AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0780880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0780880 MtrunA17_Chr5g0441411 97.368 38 1 0 28 65 83 120 1.03e-20 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 20 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGATGTTGCTCGAAAAT+TGG 0.248254 5_2:-63041986 Msa0780880:CDS
GCTTGTAACTCTGCAATCTT+AGG 0.301055 5_2:+63041954 None:intergenic
TCCAATACAATCCCTAGTCT+TGG 0.443977 5_2:+63041828 None:intergenic
TGTCTCAATATCAATTTACA+TGG 0.472075 5_2:+63041694 None:intergenic
TCCAAGACTAGGGATTGTAT+TGG 0.504722 5_2:-63041829 Msa0780880:three_prime_UTR
TTTGCGAACGTGAATCTTGA+CGG 0.510535 5_2:+63046370 None:intergenic
TTGAGTAGTAAAGTTGGTGT+GGG 0.522255 5_2:-63041854 Msa0780880:three_prime_UTR
TATAATGTATAATGCAAATG+TGG 0.522293 5_2:-63041801 Msa0780880:three_prime_UTR
TTGCGAACGTGAATCTTGAC+GGG 0.530131 5_2:+63046371 None:intergenic
TGGTGTGGTTTATTCTGCAA+AGG 0.540097 5_2:-63046422 Msa0780880:CDS
TTTGAGTAGTAAAGTTGGTG+TGG 0.541565 5_2:-63041855 Msa0780880:three_prime_UTR
GTGGTTTATTCTGCAAAGGT+TGG 0.553043 5_2:-63046418 Msa0780880:CDS
TGGTGTGGGAATCCAAGACT+AGG 0.561188 5_2:-63041840 Msa0780880:three_prime_UTR
GTCAAGATTCACGTTCGCAA+AGG 0.565582 5_2:-63046368 Msa0780880:intron
GTGTATTTGCAGCGGTGGTG+TGG 0.582985 5_2:-63046437 Msa0780880:intron
GTCTCAATATCAATTTACAT+GGG 0.588731 5_2:+63041695 None:intergenic
ACAGGTTGGTACAGAAGAAG+CGG 0.620709 5_2:-63042417 Msa0780880:intron
GGTGTGGGAATCCAAGACTA+GGG 0.626844 5_2:-63041839 Msa0780880:three_prime_UTR
ATAATGTATAATGCAAATGT+GGG 0.638049 5_2:-63041800 Msa0780880:three_prime_UTR
GACATTGCAACTAACTGTTG+AGG 0.652421 5_2:+63041738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATATGATAAAATATT+AGG + chr5_2:63044289-63044308 None:intergenic 10.0%
!!! ATTTTTAATAATTAAGAACA+AGG + chr5_2:63044911-63044930 None:intergenic 10.0%
!! TTGTTCTTAATTATTAAAAA+TGG - chr5_2:63044910-63044929 Msa0780880:intron 10.0%
!!! TTTTATTCATTTATATTTTC+TGG + chr5_2:63046002-63046021 None:intergenic 10.0%
!! ATATAAATGAATAAAATTGA+TGG - chr5_2:63046006-63046025 Msa0780880:intron 10.0%
!!! TAAAACAATAAAAGAATTTT+TGG + chr5_2:63046083-63046102 None:intergenic 10.0%
!!! TTTTATTGTTTTATTTCTTT+AGG - chr5_2:63046090-63046109 Msa0780880:intron 10.0%
!!! AAAAACAAAGTTTTAGAAAT+GGG + chr5_2:63042046-63042065 None:intergenic 15.0%
!!! TAAAAACAAAGTTTTAGAAA+TGG + chr5_2:63042047-63042066 None:intergenic 15.0%
!!! TTTTCTCATACTATTAATAT+TGG - chr5_2:63043080-63043099 Msa0780880:intron 15.0%
!!! TTAAAGCAAAATTCAAATTT+TGG - chr5_2:63043667-63043686 Msa0780880:intron 15.0%
!! ATAGCAACATTATAAATTAT+AGG - chr5_2:63045003-63045022 Msa0780880:intron 15.0%
