Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862040 | XP_003617436.2 | 94.792 | 288 | 13 | 2 | 1 | 288 | 1 | 286 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862040 | G7KD67 | 94.792 | 288 | 13 | 2 | 1 | 288 | 1 | 286 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006050 | Msa0862040 | 0.828352 | 9.427842e-55 | -8.615850e-47 |
| Msa0008250 | Msa0862040 | 0.801385 | 9.232295e-49 | -8.615850e-47 |
| Msa0024330 | Msa0862040 | 0.807721 | 4.401047e-50 | -8.615850e-47 |
| Msa0028050 | Msa0862040 | 0.805436 | 1.335887e-49 | -8.615850e-47 |
| Msa0028450 | Msa0862040 | 0.805891 | 1.072239e-49 | -8.615850e-47 |
| Msa0030400 | Msa0862040 | 0.801717 | 7.893579e-49 | -8.615850e-47 |
| Msa0044250 | Msa0862040 | 0.802765 | 4.803982e-49 | -8.615850e-47 |
| Msa0044320 | Msa0862040 | 0.807263 | 5.505901e-50 | -8.615850e-47 |
| Msa0056160 | Msa0862040 | 0.821619 | 3.666184e-53 | -8.615850e-47 |
| Msa0082250 | Msa0862040 | 0.800904 | 1.158013e-48 | -8.615850e-47 |
| Msa0092750 | Msa0862040 | 0.823716 | 1.192571e-53 | -8.615850e-47 |
| Msa0094240 | Msa0862040 | 0.814547 | 1.457338e-51 | -8.615850e-47 |
| Msa0094670 | Msa0862040 | 0.821333 | 4.268432e-53 | -8.615850e-47 |
| Msa0094990 | Msa0862040 | 0.806315 | 8.730545e-50 | -8.615850e-47 |
| Msa0110500 | Msa0862040 | 0.807668 | 4.517459e-50 | -8.615850e-47 |
| Msa0113910 | Msa0862040 | 0.803412 | 3.529487e-49 | -8.615850e-47 |
| Msa0114960 | Msa0862040 | 0.812618 | 3.873043e-51 | -8.615850e-47 |
| Msa0115950 | Msa0862040 | 0.825752 | 3.948599e-54 | -8.615850e-47 |
| Msa0116260 | Msa0862040 | 0.805620 | 1.222816e-49 | -8.615850e-47 |
| Msa0116950 | Msa0862040 | 0.807186 | 5.716155e-50 | -8.615850e-47 |
| Msa0118250 | Msa0862040 | 0.836526 | 8.889573e-57 | -8.615850e-47 |
| Msa0625310 | Msa0862040 | 0.818386 | 2.014317e-52 | -8.615850e-47 |
| Msa0626900 | Msa0862040 | 0.808069 | 3.712750e-50 | -8.615850e-47 |
| Msa0635130 | Msa0862040 | 0.800520 | 1.387095e-48 | -8.615850e-47 |
| Msa0635350 | Msa0862040 | 0.827812 | 1.272242e-54 | -8.615850e-47 |
| Msa0638040 | Msa0862040 | 0.827396 | 1.600988e-54 | -8.615850e-47 |
| Msa0639880 | Msa0862040 | 0.805034 | 1.621764e-49 | -8.615850e-47 |
| Msa0648410 | Msa0862040 | 0.802324 | 5.921347e-49 | -8.615850e-47 |
| Msa0657300 | Msa0862040 | 0.802104 | 6.572000e-49 | -8.615850e-47 |
| Msa0672350 | Msa0862040 | 0.831059 | 2.068255e-55 | -8.615850e-47 |
| Msa0677110 | Msa0862040 | 0.825550 | 4.408673e-54 | -8.615850e-47 |
| Msa0679780 | Msa0862040 | 0.816962 | 4.218636e-52 | -8.615850e-47 |
| Msa0688760 | Msa0862040 | 0.847129 | 1.405807e-59 | -8.615850e-47 |
| Msa0690530 | Msa0862040 | 0.809506 | 1.829772e-50 | -8.615850e-47 |
| Msa0690920 | Msa0862040 | 0.808812 | 2.577088e-50 | -8.615850e-47 |
| Msa0692910 | Msa0862040 | 0.824891 | 6.312406e-54 | -8.615850e-47 |
| Msa0741710 | Msa0862040 | 0.814062 | 1.864996e-51 | -8.615850e-47 |
| Msa0760950 | Msa0862040 | 0.810700 | 1.011561e-50 | -8.615850e-47 |
| Msa0766540 | Msa0862040 | 0.806144 | 9.488193e-50 | -8.615850e-47 |
| Msa0772400 | Msa0862040 | 0.809901 | 1.504895e-50 | -8.615850e-47 |
| Msa0774560 | Msa0862040 | 0.809463 | 1.868492e-50 | -8.615850e-47 |
| Msa0803220 | Msa0862040 | 0.816335 | 5.832286e-52 | -8.615850e-47 |
| Msa0803930 | Msa0862040 | 0.804946 | 1.692144e-49 | -8.615850e-47 |
| Msa0813630 | Msa0862040 | 0.825555 | 4.396810e-54 | -8.615850e-47 |
| Msa0822930 | Msa0862040 | 0.995199 | 6.046790e-214 | -8.615850e-47 |
| Msa0829110 | Msa0862040 | 0.826352 | 2.844079e-54 | -8.615850e-47 |
| Msa0829430 | Msa0862040 | 0.850652 | 1.478626e-60 | -8.615850e-47 |
| Msa0829570 | Msa0862040 | 0.827261 | 1.724541e-54 | -8.615850e-47 |
| Msa0120980 | Msa0862040 | 0.803818 | 2.907032e-49 | -8.615850e-47 |
| Msa0124070 | Msa0862040 | 0.801843 | 7.437383e-49 | -8.615850e-47 |
| Msa0127060 | Msa0862040 | 0.808236 | 3.420423e-50 | -8.615850e-47 |
| Msa0131390 | Msa0862040 | 0.805415 | 1.349911e-49 | -8.615850e-47 |
| Msa0147990 | Msa0862040 | 0.812647 | 3.816119e-51 | -8.615850e-47 |
| Msa0160470 | Msa0862040 | 0.804066 | 2.582332e-49 | -8.615850e-47 |
| Msa0163410 | Msa0862040 | 0.800628 | 1.318277e-48 | -8.615850e-47 |
| Msa0177490 | Msa0862040 | 0.808432 | 3.105494e-50 | -8.615850e-47 |
| Msa0197600 | Msa0862040 | 0.811973 | 5.354653e-51 | -8.615850e-47 |
| Msa0206600 | Msa0862040 | 0.811157 | 8.054338e-51 | -8.615850e-47 |
| Msa0213020 | Msa0862040 | 0.806342 | 8.620274e-50 | -8.615850e-47 |
| Msa0228130 | Msa0862040 | 0.802876 | 4.556764e-49 | -8.615850e-47 |
