AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094240 MtrunA17_Chr4g0076241 96.023 352 14 0 1 352 1 352 0.0 683
Msa0094240 MtrunA17_Chr5g0446411 57.061 347 145 2 1 347 1 343 1.89e-127 369
Msa0094240 MtrunA17_Chr7g0270761 35.836 293 184 2 55 343 131 423 3.90e-64 209
Msa0094240 MtrunA17_Chr4g0051871 36.462 277 168 4 76 347 140 413 1.02e-61 203
Msa0094240 MtrunA17_Chr5g0443241 32.515 326 190 9 3 313 37 347 2.51e-45 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094240 AT5G55630.2 57.627 295 125 0 53 347 58 352 6.07e-119 348
Msa0094240 AT5G55630.1 57.627 295 125 0 53 347 58 352 6.07e-119 348
Msa0094240 AT4G18160.1 38.571 280 167 3 72 347 151 429 3.25e-59 197
Msa0094240 AT4G01840.1 32.530 332 208 3 26 347 78 403 3.62e-57 191
Msa0094240 AT5G46370.1 36.429 280 165 5 78 347 153 429 4.64e-56 189
Msa0094240 AT1G02510.1 33.216 283 167 3 53 335 17 277 8.40e-46 158
Msa0094240 AT5G46360.1 38.554 166 101 1 183 347 89 254 9.68e-31 117
Msa0094240 AT5G46360.2 38.732 142 86 1 183 323 89 230 1.06e-25 104

Find 63 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCCACGGTCACTACTTT+AGG 0.301171 1_2:-77435548 Msa0094240:CDS
GTTATACATTGTGGAGATAA+AGG 0.305350 1_2:+77436061 None:intergenic
GAAATTTGAACAACCTTATC+AGG 0.305862 1_2:-77437468 Msa0094240:intron
ATGTGCAAGGCTGAAAATTT+TGG 0.309852 1_2:-77435722 Msa0094240:CDS
TGTATACAAGTTGAAGGAAA+TGG 0.323817 1_2:-77432698 Msa0094240:CDS
CGGTCACTACTTTAGGTTAT+GGG 0.344172 1_2:-77435541 Msa0094240:CDS
TCACTGCTGAAATATCTTCT+TGG 0.344460 1_2:+77432665 None:intergenic
TTGTCACAACACAGAAATAA+AGG 0.357592 1_2:+77435903 None:intergenic
TGTCGTGGTGGACTAGGAAT+AGG 0.358743 1_2:+77437654 None:intergenic
ACTAGTAAAATCTGAGTCAT+TGG 0.385151 1_2:-77437679 None:intergenic
AGATTACATTGTTGAGAAAC+AGG 0.387285 1_2:-77435765 Msa0094240:CDS
ACGGTCACTACTTTAGGTTA+TGG 0.387375 1_2:-77435542 Msa0094240:CDS
TTATACATTGTGGAGATAAA+GGG 0.395633 1_2:+77436062 None:intergenic
ATTGTGGAGATAAAGGGGTT+TGG 0.406546 1_2:+77436068 None:intergenic
GTATACAAGTTGAAGGAAAT+GGG 0.421596 1_2:-77432697 Msa0094240:CDS
CTTGAGGCAGCAGATCTTGA+TGG 0.425392 1_2:-77435350 Msa0094240:CDS
GTCTTCACTGGCATGGCTCT+CGG 0.434853 1_2:-77435812 Msa0094240:CDS
ACAATGACTACTGTTGGATA+TGG 0.435922 1_2:-77435884 Msa0094240:CDS
GTTTGTTGTATACAAGTTGA+AGG 0.439684 1_2:-77432704 Msa0094240:CDS
GCATGCATTTATGTCTTCAC+TGG 0.440926 1_2:-77435824 Msa0094240:CDS
AGCATTAGTAAATAAGTTGA+TGG 0.453687 1_2:-77436242 Msa0094240:exon
GAAGAAGAAGTTGTCGATTG+AGG 0.454673 1_2:+77437528 None:intergenic
TCTAACAAGTTACCAAATTG+AGG 0.463818 1_2:-77435954 Msa0094240:CDS
ACGATTGGATATACCTGATA+AGG 0.467074 1_2:+77437455 None:intergenic
TGTCACAACACAGAAATAAA+GGG 0.481987 1_2:+77435904 None:intergenic
AATTCATGATGTGTATAGTA+AGG 0.483946 1_2:+77432546 None:intergenic
GAATGTCCATTTGGAAGCAT+CGG 0.489194 1_2:-77437590 Msa0094240:five_prime_UTR
ATTGAGCAGCACCATTTGCT+TGG 0.490697 1_2:-77435468 Msa0094240:CDS
AGCTATTGCTTTCAGAGTCA+AGG 0.495133 1_2:-77436201 Msa0094240:CDS
GTGGAGATAAAGGGGTTTGG+AGG 0.501419 1_2:+77436071 None:intergenic
AAACTAGACTGTGATCAATC+AGG 0.508619 1_2:-77432628 Msa0094240:CDS
CATTTATGTCTTCACTGGCA+TGG 0.510032 1_2:-77435819 Msa0094240:CDS
GCAGTCTTCTTCTCTGAAGA+AGG 0.515544 1_2:+77436149 None:intergenic
ATGTCTCCGATGCTTCCAAA+TGG 0.517766 1_2:+77437584 None:intergenic
AGAAGATATTTCAGCAGTGA+TGG 0.521751 1_2:-77432662 Msa0094240:CDS
AAGAGCTTCTCGACTGCTGC+CGG 0.529816 1_2:-77435515 Msa0094240:CDS
CTAACAAGTTACCAAATTGA+GGG 0.530492 1_2:-77435953 Msa0094240:CDS
AAGAAGCAGAATTCAAGTTC+AGG 0.531566 1_2:-77436030 Msa0094240:CDS
AAAAGACTGAGCCAAGCAAA+TGG 0.534462 1_2:+77435457 None:intergenic
ACTCTATTGTGTTTGTTCCA+CGG 0.539533 1_2:-77435561 Msa0094240:CDS
TGTTTATCAGTTATACATTG+TGG 0.539721 1_2:+77436052 None:intergenic
TAAGGCAGATGATGTTAAGA+TGG 0.546031 1_2:+77432564 None:intergenic
TTGATGGAGACAAAGTTGTC+AGG 0.546814 1_2:-77435334 Msa0094240:intron
GCTATTGCTTTCAGAGTCAA+GGG 0.570375 1_2:-77436200 Msa0094240:CDS
TCTTGCTGAGTCCATGTGCA+AGG 0.575638 1_2:-77435735 Msa0094240:CDS
ACTTGTTAGATAGAAACATA+AGG 0.578014 1_2:+77435967 None:intergenic
ATTATCACTAAGTGATCTTG+AGG 0.579141 1_2:-77435366 Msa0094240:CDS
TATACATTGTGGAGATAAAG+GGG 0.579592 1_2:+77436063 None:intergenic
TGAAGACATAAATGCATGCA+AGG 0.589047 1_2:+77435828 None:intergenic
TTGTGTTTAGCAGCATACCT+AGG 0.589326 1_2:-77435998 Msa0094240:CDS
GTTGTGACAATGACTACTGT+TGG 0.595895 1_2:-77435890 Msa0094240:CDS
GGTCACTACTTTAGGTTATG+GGG 0.598779 1_2:-77435540 Msa0094240:CDS
TGAAGATAGACAAAGATCAC+TGG 0.601013 1_2:-77435411 Msa0094240:CDS
GCATTAGTAAATAAGTTGAT+GGG 0.601074 1_2:-77436241 Msa0094240:exon
AACATAAGGTACCTGTGCCT+AGG 0.617422 1_2:+77435981 None:intergenic
AGAAGAAGACTGCGGCGTGG+CGG 0.622978 1_2:-77436139 Msa0094240:CDS
GCTTCTCGACTGCTGCCGGT+AGG 0.626037 1_2:-77435511 Msa0094240:CDS
TTAGCAGCATACCTAGGCAC+AGG 0.645513 1_2:-77435992 Msa0094240:CDS
TTCACTGGCATGGCTCTCGG+TGG 0.647484 1_2:-77435809 Msa0094240:CDS
AATCTGCAGCAAGAACAGAA+TGG 0.667031 1_2:-77436097 Msa0094240:CDS
ATAACCTAAAGTAGTGACCG+TGG 0.717695 1_2:+77435544 None:intergenic
CAGAGAAGAAGACTGCGGCG+TGG 0.719236 1_2:-77436142 Msa0094240:CDS
TTCTTCAGAGAAGAAGACTG+CGG 0.725911 1_2:-77436147 Msa0094240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTATTTTTTTT+TGG - chr1_2:77437112-77437131 Msa0094240:intron 0.0%
!!! TAAAGTAATATTTTACATTT+GGG + chr1_2:77435114-77435133 None:intergenic 10.0%