!!! GTTTAAATGATTATCATTTT+GGG - chr5_2:63045766-63045785 Msa0780880:intron 15.0%
!!! AAATGAACATTTTGTTTTTT+AGG - chr5_2:63045873-63045892 Msa0780880:intron 15.0%
!!! AATGAACATTTTGTTTTTTA+GGG - chr5_2:63045874-63045893 Msa0780880:intron 15.0%
!!! GCAAAATAAATTTTATGAGA+TGG - chr5_2:63042193-63042212 Msa0780880:intron 20.0%
!!! AGTTGAAGGAATTTATTTTA+TGG - chr5_2:63042397-63042416 Msa0780880:CDS 20.0%
!! AGTACTTATAGTATAATAGA+TGG - chr5_2:63042537-63042556 Msa0780880:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG - chr5_2:63042691-63042710 Msa0780880:intron 20.0%
!! CAATGATGATATAACTTTAT+GGG - chr5_2:63043183-63043202 Msa0780880:intron 20.0%
!! AATGATGATATAACTTTATG+GGG - chr5_2:63043184-63043203 Msa0780880:intron 20.0%
!! TTATAATTATTTGTTCGTTG+TGG - chr5_2:63043222-63043241 Msa0780880:intron 20.0%
!! TATAATTATTTGTTCGTTGT+GGG - chr5_2:63043223-63043242 Msa0780880:intron 20.0%
!!! AGATTCAAAAACTTTTACTT+TGG + chr5_2:63043258-63043277 None:intergenic 20.0%
!! ACTTAACATGATTCTATATA+TGG - chr5_2:63043705-63043724 Msa0780880:intron 20.0%
!! CTTAACATGATTCTATATAT+GGG - chr5_2:63043706-63043725 Msa0780880:intron 20.0%
!! AAATATAACAGTTGTCAATT+AGG + chr5_2:63043746-63043765 None:intergenic 20.0%
!! AGTAATATTCATTATTCTTG+CGG + chr5_2:63044062-63044081 None:intergenic 20.0%
!! TAAGCATGAAACAAATTATT+GGG + chr5_2:63044227-63044246 None:intergenic 20.0%
!! ATAAGCATGAAACAAATTAT+TGG + chr5_2:63044228-63044247 None:intergenic 20.0%
!! GGTAAAACTTATATCAAAAT+AGG + chr5_2:63044268-63044287 None:intergenic 20.0%
!!! ACTTGTTACAAAATAAACAT+AGG + chr5_2:63044326-63044345 None:intergenic 20.0%
!! ATAATTAAGAACAAGGATAA+TGG + chr5_2:63044904-63044923 None:intergenic 20.0%
!! AAATCAAAGTAATTCAAACT+GGG + chr5_2:63045151-63045170 None:intergenic 20.0%
!! AAAATCAAAGTAATTCAAAC+TGG + chr5_2:63045152-63045171 None:intergenic 20.0%
!! TTGAAAGTTTCATTTAATGA+TGG - chr5_2:63045352-63045371 Msa0780880:intron 20.0%
!!! CGTTTAAATGATTATCATTT+TGG - chr5_2:63045765-63045784 Msa0780880:intron 20.0%
!!! TTCTTTCATAGAAAGTATTA+TGG - chr5_2:63045791-63045810 Msa0780880:intron 20.0%
!! ATTTATAGAAAGTAGTTTCT+TGG - chr5_2:63045828-63045847 Msa0780880:intron 20.0%
!!! ATGAACATTTTGTTTTTTAG+GGG - chr5_2:63045875-63045894 Msa0780880:intron 20.0%
!!! TTATATTTTCTGGAATTTCA+TGG + chr5_2:63045992-63046011 None:intergenic 20.0%
!! TATAATGTATAATGCAAATG+TGG - chr5_2:63046314-63046333 Msa0780880:intron 20.0%
!! ATAATGTATAATGCAAATGT+GGG - chr5_2:63046315-63046334 Msa0780880:intron 20.0%
! AATCGAAACTTTAAACAACA+GGG + chr5_2:63041970-63041989 None:intergenic 25.0%
! AAATCGAAACTTTAAACAAC+AGG + chr5_2:63041971-63041990 None:intergenic 25.0%
!!! AGACGAGTTTTATATGAATT+AGG - chr5_2:63042101-63042120 Msa0780880:intron 25.0%
