AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193680 MtrunA17_Chr8g0365421 95.833 384 9 1 1 377 1 384 0.0 734
Msa1193680 MtrunA17_Chr7g0228011 71.613 310 80 2 76 377 8 317 4.30e-143 409
Msa1193680 MtrunA17_Chr6g0453201 66.242 314 98 2 72 377 7 320 6.00e-139 398
Msa1193680 MtrunA17_Chr6g0466321 61.146 314 114 2 72 377 15 328 9.60e-131 377
Msa1193680 MtrunA17_Chr6g0465501 60.828 314 115 2 72 377 15 328 1.06e-130 377
Msa1193680 MtrunA17_Chr6g0453191 65.854 287 90 2 72 350 7 293 2.81e-122 355
Msa1193680 MtrunA17_Chr8g0351271 44.762 315 152 7 77 376 5 312 3.30e-82 254
Msa1193680 MtrunA17_Chr8g0351481 45.161 310 150 6 77 373 5 307 7.97e-82 253
Msa1193680 MtrunA17_Chr4g0015051 35.484 341 163 11 76 375 6 330 9.21e-38 138
Msa1193680 MtrunA17_Chr4g0014691 35.588 340 163 13 76 375 6 329 2.61e-37 137
Msa1193680 MtrunA17_Chr4g0014541 35.588 340 163 13 76 375 6 329 4.65e-37 137
Msa1193680 MtrunA17_Chr4g0014951 34.024 338 172 9 76 375 6 330 3.35e-36 134
Msa1193680 MtrunA17_Chr4g0014971 34.320 338 171 10 76 375 6 330 5.40e-36 134
Msa1193680 MtrunA17_Chr4g0014931 33.934 333 179 7 76 375 6 330 1.94e-34 129
Msa1193680 MtrunA17_Chr4g0015091 33.433 335 173 9 76 373 6 327 2.48e-33 126
Msa1193680 MtrunA17_Chr7g0235021 31.307 329 186 8 76 372 6 326 3.20e-29 115
Msa1193680 MtrunA17_Chr2g0316731 28.363 342 196 9 74 373 24 358 2.36e-26 108
Msa1193680 MtrunA17_Chr2g0281301 29.586 338 187 14 74 373 12 336 1.02e-23 100
Msa1193680 MtrunA17_Chr2g0281281 29.464 336 186 14 76 373 1 323 1.14e-21 94.4
Msa1193680 MtrunA17_Chr6g0465551 50.769 65 31 1 72 135 15 79 9.43e-16 71.6
Msa1193680 MtrunA17_Chr4g0013331 28.075 374 200 17 41 375 31 374 3.53e-14 73.2
Msa1193680 MtrunA17_Chr3g0128511 27.273 308 172 10 106 373 40 335 5.83e-12 66.2
Msa1193680 MtrunA17_Chr4g0015001 29.565 230 129 7 175 373 2 229 3.13e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193680 AT1G23740.1 74.571 350 73 3 38 377 43 386 0.0 514
Msa1193680 AT4G13010.1 33.234 337 175 10 76 375 6 329 1.06e-30 120
Msa1193680 AT3G15090.1 30.612 245 154 7 77 310 33 272 8.03e-26 107
Msa1193680 AT4G21580.1 29.762 336 185 13 76 373 1 323 5.09e-21 93.2
Msa1193680 AT4G21580.3 28.788 330 190 11 76 373 1 317 8.21e-20 89.7
Msa1193680 AT3G56460.1 28.391 317 174 11 98 373 32 336 2.17e-18 85.9
Msa1193680 AT5G61510.1 26.902 368 216 13 44 375 56 406 3.89e-14 73.6
Msa1193680 AT1G49670.2 24.398 332 178 8 105 373 318 639 2.33e-13 72.0

Find 94 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTCCACTCTCTAAATA+TGG 0.138626 8_1:+40128340 None:intergenic
GGACCTTTGGGATCTATAAT+TGG 0.222062 8_1:+40128313 None:intergenic
GCCTCAACAATTTGGGTCTT+TGG 0.230906 8_1:-40129356 Msa1193680:CDS
TTAGAAGGGCCTCAACAATT+TGG 0.263057 8_1:-40129364 Msa1193680:CDS
AAGAAGGCAGGGAAAGTTTA+AGG 0.274790 8_1:-40130184 Msa1193680:CDS
ATTCTTGTTCTCAATGGTTC+TGG 0.283840 8_1:-40129193 Msa1193680:CDS
GCTTGGGTGTATGGAGAATA+TGG 0.307432 8_1:-40130315 Msa1193680:CDS
CAGAACTCTTATTTACTCAT+AGG 0.307864 8_1:+40128144 None:intergenic
