AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297720 MtrunA17_Chr4g0054781 99.127 229 2 0 1 229 1 229 1.20e-171 471
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297720 AT1G32520.1 73.640 239 53 7 1 229 1 239 6.73e-121 343

Find 71 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCGTGGTGGGCCGCAATT+TGG 0.091289 8_3:-58214574 Msa1297720:CDS
ACAAGTCCATATTGTTTATT+TGG 0.118956 8_3:-58215343 Msa1297720:CDS
CCAACCTTGGGCAAAATTAT+TGG 0.172726 8_3:+58214625 None:intergenic
CTAGTATAAGCTTGCAATTT+TGG 0.186690 8_3:+58214348 None:intergenic
CTTATACTAGAACTTCATTA+TGG 0.202644 8_3:-58214335 Msa1297720:exon
CTCGTGGTGGGCCGCAATTT+GGG 0.206328 8_3:-58214573 Msa1297720:CDS
GCTGGGCCTGATACTAATTC+TGG 0.242393 8_3:-58214499 Msa1297720:CDS
CTCCTTGCCATCTTCCCTTT+TGG 0.242724 8_3:+58214429 None:intergenic
AAAGGGCCATGTGTAATAAT+AGG 0.265542 8_3:-58214766 Msa1297720:CDS
CCAGCAAAACCACCCATAAC+TGG 0.267578 8_3:+58214517 None:intergenic
TCTGTGCTTCTATATCCTTC+AGG 0.271435 8_3:+58214706 None:intergenic
CACCCATAACTGGGGCTAAT+GGG 0.279555 8_3:+58214527 None:intergenic
TTACTTTATGAAAACAAATA+AGG 0.301338 8_3:-58215494 Msa1297720:five_prime_UTR
TGAATAGTGTTAATTAGTTT+TGG 0.305439 8_3:-58215421 Msa1297720:five_prime_UTR
AATGGTCTATAATTCGGATT+TGG 0.308738 8_3:-58213994 Msa1297720:three_prime_UTR
GGGCTGATGGGCTTCTCATC+GGG 0.321712 8_3:-58214552 Msa1297720:CDS
TTCCAACCAAATAAACAATA+TGG 0.321938 8_3:+58215337 None:intergenic
CCACCCATAACTGGGGCTAA+TGG 0.338213 8_3:+58214526 None:intergenic
ACAGACAACTCTTTCAAGTT+TGG 0.342835 8_3:-58214739 Msa1297720:CDS
TTGTCACCGATTTAGACTTT+TGG 0.347040 8_3:-58214248 Msa1297720:three_prime_UTR
GGGCCGCAATTTGGGGCTGA+TGG 0.348553 8_3:-58214565 Msa1297720:CDS
GGGGCTGATGGGCTTCTCAT+CGG 0.364017 8_3:-58214553 Msa1297720:CDS
AAATTCAAATTCATCAGTAT+TGG 0.380585 8_3:+58214297 None:intergenic
TTATACTAGAACTTCATTAT+GGG 0.401059 8_3:-58214334 Msa1297720:exon
GTGTCTAATGGTCTATAATT+CGG 0.401659 8_3:-58214000 Msa1297720:three_prime_UTR
TGCACCACTGCCACCAACCT+TGG 0.407937 8_3:+58214612 None:intergenic
CTGTGCTTCTATATCCTTCA+GGG 0.408081 8_3:+58214707 None:intergenic
GTCCATATTGTTTATTTGGT+TGG 0.412950 8_3:-58215339 Msa1297720:CDS
ATAAGTAGTTGTATCCTTCA+AGG 0.417109 8_3:-58214034 Msa1297720:three_prime_UTR
GAGACAAGCCAAGTCTAGAT+TGG 0.419344 8_3:-58214464 Msa1297720:CDS
TTGCCCAAGGTTGGTGGCAG+TGG 0.422693 8_3:-58214616 Msa1297720:CDS
CTTGATCCAAAAGTCTAAAT+CGG 0.434028 8_3:+58214242 None:intergenic
GCACCACTGCCACCAACCTT+GGG 0.438734 8_3:+58214613 None:intergenic
ACAAATCACATACTATTTCA+TGG 0.441288 8_3:+58214068 None:intergenic
TGCTACAGGGCAACAATTGA+TGG 0.444287 8_3:-58214826 Msa1297720:CDS
GTATGTAAATGCGTGTCTAA+TGG 0.450011 8_3:-58214012 Msa1297720:three_prime_UTR
GGCCGCAATTTGGGGCTGAT+GGG 0.455119 8_3:-58214564 Msa1297720:CDS
CACGCATTTACATACCTTGA+AGG 0.458519 8_3:+58214020 None:intergenic
TGTTTATTTGGTTGGAACAT+AGG 0.460604 8_3:-58215331 Msa1297720:CDS
AGACAAGCCAAGTCTAGATT+GGG 0.460900 8_3:-58214463 Msa1297720:CDS