!!! AGGTTTATTTGATGATGATA+AGG - chr5_2:63042121-63042140 Msa0780880:intron 25.0%
!! TTTTATGAGATGGTGTTTAT+TGG - chr5_2:63042203-63042222 Msa0780880:intron 25.0%
! TTTATGAGATGGTGTTTATT+GGG - chr5_2:63042204-63042223 Msa0780880:intron 25.0%
! AAAGAAAAGTTATGAACAGA+AGG + chr5_2:63042274-63042293 None:intergenic 25.0%
! TAAATTCCTTCAACTTAAGT+GGG + chr5_2:63042392-63042411 None:intergenic 25.0%
! ATAAATTCCTTCAACTTAAG+TGG + chr5_2:63042393-63042412 None:intergenic 25.0%
! ACTTATAGTATAATAGATGG+TGG - chr5_2:63042540-63042559 Msa0780880:intron 25.0%
! AAACTAGACTTAAATGGTTT+CGG - chr5_2:63042563-63042582 Msa0780880:intron 25.0%
!! TAATCTCTTGTAGTTTTTCT+AGG + chr5_2:63042673-63042692 None:intergenic 25.0%
! ACTACAAGAGATTAATGATT+TGG - chr5_2:63042679-63042698 Msa0780880:intron 25.0%
! TGGTACTTAATAGAACATTA+TGG - chr5_2:63042711-63042730 Msa0780880:intron 25.0%
!! TAGTGTTATTAGTTTCAACT+AGG - chr5_2:63042796-63042815 Msa0780880:intron 25.0%
!! TGAAGTAGTATTATTGATTG+CGG - chr5_2:63042858-63042877 Msa0780880:intron 25.0%
! GCAATGATGATATAACTTTA+TGG - chr5_2:63043182-63043201 Msa0780880:intron 25.0%
! ATAATTATTTGTTCGTTGTG+GGG - chr5_2:63043224-63043243 Msa0780880:intron 25.0%
! GTTAAAAAACAGAAAGAAAG+AGG + chr5_2:63043366-63043385 None:intergenic 25.0%
! AAAACAAAGTGACAATTCTA+TGG + chr5_2:63043454-63043473 None:intergenic 25.0%
! CATCATATTACATATGCAAA+CGG + chr5_2:63043527-63043546 None:intergenic 25.0%
!!! ATAGTTTTAGACTATGTTGT+GGG + chr5_2:63043647-63043666 None:intergenic 25.0%
!!! AATAGTTTTAGACTATGTTG+TGG + chr5_2:63043648-63043667 None:intergenic 25.0%
! ATTGACAACTGTTATATTTC+AGG - chr5_2:63043747-63043766 Msa0780880:intron 25.0%
! TATTCTTGAGCTATGTAATT+GGG + chr5_2:63044099-63044118 None:intergenic 25.0%
! TTATTCTTGAGCTATGTAAT+TGG + chr5_2:63044100-63044119 None:intergenic 25.0%
!! GATGTATTTGTTGAACAATA+AGG + chr5_2:63044683-63044702 None:intergenic 25.0%
!! ATTTTGTTACAACAATCAAC+TGG - chr5_2:63044734-63044753 Msa0780880:intron 25.0%
!! AAAATGAATCTGTTAGTTTG+GGG + chr5_2:63044798-63044817 None:intergenic 25.0%
!! CAAAATGAATCTGTTAGTTT+GGG + chr5_2:63044799-63044818 None:intergenic 25.0%
! AACATAGCACATGTTTATAT+TGG - chr5_2:63044933-63044952 Msa0780880:intron 25.0%
! TGTAAGGAAAAAGTAAACAA+GGG + chr5_2:63044972-63044991 None:intergenic 25.0%
! ATGTAAGGAAAAAGTAAACA+AGG + chr5_2:63044973-63044992 None:intergenic 25.0%
!! TAATCAGCTTCAAACTTTTA+AGG + chr5_2:63045035-63045054 None:intergenic 25.0%
!!! GTTGATGATTTTGTAAAGAT+AGG - chr5_2:63045383-63045402 Msa0780880:intron 25.0%
! ATTGGTTATAATGTTTCAAC+AGG - chr5_2:63045680-63045699 Msa0780880:intron 25.0%
!! AAAGAAGTCTTTCATTGATT+AGG - chr5_2:63045906-63045925 Msa0780880:intron 25.0%