GAAAAGTCTTGGAGCTGATT+TGG 0.309843 8_1:-40128778 Msa1193680:CDS
GTTCCTGGCTATGATGTTGC+TGG 0.312264 8_1:-40129466 Msa1193680:CDS
AAGGAAAATCTCAGAGAAAA+TGG 0.314959 8_1:+40130486 None:intergenic
TTTGTTGTAAACCGGGTATT+CGG 0.343995 8_1:-40128045 Msa1193680:three_prime_UTR
TGAGACTGCTTATGAAGGTT+TGG 0.356657 8_1:-40129245 Msa1193680:CDS
TAGAAGGGCCTCAACAATTT+GGG 0.371756 8_1:-40129363 Msa1193680:CDS
GGCTACGGATTCTCCTCTTC+CGG 0.375887 8_1:-40130163 Msa1193680:intron
CACTTCAAGCACTAGACATT+TGG 0.377637 8_1:-40128808 Msa1193680:CDS
GTAAATGAGAAAGCATTAGA+AGG 0.380669 8_1:-40129379 Msa1193680:CDS
TCTCCTCAACAGACTGTTCC+TGG 0.380732 8_1:-40129481 Msa1193680:intron
AGCAAAAGAGAATGGACCTT+TGG 0.385814 8_1:+40128300 None:intergenic
CCTTTCCACTCTCTAAATAT+GGG 0.387466 8_1:+40128341 None:intergenic
ATCAAGGCATGCTAGATTCT+TGG 0.396823 8_1:-40130406 Msa1193680:CDS
AAATCTATTCTTGTTCTCAA+TGG 0.403553 8_1:-40129199 Msa1193680:CDS
TTCCTGGCTATGATGTTGCT+GGG 0.421848 8_1:-40129465 Msa1193680:CDS
ATCAATATCATAAAGTTTCA+AGG 0.424316 8_1:+40128071 None:intergenic
GAAATGAAGGCTTGGGTGTA+TGG 0.426528 8_1:-40130324 Msa1193680:CDS
TTCCTTCTGAAATGAAGGCT+TGG 0.430359 8_1:-40130332 Msa1193680:CDS
TCCTTCTGAAATGAAGGCTT+GGG 0.432584 8_1:-40130331 Msa1193680:CDS
GCAAAAGAGAATGGACCTTT+GGG 0.433468 8_1:+40128301 None:intergenic
AGAACTCTTATTTACTCATA+GGG 0.437018 8_1:+40128145 None:intergenic
GGCAGTGTAGTAGCTCTAAC+AGG 0.446032 8_1:-40128430 Msa1193680:CDS
TGAGCAAAGTCCAAGTTTGT+AGG 0.448178 8_1:+40129292 None:intergenic
ACAAGTTCCTTCTGAAATGA+AGG 0.449625 8_1:-40130337 Msa1193680:CDS
ACCTGATGTTAAGGAAGATC+AGG 0.457278 8_1:-40130253 Msa1193680:CDS
CTCTCTTGTCTTCGTCATCA+AGG 0.459453 8_1:-40130422 Msa1193680:CDS
TAAATCACTTGCAACTGATA+AGG 0.460055 8_1:-40130582 Msa1193680:five_prime_UTR
CTCCTCAACAGCTGTGTACT+CGG 0.463426 8_1:+40129333 None:intergenic
ATTGAAACAAACAAAGCTAC+TGG 0.463741 8_1:-40128253 Msa1193680:CDS
AGAGAAAATGGTGAAGTTGA+AGG 0.463923 8_1:+40130498 None:intergenic
GCTGCTCTTAACCCTGTTGA+TGG 0.476989 8_1:-40130210 Msa1193680:CDS
TGAAGGAAGTGAAGGAAGAA+TGG 0.477949 8_1:+40130515 None:intergenic
GCTATTGAGACTGCTTATGA+AGG 0.483022 8_1:-40129250 Msa1193680:CDS
GGCACTAAAACCTACAAACT+TGG 0.483218 8_1:-40129302 Msa1193680:CDS
ACCTGATCTTCCTTAACATC+AGG 0.484347 8_1:+40130252 None:intergenic
CTTGTTCTCAATGGTTCTGG+TGG 0.485138 8_1:-40129190 Msa1193680:CDS
TTTCTTCAGAACAGCTCCAT+TGG 0.486934 8_1:+40128369 None:intergenic
GCAACCTGAGCAAAAGAGAA+TGG 0.487160 8_1:+40128292 None:intergenic
TGTTGCTGTACCTGATGTTA+AGG 0.491842 8_1:-40130262 Msa1193680:CDS
GAAGTAAAGGACTTCAAAGT+AGG 0.496723 8_1:-40129421 Msa1193680:CDS
TTGGAGCTACTGAAAAGTCT+TGG 0.497793 8_1:-40128789 Msa1193680:CDS
TTTATATGATTCATGGGATG+GGG 0.500019 8_1:+40128215 None:intergenic
TATGAAGGTTTGGAGAGGAC+TGG 0.503871 8_1:-40129235 Msa1193680:CDS
GAAGGTTGGCAGTGAAGTAA+AGG 0.510416 8_1:-40129434 Msa1193680:CDS
AGCTGTTGAGGAGAAATTGT+TGG 0.514874 8_1:-40129323 Msa1193680:CDS
AGATTTGTAGTGACTTCCAA+TGG 0.518081 8_1:-40128385 Msa1193680:CDS