AGGAACTGAAATGCTGCTAC+AGG 0.463256 8_3:-58214840 Msa1297720:CDS
TGGGATTGTCTTATGCCAAA+AGG 0.463760 8_3:-58214444 Msa1297720:CDS
CAGCAAAACCACCCATAACT+GGG 0.479885 8_3:+58214518 None:intergenic
CCAACACCAGAATTAGTATC+AGG 0.485918 8_3:+58214493 None:intergenic
AACAAATAAGGATAAGATGA+TGG 0.487914 8_3:-58215482 Msa1297720:five_prime_UTR
GGGATTGTCTTATGCCAAAA+GGG 0.500151 8_3:-58214443 Msa1297720:CDS
ACCCATAACTGGGGCTAATG+GGG 0.505857 8_3:+58214528 None:intergenic
TAGAACTTCATTATGGGGTA+AGG 0.524780 8_3:-58214328 Msa1297720:three_prime_UTR
CTTTAAAATCACAACATTGG+TGG 0.526175 8_3:+58214785 None:intergenic
CAAATTCTCTATCGTTCCAA+TGG 0.526696 8_3:-58215372 Msa1297720:CDS
TCGTGGTGGGCCGCAATTTG+GGG 0.534768 8_3:-58214572 Msa1297720:CDS
TCTTATGCCAAAAGGGAAGA+TGG 0.539221 8_3:-58214436 Msa1297720:CDS
ATGTGATTGTACACATCGTA+AGG 0.542479 8_3:-58214153 Msa1297720:three_prime_UTR
TTTGGTGCATTTAACCCTGA+AGG 0.542646 8_3:-58214721 Msa1297720:CDS
CTGTTTGATTATGCTCGTGG+TGG 0.546126 8_3:-58214586 Msa1297720:CDS
CCTGATACTAATTCTGGTGT+TGG 0.548121 8_3:-58214493 Msa1297720:CDS
GCCCTTTAAAATCACAACAT+TGG 0.553032 8_3:+58214782 None:intergenic
ATATCATGATATTTAATCTG+AGG 0.554912 8_3:+58215286 None:intergenic
AGTGGTGGAAATGCATTACA+TGG 0.555320 8_3:-58215445 Msa1297720:five_prime_UTR
TGCCAAAAGGGAAGATGGCA+AGG 0.559565 8_3:-58214431 Msa1297720:CDS
CCATTAGCCCCAGTTATGGG+TGG 0.560552 8_3:-58214526 Msa1297720:CDS
AGCCCATCAGCCCCAAATTG+CGG 0.561376 8_3:+58214562 None:intergenic
TGTTTGATTATGCTCGTGGT+GGG 0.570159 8_3:-58214585 Msa1297720:CDS
TATACTAGAACTTCATTATG+GGG 0.572286 8_3:-58214333 Msa1297720:exon
ATTCTCTATCGTTCCAATGG+AGG 0.581526 8_3:-58215369 Msa1297720:CDS
AGACAATCCCAATCTAGACT+TGG 0.587589 8_3:+58214456 None:intergenic
CCCATAACTGGGGCTAATGG+GGG 0.595547 8_3:+58214529 None:intergenic
GCTCTGTTTGATTATGCTCG+TGG 0.617447 8_3:-58214589 Msa1297720:CDS
GGAACTGAAATGCTGCTACA+GGG 0.624888 8_3:-58214839 Msa1297720:CDS
GTGTAACCTATTATTACACA+TGG 0.631481 8_3:+58214760 None:intergenic
AGCAAAACCACCCATAACTG+GGG 0.696608 8_3:+58214519 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATACACAATAAAAAAAT+CGG + chr8_3:58214285-58214304 None:intergenic 10.0%
!! ATTATACACAATAAAAAAAT+CGG + chr8_3:58214285-58214304 None:intergenic 10.0%
!! TTACTTTATGAAAACAAATA+AGG - chr8_3:58213930-58213949 Msa1297720:three_prime_UTR 15.0%
!!! TTTAAATTTGAAAAAGTATC+TGG - chr8_3:58214392-58214411 Msa1297720:CDS 15.0%
!! TTACTTTATGAAAACAAATA+AGG - chr8_3:58213930-58213949 Msa1297720:three_prime_UTR 15.0%
!!! TTTAAATTTGAAAAAGTATC+TGG - chr8_3:58214392-58214411 Msa1297720:CDS 15.0%
!!! TGAATAGTGTTAATTAGTTT+TGG - chr8_3:58214003-58214022 Msa1297720:three_prime_UTR 20.0%
!! ATATCATGATATTTAATCTG+AGG + chr8_3:58214141-58214160 None:intergenic 20.0%
!!! GTTAACAAAACATTTTTGAA+AGG - chr8_3:58214186-58214205 Msa1297720:three_prime_UTR 20.0%
!!! TTTCATAGTAGTTTAAAACA+TGG + chr8_3:58214224-58214243 None:intergenic 20.0%
!! TGAATATGTTACTACTATTT+AGG - chr8_3:58214248-58214267 Msa1297720:three_prime_UTR 20.0%