! GTCTCAATATCAATTTACAT+GGG + chr5_2:63046423-63046442 None:intergenic 25.0%
! TGTCTCAATATCAATTTACA+TGG + chr5_2:63046424-63046443 None:intergenic 25.0%
! TCTAGGGTTTAGAAAGTTAT+AGG - chr5_2:63041896-63041915 Msa0780880:three_prime_UTR 30.0%
! ATACCATGTTGTGAATTTTG+TGG - chr5_2:63041996-63042015 Msa0780880:CDS 30.0%
AAACCACAAAATTCACAACA+TGG + chr5_2:63042002-63042021 None:intergenic 30.0%
!! ATTTGATGATGATAAGGATG+TGG - chr5_2:63042127-63042146 Msa0780880:intron 30.0%
ACGTAGAAATAAAAGGAGTA+GGG - chr5_2:63042331-63042350 Msa0780880:intron 30.0%
TTATGGTATAGCTATAAGAC+TGG - chr5_2:63042414-63042433 Msa0780880:CDS 30.0%
AGACAGGATAAGATTAGAAA+TGG - chr5_2:63042490-63042509 Msa0780880:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG - chr5_2:63042599-63042618 Msa0780880:intron 30.0%
GGACTTATAGAATTACAACA+TGG + chr5_2:63042892-63042911 None:intergenic 30.0%
CAGCATATAGAAATTTGTGA+AGG + chr5_2:63042953-63042972 None:intergenic 30.0%
! TGTTTTCAAAAAATCCGCTA+TGG - chr5_2:63042971-63042990 Msa0780880:intron 30.0%
! ATTGGTTTAGTCATTAGTGT+CGG - chr5_2:63043098-63043117 Msa0780880:intron 30.0%
CATTGCTTCATAGTTTATAG+AGG - chr5_2:63043148-63043167 Msa0780880:intron 30.0%
ATATAACTTTATGGGGAACT+TGG - chr5_2:63043191-63043210 Msa0780880:intron 30.0%
TAATTATTTGTTCGTTGTGG+GGG - chr5_2:63043225-63043244 Msa0780880:intron 30.0%
TACTGAGTTTGGATTATGTT+GGG - chr5_2:63043402-63043421 Msa0780880:intron 30.0%
GACAAATTGTAGCATTCATT+AGG + chr5_2:63043432-63043451 None:intergenic 30.0%
! TTTGCTTTGAGTTTCATTTG+AGG - chr5_2:63043471-63043490 Msa0780880:intron 30.0%
TATGCAAACGGAAAAAACAT+GGG + chr5_2:63043515-63043534 None:intergenic 30.0%
ATATGCAAACGGAAAAAACA+TGG + chr5_2:63043516-63043535 None:intergenic 30.0%
CGTTTGCATATGTAATATGA+TGG - chr5_2:63043525-63043544 Msa0780880:intron 30.0%
! GGAAGACATTAGCATTTTAT+AGG - chr5_2:63043546-63043565 Msa0780880:intron 30.0%
!!! TAGTTTTAGACTATGTTGTG+GGG + chr5_2:63043646-63043665 None:intergenic 30.0%
TATTGATGTCTGTGTAAACT+AGG - chr5_2:63043863-63043882 Msa0780880:intron 30.0%
ATTGATGTCTGTGTAAACTA+GGG - chr5_2:63043864-63043883 Msa0780880:intron 30.0%
TATTCATTATTCTTGCGGTT+TGG + chr5_2:63044057-63044076 None:intergenic 30.0%
AAAGAAAGCAAATTCATCAC+TGG + chr5_2:63044200-63044219 None:intergenic 30.0%
!! GATAAGGATTTTGAGAATCA+AGG - chr5_2:63044630-63044649 Msa0780880:intron 30.0%
AATCAAGGAATCAACAAACA+TGG - chr5_2:63044645-63044664 Msa0780880:intron 30.0%
CCAAAATGAATCTGTTAGTT+TGG + chr5_2:63044800-63044819 None:intergenic 30.0%
! CCAAACTAACAGATTCATTT+TGG - chr5_2:63044797-63044816 Msa0780880:intron 30.0%
GTATGCATGTAAAAATAAGC+AGG + chr5_2:63044867-63044886 None:intergenic 30.0%
