:61515871-61515890 | Msa0822930:CDS | 50.0% | |
TACCACCAGAACCAAGGGTA+CGG | + | chr5_3:61515876-61515895 | Msa0822930:intron | 50.0% | |
ACTAAGTGGGGTCAGCTACA+TGG | - | chr5_3:61516856-61516875 | None:intergenic | 50.0% | |
ATGTAGCTGACCCCACTTAG+TGG | + | chr5_3:61516855-61516874 | Msa0822930:intron | 50.0% | |
TGTAGCTGACCCCACTTAGT+GGG | + | chr5_3:61516856-61516875 | Msa0822930:intron | 50.0% | |
GACATGTCACCCTCTAGCAA+AGG | - | chr5_3:61516952-61516971 | None:intergenic | 50.0% | |
CGTTCGAATCGTTGCTCCAA+AGG | + | chr5_3:61517609-61517628 | Msa0822930:CDS | 50.0% | |
TCGAATCGTTGCTCCAAAGG+AGG | + | chr5_3:61517612-61517631 | Msa0822930:CDS | 50.0% | |
GGAAAGTCAAGAGAATCCGC+CGG | + | chr5_3:61517717-61517736 | Msa0822930:CDS | 50.0% | |
AGAGAATCCGCCGGATGATA+CGG | + | chr5_3:61517726-61517745 | Msa0822930:CDS | 50.0% | |
! | ATTTCCAGTGGCGGTGCTAA+GGG | - | chr5_3:61517773-61517792 | None:intergenic | 50.0% |
TTCCAGGTGGCAACAAACGA+TGG | + | chr5_3:61517945-61517964 | Msa0822930:CDS | 50.0% | |
! | TTCCATCGTTTGTTGCCACC+TGG | - | chr5_3:61517950-61517969 | None:intergenic | 50.0% |
!! | TCGCAGAATCAGAAGTGCCA+AGG | + | chr5_3:61518175-61518194 | Msa0822930:intron | 50.0% |
GTGCCAAGGAAGCAAAAGTG+AGG | + | chr5_3:61518189-61518208 | Msa0822930:CDS | 50.0% | |
TCAACAAAGCTTCTGCTGCC+AGG | + | chr5_3:61518233-61518252 | Msa0822930:CDS | 50.0% | |
ATTTGAAGGACTGGGCCACT+AGG | - | chr5_3:61518403-61518422 | None:intergenic | 50.0% | |
GCCCAGTCCTTCAAATAGTG+TGG | + | chr5_3:61518407-61518426 | Msa0822930:three_prime_UTR | 50.0% | |
! | ACCACCAGAACCAAGGGTAC+GGG | + | chr5_3:61515877-61515896 | Msa0822930:intron | 55.0% |
!! | ATAATGGGTCCCCGTACCCT+TGG | - | chr5_3:61515890-61515909 | None:intergenic | 55.0% |
TCTGTCTCCGTATCATCCGG+CGG | - | chr5_3:61517736-61517755 | None:intergenic | 55.0% | |
! | CATTTCCAGTGGCGGTGCTA+AGG | - | chr5_3:61517774-61517793 | None:intergenic | 55.0% |
! | CCACCAGAACCAAGGGTACG+GGG | + | chr5_3:61515878-61515897 | Msa0822930:intron | 60.0% |
AGATCCCTTAGCACCGCCAC+TGG | + | chr5_3:61517766-61517785 | Msa0822930:CDS | 60.0% | |
!! | CCCCGTACCCTTGGTTCTGG+TGG | - | chr5_3:61515881-61515900 | None:intergenic | 65.0% |
GGTCCCCGTACCCTTGGTTC+TGG | - | chr5_3:61515884-61515903 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 61515682 | 61518566 | 61515682 | ID=Msa0822930;Name=Msa0822930 |
chr5_3 | mRNA | 61515682 | 61518566 | 61515682 | ID=Msa0822930-mRNA-1;Parent=Msa0822930;Name=Msa0822930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=21|0.66|0.75|1|1|1|4|308|317 |
chr5_3 | exon | 61515682 | 61515892 | 61515682 | ID=Msa0822930-mRNA-1:exon:18985;Parent=Msa0822930-mRNA-1 |
chr5_3 | exon | 61517035 | 61517234 | 61517035 | ID=Msa0822930-mRNA-1:exon:18986;Parent=Msa0822930-mRNA-1 |
chr5_3 | exon | 61517529 | 61518014 | 61517529 | ID=Msa0822930-mRNA-1:exon:18987;Parent=Msa0822930-mRNA-1 |
chr5_3 | exon | 61518181 | 61518566 | 61518181 | ID=Msa0822930-mRNA-1:exon:18988;Parent=Msa0822930-mRNA-1 |
chr5_3 | five_prime_UTR | 61515682 | 61515702 | 61515682 | ID=Msa0822930-mRNA-1:five_prime_utr;Parent=Msa0822930-mRNA-1 |
chr5_3 | CDS | 61515703 | 61515892 | 61515703 | ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1 |
chr5_3 | CDS | 61517035 | 61517234 | 61517035 | ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1 |
chr5_3 | CDS | 61517529 | 61518014 | 61517529 | ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1 |
chr5_3 | CDS | 61518181 | 61518258 | 61518181 | ID=Msa0822930-mRNA-1:cds;Parent=Msa0822930-mRNA-1 |
chr5_3 | three_prime_UTR | 61518259 | 61518566 | 61518259 | ID=Msa0822930-mRNA-1:three_prime_utr;Parent=Msa0822930-mRNA-1 |
Gene Sequence |
Protein sequence |