!!! ATAAAGTAATATTTTACATT+TGG + chr1_2:77435115-77435134 None:intergenic 10.0%
!! ATTAAAAAAATTATTCAATG+CGG - chr1_2:77435304-77435323 Msa0094240:intron 10.0%
!! TGAAAAACATAAAATTAATT+GGG + chr1_2:77436392-77436411 None:intergenic 10.0%
!! TTGAAAAACATAAAATTAAT+TGG + chr1_2:77436393-77436412 None:intergenic 10.0%
!!! AATGAGTTTTTTAAATTTTT+GGG - chr1_2:77436736-77436755 Msa0094240:intron 10.0%
!! TAATTTCAATAAAAATTATG+TGG - chr1_2:77436783-77436802 Msa0094240:intron 10.0%
!!! TTTCCATTTTATTTTATTTT+TGG + chr1_2:77437007-77437026 None:intergenic 10.0%
!! ATAAAATGGAAATTAAAATA+AGG - chr1_2:77437015-77437034 Msa0094240:intron 10.0%
!!! AATCAATCTTAAACATTTTA+AGG - chr1_2:77432460-77432479 Msa0094240:three_prime_UTR 15.0%
!! AAATATAGAGTAATAGTTAT+AGG + chr1_2:77432737-77432756 None:intergenic 15.0%
!! AACATTGAATTGAAATTTAA+TGG - chr1_2:77432791-77432810 Msa0094240:intron 15.0%
!!! TAGTTTTTTTTTGTAATGTT+CGG + chr1_2:77433525-77433544 None:intergenic 15.0%
!! AACATTACAAAAAAAAACTA+AGG - chr1_2:77433525-77433544 Msa0094240:intron 15.0%
!! ACATTACAAAAAAAAACTAA+GGG - chr1_2:77433526-77433545 Msa0094240:intron 15.0%
!! ACATAAGCATTTATATAATA+AGG - chr1_2:77433745-77433764 Msa0094240:intron 15.0%
!! CATAAGCATTTATATAATAA+GGG - chr1_2:77433746-77433765 Msa0094240:intron 15.0%
!! TTAAAAAAATTATTCAATGC+GGG - chr1_2:77435305-77435324 Msa0094240:intron 15.0%
!!! AAAGTCATTTTTTTTAATAG+GGG + chr1_2:77436932-77436951 None:intergenic 15.0%
!!! GAAAGTCATTTTTTTTAATA+GGG + chr1_2:77436931-77436950 None:intergenic 15.0%
!! AGAATTAAAAAGAGTTAAAA+AGG - chr1_2:77435749-77435768 Msa0094240:CDS 15.0%
!!! ATATTTTCGAAATTCAAATT+AGG + chr1_2:77436270-77436289 None:intergenic 15.0%
!! GAAAAACATAAAATTAATTG+GGG + chr1_2:77436391-77436410 None:intergenic 15.0%
!!! ATCATAAACTTAAGTTTTAT+AGG + chr1_2:77436454-77436473 None:intergenic 15.0%
!!! AAACTTAAGTTTATGATTTT+TGG - chr1_2:77436457-77436476 Msa0094240:intron 15.0%
!!! GAATGAGTTTTTTAAATTTT+TGG - chr1_2:77436735-77436754 Msa0094240:intron 15.0%
!!! GAAAGTCATTTTTTTTAATA+GGG - chr1_2:77436931-77436950 Msa0094240:intron 15.0%
!!! AAAGTCATTTTTTTTAATAG+GGG - chr1_2:77436932-77436951 Msa0094240:intron 15.0%
!! TAGCCAAAAATAAAATAAAA+TGG - chr1_2:77437001-77437020 Msa0094240:intron 15.0%
!!! AAGTTTATACTTTTAATGAA+TGG - chr1_2:77437634-77437653 Msa0094240:five_prime_UTR 15.0%
!!! ATATCGATTGAAATCTTAAA+AGG + chr1_2:77432674-77432693 None:intergenic 20.0%
!! ATGGTAATTGTAATTGTTAA+TGG - chr1_2:77432810-77432829 Msa0094240:intron 20.0%
!!! ATTTATTTGAGTTTAGTTAC+CGG - chr1_2:77433317-77433336 Msa0094240:intron 20.0%
!! TTATGAGTGAATTTGTAAAT+TGG + chr1_2:77434887-77434906 None:intergenic 20.0%
!! TAAAAAAATTATTCAATGCG+GGG - chr1_2:77435306-77435325 Msa0094240:intron 20.0%
!!! AAGTCATTTTTTTTAATAGG+GGG + chr1_2:77436933-77436952 None:intergenic 20.0%
!!! GGAAAGTCATTTTTTTTAAT+AGG + chr1_2:77436930-77436949 None:intergenic 20.0%
!!! AAAGAGTTAAAAAGGAATTT+TGG - chr1_2:77435757-77435776 Msa0094240:CDS 20.0%
!! AATTAAAAAAAAATTCCACG+TGG - chr1_2:77436821-77436840 Msa0094240:intron 20.0%
!!! GGAAAGTCATTTTTTTTAAT+AGG - chr1_2:77436930-77436949 Msa0094240:intron 20.0%
!!! AAGTCATTTTTTTTAATAGG+GGG - chr1_2:77436933-77436952 Msa0094240:intron 20.0%
!! TTTATTTATATCATTTGCAC+CGG - chr1_2:77437222-77437241 Msa0094240:intron 20.0%
!! AAAATTGTTGATCAATATTG+AGG + chr1_2:77437339-77437358 None:intergenic 20.0%
! AAAAGATTTAACATCTTGAG+AGG + chr1_2:77433118-77433137 None:intergenic 25.0%
!! ACTATTTTCATAAGTCATTG+TGG + chr1_2:77433667-77433686 None:intergenic 25.0%
!! AGCATTAGTAAATAAGTTGA+TGG - chr1_2:77433837-77433856 Msa0094240:intron 25.0%
!!! GCATTAGTAAATAAGTTGAT+GGG - chr1_2:77433838-77433857 Msa0094240:intron 25.0%
! TTATACATTGTGGAGATAAA+GGG + chr1_2:77434020-77434039 None:intergenic 25.0%
! TGTTTATCAGTTATACATTG+TGG + chr1_2:77434030-77434049 None:intergenic 25.0%
!! ACTTGTTAGATAGAAACATA+AGG + chr1_2:77434115-77434134 None:intergenic 25.0%
!! TATTGAGAATCTAGATTTTG+TGG - chr1_2:77434491-77434510 Msa0094240:intron 25.0%
!! ATCACTTAGTGATAATTTTC+GGG + chr1_2:77434709-77434728 None:intergenic 25.0%
!! GATCACTTAGTGATAATTTT+CGG + chr1_2:77434710-77434729 None:intergenic 25.0%
!!! TAATATTTTACATTTGGGAC+GGG + chr1_2:77435109-77435128 None:intergenic 25.0%
!! GTAATATTTTACATTTGGGA+CGG + chr1_2:77435110-77435129 None:intergenic 25.0%
! AAACTACCTTTGATACTTAA+AGG - chr1_2:77435180-77435199 Msa0094240:intron 25.0%
!!! TGTATTACAATGTTGCTTTT+AGG - chr1_2:77435257-77435276 Msa0094240:intron 25.0%
!!! GTATTACAATGTTGCTTTTA+GGG - chr1_2:77435258-77435277 Msa0094240:intron 25.0%
!!! TCGCAACTTTTTAAAACATA+GGG + chr1_2:77435569-77435588 None:intergenic 25.0%
!!! ATCGCAACTTTTTAAAACAT+AGG + chr1_2:77435570-77435589 None:intergenic 25.0%
!!! GTTTTAAAAAGTTGCGATTT+TGG - chr1_2:77435572-77435591 Msa0094240:CDS 25.0%
! TTAATTAATTAAATGCCACG+TGG + chr1_2:77435710-77435729 None:intergenic 25.0%
! GAAATGATTGAAGATATTCT+GGG + chr1_2:77435912-77435931 None:intergenic 25.0%
! AAGAAAAAAGGGATTCAAAT+GGG + chr1_2:77436049-77436068 None:intergenic 25.0%
! GAAAAGGATTGAAGAAAAAA+GGG + chr1_2:77436060-77436079 None:intergenic 25.0%
! AGAAAAGGATTGAAGAAAAA+AGG + chr1_2:77436061-77436080 None:intergenic 25.0%
!! TTTTCGAAATTCAAATTAGG+TGG + chr1_2:77436267-77436286 None:intergenic 25.0%
!! ACTAATTTAGAGTTTGTTCT+GGG + chr1_2:77436417-77436436 None:intergenic 25.0%