GCAGGGAAAGTTTAAGGCTA+CGG 0.519335 8_1:-40130178 Msa1193680:CDS
TGTTGATGGTAAAAGAAGGC+AGG 0.523502 8_1:-40130196 Msa1193680:CDS
TGTTGCTGGGGTTGTAGTGA+AGG 0.526529 8_1:-40129452 Msa1193680:CDS
GCTGGGGTTGTAGTGAAGGT+TGG 0.531522 8_1:-40129448 Msa1193680:CDS
GAATGATCGATCACCGGAAG+AGG 0.537685 8_1:+40130150 None:intergenic
ATCTACTACTGCTTCTTCTG+AGG 0.538407 8_1:-40130373 Msa1193680:CDS
GGAAGAGCTTGCCGAATACC+CGG 0.543775 8_1:+40128034 None:intergenic
GGCCGAGTACACAGCTGTTG+AGG 0.545017 8_1:-40129335 Msa1193680:CDS
GTCACTACAAATCTGAATCC+AGG 0.545336 8_1:+40128394 None:intergenic
GATGTAGTTTATGATGCCAT+TGG 0.546289 8_1:-40128708 Msa1193680:intron
AACATCAGGTACAGCAACAT+TGG 0.547791 8_1:+40130266 None:intergenic
TCAATATCATAAAGTTTCAA+GGG 0.557013 8_1:+40128072 None:intergenic
GGTGAAGTTGAAGGAAGTGA+AGG 0.557286 8_1:+40130507 None:intergenic
ACAGGAGCTGTTACACCACC+TGG 0.561590 8_1:-40128412 Msa1193680:CDS
ACCCCAGCAACATCATAGCC+AGG 0.566870 8_1:+40129463 None:intergenic
GCAATGTGACAGAGCAGTGA+AGG 0.567763 8_1:-40128467 Msa1193680:CDS
AATGGTGAGGTGAGAAGTTG+TGG 0.574018 8_1:+40130533 None:intergenic
ACCCTGTTGATGGTAAAAGA+AGG 0.577796 8_1:-40130200 Msa1193680:CDS
TAAATGAGAAAGCATTAGAA+GGG 0.578500 8_1:-40129378 Msa1193680:CDS
ACCCAAGCCTTCATTTCAGA+AGG 0.580172 8_1:+40130330 None:intergenic
CTAAACCCATATTTAGAGAG+TGG 0.581322 8_1:-40128346 Msa1193680:CDS
AAAGTAGGTGATGAAGTGTA+TGG 0.585688 8_1:-40129406 Msa1193680:CDS
TAAGCAGTCTCAATAGCAAG+AGG 0.589060 8_1:+40129256 None:intergenic
GCCAAAGACCCAAATTGTTG+AGG 0.591301 8_1:+40129355 None:intergenic
GCAGTGAAGGCAATAAAAGA+AGG 0.594518 8_1:-40128454 Msa1193680:CDS
AGAACAAGAATAGATTTACC+AGG 0.605332 8_1:+40129205 None:intergenic
GTTGATGGTAAAAGAAGGCA+GGG 0.608172 8_1:-40130195 Msa1193680:CDS
TCCTGGCTATGATGTTGCTG+GGG 0.610457 8_1:-40129464 Msa1193680:CDS
GGTGAGGTGAGAAGTTGTGG+TGG 0.610962 8_1:+40130536 None:intergenic
AACAAACAAAGCTACTGGAA+AGG 0.637522 8_1:-40128248 Msa1193680:CDS
TGGGTGTATGGAGAATATGG+AGG 0.638579 8_1:-40130312 Msa1193680:CDS
CAAATGTCTAGTGCTTGAAG+TGG 0.641907 8_1:+40128809 None:intergenic
CTGCTTATGAAGGTTTGGAG+AGG 0.648485 8_1:-40129240 Msa1193680:CDS
CCCATATTTAGAGAGTGGAA+AGG 0.653180 8_1:-40128341 Msa1193680:CDS
GTGAAGGCAATAAAAGAAGG+TGG 0.653752 8_1:-40128451 Msa1193680:CDS
TTTGGCTATTGACTACACAA+AGG 0.684942 8_1:-40128760 Msa1193680:CDS
AAGCCAATTATAGATCCCAA+AGG 0.697488 8_1:-40128316 Msa1193680:CDS
GAAGTGAAGGAAGAATGGTG+AGG 0.729256 8_1:+40130520 None:intergenic
AAAACACCAACGTTAAAACG+TGG 0.730769 8_1:-40130631 None:intergenic
ACTACAAATCTGAATCCAGG+TGG 0.755064 8_1:+40128397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTGATTTTAAAATTG+AGG - chr8_1:40128722-40128741 Msa1193680:CDS 10.0%
!!! ATAATTTTTATATGATTCAT+GGG + chr8_1:40130455-40130474 None:intergenic 10.0%
!!! TATAATTTTTATATGATTCA+TGG + chr8_1:40130456-40130475 None:intergenic 10.0%
!! ATGAATCATATAAAAATTAT+AGG - chr8_1:40130455-40130474 Msa1193680:CDS 10.0%
!! TTAAGTAATGAAATCAAATT+TGG - chr8_1:40129146-40129165 Msa1193680:intron 15.0%