GCTATAGAGATTGAAATGTA+AGG + chr5_2:63044988-63045007 None:intergenic 30.0%
AAAGTAATTCAAACTGGGTT+TGG + chr5_2:63045146-63045165 None:intergenic 30.0%
ATAAAAATTCTTGTCCCATC+TGG - chr5_2:63045240-63045259 Msa0780880:intron 30.0%
!!! ATTTTTTTCACATGCCAGAT+GGG + chr5_2:63045257-63045276 None:intergenic 30.0%
TCTCTTTATCATGTTTGTGA+AGG - chr5_2:63045482-63045501 Msa0780880:intron 30.0%
ATTTATGCGTGTGACAATTT+AGG + chr5_2:63045518-63045537 None:intergenic 30.0%
AAATTGTCACACGCATAAAT+AGG - chr5_2:63045518-63045537 Msa0780880:intron 30.0%
AATTGTCACACGCATAAATA+GGG - chr5_2:63045519-63045538 Msa0780880:intron 30.0%
GTTATAATGTTTCAACAGGT+TGG - chr5_2:63045684-63045703 Msa0780880:intron 30.0%
TTTAGATGTTGCTCGAAAAT+TGG - chr5_2:63046129-63046148 Msa0780880:intron 30.0%
!! GACATTTTGAGTAGTAAAGT+TGG - chr5_2:63046255-63046274 Msa0780880:intron 30.0%
TTGAAATTCAGCTTCATCCA+TGG + chr5_2:63041803-63041822 None:intergenic 35.0%
!!! TGTGGTATCAGTTTTGAAGT+AGG - chr5_2:63042145-63042164 Msa0780880:intron 35.0%
!!! GTGGTATCAGTTTTGAAGTA+GGG - chr5_2:63042146-63042165 Msa0780880:intron 35.0%
!!! TGGTATCAGTTTTGAAGTAG+GGG - chr5_2:63042147-63042166 Msa0780880:intron 35.0%
!! TTATTTCTACGTCGTCTTGT+AGG + chr5_2:63042323-63042342 None:intergenic 35.0%
CAAGACGACGTAGAAATAAA+AGG - chr5_2:63042324-63042343 Msa0780880:intron 35.0%
GACGTAGAAATAAAAGGAGT+AGG - chr5_2:63042330-63042349 Msa0780880:intron 35.0%
!! AAAGTACCCACTTAAGTTGA+AGG - chr5_2:63042383-63042402 Msa0780880:CDS 35.0%
CAACATTAGAAAGAGAGTCA+GGG - chr5_2:63042513-63042532 Msa0780880:intron 35.0%
TGGTGGAAACTAGACTTAAA+TGG - chr5_2:63042557-63042576 Msa0780880:intron 35.0%
! AGTAAGGAGAGTATATCAGA+TGG - chr5_2:63042615-63042634 Msa0780880:intron 35.0%
ATGGCGTTATTTGATTCATG+CGG - chr5_2:63042730-63042749 Msa0780880:intron 35.0%
! GTAGTATTATTGATTGCGGA+TGG - chr5_2:63042862-63042881 Msa0780880:intron 35.0%
! TTGTCAAGTATTGTCCATAG+CGG + chr5_2:63042988-63043007 None:intergenic 35.0%
TATGACATGATGTTCTGTGT+GGG - chr5_2:63043279-63043298 Msa0780880:intron 35.0%
! GAAAGAAAGAGGATTTTCCA+GGG + chr5_2:63043355-63043374 None:intergenic 35.0%
! AGAAAGAAAGAGGATTTTCC+AGG + chr5_2:63043356-63043375 None:intergenic 35.0%
ATCCAAACTCAGTACAAAGA+AGG + chr5_2:63043396-63043415 None:intergenic 35.0%
GTACTGAGTTTGGATTATGT+TGG - chr5_2:63043401-63043420 Msa0780880:intron 35.0%
GTTTCATTTGAGGAGAAGAT+TGG - chr5_2:63043481-63043500 Msa0780880:intron 35.0%
CTATATATGGGATTACGCTT+TGG - chr5_2:63043718-63043737 Msa0780880:intron 35.0%
TTGATGTCTGTGTAAACTAG+GGG - chr5_2:63043865-63043884 Msa0780880:intron 35.0%
!! TGGTTTGCGGTTTTTCTATT+GGG + chr5_2:63043909-63043928 None:intergenic 35.0%
!!! TTGGTTTGCGGTTTTTCTAT+TGG + chr5_2:63043910-63043929 None:intergenic 35.0%