| Msa0228180 | Msa0862040 | 0.809259 | 2.067451e-50 | -8.615850e-47 |
| Msa0235180 | Msa0862040 | 0.802874 | 4.561463e-49 | -8.615850e-47 |
| Msa0371870 | Msa0862040 | 0.802908 | 4.488292e-49 | -8.615850e-47 |
| Msa0379900 | Msa0862040 | 0.800051 | 1.727796e-48 | -8.615850e-47 |
| Msa0380430 | Msa0862040 | 0.802697 | 4.960851e-49 | -8.615850e-47 |
| Msa0386390 | Msa0862040 | 0.814537 | 1.464578e-51 | -8.615850e-47 |
| Msa0390350 | Msa0862040 | 0.815383 | 9.507560e-52 | -8.615850e-47 |
| Msa0393140 | Msa0862040 | 0.826418 | 2.743081e-54 | -8.615850e-47 |
| Msa0404330 | Msa0862040 | 0.802475 | 5.512543e-49 | -8.615850e-47 |
| Msa0423590 | Msa0862040 | 0.808630 | 2.818788e-50 | -8.615850e-47 |
| Msa0423600 | Msa0862040 | 0.804316 | 2.290717e-49 | -8.615850e-47 |
| Msa0438440 | Msa0862040 | 0.806282 | 8.871449e-50 | -8.615850e-47 |
| Msa0439120 | Msa0862040 | 0.800885 | 1.168219e-48 | -8.615850e-47 |
| Msa0458790 | Msa0862040 | 0.802018 | 6.847157e-49 | -8.615850e-47 |
| Msa0459920 | Msa0862040 | 0.801480 | 8.827165e-49 | -8.615850e-47 |
| Msa0470650 | Msa0862040 | 0.825484 | 4.570965e-54 | -8.615850e-47 |
| Msa0471080 | Msa0862040 | 0.828632 | 8.070246e-55 | -8.615850e-47 |
| Msa0471890 | Msa0862040 | 0.817478 | 3.230441e-52 | -8.615850e-47 |
| Msa0475740 | Msa0862040 | 0.811764 | 5.946633e-51 | -8.615850e-47 |
| Msa0476820 | Msa0862040 | 0.822170 | 2.733923e-53 | -8.615850e-47 |
| Msa0479790 | Msa0862040 | 0.815108 | 1.094332e-51 | -8.615850e-47 |
| Msa0267130 | Msa0862040 | 0.800689 | 1.280809e-48 | -8.615850e-47 |
| Msa0272420 | Msa0862040 | 0.815532 | 8.810210e-52 | -8.615850e-47 |
| Msa0282860 | Msa0862040 | 0.831901 | 1.283813e-55 | -8.615850e-47 |
| Msa0312570 | Msa0862040 | 0.808663 | 2.772633e-50 | -8.615850e-47 |
| Msa0312780 | Msa0862040 | 0.815384 | 9.504742e-52 | -8.615850e-47 |
| Msa0314980 | Msa0862040 | 0.808640 | 2.803751e-50 | -8.615850e-47 |
| Msa0315010 | Msa0862040 | 0.815986 | 6.977815e-52 | -8.615850e-47 |
| Msa0317630 | Msa0862040 | 0.804869 | 1.755887e-49 | -8.615850e-47 |
| Msa0327900 | Msa0862040 | 0.821999 | 2.994227e-53 | -8.615850e-47 |
| Msa0338900 | Msa0862040 | 0.817823 | 2.700264e-52 | -8.615850e-47 |
| Msa0349450 | Msa0862040 | 0.801265 | 9.767725e-49 | -8.615850e-47 |
| Msa0358720 | Msa0862040 | 0.813342 | 2.687166e-51 | -8.615850e-47 |
| Msa0495510 | Msa0862040 | 0.809087 | 2.250013e-50 | -8.615850e-47 |
| Msa0500490 | Msa0862040 | 0.803187 | 3.928845e-49 | -8.615850e-47 |
| Msa0504630 | Msa0862040 | 0.806663 | 7.375153e-50 | -8.615850e-47 |
| Msa0515680 | Msa0862040 | 0.803514 | 3.361080e-49 | -8.615850e-47 |
| Msa0524050 | Msa0862040 | 0.804809 | 1.807694e-49 | -8.615850e-47 |
| Msa0528170 | Msa0862040 | 0.842845 | 2.015995e-58 | -8.615850e-47 |
| Msa0533140 | Msa0862040 | 0.832955 | 7.033442e-56 | -8.615850e-47 |
| Msa0534380 | Msa0862040 | 0.811390 | 7.169505e-51 | -8.615850e-47 |
| Msa0539400 | Msa0862040 | 0.811682 | 6.194962e-51 | -8.615850e-47 |
| Msa0540160 | Msa0862040 | 0.809641 | 1.711730e-50 | -8.615850e-47 |
| Msa0540520 | Msa0862040 | 0.874412 | 6.892847e-68 | -8.615850e-47 |
| Msa0553350 | Msa0862040 | 0.824533 | 7.664565e-54 | -8.615850e-47 |
| Msa0555980 | Msa0862040 | 0.804847 | 1.774826e-49 | -8.615850e-47 |
| Msa0565150 | Msa0862040 | 0.817929 | 2.555932e-52 | -8.615850e-47 |
| Msa0565530 | Msa0862040 | 0.826275 | 2.966294e-54 | -8.615850e-47 |
| Msa0565930 | Msa0862040 | 0.835580 | 1.544860e-56 | -8.615850e-47 |
| Msa0568810 | Msa0862040 | 0.819342 | 1.221316e-52 | -8.615850e-47 |
| Msa0581190 | Msa0862040 | 0.814638 | 1.391662e-51 | -8.615850e-47 |
| Msa0589540 | Msa0862040 | 0.839252 | 1.770695e-57 | -8.615850e-47 |
| Msa0599250 | Msa0862040 | 0.815098 | 1.100078e-51 | -8.615850e-47 |
| Msa0848780 | Msa0862040 | 0.811993 | 5.300946e-51 | -8.615850e-47 |
| Msa0862040 | Msa0868040 | 0.808789 | 2.605704e-50 | -8.615850e-47 |
| Msa0862040 | Msa0929400 | 0.843067 | 1.760010e-58 | -8.615850e-47 |
| Msa0862040 | Msa1026880 | 0.839631 | 1.411737e-57 | -8.615850e-47 |
| Msa0862040 | Msa1040030 | 0.800288 | 1.546270e-48 | -8.615850e-47 |
| Msa0862040 | Msa1044790 | 0.821191 | 4.604356e-53 | -8.615850e-47 |
| Msa0862040 | Msa1054890 | 0.814295 | 1.656925e-51 | -8.615850e-47 |
| Msa0862040 | Msa1064210 | 0.809714 | 1.650954e-50 | -8.615850e-47 |
| Msa0862040 | Msa1069440 | 0.818356 | 2.046325e-52 | -8.615850e-47 |
| Msa0862040 | Msa1072640 | 0.814853 | 1.246868e-51 | -8.615850e-47 |