!!! TCAGTTATATTTTGATAAAA+TGG + chr8_1:40129600-40129619 None:intergenic 15.0%
!! ATACAAAATTTCAAACAATT+TGG - chr8_1:40130021-40130040 Msa1193680:intron 15.0%
!!! GTGTATTTTATTAATTAGTT+TGG + chr8_1:40130091-40130110 None:intergenic 15.0%
!! TTACATTTGCAAGAAAATTT+AGG - chr8_1:40128801-40128820 Msa1193680:CDS 20.0%
!!! AAGCTTTTTTGAATAGTTTA+CGG + chr8_1:40128978-40128997 None:intergenic 20.0%
!!! CTAGAATACAAAAATTTGTT+TGG + chr8_1:40129120-40129139 None:intergenic 20.0%
!!! CAAACAAATTTTTGTATTCT+AGG - chr8_1:40129118-40129137 Msa1193680:intron 20.0%
!!! TTTTAGACGAAGTATATTTA+TGG - chr8_1:40129712-40129731 Msa1193680:intron 20.0%
!!! GTTTAAATTTTCTAGCAAAA+GGG - chr8_1:40129734-40129753 Msa1193680:intron 20.0%
!!! TAAACTACATCAAATTTTTC+TGG + chr8_1:40129944-40129963 None:intergenic 20.0%
!! TCAATATCATAAAGTTTCAA+GGG + chr8_1:40130592-40130611 None:intergenic 20.0%
!! ATCAATATCATAAAGTTTCA+AGG + chr8_1:40130593-40130612 None:intergenic 20.0%
!!! TTGATTTTTTTGTTGTAAAC+CGG - chr8_1:40130608-40130627 Msa1193680:five_prime_UTR 20.0%
!!! TTTTTTGGTTACTTTTTGGT+TGG + chr8_1:40128207-40128226 None:intergenic 25.0%
!!! CAAGTTTTTTGGTTACTTTT+TGG + chr8_1:40128211-40128230 None:intergenic 25.0%
!!! ACATTTGTTCTTGTTTTTCT+AGG - chr8_1:40128544-40128563 Msa1193680:intron 25.0%
!!! CTAAGATGCTACTTTAAAAT+TGG + chr8_1:40128623-40128642 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG + chr8_1:40128954-40128973 None:intergenic 25.0%
!!! TAAATGAGAAAGCATTAGAA+GGG - chr8_1:40129283-40129302 Msa1193680:CDS 25.0%
! AAATCTATTCTTGTTCTCAA+TGG - chr8_1:40129462-40129481 Msa1193680:CDS 25.0%
! ATATAACTGATACAATGTGT+CGG - chr8_1:40129610-40129629 Msa1193680:intron 25.0%
!!! GGTTTAAATTTTCTAGCAAA+AGG - chr8_1:40129733-40129752 Msa1193680:intron 25.0%
!! GAAGAAAAGAATTTTACCAA+TGG + chr8_1:40129972-40129991 None:intergenic 25.0%
!! TGAAATTTTGTATCGAAGAT+TGG + chr8_1:40130014-40130033 None:intergenic 25.0%
! AAAATTTCAAACAATTTGGC+CGG - chr8_1:40130025-40130044 Msa1193680:intron 25.0%
!! TTTTATATGATTCATGGGAT+GGG + chr8_1:40130450-40130469 None:intergenic 25.0%
!! TTTTTATATGATTCATGGGA+TGG + chr8_1:40130451-40130470 None:intergenic 25.0%
!! AGAACTCTTATTTACTCATA+GGG + chr8_1:40130519-40130538 None:intergenic 25.0%
!!! TGATTTTTTTGTTGTAAACC+GGG - chr8_1:40130609-40130628 Msa1193680:five_prime_UTR 25.0%
TAAATCACTTGCAACTGATA+AGG - chr8_1:40128079-40128098 Msa1193680:three_prime_UTR 30.0%
AAGGAAAATCTCAGAGAAAA+TGG + chr8_1:40128178-40128197 None:intergenic 30.0%
!!! GAGTTTTGAGACAAGTTTTT+TGG + chr8_1:40128222-40128241 None:intergenic 30.0%
GAATTCATTAGCTATGATAG+TGG - chr8_1:40128677-40128696 Msa1193680:intron 30.0%
GAAAGCTTACCGAAATAATT+GGG - chr8_1:40128744-40128763 Msa1193680:CDS 30.0%
!! AAGTTGATTTAGCTCTTGTT+TGG - chr8_1:40128846-40128865 Msa1193680:CDS 30.0%
!! GTAAATGAGAAAGCATTAGA+AGG - chr8_1:40129282-40129301 Msa1193680:CDS 30.0%
AGAACAAGAATAGATTTACC+AGG + chr8_1:40129459-40129478 None:intergenic 30.0%
AAAGTTCTTAGTCAGGTAAA+GGG + chr8_1:40129695-40129714 None:intergenic 30.0%