!! ATTATTCTTGCGGTTTGGTT+AGG + chr5_2:63044052-63044071 None:intergenic 35.0%
! TTTTTAATCGTTGCACCATC+AGG - chr5_2:63044136-63044155 Msa0780880:intron 35.0%
GGAATTATAATCGAACCTGA+TGG + chr5_2:63044154-63044173 None:intergenic 35.0%
! ATGAGTTGAAAGAGATGGAA+AGG + chr5_2:63044175-63044194 None:intergenic 35.0%
! TGGAAATGAGTTGAAAGAGA+TGG + chr5_2:63044180-63044199 None:intergenic 35.0%
! AGATAAAAAAGCATGCGGTT+TGG + chr5_2:63044477-63044496 None:intergenic 35.0%
GCATTACATGTTTACACTAG+AGG + chr5_2:63044553-63044572 None:intergenic 35.0%
TATCACTGCAGCTAAATGAA+TGG - chr5_2:63044586-63044605 Msa0780880:intron 35.0%
TAAATGAATGGCATGATGCA+TGG - chr5_2:63044598-63044617 Msa0780880:intron 35.0%
TGCATGGAATGAAAAGGATA+AGG - chr5_2:63044614-63044633 Msa0780880:intron 35.0%
!!! CATTTTTTTCACATGCCAGA+TGG + chr5_2:63045258-63045277 None:intergenic 35.0%
AGGGATAAAAGATAAGTGAG+AGG - chr5_2:63045538-63045557 Msa0780880:intron 35.0%
GGGATAAAAGATAAGTGAGA+GGG - chr5_2:63045539-63045558 Msa0780880:intron 35.0%
GGATAAAAGATAAGTGAGAG+GGG - chr5_2:63045540-63045559 Msa0780880:intron 35.0%
!! TTTGAGTAGTAAAGTTGGTG+TGG - chr5_2:63046260-63046279 Msa0780880:intron 35.0%
!! TTGAGTAGTAAAGTTGGTGT+GGG - chr5_2:63046261-63046280 Msa0780880:intron 35.0%
! AATCATTACATGTTTTCCCC+AGG - chr5_2:63046444-63046463 Msa0780880:intron 35.0%
TGGTGTGGTTTATTCTGCAA+AGG - chr5_2:63041693-63041712 Msa0780880:three_prime_UTR 40.0%
GTGGTTTATTCTGCAAAGGT+TGG - chr5_2:63041697-63041716 Msa0780880:three_prime_UTR 40.0%
TTTGCGAACGTGAATCTTGA+CGG + chr5_2:63041748-63041767 None:intergenic 40.0%
TTCCCACTGTTTGTGTTTCT+AGG - chr5_2:63041879-63041898 Msa0780880:three_prime_UTR 40.0%
! TCCCACTGTTTGTGTTTCTA+GGG - chr5_2:63041880-63041899 Msa0780880:three_prime_UTR 40.0%
ACCCTAGAAACACAAACAGT+GGG + chr5_2:63041884-63041903 None:intergenic 40.0%
AACCCTAGAAACACAAACAG+TGG + chr5_2:63041885-63041904 None:intergenic 40.0%
AGAAGGATTCGAAACTGCAT+GGG + chr5_2:63042257-63042276 None:intergenic 40.0%
CGTATCAGATAAGACACATG+CGG + chr5_2:63042363-63042382 None:intergenic 40.0%
GCAACATTAGAAAGAGAGTC+AGG - chr5_2:63042512-63042531 Msa0780880:intron 40.0%
! AAGGAGAGTATATCAGATGG+AGG - chr5_2:63042618-63042637 Msa0780880:intron 40.0%
! AGGAGAGTATATCAGATGGA+GGG - chr5_2:63042619-63042638 Msa0780880:intron 40.0%
AGTCCAATCACTAGATCTAG+AGG - chr5_2:63042643-63042662 Msa0780880:intron 40.0%
CTTCCTCTAGATCTAGTGAT+TGG + chr5_2:63042649-63042668 None:intergenic 40.0%
! TTTTATGGCAGCTCAAATGG+CGG + chr5_2:63042913-63042932 None:intergenic 40.0%
ACAACACTAGATTGAAGTGC+CGG - chr5_2:63043004-63043023 Msa0780880:intron 40.0%
TGTTAGTGTCATGTCGGTAT+TGG + chr5_2:63043034-63043053 None:intergenic 40.0%