!! AACTAATTTAGAGTTTGTTC+TGG + chr1_2:77436418-77436437 None:intergenic 25.0%
!!! AGTTTATGATTTTTGGAATG+AGG - chr1_2:77436464-77436483 Msa0094240:intron 25.0%
!!! GATGATTTTTTGAAGTTTGA+AGG - chr1_2:77436507-77436526 Msa0094240:intron 25.0%
!!! GTTTTAAAAAGTTGCGATTT+TGG + chr1_2:77435572-77435591 None:intergenic 25.0%
!!! ATCGCAACTTTTTAAAACTT+AGG - chr1_2:77436961-77436980 Msa0094240:intron 25.0%
!!! TCGCAACTTTTTAAAACTTA+GGG - chr1_2:77436962-77436981 Msa0094240:intron 25.0%
! TTATTTATATCATTTGCACC+GGG - chr1_2:77437223-77437242 Msa0094240:intron 25.0%
! AATTCATGATGTGTATAGTA+AGG + chr1_2:77437536-77437555 None:intergenic 25.0%
!!! ATTATCACACTTTTTTGTCG+TGG + chr1_2:77432443-77432462 None:intergenic 30.0%
!!! AGGTTTTTAGAATGTCCATT+TGG - chr1_2:77432480-77432499 Msa0094240:three_prime_UTR 30.0%
!! GACATTATTGCCTATTTTTC+TGG - chr1_2:77432513-77432532 Msa0094240:three_prime_UTR 30.0%
CAGAAATCATCCAGAAAAAT+AGG + chr1_2:77432526-77432545 None:intergenic 30.0%
GAAATTTGAACAACCTTATC+AGG - chr1_2:77432611-77432630 Msa0094240:CDS 30.0%
AAGTAGTGTAAGAAAACGAT+TGG + chr1_2:77432642-77432661 None:intergenic 30.0%
GAGATTGAGTGTTAAAAAGT+GGG + chr1_2:77432971-77432990 None:intergenic 30.0%
! CCACATGTATTTTACTCAAT+GGG + chr1_2:77432993-77433012 None:intergenic 30.0%
CCATTGAGTAAAATACATGT+GGG - chr1_2:77432991-77433010 Msa0094240:intron 30.0%
CTTATTGGATGAAATACATG+TGG + chr1_2:77433057-77433076 None:intergenic 30.0%
! CTTTTCAGTGTCAATTCTTA+CGG - chr1_2:77433133-77433152 Msa0094240:intron 30.0%
! TTTTCAGTGTCAATTCTTAC+GGG - chr1_2:77433134-77433153 Msa0094240:intron 30.0%
!! TCTTTTGATGACAACAACAA+TGG + chr1_2:77433438-77433457 None:intergenic 30.0%
AAAAAAACTAAGGGTTTGTC+TGG - chr1_2:77433535-77433554 Msa0094240:intron 30.0%
CTTATTTACTTGAACACTTG+TGG - chr1_2:77433573-77433592 Msa0094240:intron 30.0%
! AATTAGTCTGTTTATCCAAC+AGG - chr1_2:77433772-77433791 Msa0094240:intron 30.0%
! ATTAGTCTGTTTATCCAACA+GGG - chr1_2:77433773-77433792 Msa0094240:intron 30.0%
! TCTTAGAACTTCAACTTTTC+AGG - chr1_2:77433804-77433823 Msa0094240:intron 30.0%
TATACATTGTGGAGATAAAG+GGG + chr1_2:77434019-77434038 None:intergenic 30.0%
GTTATACATTGTGGAGATAA+AGG + chr1_2:77434021-77434040 None:intergenic 30.0%
TCTAACAAGTTACCAAATTG+AGG - chr1_2:77434125-77434144 Msa0094240:intron 30.0%
CTAACAAGTTACCAAATTGA+GGG - chr1_2:77434126-77434145 Msa0094240:intron 30.0%
!!! TTGTTTTTATGCCCTCAATT+TGG + chr1_2:77434140-77434159 None:intergenic 30.0%
TGTCACAACACAGAAATAAA+GGG + chr1_2:77434178-77434197 None:intergenic 30.0%
TTGTCACAACACAGAAATAA+AGG + chr1_2:77434179-77434198 None:intergenic 30.0%
!! AGTTTTGCTTTAGTGCTATT+TGG + chr1_2:77434231-77434250 None:intergenic 30.0%
AGATTACATTGTTGAGAAAC+AGG - chr1_2:77434314-77434333 Msa0094240:intron 30.0%
!! TGAAAATTTTGGTCTACAAG+AGG - chr1_2:77434368-77434387 Msa0094240:intron 30.0%
AATCATGAGCACAAAAAAAG+TGG + chr1_2:77434448-77434467 None:intergenic 30.0%
ATTATCACTAAGTGATCTTG+AGG - chr1_2:77434713-77434732 Msa0094240:intron 30.0%
AATCTCTGATTATTGCGAAT+TGG + chr1_2:77434835-77434854 None:intergenic 30.0%
! TTTTCCCCGATTTCAAAATA+CGG - chr1_2:77435031-77435050 Msa0094240:intron 30.0%
GTAGATCCTTTAAGTATCAA+AGG + chr1_2:77435189-77435208 None:intergenic 30.0%
!!! GCAACTTTTTAAAACATAGG+GGG + chr1_2:77435567-77435586 None:intergenic 30.0%
!!! CGCAACTTTTTAAAACATAG+GGG + chr1_2:77435568-77435587 None:intergenic 30.0%
TTGACCAAGTCAAAATCATT+GGG + chr1_2:77435662-77435681 None:intergenic 30.0%
TTTGACCAAGTCAAAATCAT+TGG + chr1_2:77435663-77435682 None:intergenic 30.0%
! GTTGATGAAGAAGAAAAGAA+AGG + chr1_2:77435858-77435877 None:intergenic 30.0%
GGAAATGATTGAAGATATTC+TGG + chr1_2:77435913-77435932 None:intergenic 30.0%
AATATGTTGTGTTGTGTTTG+TGG + chr1_2:77435953-77435972 None:intergenic 30.0%
GAAGAAAAAAGGGATTCAAA+TGG + chr1_2:77436050-77436069 None:intergenic 30.0%
! TCTTCAATCCTTTTCTTCTT+CGG - chr1_2:77436065-77436084 Msa0094240:CDS 30.0%
ATGCTTGTGGAGTTATTTAT+GGG + chr1_2:77436127-77436146 None:intergenic 30.0%
!! AGCTCTAAAACAAATCTGAA+TGG + chr1_2:77436184-77436203 None:intergenic 30.0%
TCTGTTTATGCAAAGTTTGA+AGG - chr1_2:77436305-77436324 Msa0094240:intron 30.0%
TATGCAAAGTTTGAAGGATT+TGG - chr1_2:77436311-77436330 Msa0094240:intron 30.0%
AACAAAGGGTTTGAATTTGA+AGG - chr1_2:77436345-77436364 Msa0094240:intron 30.0%
!!! CGCAACTTTTTAAAACTTAG+GGG - chr1_2:77436963-77436982 Msa0094240:intron 30.0%
!!! GCAACTTTTTAAAACTTAGG+GGG - chr1_2:77436964-77436983 Msa0094240:intron 30.0%
!! TTTTGGCTAAAATGCACTTT+TGG + chr1_2:77436990-77437009 None:intergenic 30.0%
GCTTAGTGTAGCTAAATTAT+TGG + chr1_2:77437308-77437327 None:intergenic 30.0%
!! GTTTGTTGTATACAAGTTGA+AGG - chr1_2:77437375-77437394 Msa0094240:intron 30.0%
! TGTATACAAGTTGAAGGAAA+TGG - chr1_2:77437381-77437400 Msa0094240:intron 30.0%
! GTATACAAGTTGAAGGAAAT+GGG - chr1_2:77437382-77437401 Msa0094240:intron 30.0%
CTTCTTCTTCTTCTTCTTCA+TGG - chr1_2:77432573-77432592 Msa0094240:exon 35.0%
ACGATTGGATATACCTGATA+AGG + chr1_2:77432627-77432646 None:intergenic 35.0%
!!! TTTTTTCATGAAGAGCTTCG+TGG - chr1_2:77432869-77432888 Msa0094240:intron 35.0%
GTGTTAAAAAGTGGGTCTTA+TGG + chr1_2:77432963-77432982 None:intergenic 35.0%
GGAGATTGAGTGTTAAAAAG+TGG + chr1_2:77432972-77432991 None:intergenic 35.0%
CCCATTGAGTAAAATACATG+TGG - chr1_2:77432990-77433009 Msa0094240:intron 35.0%