!! CAATAAAAAAATCGGATAAA+CGG + chr8_3:58214277-58214296 None:intergenic 20.0%
!!! GTTATATCAGTTTATCATTT+TGG + chr8_3:58214495-58214514 None:intergenic 20.0%
!! TATTTAATGTTATCATCCTT+AGG - chr8_3:58214518-58214537 Msa1297720:CDS 20.0%
!!! TTGATGCATTTCTATTTTAT+TGG - chr8_3:58214758-58214777 Msa1297720:CDS 20.0%
!!! TGATGCATTTCTATTTTATT+GGG - chr8_3:58214759-58214778 Msa1297720:CDS 20.0%
!! TTATACTAGAACTTCATTAT+GGG - chr8_3:58215090-58215109 Msa1297720:intron 20.0%
!! AAATTCAAATTCATCAGTAT+TGG + chr8_3:58215130-58215149 None:intergenic 20.0%
!!! TGAATAGTGTTAATTAGTTT+TGG - chr8_3:58214003-58214022 Msa1297720:three_prime_UTR 20.0%
!! ATATCATGATATTTAATCTG+AGG + chr8_3:58214141-58214160 None:intergenic 20.0%
!!! GTTAACAAAACATTTTTGAA+AGG - chr8_3:58214186-58214205 Msa1297720:three_prime_UTR 20.0%
!!! TTTCATAGTAGTTTAAAACA+TGG + chr8_3:58214224-58214243 None:intergenic 20.0%
!! TGAATATGTTACTACTATTT+AGG - chr8_3:58214248-58214267 Msa1297720:three_prime_UTR 20.0%
!! CAATAAAAAAATCGGATAAA+CGG + chr8_3:58214277-58214296 None:intergenic 20.0%
!!! GTTATATCAGTTTATCATTT+TGG + chr8_3:58214495-58214514 None:intergenic 20.0%
!! TATTTAATGTTATCATCCTT+AGG - chr8_3:58214518-58214537 Msa1297720:CDS 20.0%
!!! TTGATGCATTTCTATTTTAT+TGG - chr8_3:58214758-58214777 Msa1297720:CDS 20.0%
!!! TGATGCATTTCTATTTTATT+GGG - chr8_3:58214759-58214778 Msa1297720:CDS 20.0%
!! TTATACTAGAACTTCATTAT+GGG - chr8_3:58215090-58215109 Msa1297720:intron 20.0%
!! AAATTCAAATTCATCAGTAT+TGG + chr8_3:58215130-58215149 None:intergenic 20.0%
! AACAAATAAGGATAAGATGA+TGG - chr8_3:58213942-58213961 Msa1297720:three_prime_UTR 25.0%
! ACAAGTCCATATTGTTTATT+TGG - chr8_3:58214081-58214100 Msa1297720:three_prime_UTR 25.0%
! TTCCAACCAAATAAACAATA+TGG + chr8_3:58214090-58214109 None:intergenic 25.0%
!!! GTATCTGACTAAATTAGTTT+TGG - chr8_3:58214339-58214358 Msa1297720:exon 25.0%
!! TTTGGAATTCCTCTTAATTA+TGG - chr8_3:58214357-58214376 Msa1297720:CDS 25.0%
! AAATCTACACCATAATTAAG+AGG + chr8_3:58214369-58214388 None:intergenic 25.0%
!! ACCAATGTTGTGATTTTAAA+GGG - chr8_3:58214641-58214660 Msa1297720:CDS 25.0%
!! TAGTATAAGCTTGCAATTTT+GGG + chr8_3:58215078-58215097 None:intergenic 25.0%
! CTTATACTAGAACTTCATTA+TGG - chr8_3:58215089-58215108 Msa1297720:intron 25.0%
! TATACTAGAACTTCATTATG+GGG - chr8_3:58215091-58215110 Msa1297720:intron 25.0%
! ACAAATCACATACTATTTCA+TGG + chr8_3:58215359-58215378 None:intergenic 25.0%
! AACAAATAAGGATAAGATGA+TGG - chr8_3:58213942-58213961 Msa1297720:three_prime_UTR 25.0%
! ACAAGTCCATATTGTTTATT+TGG - chr8_3:58214081-58214100 Msa1297720:three_prime_UTR 25.0%
! TTCCAACCAAATAAACAATA+TGG + chr8_3:58214090-58214109 None:intergenic 25.0%
!!! GTATCTGACTAAATTAGTTT+TGG - chr8_3:58214339-58214358 Msa1297720:exon 25.0%
!! TTTGGAATTCCTCTTAATTA+TGG - chr8_3:58214357-58214376 Msa1297720:CDS 25.0%
! AAATCTACACCATAATTAAG+AGG + chr8_3:58214369-58214388 None:intergenic 25.0%
!! ACCAATGTTGTGATTTTAAA+GGG - chr8_3:58214641-58214660 Msa1297720:CDS 25.0%