AAAAGTTCTTAGTCAGGTAA+AGG + chr8_1:40129696-40129715 None:intergenic 30.0%
!! ACTGATTTTGAAAAACTCTC+CGG + chr8_1:40130047-40130066 None:intergenic 30.0%
ATTGAAACAAACAAAGCTAC+TGG - chr8_1:40130408-40130427 Msa1193680:CDS 30.0%
TTTATATGATTCATGGGATG+GGG + chr8_1:40130449-40130468 None:intergenic 30.0%
! CAGAACTCTTATTTACTCAT+AGG + chr8_1:40130520-40130539 None:intergenic 30.0%
AGAGAAAATGGTGAAGTTGA+AGG + chr8_1:40128166-40128185 None:intergenic 35.0%
!!! ACTTTTTGGTTGGAAAGTGA+AGG + chr8_1:40128197-40128216 None:intergenic 35.0%
!! ACAAGTTCCTTCTGAAATGA+AGG - chr8_1:40128324-40128343 Msa1193680:CDS 35.0%
TTTCTAGGCTGTGGAATTTA+TGG - chr8_1:40128559-40128578 Msa1193680:intron 35.0%
!!! TGTGGAATTTATGGTTTTGG+TGG - chr8_1:40128568-40128587 Msa1193680:intron 35.0%
GGAAAGCTTACCGAAATAAT+TGG - chr8_1:40128743-40128762 Msa1193680:CDS 35.0%
CAGATTCCACCCAATTATTT+CGG + chr8_1:40128756-40128775 None:intergenic 35.0%
TGGAATCTGTGTGAAGATAT+TGG - chr8_1:40128767-40128786 Msa1193680:CDS 35.0%
TATGTACTTGTGAGACTGTT+TGG - chr8_1:40128898-40128917 Msa1193680:intron 35.0%
GAAGTAAAGGACTTCAAAGT+AGG - chr8_1:40129240-40129259 Msa1193680:CDS 35.0%
AAAGTAGGTGATGAAGTGTA+TGG - chr8_1:40129255-40129274 Msa1193680:CDS 35.0%
ATTCTTGTTCTCAATGGTTC+TGG - chr8_1:40129468-40129487 Msa1193680:CDS 35.0%
GAGTAAATACCTGAATCACT+AGG + chr8_1:40129506-40129525 None:intergenic 35.0%
TTGCTACAAATCAGCATGAA+AGG + chr8_1:40129540-40129559 None:intergenic 35.0%
TCGTCTAAAAGTTCTTAGTC+AGG + chr8_1:40129702-40129721 None:intergenic 35.0%
GCTGTAAGTCATTAAAGGTA+TGG + chr8_1:40129796-40129815 None:intergenic 35.0%
AGCTAGCTGTAAGTCATTAA+AGG + chr8_1:40129801-40129820 None:intergenic 35.0%
! CAGCTAGCTAAACAAGTTTT+TGG - chr8_1:40129812-40129831 Msa1193680:intron 35.0%
! TTTGGCTATTGACTACACAA+AGG - chr8_1:40129901-40129920 Msa1193680:intron 35.0%
GATGTAGTTTATGATGCCAT+TGG - chr8_1:40129953-40129972 Msa1193680:intron 35.0%
AGTTTATAGACCAAAACGTG+AGG - chr8_1:40130064-40130083 Msa1193680:intron 35.0%
AAGACGCGTTTGTAGATTTA+AGG - chr8_1:40130136-40130155 Msa1193680:intron 35.0%
CCAAGTAAAGGATGTTAGTT+TGG + chr8_1:40130163-40130182 None:intergenic 35.0%
CCAAACTAACATCCTTTACT+TGG - chr8_1:40130160-40130179 Msa1193680:intron 35.0%
AGATTTGTAGTGACTTCCAA+TGG - chr8_1:40130276-40130295 Msa1193680:CDS 35.0%
CTAAACCCATATTTAGAGAG+TGG - chr8_1:40130315-40130334 Msa1193680:CDS 35.0%
CCTTTCCACTCTCTAAATAT+GGG + chr8_1:40130323-40130342 None:intergenic 35.0%
ACCTTTCCACTCTCTAAATA+TGG + chr8_1:40130324-40130343 None:intergenic 35.0%
AAGCCAATTATAGATCCCAA+AGG - chr8_1:40130345-40130364 Msa1193680:CDS 35.0%
AACAAACAAAGCTACTGGAA+AGG - chr8_1:40130413-40130432 Msa1193680:CDS 35.0%
! TTTGTTGTAAACCGGGTATT+CGG - chr8_1:40130616-40130635 Msa1193680:five_prime_UTR 35.0%
TGAAGGAAGTGAAGGAAGAA+TGG + chr8_1:40128149-40128168 None:intergenic 40.0%
ATCAAGGCATGCTAGATTCT+TGG - chr8_1:40128255-40128274 Msa1193680:CDS 40.0%
ATCTACTACTGCTTCTTCTG+AGG - chr8_1:40128288-40128307 Msa1193680:CDS 40.0%