! CCCACATGTATTTTACTCAA+TGG + chr1_2:77432994-77433013 None:intergenic 35.0%
TCATCCAATAAGAGAGTGAA+TGG - chr1_2:77433065-77433084 Msa0094240:intron 35.0%
TACACCATTCACTCTCTTAT+TGG + chr1_2:77433072-77433091 None:intergenic 35.0%
AATAAGAGAGTGAATGGTGT+AGG - chr1_2:77433071-77433090 Msa0094240:intron 35.0%
ATAAGAGAGTGAATGGTGTA+GGG - chr1_2:77433072-77433091 Msa0094240:intron 35.0%
TTTCAGTGTCAATTCTTACG+GGG - chr1_2:77433135-77433154 Msa0094240:intron 35.0%
! AATTGGTTCCCAAGACTAAT+CGG - chr1_2:77433214-77433233 Msa0094240:intron 35.0%
AAACTACTTATGACATGCCT+GGG - chr1_2:77433377-77433396 Msa0094240:intron 35.0%
ATCAACTAAAAACAACTCCC+AGG + chr1_2:77433397-77433416 None:intergenic 35.0%
!! GTTGAAGTTCTAAGATGCTT+AGG + chr1_2:77433799-77433818 None:intergenic 35.0%
! AAGAAGCAGAATTCAAGTTC+AGG - chr1_2:77434049-77434068 Msa0094240:intron 35.0%
ACAATGACTACTGTTGGATA+TGG - chr1_2:77434195-77434214 Msa0094240:intron 35.0%
TGAAGACATAAATGCATGCA+AGG + chr1_2:77434254-77434273 None:intergenic 35.0%
! AAAATTTTCAGCCTTGCACA+TGG + chr1_2:77434358-77434377 None:intergenic 35.0%
! ATGTGCAAGGCTGAAAATTT+TGG - chr1_2:77434357-77434376 Msa0094240:intron 35.0%
!!! TTTTTTGTGCTCATGATTGC+AGG - chr1_2:77434450-77434469 Msa0094240:intron 35.0%
ACTCTATTGTGTTTGTTCCA+CGG - chr1_2:77434518-77434537 Msa0094240:intron 35.0%
AAACACTGCAAAAATCCTAC+CGG + chr1_2:77434586-77434605 None:intergenic 35.0%
! GTAGGATTTTTGCAGTGTTT+TGG - chr1_2:77434586-77434605 Msa0094240:intron 35.0%
TGAAGATAGACAAAGATCAC+TGG - chr1_2:77434668-77434687 Msa0094240:intron 35.0%
ACAAAGATCACTGGCAAAAA+TGG - chr1_2:77434677-77434696 Msa0094240:intron 35.0%
CACTCATAAGTTATGAAGCA+CGG - chr1_2:77434898-77434917 Msa0094240:intron 35.0%
TTTCCCCGATTTCAAAATAC+GGG - chr1_2:77435032-77435051 Msa0094240:intron 35.0%
!!! ATACCCGTATTTTGAAATCG+GGG + chr1_2:77435038-77435057 None:intergenic 35.0%
!!! CATACCCGTATTTTGAAATC+GGG + chr1_2:77435039-77435058 None:intergenic 35.0%
!!! CCATACCCGTATTTTGAAAT+CGG + chr1_2:77435040-77435059 None:intergenic 35.0%
CGATTTCAAAATACGGGTAT+GGG - chr1_2:77435038-77435057 Msa0094240:intron 35.0%
TGTTAAAGTGAGCGTATTGT+TGG - chr1_2:77435230-77435249 Msa0094240:intron 35.0%
AAAATTATTCAATGCGGGGA+CGG - chr1_2:77435310-77435329 Msa0094240:intron 35.0%
TCGGGTAAGTATATGAGAAT+CGG - chr1_2:77435412-77435431 Msa0094240:CDS 35.0%
TATCAGATACACGTATCGTT+AGG + chr1_2:77435489-77435508 None:intergenic 35.0%
TGACCAAGTCAAAATCATTG+GGG + chr1_2:77435661-77435680 None:intergenic 35.0%
AAAAGAAAGGAAGAGGAAGA+AGG + chr1_2:77435845-77435864 None:intergenic 35.0%
GAAGAAGAAAAGAAAGGAAG+AGG + chr1_2:77435852-77435871 None:intergenic 35.0%
TGATTGAAGATATTCTGGGT+TGG + chr1_2:77435908-77435927 None:intergenic 35.0%
!!! GTGGTTGTTTTTGATGAAGA+AGG + chr1_2:77435934-77435953 None:intergenic 35.0%
! CGCTTGATTTGAGAATATGA+GGG + chr1_2:77436091-77436110 None:intergenic 35.0%
! ACGCTTGATTTGAGAATATG+AGG + chr1_2:77436092-77436111 None:intergenic 35.0%
CATGCTTGTGGAGTTATTTA+TGG + chr1_2:77436128-77436147 None:intergenic 35.0%
TTGAAGGATTTGGAAGAAGA+AGG - chr1_2:77436321-77436340 Msa0094240:intron 35.0%
TTGGAAGAAGAAGGTAACAA+AGG - chr1_2:77436330-77436349 Msa0094240:intron 35.0%
TGGAAGAAGAAGGTAACAAA+GGG - chr1_2:77436331-77436350 Msa0094240:intron 35.0%
! TTTGAATTTGAAGGTGCAAG+TGG - chr1_2:77436354-77436373 Msa0094240:intron 35.0%
!!! TTTTTGGAATGAGGAAGATG+AGG - chr1_2:77436473-77436492 Msa0094240:intron 35.0%
! TCTTGTTCCTTGTTTCTTTG+AGG - chr1_2:77436541-77436560 Msa0094240:intron 35.0%
TGACCAGGTCAAAATTAAAG+AGG - chr1_2:77436870-77436889 Msa0094240:intron 35.0%
GACCAGGTCAAAATTAAAGA+GGG - chr1_2:77436871-77436890 Msa0094240:intron 35.0%
TAAACAATCACACGTATCTG+AGG - chr1_2:77437045-77437064 Msa0094240:intron 35.0%
ACTCCTTTGATATGTATCGA+CGG - chr1_2:77437137-77437156 Msa0094240:intron 35.0%
TCACTGCTGAAATATCTTCT+TGG + chr1_2:77437417-77437436 None:intergenic 35.0%
AGAAGATATTTCAGCAGTGA+TGG - chr1_2:77437417-77437436 Msa0094240:intron 35.0%
AAACTAGACTGTGATCAATC+AGG - chr1_2:77437451-77437470 Msa0094240:intron 35.0%
TAAGGCAGATGATGTTAAGA+TGG + chr1_2:77437518-77437537 None:intergenic 35.0%
!!! ATCACACTTTTTTGTCGTGG+TGG + chr1_2:77432440-77432459 None:intergenic 40.0%
! GAATGTCCATTTGGAAGCAT+CGG - chr1_2:77432489-77432508 Msa0094240:three_prime_UTR 40.0%
! GAAGAAGAAGTTGTCGATTG+AGG + chr1_2:77432554-77432573 None:intergenic 40.0%
!! AGTAAGGACCGATTAGTCTT+GGG + chr1_2:77433225-77433244 None:intergenic 40.0%
AAGACTAATCGGTCCTTACT+GGG - chr1_2:77433225-77433244 Msa0094240:intron 40.0%
TCACTCTTTCTTACCCAGTA+AGG + chr1_2:77433241-77433260 None:intergenic 40.0%
AGGCTGTTTGAGAGAGTTTA+TGG - chr1_2:77433354-77433373 Msa0094240:intron 40.0%
GAAACTACTTATGACATGCC+TGG - chr1_2:77433376-77433395 Msa0094240:intron 40.0%
AACTAAGGGTTTGTCTGGAT+TGG - chr1_2:77433540-77433559 Msa0094240:intron 40.0%
TACTTGAACACTTGTGGTCA+TGG - chr1_2:77433579-77433598 Msa0094240:intron 40.0%
ACTTGAACACTTGTGGTCAT+GGG - chr1_2:77433580-77433599 Msa0094240:intron 40.0%
AGCTATTGCTTTCAGAGTCA+AGG - chr1_2:77433878-77433897 Msa0094240:intron 40.0%
GCTATTGCTTTCAGAGTCAA+GGG - chr1_2:77433879-77433898 Msa0094240:intron 40.0%
TTCTTCAGAGAAGAAGACTG+CGG - chr1_2:77433932-77433951 Msa0094240:intron 40.0%
AATCTGCAGCAAGAACAGAA+TGG - chr1_2:77433982-77434001 Msa0094240:intron 40.0%
ATTGTGGAGATAAAGGGGTT+TGG + chr1_2:77434014-77434033 None:intergenic 40.0%