| Msa0862040 | Msa1081850 | 0.807057 | 6.086703e-50 | -8.615850e-47 |
| Msa0862040 | Msa1113210 | 0.804253 | 2.360970e-49 | -8.615850e-47 |
| Msa0862040 | Msa1117280 | 0.801758 | 7.739988e-49 | -8.615850e-47 |
| Msa0862040 | Msa1117830 | 0.824737 | 6.862013e-54 | -8.615850e-47 |
| Msa0862040 | Msa1126910 | 0.822112 | 2.820152e-53 | -8.615850e-47 |
| Msa0862040 | Msa1130070 | 0.831391 | 1.714138e-55 | -8.615850e-47 |
| Msa0862040 | Msa1130650 | 0.800798 | 1.217071e-48 | -8.615850e-47 |
| Msa0862040 | Msa1130730 | 0.830866 | 2.306558e-55 | -8.615850e-47 |
| Msa0862040 | Msa1134830 | 0.802274 | 6.062412e-49 | -8.615850e-47 |
| Msa0862040 | Msa1144420 | 0.813027 | 3.151272e-51 | -8.615850e-47 |
| Msa0862040 | Msa1150250 | 0.803695 | 3.083085e-49 | -8.615850e-47 |
| Msa0862040 | Msa1157310 | 0.832038 | 1.187481e-55 | -8.615850e-47 |
| Msa0862040 | Msa1161160 | 0.814989 | 1.163413e-51 | -8.615850e-47 |
| Msa0862040 | Msa1166020 | 0.807059 | 6.079989e-50 | -8.615850e-47 |
| Msa0862040 | Msa1184640 | 0.824282 | 8.782357e-54 | -8.615850e-47 |
| Msa0862040 | Msa1193680 | 0.817029 | 4.076609e-52 | -8.615850e-47 |
| Msa0862040 | Msa1205520 | 0.818329 | 2.074919e-52 | -8.615850e-47 |
| Msa0862040 | Msa1209650 | 0.806563 | 7.742947e-50 | -8.615850e-47 |
| Msa0862040 | Msa1212740 | 0.802878 | 4.552044e-49 | -8.615850e-47 |
| Msa0862040 | Msa1213550 | 0.820361 | 7.144257e-53 | -8.615850e-47 |
| Msa0862040 | Msa1214900 | 0.804059 | 2.590542e-49 | -8.615850e-47 |
| Msa0862040 | Msa1221540 | 0.812500 | 4.110146e-51 | -8.615850e-47 |
| Msa0862040 | Msa1226880 | 0.806312 | 8.742869e-50 | -8.615850e-47 |
| Msa0862040 | Msa1230190 | 0.805122 | 1.554380e-49 | -8.615850e-47 |
| Msa0862040 | Msa1233770 | 0.805777 | 1.133364e-49 | -8.615850e-47 |
| Msa0862040 | Msa1238700 | 0.800560 | 1.361049e-48 | -8.615850e-47 |
| Msa0862040 | Msa1276080 | 0.800759 | 1.239398e-48 | -8.615850e-47 |
| Msa0862040 | Msa1280020 | 0.831235 | 1.873038e-55 | -8.615850e-47 |
| Msa0862040 | Msa1297720 | 0.823259 | 1.525255e-53 | -8.615850e-47 |
| Msa0862040 | Msa1298740 | 0.800813 | 1.208491e-48 | -8.615850e-47 |
| Msa0862040 | Msa1331400 | 0.815456 | 9.157872e-52 | -8.615850e-47 |
| Msa0862040 | Msa1334020 | 0.814697 | 1.350445e-51 | -8.615850e-47 |
| Msa0862040 | Msa1341790 | 0.833805 | 4.317601e-56 | -8.615850e-47 |
| Msa0862040 | Msa1356680 | 0.804713 | 1.893065e-49 | -8.615850e-47 |
| Msa0862040 | Msa1356730 | 0.809918 | 1.491888e-50 | -8.615850e-47 |
| Msa0862040 | Msa1361090 | 0.814096 | 1.833341e-51 | -8.615850e-47 |
| Msa0862040 | Msa1364420 | 0.816746 | 4.716655e-52 | -8.615850e-47 |
| Msa0862040 | Msa1365120 | 0.843535 | 1.320359e-58 | -8.615850e-47 |
| Msa0862040 | Msa1366400 | 0.801734 | 7.830415e-49 | -8.615850e-47 |
| Msa0862040 | Msa1368800 | 0.822052 | 2.910766e-53 | -8.615850e-47 |
| Msa0862040 | Msa1378840 | 0.835102 | 2.040517e-56 | -8.615850e-47 |
| Msa0862040 | Msa1379360 | 0.806660 | 7.384180e-50 | -8.615850e-47 |
| Msa0862040 | Msa1384980 | 0.844228 | 8.609076e-59 | -8.615850e-47 |
| Msa0862040 | Msa1386020 | 0.814122 | 1.809680e-51 | -8.615850e-47 |
| Msa0862040 | Msa1396310 | 0.801970 | 7.003077e-49 | -8.615850e-47 |
| Msa0862040 | Msa1397110 | 0.813821 | 2.108255e-51 | -8.615850e-47 |
| Msa0862040 | Msa1403900 | 0.804474 | 2.122788e-49 | -8.615850e-47 |
| Msa0862040 | Msa1408190 | 0.804892 | 1.736553e-49 | -8.615850e-47 |
| Msa0862040 | Msa1432250 | 0.800165 | 1.637846e-48 | -8.615850e-47 |
| Msa0862040 | Msa1432350 | 0.848081 | 7.691459e-60 | -8.615850e-47 |
| Msa0862040 | Msa1435990 | 0.817699 | 2.879281e-52 | -8.615850e-47 |
| Msa0862040 | Msa1448990 | 0.804337 | 2.267664e-49 | -8.615850e-47 |
| Msa0862040 | Msa1450420 | 0.824773 | 6.730359e-54 | -8.615850e-47 |
| Msa0862040 | Msa1451780 | 0.827751 | 1.315935e-54 | -8.615850e-47 |
| Msa0862040 | Msa1463500 | 0.808966 | 2.388426e-50 | -8.615850e-47 |
| Msa0862040 | Msa1465380 | 0.804241 | 2.374658e-49 | -8.615850e-47 |
| Msa0862040 | Msa1465950 | 0.800697 | 1.276298e-48 | -8.615850e-47 |
| Msa0862040 | Msa1466170 | 0.809192 | 2.136202e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862040 | MtrunA17_Chr5g0443231 | 94.792 | 288 | 13 | 2 | 1 | 288 | 1 | 286 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862040 | AT1G06510.1 | 44.674 | 291 | 141 | 5 | 8 | 297 | 1 | 272 | 9.15e-73 | 226 |
Find 77 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACGCGATTGGAATTTA+TGG | 0.179941 | 5_4:-61615512 | None:intergenic |
| TTTATTAGAGTTTATAAATA+TGG | 0.232154 | 5_4:+61615454 | Msa0862040:three_prime_UTR |