!! TTCCTTCTGAAATGAAGGCT+TGG - chr8_1:40128329-40128348 Msa1193680:CDS 40.0%
!! TCCTTCTGAAATGAAGGCTT+GGG - chr8_1:40128330-40128349 Msa1193680:CDS 40.0%
AACATCAGGTACAGCAACAT+TGG + chr8_1:40128398-40128417 None:intergenic 40.0%
TGTTGCTGTACCTGATGTTA+AGG - chr8_1:40128399-40128418 Msa1193680:CDS 40.0%
ACCTGATGTTAAGGAAGATC+AGG - chr8_1:40128408-40128427 Msa1193680:CDS 40.0%
ACCTGATCTTCCTTAACATC+AGG + chr8_1:40128412-40128431 None:intergenic 40.0%
!! ACCCTGTTGATGGTAAAAGA+AGG - chr8_1:40128461-40128480 Msa1193680:CDS 40.0%
! GCCTTCTTTTACCATCAACA+GGG + chr8_1:40128465-40128484 None:intergenic 40.0%
! TGCCTTCTTTTACCATCAAC+AGG + chr8_1:40128466-40128485 None:intergenic 40.0%
!! TGTTGATGGTAAAAGAAGGC+AGG - chr8_1:40128465-40128484 Msa1193680:CDS 40.0%
!! GTTGATGGTAAAAGAAGGCA+GGG - chr8_1:40128466-40128485 Msa1193680:CDS 40.0%
AAGAAGGCAGGGAAAGTTTA+AGG - chr8_1:40128477-40128496 Msa1193680:intron 40.0%
!!! GTTCTTGTTTTTCTAGGCTG+TGG - chr8_1:40128550-40128569 Msa1193680:intron 40.0%
! GGCTGTGGAATTTATGGTTT+TGG - chr8_1:40128565-40128584 Msa1193680:intron 40.0%
AGCTTACCGAAATAATTGGG+TGG - chr8_1:40128747-40128766 Msa1193680:CDS 40.0%
TTAGAAGGGCCTCAACAATT+TGG - chr8_1:40129297-40129316 Msa1193680:CDS 40.0%
TAGAAGGGCCTCAACAATTT+GGG - chr8_1:40129298-40129317 Msa1193680:CDS 40.0%
AGCTGTTGAGGAGAAATTGT+TGG - chr8_1:40129338-40129357 Msa1193680:CDS 40.0%
GGCACTAAAACCTACAAACT+TGG - chr8_1:40129359-40129378 Msa1193680:CDS 40.0%
TGAGCAAAGTCCAAGTTTGT+AGG + chr8_1:40129372-40129391 None:intergenic 40.0%
TAAGCAGTCTCAATAGCAAG+AGG + chr8_1:40129408-40129427 None:intergenic 40.0%
GCTATTGAGACTGCTTATGA+AGG - chr8_1:40129411-40129430 Msa1193680:CDS 40.0%
TGAGACTGCTTATGAAGGTT+TGG - chr8_1:40129416-40129435 Msa1193680:CDS 40.0%
CATGTAATCGTCACATGTGT+CGG + chr8_1:40129568-40129587 None:intergenic 40.0%
GTTACTGCTCTATGAAGCAT+AGG + chr8_1:40129656-40129675 None:intergenic 40.0%
CAAATGTCTAGTGCTTGAAG+TGG + chr8_1:40129855-40129874 None:intergenic 40.0%
CACTTCAAGCACTAGACATT+TGG - chr8_1:40129853-40129872 Msa1193680:intron 40.0%
TTGGAGCTACTGAAAAGTCT+TGG - chr8_1:40129872-40129891 Msa1193680:intron 40.0%
GAAAAGTCTTGGAGCTGATT+TGG - chr8_1:40129883-40129902 Msa1193680:intron 40.0%
!! TTAGTTTGGTCCTCACGTTT+TGG + chr8_1:40130077-40130096 None:intergenic 40.0%
! TCCTTTACTTGGTGATTTGC+AGG - chr8_1:40130171-40130190 Msa1193680:CDS 40.0%
! CCTTTACTTGGTGATTTGCA+GGG - chr8_1:40130172-40130191 Msa1193680:CDS 40.0%
GCAGTGAAGGCAATAAAAGA+AGG - chr8_1:40130207-40130226 Msa1193680:CDS 40.0%
GTGAAGGCAATAAAAGAAGG+TGG - chr8_1:40130210-40130229 Msa1193680:CDS 40.0%
ACTACAAATCTGAATCCAGG+TGG + chr8_1:40130267-40130286 None:intergenic 40.0%
GTCACTACAAATCTGAATCC+AGG + chr8_1:40130270-40130289 None:intergenic 40.0%
TTTCTTCAGAACAGCTCCAT+TGG + chr8_1:40130295-40130314 None:intergenic 40.0%
CCCATATTTAGAGAGTGGAA+AGG - chr8_1:40130320-40130339 Msa1193680:CDS 40.0%
!! GGACCTTTGGGATCTATAAT+TGG + chr8_1:40130351-40130370 None:intergenic 40.0%
GCAAAAGAGAATGGACCTTT+GGG + chr8_1:40130363-40130382 None:intergenic 40.0%