!! TAGTATAAGCTTGCAATTTT+GGG + chr8_3:58215078-58215097 None:intergenic 25.0%
! CTTATACTAGAACTTCATTA+TGG - chr8_3:58215089-58215108 Msa1297720:intron 25.0%
! TATACTAGAACTTCATTATG+GGG - chr8_3:58215091-58215110 Msa1297720:intron 25.0%
! ACAAATCACATACTATTTCA+TGG + chr8_3:58215359-58215378 None:intergenic 25.0%
!! ATGGATGAATTGTGTTTTAG+TGG - chr8_3:58213961-58213980 Msa1297720:three_prime_UTR 30.0%
!!! TAATTAGTTTTGGTCATCTG+CGG - chr8_3:58214013-58214032 Msa1297720:three_prime_UTR 30.0%
GTCCATATTGTTTATTTGGT+TGG - chr8_3:58214085-58214104 Msa1297720:three_prime_UTR 30.0%
TGTTTATTTGGTTGGAACAT+AGG - chr8_3:58214093-58214112 Msa1297720:three_prime_UTR 30.0%
ACAAATACATGTAAAGCCTA+AGG + chr8_3:58214537-58214556 None:intergenic 30.0%
!! GGTTTGACAAAATTTTGATC+AGG - chr8_3:58214559-58214578 Msa1297720:CDS 30.0%
!! GACAAAATTTTGATCAGGTA+AGG - chr8_3:58214564-58214583 Msa1297720:CDS 30.0%
!! CTTTAAAATCACAACATTGG+TGG + chr8_3:58214642-58214661 None:intergenic 30.0%
! CACCAATGTTGTGATTTTAA+AGG - chr8_3:58214640-58214659 Msa1297720:CDS 30.0%
GTGTAACCTATTATTACACA+TGG + chr8_3:58214667-58214686 None:intergenic 30.0%
!!! TATTTTTGGTGATGAGTCTA+GGG - chr8_3:58215020-58215039 Msa1297720:intron 30.0%
! AGTATAAGCTTGCAATTTTG+GGG + chr8_3:58215077-58215096 None:intergenic 30.0%
! CTAGTATAAGCTTGCAATTT+TGG + chr8_3:58215079-58215098 None:intergenic 30.0%
CTTGATCCAAAAGTCTAAAT+CGG + chr8_3:58215185-58215204 None:intergenic 30.0%
ATAAGTAGTTGTATCCTTCA+AGG - chr8_3:58215390-58215409 Msa1297720:CDS 30.0%
GTGTCTAATGGTCTATAATT+CGG - chr8_3:58215424-58215443 Msa1297720:five_prime_UTR 30.0%
AATGGTCTATAATTCGGATT+TGG - chr8_3:58215430-58215449 Msa1297720:five_prime_UTR 30.0%
!! ATGGATGAATTGTGTTTTAG+TGG - chr8_3:58213961-58213980 Msa1297720:three_prime_UTR 30.0%
!!! TAATTAGTTTTGGTCATCTG+CGG - chr8_3:58214013-58214032 Msa1297720:three_prime_UTR 30.0%
GTCCATATTGTTTATTTGGT+TGG - chr8_3:58214085-58214104 Msa1297720:three_prime_UTR 30.0%
TGTTTATTTGGTTGGAACAT+AGG - chr8_3:58214093-58214112 Msa1297720:three_prime_UTR 30.0%
ACAAATACATGTAAAGCCTA+AGG + chr8_3:58214537-58214556 None:intergenic 30.0%
!! GGTTTGACAAAATTTTGATC+AGG - chr8_3:58214559-58214578 Msa1297720:CDS 30.0%
!! GACAAAATTTTGATCAGGTA+AGG - chr8_3:58214564-58214583 Msa1297720:CDS 30.0%
!! CTTTAAAATCACAACATTGG+TGG + chr8_3:58214642-58214661 None:intergenic 30.0%
! CACCAATGTTGTGATTTTAA+AGG - chr8_3:58214640-58214659 Msa1297720:CDS 30.0%
GTGTAACCTATTATTACACA+TGG + chr8_3:58214667-58214686 None:intergenic 30.0%
!!! TATTTTTGGTGATGAGTCTA+GGG - chr8_3:58215020-58215039 Msa1297720:intron 30.0%
! AGTATAAGCTTGCAATTTTG+GGG + chr8_3:58215077-58215096 None:intergenic 30.0%
! CTAGTATAAGCTTGCAATTT+TGG + chr8_3:58215079-58215098 None:intergenic 30.0%
CTTGATCCAAAAGTCTAAAT+CGG + chr8_3:58215185-58215204 None:intergenic 30.0%
ATAAGTAGTTGTATCCTTCA+AGG - chr8_3:58215390-58215409 Msa1297720:CDS 30.0%
GTGTCTAATGGTCTATAATT+CGG - chr8_3:58215424-58215443 Msa1297720:five_prime_UTR 30.0%