| TGCCGAATTTCATCGTATTA+AGG | 0.289250 | 5_4:-61614692 | None:intergenic |
| TGTTGCCACCTGGAATTCTT+TGG | 0.293734 | 5_4:-61614960 | None:intergenic |
| TTATACTGCATACGAAGATT+TGG | 0.322526 | 5_4:+61615552 | Msa0862040:three_prime_UTR |
| CTGCTGACTCCGATAATCTT+AGG | 0.339518 | 5_4:-61614080 | None:intergenic |
| GACCTTAATACGATGAAATT+CGG | 0.351240 | 5_4:+61614690 | Msa0862040:CDS |
| TAACCCACAATTACTTTATG+TGG | 0.353300 | 5_4:+61615324 | Msa0862040:three_prime_UTR |
| CTTTACCTCACTTAACTTTG+TGG | 0.355447 | 5_4:-61614241 | None:intergenic |
| CTTCTTATTGTCACGAATGA+AGG | 0.374651 | 5_4:-61612773 | None:intergenic |
| GGTCCCCGTACCCTTGGTTC+TGG | 0.391378 | 5_4:-61612903 | None:intergenic |
| ATCCTCATACGAGGATTTCA+TGG | 0.401246 | 5_4:+61614848 | Msa0862040:CDS |
| AATAAAGCCACACTATTTGA+AGG | 0.404655 | 5_4:-61615437 | None:intergenic |
| TCAAGATATGCAAATTTCTT+CGG | 0.409039 | 5_4:+61614719 | Msa0862040:CDS |
| AAGAGAGACCAAAGAATTCC+AGG | 0.414130 | 5_4:+61614952 | Msa0862040:CDS |
| CATTTCCAGTGGCGGTGCTA+AGG | 0.416658 | 5_4:-61614794 | None:intergenic |
| CAATTACTTTATGTGGGAAC+GGG | 0.419643 | 5_4:+61615331 | Msa0862040:three_prime_UTR |
| ATTGAGGCTCCTAAGATTAT+CGG | 0.420622 | 5_4:+61614071 | Msa0862040:CDS |
| CTAGTTCAGTTTCAATCTCA+TGG | 0.423872 | 5_4:-61614890 | None:intergenic |
| AGCCACACTATTTGAAGGAC+TGG | 0.452225 | 5_4:-61615432 | None:intergenic |
| AGAGAATCCGCCGGATGATA+CGG | 0.452905 | 5_4:+61614749 | Msa0862040:CDS |
| TTGAAAGAAAGTCAGCTAGT+TGG | 0.453383 | 5_4:+61614561 | Msa0862040:CDS |
| TTCCATCGTTTGTTGCCACC+TGG | 0.465887 | 5_4:-61614970 | None:intergenic |
| TTCCATGAAATCCTCGTATG+AGG | 0.468616 | 5_4:-61614850 | None:intergenic |
| GGATATTTCTGACAAGCTGC+TGG | 0.470813 | 5_4:-61614829 | None:intergenic |
| TTTGGAGCAACGATTCGAAC+GGG | 0.477054 | 5_4:-61614630 | None:intergenic |
| TGTCAATTCAAACACGCGAT+TGG | 0.483097 | 5_4:-61615521 | None:intergenic |
| ATTTCCAGTGGCGGTGCTAA+GGG | 0.497416 | 5_4:-61614793 | None:intergenic |
| TTCCCACATAAAGTAATTGT+GGG | 0.501086 | 5_4:-61615327 | None:intergenic |
| AGATCCCTTAGCACCGCCAC+TGG | 0.504381 | 5_4:+61614789 | Msa0862040:CDS |
| TTCTCTGTCTCCGTATCATC+CGG | 0.504637 | 5_4:-61614759 | None:intergenic |
| GTTCCCACATAAAGTAATTG+TGG | 0.510809 | 5_4:-61615328 | None:intergenic |
| TCAACAAAGCTTCTGCTGCC+AGG | 0.512283 | 5_4:+61615256 | Msa0862040:CDS |
| AGCGCAGCATAAGAAGCATA+TGG | 0.512440 | 5_4:-61612804 | None:intergenic |
| ATTAAGGTCAGAATCATCCT+TGG | 0.515417 | 5_4:-61614676 | None:intergenic |
| CGTTCGAATCGTTGCTCCAA+AGG | 0.522561 | 5_4:+61614632 | Msa0862040:CDS |
| CCCCGTACCCTTGGTTCTGG+TGG | 0.532745 | 5_4:-61612900 | None:intergenic |
| ACAATTACTTTATGTGGGAA+CGG | 0.536443 | 5_4:+61615330 | Msa0862040:three_prime_UTR |
| GTTGTTACTCTAACACAGTT+CGG | 0.540442 | 5_4:-61612731 | None:intergenic |
| AACCCACAATTACTTTATGT+GGG | 0.546354 | 5_4:+61615325 | Msa0862040:three_prime_UTR |
| GCAAGAGAAGTTGTGAAGTG+AGG | 0.549036 | 5_4:+61612701 | None:intergenic |
| TTAAGGTCAGAATCATCCTT+GGG | 0.555811 | 5_4:-61614675 | None:intergenic |
| AGCAGCTATAAGCATGCAGA+AGG | 0.557276 | 5_4:+61614119 | Msa0862040:CDS |
| ATTTGAAGGACTGGGCCACT+AGG | 0.561495 | 5_4:-61615423 | None:intergenic |
| CAGCTATAAGCATGCAGAAG+GGG | 0.563154 | 5_4:+61614121 | Msa0862040:CDS |
| ATGTATTGATTTACTCCTAG+TGG | 0.569190 | 5_4:+61615408 | Msa0862040:three_prime_UTR |
| AGCTATAAGCATGCAGAAGG+GGG | 0.572769 | 5_4:+61614122 | Msa0862040:CDS |
| CTGCTCTGTATTGATGATGA+TGG | 0.573291 | 5_4:-61612837 | None:intergenic |
| TCGAATCGTTGCTCCAAAGG+AGG | 0.581641 | 5_4:+61614635 | Msa0862040:CDS |
| TAATGCCATGGATGATCTCA+AGG | 0.581702 | 5_4:-61614995 | None:intergenic |
| GCAGCTATAAGCATGCAGAA+GGG | 0.583610 | 5_4:+61614120 | Msa0862040:CDS |
| CAGCAAATAATGCTAGATTG+AGG | 0.584425 | 5_4:+61614055 | Msa0862040:intron |
| CAAGAGAAGTTGTGAAGTGA+GGG | 0.584455 | 5_4:+61612702 | None:intergenic |
| TGTACCTCTGTCTAATGCCA+TGG | 0.585756 | 5_4:-61615007 | None:intergenic |
| GATATTTCTGACAAGCTGCT+GGG | 0.593061 | 5_4:-61614828 | None:intergenic |
| GAACTCCTTGAGATCATCCA+TGG | 0.594424 | 5_4:+61614990 | Msa0862040:CDS |
| TGTGGGTTACAAGAAAATTG+TGG | 0.597901 | 5_4:-61615310 | None:intergenic |
| TGGAAATGTCACTATGAACA+TGG | 0.602651 | 5_4:+61614581 | Msa0862040:CDS |
| TGAAGGAACAGCCATGGTTG+TGG | 0.606756 | 5_4:-61612756 | None:intergenic |
| CACGAATGAAGGAACAGCCA+TGG | 0.611848 | 5_4:-61612762 | None:intergenic |
| CTTTGGAGCAACGATTCGAA+CGG | 0.612772 | 5_4:-61614631 | None:intergenic |