TTGTGTTTAGCAGCATACCT+AGG - chr1_2:77434081-77434100 Msa0094240:intron 40.0%
GTTGTGACAATGACTACTGT+TGG - chr1_2:77434189-77434208 Msa0094240:intron 40.0%
GCATGCATTTATGTCTTCAC+TGG - chr1_2:77434255-77434274 Msa0094240:intron 40.0%
CATTTATGTCTTCACTGGCA+TGG - chr1_2:77434260-77434279 Msa0094240:intron 40.0%
ATAACCTAAAGTAGTGACCG+TGG + chr1_2:77434538-77434557 None:intergenic 40.0%
! ACGGTCACTACTTTAGGTTA+TGG - chr1_2:77434537-77434556 Msa0094240:intron 40.0%
! CGGTCACTACTTTAGGTTAT+GGG - chr1_2:77434538-77434557 Msa0094240:intron 40.0%
! GGTCACTACTTTAGGTTATG+GGG - chr1_2:77434539-77434558 Msa0094240:intron 40.0%
AAAAGACTGAGCCAAGCAAA+TGG + chr1_2:77434625-77434644 None:intergenic 40.0%
TTGATGGAGACAAAGTTGTC+AGG - chr1_2:77434745-77434764 Msa0094240:intron 40.0%
AAAACCCGTCAAATTGGGTT+TGG + chr1_2:77434977-77434996 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG + chr1_2:77435002-77435021 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG - chr1_2:77435002-77435021 Msa0094240:intron 40.0%
CCGATTTCAAAATACGGGTA+TGG - chr1_2:77435037-77435056 Msa0094240:intron 40.0%
TTCAAAATACGGGTATGGGA+CGG - chr1_2:77435042-77435061 Msa0094240:intron 40.0%
! TTTACATTTGGGACGGGTTT+GGG + chr1_2:77435103-77435122 None:intergenic 40.0%
!! TTTTACATTTGGGACGGGTT+TGG + chr1_2:77435104-77435123 None:intergenic 40.0%
AAATTATTCAATGCGGGGAC+GGG - chr1_2:77435311-77435330 Msa0094240:intron 40.0%
ATTCAATTTCTCATCCCCGT+TGG - chr1_2:77435375-77435394 Msa0094240:CDS 40.0%
TTCAATTTCTCATCCCCGTT+GGG - chr1_2:77435376-77435395 Msa0094240:CDS 40.0%
CGGGTAAGTATATGAGAATC+GGG - chr1_2:77435413-77435432 Msa0094240:CDS 40.0%
GTATATGAGAATCGGGTATG+TGG - chr1_2:77435420-77435439 Msa0094240:CDS 40.0%
GACCAAGTCAAAATCATTGG+GGG + chr1_2:77435660-77435679 None:intergenic 40.0%
!!! TTTTGACTTGGTCAAAGCAC+AGG - chr1_2:77435667-77435686 Msa0094240:CDS 40.0%
! TAGAAAGAGAAGCATGCTTG+TGG + chr1_2:77436140-77436159 None:intergenic 40.0%
ACTGTGTAAGAGAAGAGAAG+AGG - chr1_2:77436204-77436223 Msa0094240:CDS 40.0%
GCATGGAAGAAGAGAGAAAA+CGG + chr1_2:77436232-77436251 None:intergenic 40.0%
! TGTTCCTTGTTTCTTTGAGG+AGG - chr1_2:77436544-77436563 Msa0094240:intron 40.0%
! GTTCCTTGTTTCTTTGAGGA+GGG - chr1_2:77436545-77436564 Msa0094240:intron 40.0%
AAACCCTCCTCAAAGAAACA+AGG + chr1_2:77436551-77436570 None:intergenic 40.0%
! TTGTTTCTTTGAGGAGGGTT+TGG - chr1_2:77436550-77436569 Msa0094240:intron 40.0%
GGAAAGAGAAGAGCAGATTA+TGG - chr1_2:77436659-77436678 Msa0094240:intron 40.0%
AAGAGAAGAGCAGATTATGG+TGG - chr1_2:77436662-77436681 Msa0094240:intron 40.0%
AGAGAAGAGCAGATTATGGT+GGG - chr1_2:77436663-77436682 Msa0094240:intron 40.0%
AAAGGTTAGAGAGAGAGACT+AGG - chr1_2:77436694-77436713 Msa0094240:intron 40.0%
! TTTTGACCTGGTCAAAACCA+AGG + chr1_2:77436864-77436883 None:intergenic 40.0%
AGGGCCTATGAATTGCAAAA+GGG - chr1_2:77436890-77436909 Msa0094240:intron 40.0%
TATGATCTTACTGCATCTCC+CGG + chr1_2:77437244-77437263 None:intergenic 40.0%
TCAACGCAATACTAGTGATG+AGG + chr1_2:77437276-77437295 None:intergenic 40.0%
!!! CTTTTTTGTCGTGGTGGACT+AGG + chr1_2:77432434-77432453 None:intergenic 45.0%
ATGTCTCCGATGCTTCCAAA+TGG + chr1_2:77432498-77432517 None:intergenic 45.0%
GTGGTTCAGACTTCAGAACA+TGG - chr1_2:77432888-77432907 Msa0094240:intron 45.0%
ACATGTGGGTCCCATTGTTA+CGG - chr1_2:77433005-77433024 Msa0094240:intron 45.0%
TTAAATGTGCCCCTTGCAAG+CGG - chr1_2:77433184-77433203 Msa0094240:intron 45.0%
!! CAGTAAGGACCGATTAGTCT+TGG + chr1_2:77433226-77433245 None:intergenic 45.0%
CAAGACTAATCGGTCCTTAC+TGG - chr1_2:77433224-77433243 Msa0094240:intron 45.0%
ACTGGGTAAGAAAGAGTGAG+TGG - chr1_2:77433242-77433261 Msa0094240:intron 45.0%
TACCGGTAAAACCACTTGTG+AGG - chr1_2:77433334-77433353 Msa0094240:intron 45.0%
!! AGCCTCACAAGTGGTTTTAC+CGG + chr1_2:77433339-77433358 None:intergenic 45.0%
! GCAGTCTTCTTCTCTGAAGA+AGG + chr1_2:77433933-77433952 None:intergenic 45.0%
! AACATAAGGTACCTGTGCCT+AGG + chr1_2:77434101-77434120 None:intergenic 45.0%
TGTTCCACGGTCACTACTTT+AGG - chr1_2:77434531-77434550 Msa0094240:intron 45.0%
ATTGAGCAGCACCATTTGCT+TGG - chr1_2:77434611-77434630 Msa0094240:intron 45.0%
AGCAGACACTTCACAATTGC+AGG - chr1_2:77434799-77434818 Msa0094240:intron 45.0%
GCAGACACTTCACAATTGCA+GGG - chr1_2:77434800-77434819 Msa0094240:intron 45.0%
GGCAACAAAACCCATACCTA+CGG - chr1_2:77434938-77434957 Msa0094240:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG + chr1_2:77434967-77434986 None:intergenic 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG + chr1_2:77434971-77434990 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG + chr1_2:77434972-77434991 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG - chr1_2:77434969-77434988 Msa0094240:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG - chr1_2:77434970-77434989 Msa0094240:intron 45.0%
TACCCAAACCCAGTCAAAAC+GGG + chr1_2:77435001-77435020 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG - chr1_2:77435001-77435020 Msa0094240:intron 45.0%
TCAAAATACGGGTATGGGAC+GGG - chr1_2:77435043-77435062 Msa0094240:intron 45.0%
ATGAGAATCGGGTATGTGGA+TGG - chr1_2:77435424-77435443 Msa0094240:CDS 45.0%
TGAGAATCGGGTATGTGGAT+GGG - chr1_2:77435425-77435444 Msa0094240:CDS 45.0%
TATCGTTAGGCATGGCAATG+GGG + chr1_2:77435476-77435495 None:intergenic 45.0%
GTATCGTTAGGCATGGCAAT+GGG + chr1_2:77435477-77435496 None:intergenic 45.0%
GATACACGTATCGTTAGGCA+TGG + chr1_2:77435484-77435503 None:intergenic 45.0%