AATGGTCTATAATTCGGATT+TGG - chr8_3:58215430-58215449 Msa1297720:five_prime_UTR 30.0%
!!! GATGAATTGTGTTTTAGTGG+TGG - chr8_3:58213964-58213983 Msa1297720:three_prime_UTR 35.0%
CAAATTCTCTATCGTTCCAA+TGG - chr8_3:58214052-58214071 Msa1297720:three_prime_UTR 35.0%
AGGCTTTACATGTATTTGTG+TGG - chr8_3:58214538-58214557 Msa1297720:CDS 35.0%
!! GCCCTTTAAAATCACAACAT+TGG + chr8_3:58214645-58214664 None:intergenic 35.0%
AAAGGGCCATGTGTAATAAT+AGG - chr8_3:58214658-58214677 Msa1297720:CDS 35.0%
!! ACAGACAACTCTTTCAAGTT+TGG - chr8_3:58214685-58214704 Msa1297720:CDS 35.0%
! TGAACCAATAATTTTGCCCA+AGG - chr8_3:58214795-58214814 Msa1297720:CDS 35.0%
!!! CTATTTTTGGTGATGAGTCT+AGG - chr8_3:58215019-58215038 Msa1297720:intron 35.0%
TAGAACTTCATTATGGGGTA+AGG - chr8_3:58215096-58215115 Msa1297720:intron 35.0%
!!! TTGTCACCGATTTAGACTTT+TGG - chr8_3:58215176-58215195 Msa1297720:intron 35.0%
ATGTGATTGTACACATCGTA+AGG - chr8_3:58215271-58215290 Msa1297720:CDS 35.0%
GTATGTAAATGCGTGTCTAA+TGG - chr8_3:58215412-58215431 Msa1297720:five_prime_UTR 35.0%
!!! GATGAATTGTGTTTTAGTGG+TGG - chr8_3:58213964-58213983 Msa1297720:three_prime_UTR 35.0%
CAAATTCTCTATCGTTCCAA+TGG - chr8_3:58214052-58214071 Msa1297720:three_prime_UTR 35.0%
AGGCTTTACATGTATTTGTG+TGG - chr8_3:58214538-58214557 Msa1297720:CDS 35.0%
!! GCCCTTTAAAATCACAACAT+TGG + chr8_3:58214645-58214664 None:intergenic 35.0%
AAAGGGCCATGTGTAATAAT+AGG - chr8_3:58214658-58214677 Msa1297720:CDS 35.0%
!! ACAGACAACTCTTTCAAGTT+TGG - chr8_3:58214685-58214704 Msa1297720:CDS 35.0%
! TGAACCAATAATTTTGCCCA+AGG - chr8_3:58214795-58214814 Msa1297720:CDS 35.0%
!!! CTATTTTTGGTGATGAGTCT+AGG - chr8_3:58215019-58215038 Msa1297720:intron 35.0%
TAGAACTTCATTATGGGGTA+AGG - chr8_3:58215096-58215115 Msa1297720:intron 35.0%
!!! TTGTCACCGATTTAGACTTT+TGG - chr8_3:58215176-58215195 Msa1297720:intron 35.0%
ATGTGATTGTACACATCGTA+AGG - chr8_3:58215271-58215290 Msa1297720:CDS 35.0%
GTATGTAAATGCGTGTCTAA+TGG - chr8_3:58215412-58215431 Msa1297720:five_prime_UTR 35.0%
! AGTGGTGGAAATGCATTACA+TGG - chr8_3:58213979-58213998 Msa1297720:three_prime_UTR 40.0%
ATTCTCTATCGTTCCAATGG+AGG - chr8_3:58214055-58214074 Msa1297720:three_prime_UTR 40.0%
!! ATGGACTTGTTTTCCTCCAT+TGG + chr8_3:58214071-58214090 None:intergenic 40.0%
! TTTGGTGCATTTAACCCTGA+AGG - chr8_3:58214703-58214722 Msa1297720:CDS 40.0%
CTGTGCTTCTATATCCTTCA+GGG + chr8_3:58214720-58214739 None:intergenic 40.0%
TCTGTGCTTCTATATCCTTC+AGG + chr8_3:58214721-58214740 None:intergenic 40.0%
CCAACCTTGGGCAAAATTAT+TGG + chr8_3:58214802-58214821 None:intergenic 40.0%
! CCAATAATTTTGCCCAAGGT+TGG - chr8_3:58214799-58214818 Msa1297720:CDS 40.0%
! ATAATTTTGCCCAAGGTTGG+TGG - chr8_3:58214802-58214821 Msa1297720:CDS 40.0%
TGTTTGATTATGCTCGTGGT+GGG - chr8_3:58214839-58214858 Msa1297720:CDS 40.0%
CCAACACCAGAATTAGTATC+AGG + chr8_3:58214934-58214953 None:intergenic 40.0%
CCTGATACTAATTCTGGTGT+TGG - chr8_3:58214931-58214950 Msa1297720:intron 40.0%
AGACAAGCCAAGTCTAGATT+GGG - chr8_3:58214961-58214980 Msa1297720:intron 40.0%