| GCCACACTATTTGAAGGACT+GGG | 0.616233 | 5_4:-61615431 | None:intergenic |
| GCAGATACCACCAGAACCAA+GGG | 0.616798 | 5_4:+61612893 | Msa0862040:CDS |
| AGCAGATACCACCAGAACCA+AGG | 0.617947 | 5_4:+61612892 | Msa0862040:CDS |
| GCCCAGTCCTTCAAATAGTG+TGG | 0.621774 | 5_4:+61615430 | Msa0862040:three_prime_UTR |
| TCGCAGAATCAGAAGTGCCA+AGG | 0.622972 | 5_4:+61615198 | Msa0862040:intron |
| TTCCAGGTGGCAACAAACGA+TGG | 0.631547 | 5_4:+61614968 | Msa0862040:CDS |
| AGTTCTAAAAGATTCTCCCA+AGG | 0.655268 | 5_4:+61614659 | Msa0862040:CDS |
| GTGCCAAGGAAGCAAAAGTG+AGG | 0.657708 | 5_4:+61615212 | Msa0862040:CDS |
| GGAAAGTCAAGAGAATCCGC+CGG | 0.657796 | 5_4:+61614740 | Msa0862040:CDS |
| GCTTTCCACAAAGTTAAGTG+AGG | 0.667430 | 5_4:+61614236 | Msa0862040:CDS |
| AGTAACAACAGCCACAACCA+TGG | 0.679105 | 5_4:+61612745 | Msa0862040:CDS |
| TCTGTCTCCGTATCATCCGG+CGG | 0.688773 | 5_4:-61614756 | None:intergenic |
| GTCAGAAATATCCTCATACG+AGG | 0.693843 | 5_4:+61614839 | Msa0862040:CDS |
| TCATCCATGGCATTAGACAG+AGG | 0.707537 | 5_4:+61615003 | Msa0862040:CDS |
| GCTCGTCAAGCAATTCAATG+CGG | 0.741102 | 5_4:-61614215 | None:intergenic |
| AGAGACCAAAGAATTCCAGG+TGG | 0.785770 | 5_4:+61614955 | Msa0862040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAATTCAAATTAACA+TGG | - | chr5_4:61613346-61613365 | None:intergenic | 10.0% |
| !!! | ATGTTAATTTGAATTTATAA+AGG | + | chr5_4:61613345-61613364 | Msa0862040:intron | 10.0% |
| !! | AATGAAAATTAAATATTGAA+TGG | + | chr5_4:61613396-61613415 | Msa0862040:intron | 10.0% |
| !! | AAGATATTAAAACTTATTTA+CGG | + | chr5_4:61614022-61614041 | Msa0862040:intron | 10.0% |
| !!! | TATGAAAATTAATTTTGATT+AGG | + | chr5_4:61615083-61615102 | Msa0862040:intron | 10.0% |
| !! | TTTATTAGAGTTTATAAATA+TGG | + | chr5_4:61615454-61615473 | Msa0862040:three_prime_UTR | 10.0% |
| !! | CCAAGTAAAAAAAAAAAAAA+GGG | - | chr5_4:61613026-61613045 | None:intergenic | 15.0% |
| !! | TCCAAGTAAAAAAAAAAAAA+AGG | - | chr5_4:61613027-61613046 | None:intergenic | 15.0% |
| !!! | TAAACATTTTATCTTAAGTT+TGG | - | chr5_4:61613997-61614016 | None:intergenic | 15.0% |
| !!! | TAACAAAAATTAATTTGTTG+AGG | + | chr5_4:61614345-61614364 | Msa0862040:intron | 15.0% |
| !!! | TATCTAAAATTAAAACAACT+AGG | - | chr5_4:61615114-61615133 | None:intergenic | 15.0% |
| !! | AATAAGCAAGAATGAATAAT+GGG | - | chr5_4:61612927-61612946 | None:intergenic | 20.0% |
| !! | AAATAAGCAAGAATGAATAA+TGG | - | chr5_4:61612928-61612947 | None:intergenic | 20.0% |
| !!! | TTTTTACACAATTCAATGAT+GGG | - | chr5_4:61612998-61613017 | None:intergenic | 20.0% |
| !!! | TTTTTTACACAATTCAATGA+TGG | - | chr5_4:61612999-61613018 | None:intergenic | 20.0% |
| !!! | CCCTTTTTTTTTTTTTTACT+TGG | + | chr5_4:61613023-61613042 | Msa0862040:intron | 20.0% |
| !! | TGAATTTATAAAGGTTCATA+AGG | + | chr5_4:61613354-61613373 | Msa0862040:intron | 20.0% |
| !!! | AGTTCTAATTATTTAGTATC+AGG | + | chr5_4:61613461-61613480 | Msa0862040:intron | 20.0% |
| !! | TTAATTTATTTCACCTTTGA+TGG | + | chr5_4:61613780-61613799 | Msa0862040:intron | 20.0% |
| !! | ATATTAAAACTTATTTACGG+TGG | + | chr5_4:61614025-61614044 | Msa0862040:intron | 20.0% |
| !! | ATATTACCTGAAAACAAAAT+AGG | - | chr5_4:61614539-61614558 | None:intergenic | 20.0% |
| !! | ATCTAAATCTACAAATGAAA+CGG | - | chr5_4:61615064-61615083 | None:intergenic | 20.0% |
| !!! | TTTAAGAGTATTCATATAAG+AGG | + | chr5_4:61615138-61615157 | Msa0862040:intron | 20.0% |
| !! | TTTTACACAATTCAATGATG+GGG | - | chr5_4:61612997-61613016 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATCCAAAT+AGG | + | chr5_4:61613272-61613291 | Msa0862040:intron | 25.0% |
| ! | TTAAGCTGTTTATCCAAATA+GGG | + | chr5_4:61613273-61613292 | Msa0862040:intron | 25.0% |
| !! | AAGTGCAATTTTATGCATAT+AGG | - | chr5_4:61613299-61613318 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGTTAAAC+AGG | - | chr5_4:61613571-61613590 | None:intergenic | 25.0% |
| ! | TTTATGTTGTATGTCCAAAT+TGG | + | chr5_4:61613657-61613676 | Msa0862040:intron | 25.0% |
| ! | TTATGTTGTATGTCCAAATT+GGG | + | chr5_4:61613658-61613677 | Msa0862040:intron | 25.0% |
| ! | ATAGCATTTATTCACTAAGT+AGG | - | chr5_4:61613938-61613957 | None:intergenic | 25.0% |
| ! | TATGCTTGTACAAAGAAAAA+AGG | + | chr5_4:61614164-61614183 | Msa0862040:CDS | 25.0% |
| ! | TGATATCATTGTCATAATGA+TGG | - | chr5_4:61614322-61614341 | None:intergenic | 25.0% |
| ! | TAAAACGTCATACAGTATAT+GGG | + | chr5_4:61614474-61614493 | Msa0862040:intron | 25.0% |
| !!! | AAGAAACCTATTTTGTTTTC+AGG | + | chr5_4:61614530-61614549 | Msa0862040:intron | 25.0% |