CACATGTGTTAGTGTCATGT+CGG + chr5_2:63043040-63043059 None:intergenic 40.0%
GTATGACATGATGTTCTGTG+TGG - chr5_2:63043278-63043297 Msa0780880:intron 40.0%
ATGACATGATGTTCTGTGTG+GGG - chr5_2:63043280-63043299 Msa0780880:intron 40.0%
CTCCTTCTTTGTACTGAGTT+TGG - chr5_2:63043391-63043410 Msa0780880:intron 40.0%
TACCTTAAAAGCCTGCACAA+TGG - chr5_2:63043576-63043595 Msa0780880:intron 40.0%
TCATCCAGACAATTAACACC+TGG - chr5_2:63043787-63043806 Msa0780880:intron 40.0%
AGATCCAGGTGTTAATTGTC+TGG + chr5_2:63043794-63043813 None:intergenic 40.0%
AGACAATTAACACCTGGATC+TGG - chr5_2:63043793-63043812 Msa0780880:intron 40.0%
! TTGCGGTTTTTCTATTGGGT+TGG + chr5_2:63043905-63043924 None:intergenic 40.0%
!! GTTTGGATTGGTTTGGTTTG+CGG + chr5_2:63043922-63043941 None:intergenic 40.0%
CAAACCAAACCAAACCAATG+CGG + chr5_2:63044418-63044437 None:intergenic 40.0%
!! TGGTTTGGTTTGGTTTGGTT+TGG - chr5_2:63044421-63044440 Msa0780880:intron 40.0%
!! AAAAAGCATGCGGTTTGGTT+TGG + chr5_2:63044472-63044491 None:intergenic 40.0%
GCATGATGCATGGAATGAAA+AGG - chr5_2:63044608-63044627 Msa0780880:intron 40.0%
TTGGAACAAGCTAAAGTCAG+AGG - chr5_2:63044816-63044835 Msa0780880:intron 40.0%
AAAGTCAGAGGCTGCTAAAA+AGG - chr5_2:63044828-63044847 Msa0780880:intron 40.0%
! ATAGGCGAGATTGTTGTTGT+AGG - chr5_2:63045401-63045420 Msa0780880:intron 40.0%
! CTAGGGTGTTATAACTGTGA+TGG - chr5_2:63045578-63045597 Msa0780880:intron 40.0%
TAGAATGACACTACGCTCAT+TGG - chr5_2:63045662-63045681 Msa0780880:intron 40.0%
! AGAAGCGGAAAGATTTTGCA+AGG - chr5_2:63045713-63045732 Msa0780880:intron 40.0%
GCTTGTAACTCTGCAATCTT+AGG + chr5_2:63046164-63046183 None:intergenic 40.0%
TCCAAGACTAGGGATTGTAT+TGG - chr5_2:63046286-63046305 Msa0780880:intron 40.0%
TCCAATACAATCCCTAGTCT+TGG + chr5_2:63046290-63046309 None:intergenic 40.0%
GACATTGCAACTAACTGTTG+AGG + chr5_2:63046380-63046399 None:intergenic 40.0%
GTGTCTGTGTGTATTTGCAG+CGG - chr5_2:63041670-63041689 Msa0780880:three_prime_UTR 45.0%
TTGCGAACGTGAATCTTGAC+GGG + chr5_2:63041747-63041766 None:intergenic 45.0%
GTCAAGATTCACGTTCGCAA+AGG - chr5_2:63041747-63041766 Msa0780880:three_prime_UTR 45.0%
TTCATCCATGGCTATGGCTA+TGG + chr5_2:63041791-63041810 None:intergenic 45.0%
TTCAGCTTCATCCATGGCTA+TGG + chr5_2:63041797-63041816 None:intergenic 45.0%
AACGAACAGAAGGGAAGAGT+TGG + chr5_2:63041834-63041853 None:intergenic 45.0%
AATCGCGAGAACGAACAGAA+GGG + chr5_2:63041843-63041862 None:intergenic 45.0%
TAATCGCGAGAACGAACAGA+AGG + chr5_2:63041844-63041863 None:intergenic 45.0%
GGCATGACTAGAAATCACGT+GGG - chr5_2:63042225-63042244 Msa0780880:intron 45.0%
CAGAAGGATTCGAAACTGCA+TGG + chr5_2:63042258-63042277 None:intergenic 45.0%
TGTTGTACGAGACAGAGATG+AGG - chr5_2:63042440-63042459 Msa0780880:intron 45.0%