AGACAATCCCAATCTAGACT+TGG + chr8_3:58214971-58214990 None:intergenic 40.0%
TGGGATTGTCTTATGCCAAA+AGG - chr8_3:58214980-58214999 Msa1297720:intron 40.0%
GGGATTGTCTTATGCCAAAA+GGG - chr8_3:58214981-58215000 Msa1297720:intron 40.0%
TCTTATGCCAAAAGGGAAGA+TGG - chr8_3:58214988-58215007 Msa1297720:intron 40.0%
! GATGGCAAGGAGTCTATTTT+TGG - chr8_3:58215006-58215025 Msa1297720:intron 40.0%
CACGCATTTACATACCTTGA+AGG + chr8_3:58215407-58215426 None:intergenic 40.0%
! AGTGGTGGAAATGCATTACA+TGG - chr8_3:58213979-58213998 Msa1297720:three_prime_UTR 40.0%
ATTCTCTATCGTTCCAATGG+AGG - chr8_3:58214055-58214074 Msa1297720:three_prime_UTR 40.0%
!! ATGGACTTGTTTTCCTCCAT+TGG + chr8_3:58214071-58214090 None:intergenic 40.0%
! TTTGGTGCATTTAACCCTGA+AGG - chr8_3:58214703-58214722 Msa1297720:CDS 40.0%
CTGTGCTTCTATATCCTTCA+GGG + chr8_3:58214720-58214739 None:intergenic 40.0%
TCTGTGCTTCTATATCCTTC+AGG + chr8_3:58214721-58214740 None:intergenic 40.0%
CCAACCTTGGGCAAAATTAT+TGG + chr8_3:58214802-58214821 None:intergenic 40.0%
! CCAATAATTTTGCCCAAGGT+TGG - chr8_3:58214799-58214818 Msa1297720:CDS 40.0%
! ATAATTTTGCCCAAGGTTGG+TGG - chr8_3:58214802-58214821 Msa1297720:CDS 40.0%
TGTTTGATTATGCTCGTGGT+GGG - chr8_3:58214839-58214858 Msa1297720:CDS 40.0%
CCAACACCAGAATTAGTATC+AGG + chr8_3:58214934-58214953 None:intergenic 40.0%
CCTGATACTAATTCTGGTGT+TGG - chr8_3:58214931-58214950 Msa1297720:intron 40.0%
AGACAAGCCAAGTCTAGATT+GGG - chr8_3:58214961-58214980 Msa1297720:intron 40.0%
AGACAATCCCAATCTAGACT+TGG + chr8_3:58214971-58214990 None:intergenic 40.0%
TGGGATTGTCTTATGCCAAA+AGG - chr8_3:58214980-58214999 Msa1297720:intron 40.0%
GGGATTGTCTTATGCCAAAA+GGG - chr8_3:58214981-58215000 Msa1297720:intron 40.0%
TCTTATGCCAAAAGGGAAGA+TGG - chr8_3:58214988-58215007 Msa1297720:intron 40.0%
! GATGGCAAGGAGTCTATTTT+TGG - chr8_3:58215006-58215025 Msa1297720:intron 40.0%
CACGCATTTACATACCTTGA+AGG + chr8_3:58215407-58215426 None:intergenic 40.0%
!!! TAGTTTTGGTCATCTGCGGA+TGG - chr8_3:58214017-58214036 Msa1297720:three_prime_UTR 45.0%
AGGAACTGAAATGCTGCTAC+AGG - chr8_3:58214584-58214603 Msa1297720:CDS 45.0%
GGAACTGAAATGCTGCTACA+GGG - chr8_3:58214585-58214604 Msa1297720:CDS 45.0%
TGCTACAGGGCAACAATTGA+TGG - chr8_3:58214598-58214617 Msa1297720:CDS 45.0%
GCTCTGTTTGATTATGCTCG+TGG - chr8_3:58214835-58214854 Msa1297720:CDS 45.0%
CTGTTTGATTATGCTCGTGG+TGG - chr8_3:58214838-58214857 Msa1297720:CDS 45.0%
AGCAAAACCACCCATAACTG+GGG + chr8_3:58214908-58214927 None:intergenic 45.0%
CAGCAAAACCACCCATAACT+GGG + chr8_3:58214909-58214928 None:intergenic 45.0%
!! CAGTTATGGGTGGTTTTGCT+GGG - chr8_3:58214908-58214927 Msa1297720:intron 45.0%
GAGACAAGCCAAGTCTAGAT+TGG - chr8_3:58214960-58214979 Msa1297720:intron 45.0%
!!! TAGTTTTGGTCATCTGCGGA+TGG - chr8_3:58214017-58214036 Msa1297720:three_prime_UTR 45.0%
AGGAACTGAAATGCTGCTAC+AGG - chr8_3:58214584-58214603 Msa1297720:CDS 45.0%
GGAACTGAAATGCTGCTACA+GGG - chr8_3:58214585-58214604 Msa1297720:CDS 45.0%