| ! | TCAAGATATGCAAATTTCTT+CGG | + | chr5_4:61614719-61614738 | Msa0862040:CDS | 25.0% |
| !!! | AAATGTCTCAGTTTTAGTAT+TGG | + | chr5_4:61614923-61614942 | Msa0862040:CDS | 25.0% |
| TTTACACAATTCAATGATGG+GGG | - | chr5_4:61612996-61613015 | None:intergenic | 30.0% | |
| ACTGAGAGAATTTATGAACA+CGG | + | chr5_4:61613145-61613164 | Msa0862040:intron | 30.0% | |
| !!! | GAACTTTTGCTTTTTATAGC+TGG | - | chr5_4:61613446-61613465 | None:intergenic | 30.0% |
| GCTTTATGAATCTACATCTA+TGG | + | chr5_4:61613753-61613772 | Msa0862040:intron | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | + | chr5_4:61613842-61613861 | Msa0862040:intron | 30.0% | |
| ! | TAGTGTCAGTTTGTTCAAAT+TGG | + | chr5_4:61614382-61614401 | Msa0862040:intron | 30.0% |
| CTAAAACGTCATACAGTATA+TGG | + | chr5_4:61614473-61614492 | Msa0862040:intron | 30.0% | |
| AAAACGTCATACAGTATATG+GGG | + | chr5_4:61614475-61614494 | Msa0862040:intron | 30.0% | |
| GACCTTAATACGATGAAATT+CGG | + | chr5_4:61614690-61614709 | Msa0862040:CDS | 30.0% | |
| !!! | TATGTTGTTTTCATTTCCAG+TGG | - | chr5_4:61614808-61614827 | None:intergenic | 30.0% |
| !! | AAGAGTATTCATATAAGAGG+CGG | + | chr5_4:61615141-61615160 | Msa0862040:intron | 30.0% |
| TAACCCACAATTACTTTATG+TGG | + | chr5_4:61615324-61615343 | Msa0862040:three_prime_UTR | 30.0% | |
| AACCCACAATTACTTTATGT+GGG | + | chr5_4:61615325-61615344 | Msa0862040:three_prime_UTR | 30.0% | |
| TTCCCACATAAAGTAATTGT+GGG | - | chr5_4:61615330-61615349 | None:intergenic | 30.0% | |
| ACAATTACTTTATGTGGGAA+CGG | + | chr5_4:61615330-61615349 | Msa0862040:three_prime_UTR | 30.0% | |
| !! | ATGTATTGATTTACTCCTAG+TGG | + | chr5_4:61615408-61615427 | Msa0862040:three_prime_UTR | 30.0% |
| AATAAAGCCACACTATTTGA+AGG | - | chr5_4:61615440-61615459 | None:intergenic | 30.0% | |
| TTATACTGCATACGAAGATT+TGG | + | chr5_4:61615552-61615571 | Msa0862040:three_prime_UTR | 30.0% | |
| GTTGTTACTCTAACACAGTT+CGG | - | chr5_4:61612734-61612753 | None:intergenic | 35.0% | |
| CTTCTTATTGTCACGAATGA+AGG | - | chr5_4:61612776-61612795 | None:intergenic | 35.0% | |
| AATACGCCTCTCAAGATTAT+GGG | + | chr5_4:61613062-61613081 | Msa0862040:intron | 35.0% | |
| TTATGCATATAGGCCCTATT+TGG | - | chr5_4:61613289-61613308 | None:intergenic | 35.0% | |
| TCTGACTAGTGCTTATTTGT+AGG | - | chr5_4:61613502-61613521 | None:intergenic | 35.0% | |
| AGTCAGATTGTGAGAGTTTA+TGG | + | chr5_4:61613515-61613534 | Msa0862040:intron | 35.0% | |
| TACATGAAACATGAATTGCG+TGG | + | chr5_4:61613714-61613733 | Msa0862040:intron | 35.0% | |
| AGGCTTATGATAGAACACTA+TGG | + | chr5_4:61613822-61613841 | Msa0862040:intron | 35.0% | |
| CAGCAAATAATGCTAGATTG+AGG | + | chr5_4:61614055-61614074 | Msa0862040:intron | 35.0% | |
| ATTGAGGCTCCTAAGATTAT+CGG | + | chr5_4:61614071-61614090 | Msa0862040:CDS | 35.0% | |
| !! | AAAAAAGGTGTTGCAAGCTT+TGG | + | chr5_4:61614179-61614198 | Msa0862040:CDS | 35.0% |
| CTTTACCTCACTTAACTTTG+TGG | - | chr5_4:61614244-61614263 | None:intergenic | 35.0% | |
| ATTTGATTGTCAAGCATGTC+TGG | - | chr5_4:61614435-61614454 | None:intergenic | 35.0% | |
| TTGAAAGAAAGTCAGCTAGT+TGG | + | chr5_4:61614561-61614580 | Msa0862040:CDS | 35.0% | |
| TGGAAATGTCACTATGAACA+TGG | + | chr5_4:61614581-61614600 | Msa0862040:CDS | 35.0% | |
| !!! | TCTTTTAGAACTTCCTCCTT+TGG | - | chr5_4:61614651-61614670 | None:intergenic | 35.0% |
| !! | AGTTCTAAAAGATTCTCCCA+AGG | + | chr5_4:61614659-61614678 | Msa0862040:CDS | 35.0% |
| TTAAGGTCAGAATCATCCTT+GGG | - | chr5_4:61614678-61614697 | None:intergenic | 35.0% | |
| ATTAAGGTCAGAATCATCCT+TGG | - | chr5_4:61614679-61614698 | None:intergenic | 35.0% | |
| TGCCGAATTTCATCGTATTA+AGG | - | chr5_4:61614695-61614714 | None:intergenic | 35.0% | |
| CTAGTTCAGTTTCAATCTCA+TGG | - | chr5_4:61614893-61614912 | None:intergenic | 35.0% | |
| ! | TGTGGGTTACAAGAAAATTG+TGG | - | chr5_4:61615313-61615332 | None:intergenic | 35.0% |
| GTTCCCACATAAAGTAATTG+TGG | - | chr5_4:61615331-61615350 | None:intergenic | 35.0% | |
| CAATTACTTTATGTGGGAAC+GGG | + | chr5_4:61615331-61615350 | Msa0862040:three_prime_UTR | 35.0% | |
| AAACACGCGATTGGAATTTA+TGG | - | chr5_4:61615515-61615534 | None:intergenic | 35.0% | |
| !! | CTGCTCTGTATTGATGATGA+TGG | - | chr5_4:61612840-61612859 | None:intergenic | 40.0% |
| ! | ATGATGGGGGTGACAATAAT+GGG | - | chr5_4:61612983-61613002 | None:intergenic | 40.0% |
| ! | AATGATGGGGGTGACAATAA+TGG | - | chr5_4:61612984-61613003 | None:intergenic | 40.0% |
| ! | CATAATCTTGAGAGGCGTAT+TGG | - | chr5_4:61613063-61613082 | None:intergenic | 40.0% |