AGCAAAAGAGAATGGACCTT+TGG + chr8_1:40130364-40130383 None:intergenic 40.0%
AATGGTGAGGTGAGAAGTTG+TGG + chr8_1:40128131-40128150 None:intergenic 45.0%
GAAGTGAAGGAAGAATGGTG+AGG + chr8_1:40128144-40128163 None:intergenic 45.0%
GGTGAAGTTGAAGGAAGTGA+AGG + chr8_1:40128157-40128176 None:intergenic 45.0%
CTCTCTTGTCTTCGTCATCA+AGG - chr8_1:40128239-40128258 Msa1193680:CDS 45.0%
ACCCAAGCCTTCATTTCAGA+AGG + chr8_1:40128334-40128353 None:intergenic 45.0%
GAAATGAAGGCTTGGGTGTA+TGG - chr8_1:40128337-40128356 Msa1193680:CDS 45.0%
GCTTGGGTGTATGGAGAATA+TGG - chr8_1:40128346-40128365 Msa1193680:CDS 45.0%
TGGGTGTATGGAGAATATGG+AGG - chr8_1:40128349-40128368 Msa1193680:CDS 45.0%
! GCAGGGAAAGTTTAAGGCTA+CGG - chr8_1:40128483-40128502 Msa1193680:intron 45.0%
GAGAGTGAATGATCGATCAC+CGG + chr8_1:40128520-40128539 None:intergenic 45.0%
TTCCTGGCTATGATGTTGCT+GGG - chr8_1:40129196-40129215 Msa1193680:CDS 45.0%
GAAGGTTGGCAGTGAAGTAA+AGG - chr8_1:40129227-40129246 Msa1193680:CDS 45.0%
GCCTCAACAATTTGGGTCTT+TGG - chr8_1:40129305-40129324 Msa1193680:CDS 45.0%
GCCAAAGACCCAAATTGTTG+AGG + chr8_1:40129309-40129328 None:intergenic 45.0%
CTGCTTATGAAGGTTTGGAG+AGG - chr8_1:40129421-40129440 Msa1193680:CDS 45.0%
TATGAAGGTTTGGAGAGGAC+TGG - chr8_1:40129426-40129445 Msa1193680:CDS 45.0%
!! CTTGTTCTCAATGGTTCTGG+TGG - chr8_1:40129471-40129490 Msa1193680:CDS 45.0%
AGTTGGAAGCCTAGTGATTC+AGG - chr8_1:40129494-40129513 Msa1193680:intron 45.0%
! CAATGTGTCGGTATCATGTC+CGG - chr8_1:40129622-40129641 Msa1193680:intron 45.0%
CCCTGCAAATCACCAAGTAA+AGG + chr8_1:40130175-40130194 None:intergenic 45.0%
! AGGTCCATTCTCTTTTGCTC+AGG - chr8_1:40130365-40130384 Msa1193680:CDS 45.0%
GCAACCTGAGCAAAAGAGAA+TGG + chr8_1:40130372-40130391 None:intergenic 45.0%
GCTGCTCTTAACCCTGTTGA+TGG - chr8_1:40128451-40128470 Msa1193680:CDS 50.0%
GAATGATCGATCACCGGAAG+AGG + chr8_1:40128514-40128533 None:intergenic 50.0%
TCTCCTCAACAGACTGTTCC+TGG - chr8_1:40129180-40129199 Msa1193680:intron 50.0%
TAGCCAGGAACAGTCTGTTG+AGG + chr8_1:40129186-40129205 None:intergenic 50.0%
GTTCCTGGCTATGATGTTGC+TGG - chr8_1:40129195-40129214 Msa1193680:CDS 50.0%
TCCTGGCTATGATGTTGCTG+GGG - chr8_1:40129197-40129216 Msa1193680:CDS 50.0%
TGTTGCTGGGGTTGTAGTGA+AGG - chr8_1:40129209-40129228 Msa1193680:CDS 50.0%
CTCCTCAACAGCTGTGTACT+CGG + chr8_1:40129331-40129350 None:intergenic 50.0%
! GAGAGGACTGGATTTTCTCC+TGG - chr8_1:40129438-40129457 Msa1193680:CDS 50.0%
!! CTCAATGGTTCTGGTGGAGT+TGG - chr8_1:40129477-40129496 Msa1193680:intron 50.0%
GCAATGTGACAGAGCAGTGA+AGG - chr8_1:40130194-40130213 Msa1193680:CDS 50.0%
!! GGCAGTGTAGTAGCTCTAAC+AGG - chr8_1:40130231-40130250 Msa1193680:CDS 50.0%
GGTGAGGTGAGAAGTTGTGG+TGG + chr8_1:40128128-40128147 None:intergenic 55.0%
GGCTACGGATTCTCCTCTTC+CGG - chr8_1:40128498-40128517 Msa1193680:intron 55.0%
ACCCCAGCAACATCATAGCC+AGG + chr8_1:40129201-40129220 None:intergenic 55.0%
GCTGGGGTTGTAGTGAAGGT+TGG - chr8_1:40129213-40129232 Msa1193680:CDS 55.0%
TGAAGCATAGGCGCAGACAC+CGG + chr8_1:40129644-40129663 None:intergenic 55.0%