TTGCAAAAGGGGGTGAAGTT+GGG + chr1_2:77436902-77436921 None:intergenic 45.0%
! CACCCCCTTTTGCAACTTAT+AGG - chr1_2:77435634-77435653 Msa0094240:CDS 45.0%
GGCCTATAAGTTGCAAAAGG+GGG + chr1_2:77435639-77435658 None:intergenic 45.0%
GGGCCTATAAGTTGCAAAAG+GGG + chr1_2:77435640-77435659 None:intergenic 45.0%
GGGGCCTATAAGTTGCAAAA+GGG + chr1_2:77435641-77435660 None:intergenic 45.0%
AAGAGAGAAACGATGAGGTG+GGG + chr1_2:77435818-77435837 None:intergenic 45.0%
GAAGAGAGAAACGATGAGGT+GGG + chr1_2:77435819-77435838 None:intergenic 45.0%
GAAAGGAAGAGGAAGAAGGA+GGG + chr1_2:77435841-77435860 None:intergenic 45.0%
AGAAAGGAAGAGGAAGAAGG+AGG + chr1_2:77435842-77435861 None:intergenic 45.0%
TATGAGGGCCGAAGAAGAAA+AGG + chr1_2:77436076-77436095 None:intergenic 45.0%
! GAATTTGAAGGTGCAAGTGG+TGG - chr1_2:77436357-77436376 Msa0094240:intron 45.0%
TGGAATGAGGAAGATGAGGA+AGG - chr1_2:77436477-77436496 Msa0094240:intron 45.0%
TGAGGAGGGTTTGGATTTCA+CGG - chr1_2:77436559-77436578 Msa0094240:intron 45.0%
TAGTGGTGAGCGATCTTTGA+GGG - chr1_2:77436586-77436605 Msa0094240:intron 45.0%
ATGAGATAGGTAGTTCGTCG+CGG - chr1_2:77436634-77436653 Msa0094240:intron 45.0%
GAGAAGAGCAGATTATGGTG+GGG - chr1_2:77436664-77436683 Msa0094240:intron 45.0%
AGAAGAGCAGATTATGGTGG+GGG - chr1_2:77436665-77436684 Msa0094240:intron 45.0%
TAGGTTAGAGAGAGAGAGAG+AGG - chr1_2:77436713-77436732 Msa0094240:intron 45.0%
! TCAAAACCAAGGTGCCCAAT+AGG + chr1_2:77436853-77436872 None:intergenic 45.0%
!! GGCCCTCTTTAATTTTGACC+TGG + chr1_2:77436876-77436895 None:intergenic 45.0%
GAGGGCCTATGAATTGCAAA+AGG - chr1_2:77436889-77436908 Msa0094240:intron 45.0%
GGGCCTATGAATTGCAAAAG+GGG - chr1_2:77436891-77436910 Msa0094240:intron 45.0%
GGCCTATGAATTGCAAAAGG+GGG - chr1_2:77436892-77436911 Msa0094240:intron 45.0%
! CACCCCCTTTTGCAATTCAT+AGG + chr1_2:77436897-77436916 None:intergenic 45.0%
ATTGCAAAAGGGGGTGAAGT+TGG - chr1_2:77436901-77436920 Msa0094240:intron 45.0%
TTGCAAAAGGGGGTGAAGTT+GGG - chr1_2:77436902-77436921 Msa0094240:intron 45.0%
ACGCCGTCGATACATATCAA+AGG + chr1_2:77437143-77437162 None:intergenic 45.0%
ACAACAAACTCTGCAGCACT+GGG + chr1_2:77437364-77437383 None:intergenic 45.0%
TACAACAAACTCTGCAGCAC+TGG + chr1_2:77437365-77437384 None:intergenic 45.0%
!! ACATTTATAAAAAAAAATAA+AGG - chr1_2:77435524-77435543 Msa0094240:CDS 5.0%
!! ATAAAAAAAAAAGAATTAAA+AGG - chr1_2:77435782-77435801 Msa0094240:CDS 5.0%
!! TAAAAAAAAAAGAATTAAAA+GGG - chr1_2:77435783-77435802 Msa0094240:CDS 5.0%
!! TGTCGTGGTGGACTAGGAAT+AGG + chr1_2:77432428-77432447 None:intergenic 50.0%
CATGTGGGTCCCATTGTTAC+GGG - chr1_2:77433006-77433025 Msa0094240:intron 50.0%
CTCTCAAACAGCCTCACAAG+TGG + chr1_2:77433348-77433367 None:intergenic 50.0%
CTAAGATGCTTAGGCCCTGT+TGG + chr1_2:77433790-77433809 None:intergenic 50.0%
GTGGAGATAAAGGGGTTTGG+AGG + chr1_2:77434011-77434030 None:intergenic 50.0%
TTAGCAGCATACCTAGGCAC+AGG - chr1_2:77434087-77434106 Msa0094240:intron 50.0%
TCTTGCTGAGTCCATGTGCA+AGG - chr1_2:77434344-77434363 Msa0094240:intron 50.0%
CTTGAGGCAGCAGATCTTGA+TGG - chr1_2:77434729-77434748 Msa0094240:intron 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG + chr1_2:77434968-77434987 None:intergenic 50.0%
CGGGGAAAACCCGTCAAATT+GGG + chr1_2:77434982-77435001 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG + chr1_2:77434983-77435002 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG - chr1_2:77434990-77435009 Msa0094240:intron 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG - chr1_2:77434995-77435014 Msa0094240:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG - chr1_2:77434996-77435015 Msa0094240:intron 50.0%
ACCCAAACCCAGTCAAAACG+GGG + chr1_2:77435000-77435019 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG - chr1_2:77435007-77435026 Msa0094240:intron 50.0%
CTGGGTTTGGGTATGGGTAT+GGG - chr1_2:77435008-77435027 Msa0094240:intron 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG + chr1_2:77435097-77435116 None:intergenic 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG + chr1_2:77435098-77435117 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - chr1_2:77435381-77435400 Msa0094240:CDS 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - chr1_2:77435382-77435401 Msa0094240:CDS 50.0%
ATACCCTACCCATACCCAAC+GGG + chr1_2:77435393-77435412 None:intergenic 50.0%
GATACCCTACCCATACCCAA+CGG + chr1_2:77435394-77435413 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAT+CGG - chr1_2:77435393-77435412 Msa0094240:CDS 50.0%
! TTGGGTATGGGTAGGGTATC+GGG - chr1_2:77435394-77435413 Msa0094240:CDS 50.0%
GAGAATCGGGTATGTGGATG+GGG - chr1_2:77435426-77435445 Msa0094240:CDS 50.0%
CGTATCGTTAGGCATGGCAA+TGG + chr1_2:77435478-77435497 None:intergenic 50.0%
TGCAAAAGGGGGTGAAGTTG+GGG + chr1_2:77436903-77436922 None:intergenic 50.0%
GTTGCAAAAGGGGGTGAAGT+TGG + chr1_2:77435630-77435649 None:intergenic 50.0%
GGGGGCCTATAAGTTGCAAA+AGG + chr1_2:77435642-77435661 None:intergenic 50.0%
!!! GGCCCCCAATGATTTTGACT+TGG - chr1_2:77435655-77435674 Msa0094240:CDS 50.0%
!! TGACTTGGTCAAAGCACAGG+TGG - chr1_2:77435670-77435689 Msa0094240:CDS 50.0%
AGAGAGAAACGATGAGGTGG+GGG + chr1_2:77435817-77435836 None:intergenic 50.0%
GGAAGAGAGAAACGATGAGG+TGG + chr1_2:77435820-77435839 None:intergenic 50.0%
GAGGGAAGAGAGAAACGATG+AGG + chr1_2:77435823-77435842 None:intergenic 50.0%