| CAATACGCCTCTCAAGATTA+TGG | + | chr5_4:61613061-61613080 | Msa0862040:intron | 40.0% | |
| AACATGCCCATAATCTTGAG+AGG | - | chr5_4:61613071-61613090 | None:intergenic | 40.0% | |
| CTCAAGATTATGGGCATGTT+TGG | + | chr5_4:61613071-61613090 | Msa0862040:intron | 40.0% | |
| AAGTTAAACAGGAGAGCTTG+TGG | - | chr5_4:61613560-61613579 | None:intergenic | 40.0% | |
| TGAAGAGACTAGACCCAATT+TGG | - | chr5_4:61613674-61613693 | None:intergenic | 40.0% | |
| TTGGGTCTAGTCTCTTCAAT+AGG | + | chr5_4:61613676-61613695 | Msa0862040:intron | 40.0% | |
| ACTAAGTAGGTCTCCATCAA+AGG | - | chr5_4:61613796-61613815 | None:intergenic | 40.0% | |
| TTTGATGGAGACCTACTTAG+TGG | + | chr5_4:61613795-61613814 | Msa0862040:intron | 40.0% | |
| TTGATGGAGACCTACTTAGT+GGG | + | chr5_4:61613796-61613815 | Msa0862040:intron | 40.0% | |
| ! | TAAGCCTTATCCCACTAAGT+AGG | - | chr5_4:61613809-61613828 | None:intergenic | 40.0% |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr5_4:61613891-61613910 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr5_4:61613892-61613911 | None:intergenic | 40.0% |
| !! | TTGTTTCTGACCTTTGCTAG+AGG | + | chr5_4:61613962-61613981 | Msa0862040:intron | 40.0% |
| ! | TGTTTCTGACCTTTGCTAGA+GGG | + | chr5_4:61613963-61613982 | Msa0862040:intron | 40.0% |
| AGGGGGATGAAAATTATGCA+AGG | + | chr5_4:61614139-61614158 | Msa0862040:CDS | 40.0% | |
| GGGGGATGAAAATTATGCAA+GGG | + | chr5_4:61614140-61614159 | Msa0862040:CDS | 40.0% | |
| GCTTTCCACAAAGTTAAGTG+AGG | + | chr5_4:61614236-61614255 | Msa0862040:CDS | 40.0% | |
| ATGATGAGGTAGTAGACACA+TGG | - | chr5_4:61614410-61614429 | None:intergenic | 40.0% | |
| CATACAGTATATGGGGACAA+AGG | + | chr5_4:61614482-61614501 | Msa0862040:intron | 40.0% | |
| !! | GTTGTTTTCATTTCCAGTGG+CGG | - | chr5_4:61614805-61614824 | None:intergenic | 40.0% |
| ! | GATATTTCTGACAAGCTGCT+GGG | - | chr5_4:61614831-61614850 | None:intergenic | 40.0% |
| GTCAGAAATATCCTCATACG+AGG | + | chr5_4:61614839-61614858 | Msa0862040:CDS | 40.0% | |
| ATCCTCATACGAGGATTTCA+TGG | + | chr5_4:61614848-61614867 | Msa0862040:CDS | 40.0% | |
| TTCCATGAAATCCTCGTATG+AGG | - | chr5_4:61614853-61614872 | None:intergenic | 40.0% | |
| AAGAGAGACCAAAGAATTCC+AGG | + | chr5_4:61614952-61614971 | Msa0862040:CDS | 40.0% | |
| TAATGCCATGGATGATCTCA+AGG | - | chr5_4:61614998-61615017 | None:intergenic | 40.0% | |
| !!! | GACTCAAGTTAGTTTTCACC+TGG | - | chr5_4:61615277-61615296 | None:intergenic | 40.0% |
| TGTCAATTCAAACACGCGAT+TGG | - | chr5_4:61615524-61615543 | None:intergenic | 40.0% | |
| AGTAACAACAGCCACAACCA+TGG | + | chr5_4:61612745-61612764 | Msa0862040:CDS | 45.0% | |
| ! | AGCGCAGCATAAGAAGCATA+TGG | - | chr5_4:61612807-61612826 | None:intergenic | 45.0% |
| GAGACCTACTTAGTGGGATA+AGG | + | chr5_4:61613802-61613821 | Msa0862040:intron | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr5_4:61613893-61613912 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr5_4:61613890-61613909 | Msa0862040:intron | 45.0% | |
| !! | CTGCTGACTCCGATAATCTT+AGG | - | chr5_4:61614083-61614102 | None:intergenic | 45.0% |
| AGCAGCTATAAGCATGCAGA+AGG | + | chr5_4:61614119-61614138 | Msa0862040:CDS | 45.0% | |
| GCAGCTATAAGCATGCAGAA+GGG | + | chr5_4:61614120-61614139 | Msa0862040:CDS | 45.0% | |
| CAGCTATAAGCATGCAGAAG+GGG | + | chr5_4:61614121-61614140 | Msa0862040:CDS | 45.0% | |
| AGCTATAAGCATGCAGAAGG+GGG | + | chr5_4:61614122-61614141 | Msa0862040:CDS | 45.0% | |
| GCTCGTCAAGCAATTCAATG+CGG | - | chr5_4:61614218-61614237 | None:intergenic | 45.0% | |
| AAGCATGTCTGGCAATGATG+AGG | - | chr5_4:61614424-61614443 | None:intergenic | 45.0% | |
| ! | TTTGGAGCAACGATTCGAAC+GGG | - | chr5_4:61614633-61614652 | None:intergenic | 45.0% |
| !! | CTTTGGAGCAACGATTCGAA+CGG | - | chr5_4:61614634-61614653 | None:intergenic | 45.0% |
| TTCTCTGTCTCCGTATCATC+CGG | - | chr5_4:61614762-61614781 | None:intergenic | 45.0% | |
| ! | GGATATTTCTGACAAGCTGC+TGG | - | chr5_4:61614832-61614851 | None:intergenic | 45.0% |
| AGAGACCAAAGAATTCCAGG+TGG | + | chr5_4:61614955-61614974 | Msa0862040:CDS | 45.0% | |
| TGTTGCCACCTGGAATTCTT+TGG | - | chr5_4:61614963-61614982 | None:intergenic | 45.0% | |
| GAACTCCTTGAGATCATCCA+TGG | + | chr5_4:61614990-61615009 | Msa0862040:CDS | 45.0% | |
| TCATCCATGGCATTAGACAG+AGG | + | chr5_4:61615003-61615022 | Msa0862040:CDS | 45.0% | |
| TGTACCTCTGTCTAATGCCA+TGG | - | chr5_4:61615010-61615029 | None:intergenic | 45.0% | |
| TAAGAGGCGGAAAGTAATGC+AGG | + | chr5_4:61615154-61615173 | Msa0862040:intron | 45.0% | |