ACAGGAGCTGTTACACCACC+TGG - chr8_1:40130249-40130268 Msa1193680:CDS 55.0%
GGCCGAGTACACAGCTGTTG+AGG - chr8_1:40129326-40129345 Msa1193680:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 40128044 40130639 40128044 ID=Msa1193680;Name=Msa1193680
chr8_1 mRNA 40128044 40130639 40128044 ID=Msa1193680-mRNA-1;Parent=Msa1193680;Name=Msa1193680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=71|0.66|0.75|1|1|1|4|181|377
chr8_1 exon 40128044 40128490 40128044 ID=Msa1193680-mRNA-1:exon:13102;Parent=Msa1193680-mRNA-1
chr8_1 exon 40128709 40128868 40128709 ID=Msa1193680-mRNA-1:exon:13101;Parent=Msa1193680-mRNA-1
chr8_1 exon 40129189 40129491 40129189 ID=Msa1193680-mRNA-1:exon:13100;Parent=Msa1193680-mRNA-1
chr8_1 exon 40130164 40130639 40130164 ID=Msa1193680-mRNA-1:exon:13099;Parent=Msa1193680-mRNA-1
chr8_1 five_prime_UTR 40130569 40130639 40130569 ID=Msa1193680-mRNA-1:five_prime_utr;Parent=Msa1193680-mRNA-1
chr8_1 CDS 40130164 40130568 40130164 ID=Msa1193680-mRNA-1:cds;Parent=Msa1193680-mRNA-1
chr8_1 CDS 40129189 40129491 40129189 ID=Msa1193680-mRNA-1:cds;Parent=Msa1193680-mRNA-1
chr8_1 CDS 40128709 40128868 40128709 ID=Msa1193680-mRNA-1:cds;Parent=Msa1193680-mRNA-1
chr8_1 CDS 40128225 40128490 40128225 ID=Msa1193680-mRNA-1:cds;Parent=Msa1193680-mRNA-1
chr8_1 three_prime_UTR 40128044 40128224 40128044 ID=Msa1193680-mRNA-1:three_prime_utr;Parent=Msa1193680-mRNA-1
Gene Sequence

>Msa1193680

ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTTCCTTCACTTCCTTCAACTTCACCATTTTCTCTGAGATTTTCCTTCACTTTCCAACCAAAAAGTAACCAAAAAACTTGTCTCAAAACTCTCTTGTCTTCGTCATCAAGGCATGCTAGATTCTTGGTGAAGTCTCAATCTACTACTGCTTCTTCTGAGGCTGTGAAAGTGACACAAGTTCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTTTTGAAATTTGACTCCAATGTTGCTGTACCTGATGTTAAGGAAGATCAGGTTCTTGTTAAAGTTGCTGCTGCTGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACGGATTCTCCTCTTCCGACTGTTCCTGGCTATGATGTTGCTGGGGTTGTAGTGAAGGTTGGCAGTGAAGTAAAGGACTTCAAAGTAGGTGATGAAGTGTATGGTGATGTAAATGAGAAAGCATTAGAAGGGCCTCAACAATTTGGGTCTTTGGCCGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTACAAACTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCTATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGACTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGACATTTGGAGCTACTGAAAAGTCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGAGCAGTGAAGGCAATAAAAGAAGGTGGCAGTGTAGTAGCTCTAACAGGAGCTGTTACACCACCTGGATTCAGATTTGTAGTGACTTCCAATGGAGCTGTTCTGAAGAAACTAAACCCATATTTAGAGAGTGGAAAGGTGAAGCCAATTATAGATCCCAAAGGTCCATTCTCTTTTGCTCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCCATGA

Protein sequence

>Msa1193680

MSLSTTTSHLTILPSLPSTSPFSLRFSFTFQPKSNQKTCLKTLLSSSSRHARFLVKSQSTTASSEAVKVTQVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVKVAAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVNEKALEGPQQFGSLAEYTAVEEKLLALKPTNLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGLAKQVFGASRVAATSSTRHLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFSFAQVAEAFSYIETNKATGKVVIFPIP*