GGTGGTTGTGAAATCGAGCA+TGG + chr1_2:77436249-77436268 None:intergenic 50.0%
TTGGATTTCACGGTGGCTAG+TGG - chr1_2:77436569-77436588 Msa0094240:intron 50.0%
CTAGTGGTGAGCGATCTTTG+AGG - chr1_2:77436585-77436604 Msa0094240:intron 50.0%
TGGAGGAGGAGGAATGAGAT+AGG - chr1_2:77436621-77436640 Msa0094240:intron 50.0%
! TTATGGTGGGGGTAGGTGAA+AGG - chr1_2:77436676-77436695 Msa0094240:intron 50.0%
! AAACCAAGGTGCCCAATAGG+AGG + chr1_2:77436850-77436869 None:intergenic 50.0%
TGCAAAAGGGGGTGAAGTTG+GGG - chr1_2:77436903-77436922 Msa0094240:intron 50.0%
TCTTCACCGCGATGAGTGCT+AGG - chr1_2:77432929-77432948 Msa0094240:intron 55.0%
CTTCACCGCGATGAGTGCTA+GGG - chr1_2:77432930-77432949 Msa0094240:intron 55.0%
AGTGTCCCTAGCACTCATCG+CGG + chr1_2:77432938-77432957 None:intergenic 55.0%
GGGGCTACTCCCGTAACAAT+GGG + chr1_2:77433018-77433037 None:intergenic 55.0%
TGGGGCTACTCCCGTAACAA+TGG + chr1_2:77433019-77433038 None:intergenic 55.0%
AGTAGCCCCACGTAAAGTGG+TGG - chr1_2:77433029-77433048 Msa0094240:intron 55.0%
GTAGCCCCACGTAAAGTGGT+GGG - chr1_2:77433030-77433049 Msa0094240:intron 55.0%
TAGCCCCACGTAAAGTGGTG+GGG - chr1_2:77433031-77433050 Msa0094240:intron 55.0%
ATTCCACCGTCCGCTTGCAA+GGG + chr1_2:77433197-77433216 None:intergenic 55.0%
AATTCCACCGTCCGCTTGCA+AGG + chr1_2:77433198-77433217 None:intergenic 55.0%
TTGCAAGCGGACGGTGGAAT+TGG - chr1_2:77433197-77433216 Msa0094240:intron 55.0%
GTCTTCACTGGCATGGCTCT+CGG - chr1_2:77434267-77434286 Msa0094240:intron 55.0%
AAGAGCTTCTCGACTGCTGC+CGG - chr1_2:77434564-77434583 Msa0094240:intron 55.0%
GAAGCACGGACACGATACGT+AGG - chr1_2:77434912-77434931 Msa0094240:intron 55.0%
ACGGACACGATACGTAGGCA+TGG - chr1_2:77434917-77434936 Msa0094240:intron 55.0%
GGGTGGGTAACCGTAGGTAT+GGG + chr1_2:77434951-77434970 None:intergenic 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG - chr1_2:77434989-77435008 Msa0094240:intron 55.0%
TACGGGTATGGGACGGGTAA+CGG - chr1_2:77435049-77435068 Msa0094240:intron 55.0%
!! GGGACGGGTAACGGGTATAT+AGG - chr1_2:77435058-77435077 Msa0094240:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG + chr1_2:77435086-77435105 None:intergenic 55.0%
ACGGGTTTGGGTATGGGTTC+GGG + chr1_2:77435091-77435110 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG + chr1_2:77435092-77435111 None:intergenic 55.0%
TATTCAATGCGGGGACGGGA+TGG - chr1_2:77435315-77435334 Msa0094240:intron 55.0%
ATTCAATGCGGGGACGGGAT+GGG - chr1_2:77435316-77435335 Msa0094240:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - chr1_2:77435387-77435406 Msa0094240:CDS 55.0%
TACCCTACCCATACCCAACG+GGG + chr1_2:77435392-77435411 None:intergenic 55.0%
ATCGGGTATGTGGATGGGGA+AGG - chr1_2:77435430-77435449 Msa0094240:CDS 55.0%
CAAAAGGGGGTGAAGTTGGG+GGG + chr1_2:77436905-77436924 None:intergenic 55.0%
GCAAAAGGGGGTGAAGTTGG+GGG + chr1_2:77436904-77436923 None:intergenic 55.0%
AAGCACAGGTGGCCAGTAGA+TGG - chr1_2:77435681-77435700 Msa0094240:CDS 55.0%
GGAGGGTTTGGATTTCACGG+TGG - chr1_2:77436562-77436581 Msa0094240:intron 55.0%
! TGGTGAGCGATCTTTGAGGG+CGG - chr1_2:77436589-77436608 Msa0094240:intron 55.0%
! ATCTTTGAGGGCGGTGGTTG+AGG - chr1_2:77436598-77436617 Msa0094240:intron 55.0%
AGATAGGTAGTTCGTCGCGG+CGG - chr1_2:77436637-77436656 Msa0094240:intron 55.0%
! GAGCAGATTATGGTGGGGGT+AGG - chr1_2:77436669-77436688 Msa0094240:intron 55.0%
TCCACGTGGCATCCTCCTAT+TGG - chr1_2:77436835-77436854 Msa0094240:intron 55.0%
CCACGTGGCATCCTCCTATT+GGG - chr1_2:77436836-77436855 Msa0094240:intron 55.0%
CATCCTCCTATTGGGCACCT+TGG - chr1_2:77436844-77436863 Msa0094240:intron 55.0%
!!! TGGGCACCTTGGTTTTGACC+AGG - chr1_2:77436855-77436874 Msa0094240:intron 55.0%
GCAAAAGGGGGTGAAGTTGG+GGG - chr1_2:77436904-77436923 Msa0094240:intron 55.0%
CAAAAGGGGGTGAAGTTGGG+GGG - chr1_2:77436905-77436924 Msa0094240:intron 55.0%
GGGAGTAGCCCCACGTAAAG+TGG - chr1_2:77433026-77433045 Msa0094240:intron 60.0%
TGGCCCCACCACTTTACGTG+GGG + chr1_2:77433037-77433056 None:intergenic 60.0%
GTGGCCCCACCACTTTACGT+GGG + chr1_2:77433038-77433057 None:intergenic 60.0%
TGTGGCCCCACCACTTTACG+TGG + chr1_2:77433039-77433058 None:intergenic 60.0%
ATGTGCCCCTTGCAAGCGGA+CGG - chr1_2:77433188-77433207 Msa0094240:intron 60.0%
TTCCACCGTCCGCTTGCAAG+GGG + chr1_2:77433196-77433215 None:intergenic 60.0%
CAGAGAAGAAGACTGCGGCG+TGG - chr1_2:77433937-77433956 Msa0094240:intron 60.0%
AGAAGAAGACTGCGGCGTGG+CGG - chr1_2:77433940-77433959 Msa0094240:intron 60.0%
TTCACTGGCATGGCTCTCGG+TGG - chr1_2:77434270-77434289 Msa0094240:intron 60.0%
CGGGTGGGTAACCGTAGGTA+TGG + chr1_2:77434952-77434971 None:intergenic 60.0%
! TGGTTCGGGTGGGTAACCGT+AGG + chr1_2:77434957-77434976 None:intergenic 60.0%
ACGGGTATGGGACGGGTAAC+GGG - chr1_2:77435050-77435069 Msa0094240:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG + chr1_2:77435087-77435106 None:intergenic 60.0%
CGGGTTTGGGTATGGGTTCG+GGG + chr1_2:77435090-77435109 None:intergenic 60.0%
TTCAATGCGGGGACGGGATG+GGG - chr1_2:77435317-77435336 Msa0094240:intron 60.0%
ATACCCAAACCCGTCGGGGA+CGG - chr1_2:77435345-77435364 Msa0094240:CDS 60.0%
CATCCCCGTTGGGTATGGGT+AGG - chr1_2:77435386-77435405 Msa0094240:CDS 60.0%
TTAGGCATGGCAATGGGGCG+GGG + chr1_2:77435471-77435490 None:intergenic 60.0%
GTTAGGCATGGCAATGGGGC+GGG + chr1_2:77435472-77435491 None:intergenic 60.0%
CGTTAGGCATGGCAATGGGG+CGG + chr1_2:77435473-77435492 None:intergenic 60.0%
GAGAAACGATGAGGTGGGGG+TGG + chr1_2:77435814-77435833 None:intergenic 60.0%