| AAGAGGCGGAAAGTAATGCA+GGG | + | chr5_4:61615155-61615174 | Msa0862040:intron | 45.0% | |
| !! | GATCCTCACTTTTGCTTCCT+TGG | - | chr5_4:61615218-61615237 | None:intergenic | 45.0% |
| GCCACACTATTTGAAGGACT+GGG | - | chr5_4:61615434-61615453 | None:intergenic | 45.0% | |
| AGCCACACTATTTGAAGGAC+TGG | - | chr5_4:61615435-61615454 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTATTTAATCATT+TGG | + | chr5_4:61613190-61613209 | Msa0862040:intron | 5.0% |
| TGAAGGAACAGCCATGGTTG+TGG | - | chr5_4:61612759-61612778 | None:intergenic | 50.0% | |
| CACGAATGAAGGAACAGCCA+TGG | - | chr5_4:61612765-61612784 | None:intergenic | 50.0% | |
| AGCAGATACCACCAGAACCA+AGG | + | chr5_4:61612892-61612911 | Msa0862040:CDS | 50.0% | |
| GCAGATACCACCAGAACCAA+GGG | + | chr5_4:61612893-61612912 | Msa0862040:CDS | 50.0% | |
| TACCACCAGAACCAAGGGTA+CGG | + | chr5_4:61612898-61612917 | Msa0862040:intron | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr5_4:61613879-61613898 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | chr5_4:61613878-61613897 | Msa0862040:intron | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | + | chr5_4:61613879-61613898 | Msa0862040:intron | 50.0% | |
| GACATGTCACCCTCTAGCAA+AGG | - | chr5_4:61613975-61613994 | None:intergenic | 50.0% | |
| CGTTCGAATCGTTGCTCCAA+AGG | + | chr5_4:61614632-61614651 | Msa0862040:CDS | 50.0% | |
| TCGAATCGTTGCTCCAAAGG+AGG | + | chr5_4:61614635-61614654 | Msa0862040:CDS | 50.0% | |
| GGAAAGTCAAGAGAATCCGC+CGG | + | chr5_4:61614740-61614759 | Msa0862040:CDS | 50.0% | |
| AGAGAATCCGCCGGATGATA+CGG | + | chr5_4:61614749-61614768 | Msa0862040:CDS | 50.0% | |
| ! | ATTTCCAGTGGCGGTGCTAA+GGG | - | chr5_4:61614796-61614815 | None:intergenic | 50.0% |
| TTCCAGGTGGCAACAAACGA+TGG | + | chr5_4:61614968-61614987 | Msa0862040:CDS | 50.0% | |
| ! | TTCCATCGTTTGTTGCCACC+TGG | - | chr5_4:61614973-61614992 | None:intergenic | 50.0% |
| !! | TCGCAGAATCAGAAGTGCCA+AGG | + | chr5_4:61615198-61615217 | Msa0862040:intron | 50.0% |
| GTGCCAAGGAAGCAAAAGTG+AGG | + | chr5_4:61615212-61615231 | Msa0862040:CDS | 50.0% | |
| TCAACAAAGCTTCTGCTGCC+AGG | + | chr5_4:61615256-61615275 | Msa0862040:CDS | 50.0% | |
| ATTTGAAGGACTGGGCCACT+AGG | - | chr5_4:61615426-61615445 | None:intergenic | 50.0% | |
| GCCCAGTCCTTCAAATAGTG+TGG | + | chr5_4:61615430-61615449 | Msa0862040:three_prime_UTR | 50.0% | |
| ! | ACCACCAGAACCAAGGGTAC+GGG | + | chr5_4:61612899-61612918 | Msa0862040:intron | 55.0% |
| !! | ATAATGGGTCCCCGTACCCT+TGG | - | chr5_4:61612912-61612931 | None:intergenic | 55.0% |
| TCTGTCTCCGTATCATCCGG+CGG | - | chr5_4:61614759-61614778 | None:intergenic | 55.0% | |
| ! | CATTTCCAGTGGCGGTGCTA+AGG | - | chr5_4:61614797-61614816 | None:intergenic | 55.0% |
| ! | CCACCAGAACCAAGGGTACG+GGG | + | chr5_4:61612900-61612919 | Msa0862040:intron | 60.0% |
| AGATCCCTTAGCACCGCCAC+TGG | + | chr5_4:61614789-61614808 | Msa0862040:CDS | 60.0% | |
| !! | CCCCGTACCCTTGGTTCTGG+TGG | - | chr5_4:61612903-61612922 | None:intergenic | 65.0% |
| GGTCCCCGTACCCTTGGTTC+TGG | - | chr5_4:61612906-61612925 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 61612704 | 61615589 | 61612704 | ID=Msa0862040;Name=Msa0862040 |
| chr5_4 | mRNA | 61612704 | 61615589 | 61612704 | ID=Msa0862040-mRNA-1;Parent=Msa0862040;Name=Msa0862040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=21|0.66|0.75|1|1|1|4|308|317 |
| chr5_4 | exon | 61612704 | 61612914 | 61612704 | ID=Msa0862040-mRNA-1:exon:19104;Parent=Msa0862040-mRNA-1 |
| chr5_4 | exon | 61614058 | 61614257 | 61614058 | ID=Msa0862040-mRNA-1:exon:19105;Parent=Msa0862040-mRNA-1 |
| chr5_4 | exon | 61614552 | 61615037 | 61614552 | ID=Msa0862040-mRNA-1:exon:19106;Parent=Msa0862040-mRNA-1 |
| chr5_4 | exon | 61615204 | 61615589 | 61615204 | ID=Msa0862040-mRNA-1:exon:19107;Parent=Msa0862040-mRNA-1 |
| chr5_4 | five_prime_UTR | 61612704 | 61612724 | 61612704 | ID=Msa0862040-mRNA-1:five_prime_utr;Parent=Msa0862040-mRNA-1 |
| chr5_4 | CDS | 61612725 | 61612914 | 61612725 | ID=Msa0862040-mRNA-1:cds;Parent=Msa0862040-mRNA-1 |
| chr5_4 | CDS | 61614058 | 61614257 | 61614058 | ID=Msa0862040-mRNA-1:cds;Parent=Msa0862040-mRNA-1 |
| chr5_4 | CDS | 61614552 | 61615037 | 61614552 | ID=Msa0862040-mRNA-1:cds;Parent=Msa0862040-mRNA-1 |
| chr5_4 | CDS | 61615204 | 61615281 | 61615204 | ID=Msa0862040-mRNA-1:cds;Parent=Msa0862040-mRNA-1 |
| chr5_4 | three_prime_UTR | 61615282 | 61615589 | 61615282 | ID=Msa0862040-mRNA-1:three_prime_utr;Parent=Msa0862040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