TGCTACAGGGCAACAATTGA+TGG - chr8_3:58214598-58214617 Msa1297720:CDS 45.0%
GCTCTGTTTGATTATGCTCG+TGG - chr8_3:58214835-58214854 Msa1297720:CDS 45.0%
CTGTTTGATTATGCTCGTGG+TGG - chr8_3:58214838-58214857 Msa1297720:CDS 45.0%
AGCAAAACCACCCATAACTG+GGG + chr8_3:58214908-58214927 None:intergenic 45.0%
CAGCAAAACCACCCATAACT+GGG + chr8_3:58214909-58214928 None:intergenic 45.0%
!! CAGTTATGGGTGGTTTTGCT+GGG - chr8_3:58214908-58214927 Msa1297720:intron 45.0%
GAGACAAGCCAAGTCTAGAT+TGG - chr8_3:58214960-58214979 Msa1297720:intron 45.0%
ACCCATAACTGGGGCTAATG+GGG + chr8_3:58214899-58214918 None:intergenic 50.0%
CACCCATAACTGGGGCTAAT+GGG + chr8_3:58214900-58214919 None:intergenic 50.0%
CCAGCAAAACCACCCATAAC+TGG + chr8_3:58214910-58214929 None:intergenic 50.0%
!! CCAGTTATGGGTGGTTTTGC+TGG - chr8_3:58214907-58214926 Msa1297720:intron 50.0%
GCTGGGCCTGATACTAATTC+TGG - chr8_3:58214925-58214944 Msa1297720:intron 50.0%
TGCCAAAAGGGAAGATGGCA+AGG - chr8_3:58214993-58215012 Msa1297720:intron 50.0%
! CTCCTTGCCATCTTCCCTTT+TGG + chr8_3:58214998-58215017 None:intergenic 50.0%
ACCCATAACTGGGGCTAATG+GGG + chr8_3:58214899-58214918 None:intergenic 50.0%
CACCCATAACTGGGGCTAAT+GGG + chr8_3:58214900-58214919 None:intergenic 50.0%
CCAGCAAAACCACCCATAAC+TGG + chr8_3:58214910-58214929 None:intergenic 50.0%
!! CCAGTTATGGGTGGTTTTGC+TGG - chr8_3:58214907-58214926 Msa1297720:intron 50.0%
GCTGGGCCTGATACTAATTC+TGG - chr8_3:58214925-58214944 Msa1297720:intron 50.0%
TGCCAAAAGGGAAGATGGCA+AGG - chr8_3:58214993-58215012 Msa1297720:intron 50.0%
! CTCCTTGCCATCTTCCCTTT+TGG + chr8_3:58214998-58215017 None:intergenic 50.0%
AGCCCATCAGCCCCAAATTG+CGG + chr8_3:58214865-58214884 None:intergenic 55.0%
CCCATAACTGGGGCTAATGG+GGG + chr8_3:58214898-58214917 None:intergenic 55.0%
CCCCCATTAGCCCCAGTTAT+GGG - chr8_3:58214895-58214914 Msa1297720:intron 55.0%
CCACCCATAACTGGGGCTAA+TGG + chr8_3:58214901-58214920 None:intergenic 55.0%
CCATTAGCCCCAGTTATGGG+TGG - chr8_3:58214898-58214917 Msa1297720:intron 55.0%
AGCCCATCAGCCCCAAATTG+CGG + chr8_3:58214865-58214884 None:intergenic 55.0%
CCCATAACTGGGGCTAATGG+GGG + chr8_3:58214898-58214917 None:intergenic 55.0%
CCCCCATTAGCCCCAGTTAT+GGG - chr8_3:58214895-58214914 Msa1297720:intron 55.0%
CCACCCATAACTGGGGCTAA+TGG + chr8_3:58214901-58214920 None:intergenic 55.0%
CCATTAGCCCCAGTTATGGG+TGG - chr8_3:58214898-58214917 Msa1297720:intron 55.0%
!! TTGCCCAAGGTTGGTGGCAG+TGG - chr8_3:58214808-58214827 Msa1297720:CDS 60.0%
GCACCACTGCCACCAACCTT+GGG + chr8_3:58214814-58214833 None:intergenic 60.0%
TGCACCACTGCCACCAACCT+TGG + chr8_3:58214815-58214834 None:intergenic 60.0%
!! CTCGTGGTGGGCCGCAATTT+GGG - chr8_3:58214851-58214870 Msa1297720:intron 60.0%
!! TCGTGGTGGGCCGCAATTTG+GGG - chr8_3:58214852-58214871 Msa1297720:intron 60.0%
! GGCCGCAATTTGGGGCTGAT+GGG - chr8_3:58214860-58214879 Msa1297720:intron 60.0%
!! GGGGCTGATGGGCTTCTCAT+CGG - chr8_3:58214871-58214890 Msa1297720:intron 60.0%
!! GGGCTGATGGGCTTCTCATC+GGG - chr8_3:58214872-58214891 Msa1297720:intron 60.0%