! TGAGCGATCTTTGAGGGCGG+TGG - chr1_2:77436592-77436611 Msa0094240:intron 60.0%
TTTGAGGGCGGTGGTTGAGG+TGG - chr1_2:77436601-77436620 Msa0094240:intron 60.0%
GATAGGTAGTTCGTCGCGGC+GGG - chr1_2:77436638-77436657 Msa0094240:intron 60.0%
CCCAATAGGAGGATGCCACG+TGG + chr1_2:77436839-77436858 None:intergenic 60.0%
! CACACGTATCTGAGGCGTGC+TGG - chr1_2:77437053-77437072 Msa0094240:intron 60.0%
! GAGACGTGTCGACGGCGTAT+CGG - chr1_2:77437075-77437094 Msa0094240:intron 60.0%
GCTTCTCGACTGCTGCCGGT+AGG - chr1_2:77434568-77434587 Msa0094240:intron 65.0%
GCGGGGATACCCAAACCCGT+CGG - chr1_2:77435339-77435358 Msa0094240:CDS 65.0%
CGGGGATACCCAAACCCGTC+GGG - chr1_2:77435340-77435359 Msa0094240:CDS 65.0%
GGGGATACCCAAACCCGTCG+GGG - chr1_2:77435341-77435360 Msa0094240:CDS 65.0%
TACCCAAACCCGTCGGGGAC+GGG - chr1_2:77435346-77435365 Msa0094240:CDS 65.0%
AATCCCATCCCCGTCCCCGA+CGG + chr1_2:77435358-77435377 None:intergenic 65.0%
GCCAGTAGATGGACGCCACG+TGG - chr1_2:77435692-77435711 Msa0094240:CDS 65.0%
GCCACGTGGCGTCCATCTAC+TGG + chr1_2:77435696-77435715 None:intergenic 65.0%
GGTGGTTGAGGTGGAGGAGG+AGG - chr1_2:77436610-77436629 Msa0094240:intron 65.0%
GCGTGCTGGAGACGTGTCGA+CGG - chr1_2:77437067-77437086 Msa0094240:intron 65.0%
TGCCCCTTGCAAGCGGACGG+TGG - chr1_2:77433191-77433210 Msa0094240:intron 70.0%
AATGCGGGGACGGGATGGGG+CGG - chr1_2:77435320-77435339 Msa0094240:intron 70.0%
ACCCAAACCCGTCGGGGACG+GGG - chr1_2:77435347-77435366 Msa0094240:CDS 70.0%
! TCCCCGTCCCCGACGGGTTT+GGG + chr1_2:77435351-77435370 None:intergenic 70.0%
! ATCCCCGTCCCCGACGGGTT+TGG + chr1_2:77435352-77435371 None:intergenic 70.0%
AAACCCGTCGGGGACGGGGA+TGG - chr1_2:77435351-77435370 Msa0094240:CDS 70.0%
AACCCGTCGGGGACGGGGAT+GGG - chr1_2:77435352-77435371 Msa0094240:CDS 70.0%
ATCCCATCCCCGTCCCCGAC+GGG + chr1_2:77435357-77435376 None:intergenic 70.0%
CAATGGGGCGGGGTGGGGAT+GGG + chr1_2:77435461-77435480 None:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+GGG + chr1_2:77435466-77435485 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG + chr1_2:77435467-77435486 None:intergenic 70.0%
AGGGGGTGAAGTTGGGGGGC+TGG + chr1_2:77436909-77436928 None:intergenic 70.0%
GAGGGCGGTGGTTGAGGTGG+AGG - chr1_2:77436604-77436623 Msa0094240:intron 70.0%
GGCGGTGGTTGAGGTGGAGG+AGG - chr1_2:77436607-77436626 Msa0094240:intron 70.0%
AGGGGGTGAAGTTGGGGGGC+TGG - chr1_2:77436909-77436928 Msa0094240:intron 70.0%
ATGCGGGGACGGGATGGGGC+GGG - chr1_2:77435321-77435340 Msa0094240:intron 75.0%
GCAATGGGGCGGGGTGGGGA+TGG + chr1_2:77435462-77435481 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG + chr1_2:77435468-77435487 None:intergenic 75.0%
! TGCGGGGACGGGATGGGGCG+GGG - chr1_2:77435322-77435341 Msa0094240:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77432404 77437697 77432404 ID=Msa0094240;Name=Msa0094240
chr1_2 mRNA 77432404 77437697 77432404 ID=Msa0094240-mRNA-1;Parent=Msa0094240;Name=Msa0094240-mRNA-1;_AED=0.26;_eAED=0.26;_QI=259|1|1|1|0.5|0.66|3|184|352
chr1_2 exon 77432404 77432735 77432404 ID=Msa0094240-mRNA-1:exon:27452;Parent=Msa0094240-mRNA-1
chr1_2 exon 77435335 77436275 77435335 ID=Msa0094240-mRNA-1:exon:27451;Parent=Msa0094240-mRNA-1
chr1_2 exon 77437469 77437697 77437469 ID=Msa0094240-mRNA-1:exon:27450;Parent=Msa0094240-mRNA-1
chr1_2 five_prime_UTR 77437469 77437697 77437469 ID=Msa0094240-mRNA-1:five_prime_utr;Parent=Msa0094240-mRNA-1
chr1_2 five_prime_UTR 77436246 77436275 77436246 ID=Msa0094240-mRNA-1:five_prime_utr;Parent=Msa0094240-mRNA-1
chr1_2 CDS 77435335 77436245 77435335 ID=Msa0094240-mRNA-1:cds;Parent=Msa0094240-mRNA-1
chr1_2 CDS 77432588 77432735 77432588 ID=Msa0094240-mRNA-1:cds;Parent=Msa0094240-mRNA-1
chr1_2 three_prime_UTR 77432404 77432587 77432404 ID=Msa0094240-mRNA-1:three_prime_utr;Parent=Msa0094240-mRNA-1
Gene Sequence

>Msa0094240

ATGGGCAGTGATGAAGCTCAACAGCTATTGCTTTCAGAGTCAAGGGAACATTCTCATCTCAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACTGCGGCGTGGCGGAACTTCAGAGACAGATATCAATCTGCAGCAAGAACAGAATGGTGTCCTCCAAACCCCTTTATCTCCACAATGTATAACTGATAAACAAGAAGCAGAATTCAAGTTCAGGCTAGTGTTCTTGTGTTTAGCAGCATACCTAGGCACAGGTACCTTATGTTTCTATCTAACAAGTTACCAAATTGAGGGCATAAAAACAAATAATTTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCAAATAGCACTAAAGCAAAACTCCTTGCATGCATTTATGTCTTCACTGGCATGGCTCTCGGTGGCTTAATTCTTAGCAAAGCAGCAGATTACATTGTTGAGAAACAGGAAATATTTCTTGCTGAGTCCATGTGCAAGGCTGAAAATTTTGGTCTACAAGAGGTTGCTAAAGAGCTTGAAACTAAGAAAAGCAAATACAAGTTTGTGCTTGCAGTAGCCACTTTTTTTGTGCTCATGATTGCAGGAACTGTTTTTCTGTATTTTATTGAGAATCTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCCACGGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTGCTGCCGGTAGGATTTTTGCAGTGTTTTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATCTTGCTGAACTCTATACTGAAGATAGACAAAGATCACTGGCAAAAATGGTTCTCACCCGAAAATTATCACTAAGTGATCTTGAGGCAGCAGATCTTGATGGAGACAAAGTTGTCAGTGCTGCAGAGTTTGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTCAGCAGTGATGGAGAGTTTTAGAAAACTAGACTGTGATCAATCAGGAACTCTGACTGAAGCTGATATCAGAAATTTTGAATTCTGA

Protein sequence

>Msa0094240

MGSDEAQQLLLSESREHSHLNEKSDLLQRRRLRRGGTSETDINLQQEQNGVLQTPLSPQCITDKQEAEFKFRLVFLCLAAYLGTGTLCFYLTSYQIEGIKTNNFLDALYFCVVTMTTVGYGDLVPNSTKAKLLACIYVFTGMALGGLILSKAADYIVEKQEIFLAESMCKAENFGLQEVAKELETKKSKYKFVLAVATFFVLMIAGTVFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTAAGRIFAVFWILSSTICLAQSFAYLAELYTEDRQRSLAKMVLTRKLSLSDLEAADLDGDKVVSAAEFVVYKLKEMGKINQEDISAVMESFRKLDCDQSGTLTEADIRNFEF*