GCCCCCATTAGCCCCAGTTA+TGG - chr8_3:58214894-58214913 Msa1297720:intron 60.0%
!! TTGCCCAAGGTTGGTGGCAG+TGG - chr8_3:58214808-58214827 Msa1297720:CDS 60.0%
GCACCACTGCCACCAACCTT+GGG + chr8_3:58214814-58214833 None:intergenic 60.0%
TGCACCACTGCCACCAACCT+TGG + chr8_3:58214815-58214834 None:intergenic 60.0%
!! CTCGTGGTGGGCCGCAATTT+GGG - chr8_3:58214851-58214870 Msa1297720:intron 60.0%
!! TCGTGGTGGGCCGCAATTTG+GGG - chr8_3:58214852-58214871 Msa1297720:intron 60.0%
! GGCCGCAATTTGGGGCTGAT+GGG - chr8_3:58214860-58214879 Msa1297720:intron 60.0%
!! GGGGCTGATGGGCTTCTCAT+CGG - chr8_3:58214871-58214890 Msa1297720:intron 60.0%
!! GGGCTGATGGGCTTCTCATC+GGG - chr8_3:58214872-58214891 Msa1297720:intron 60.0%
GCCCCCATTAGCCCCAGTTA+TGG - chr8_3:58214894-58214913 Msa1297720:intron 60.0%
!! GCTCGTGGTGGGCCGCAATT+TGG - chr8_3:58214850-58214869 Msa1297720:intron 65.0%
! GGGCCGCAATTTGGGGCTGA+TGG - chr8_3:58214859-58214878 Msa1297720:intron 65.0%
!! GCTCGTGGTGGGCCGCAATT+TGG - chr8_3:58214850-58214869 Msa1297720:intron 65.0%
! GGGCCGCAATTTGGGGCTGA+TGG - chr8_3:58214859-58214878 Msa1297720:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 58213925 58215521 58213925 ID=Msa1297720;Name=Msa1297720
chr8_3 mRNA 58213925 58215521 58213925 ID=Msa1297720-mRNA-1;Parent=Msa1297720;Name=Msa1297720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|1|1|2|423|229
chr8_3 exon 58213925 58214865 58213925 ID=Msa1297720-mRNA-1:exon:16674;Parent=Msa1297720-mRNA-1
chr8_3 exon 58215239 58215521 58215239 ID=Msa1297720-mRNA-1:exon:16673;Parent=Msa1297720-mRNA-1
chr8_3 five_prime_UTR 58215411 58215521 58215411 ID=Msa1297720-mRNA-1:five_prime_utr;Parent=Msa1297720-mRNA-1
chr8_3 CDS 58215239 58215410 58215239 ID=Msa1297720-mRNA-1:cds;Parent=Msa1297720-mRNA-1
chr8_3 CDS 58214348 58214865 58214348 ID=Msa1297720-mRNA-1:cds;Parent=Msa1297720-mRNA-1
chr8_3 three_prime_UTR 58213925 58214347 58213925 ID=Msa1297720-mRNA-1:three_prime_utr;Parent=Msa1297720-mRNA-1
Gene Sequence

>Msa1297720

ATGGCATCTTGTATCTCAAATTCTCTATCGTTCCAATGGAGGAAAACAAGTCCATATTGTTTATTTGGTTGGAACATAGGCAGAAAGAGAGTTGATGACAAACCTCAGATTAAATATCATGATATTGATCTCACTTTCTCAACTTCTCTAGTTAACAAAACATTTTTGAAAGGTAAGGAACTGAAATGCTGCTACAGGGCAACAATTGATGGATTTAGTGCAACAAATTTCCACCAATGTTGTGATTTTAAAGGGCCATGTGTAATAATAGGTTACACAGACAACTCTTTCAAGTTTGGTGCATTTAACCCTGAAGGATATAGAAGCACAGATGATTACTATGAAACATTTGATGCATTTCTATTTTATTGGGTAGAAAATAAAAATGAACCAATAATTTTGCCCAAGGTTGGTGGCAGTGGTGCAGCTCTGTTTGATTATGCTCGTGGTGGGCCGCAATTTGGGGCTGATGGGCTTCTCATCGGGCCCCCATTAGCCCCAGTTATGGGTGGTTTTGCTGGGCCTGATACTAATTCTGGTGTTGGTGACTTGAGACAAGCCAAGTCTAGATTGGGATTGTCTTATGCCAAAAGGGAAGATGGCAAGGAGTCTATTTTTGGTGATGAGTCTAGGGCAACTATTCAAGAAGTAGAAGTGTTTTGTAGCCCCAAAATTGCAAGCTTATACTAG

Protein sequence

>Msa1297720

MASCISNSLSFQWRKTSPYCLFGWNIGRKRVDDKPQIKYHDIDLTFSTSLVNKTFLKGKELKCCYRATIDGFSATNFHQCCDFKGPCVIIGYTDNSFKFGAFNPEGYRSTDDYYETFDAFLFYWVENKNEPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGVGDLRQAKSRLGLSYAKREDGKESIFGDESRATIQEVEVFCSPKIASLY*