! AGGATGTTGTGTTTGTTGCG+TGG - chr5_2:63042460-63042479 Msa0780880:intron 45.0%
! GGAGAGTATATCAGATGGAG+GGG - chr5_2:63042620-63042639 Msa0780880:intron 45.0%
! AAGCCTTATCCCACTAAGTC+GGG + chr5_2:63042760-63042779 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+CGG + chr5_2:63042761-63042780 None:intergenic 45.0%
! GCGTTTTATGGCAGCTCAAA+TGG + chr5_2:63042916-63042935 None:intergenic 45.0%
! CAACACTAGATTGAAGTGCC+GGG - chr5_2:63043005-63043024 Msa0780880:intron 45.0%
CGACATGACACTAACACATG+TGG - chr5_2:63043038-63043057 Msa0780880:intron 45.0%
TGACATGATGTTCTGTGTGG+GGG - chr5_2:63043281-63043300 Msa0780880:intron 45.0%
GTCAATGATTGACAGGTGCT+AGG - chr5_2:63043303-63043322 Msa0780880:intron 45.0%
ATGATTGACAGGTGCTAGGA+TGG - chr5_2:63043307-63043326 Msa0780880:intron 45.0%
! CACCATTGTGCAGGCTTTTA+AGG + chr5_2:63043581-63043600 None:intergenic 45.0%
GCAAATCTTCACCATTGTGC+AGG + chr5_2:63043590-63043609 None:intergenic 45.0%
TTAACACCTGGATCTGGATC+TGG - chr5_2:63043799-63043818 Msa0780880:intron 45.0%
!! GGTTTCGGTTTGGATTGGTT+TGG + chr5_2:63043929-63043948 None:intergenic 45.0%
!! TTTGCGGTTTCGGTTTGGAT+TGG + chr5_2:63043934-63043953 None:intergenic 45.0%
!!! GGTTTTTTGCGGTTTCGGTT+TGG + chr5_2:63043939-63043958 None:intergenic 45.0%
!!! AGTGCGGTTTTTTGCGGTTT+CGG + chr5_2:63043944-63043963 None:intergenic 45.0%
AAACCGCAAAAAACCGCACT+TGG - chr5_2:63043944-63043963 Msa0780880:intron 45.0%
!!! GAACCAAGTGCGGTTTTTTG+CGG + chr5_2:63043950-63043969 None:intergenic 45.0%
GCAAAAAACCGCACTTGGTT+CGG - chr5_2:63043949-63043968 Msa0780880:intron 45.0%
GAATTCATCCGAACCAAGTG+CGG + chr5_2:63043960-63043979 None:intergenic 45.0%
!! GCACTTGGTTCGGATGAATT+CGG - chr5_2:63043959-63043978 Msa0780880:intron 45.0%
!! CGGTTTGGTTAGGTTTGGTT+CGG + chr5_2:63044042-63044061 None:intergenic 45.0%
!! TCTTGCGGTTTGGTTAGGTT+TGG + chr5_2:63044047-63044066 None:intergenic 45.0%
!! TTGGATTGGTTCGGTTTGTG+CGG + chr5_2:63044394-63044413 None:intergenic 45.0%
!! CAATGCGGTTTGGATTGGTT+CGG + chr5_2:63044403-63044422 None:intergenic 45.0%
! CAAACCAATGCGGTTTGGAT+TGG + chr5_2:63044408-63044427 None:intergenic 45.0%
!! CAATCCAAACCGCATTGGTT+TGG - chr5_2:63044406-63044425 Msa0780880:intron 45.0%
CAAACCAAACCAATGCGGTT+TGG + chr5_2:63044413-63044432 None:intergenic 45.0%
!! CAAACCGCATTGGTTTGGTT+TGG - chr5_2:63044411-63044430 Msa0780880:intron 45.0%
!! CGCATTGGTTTGGTTTGGTT+TGG - chr5_2:63044416-63044435 Msa0780880:intron 45.0%
! CCGCGAGATAAAAAAGCATG+CGG + chr5_2:63044482-63044501 None:intergenic 45.0%
!!! CCGCATGCTTTTTTATCTCG+CGG - chr5_2:63044479-63044498 Msa0780880:intron 45.0%
!! GTTTACACTAGAGGTGTTCG+CGG + chr5_2:63044544-63044563 None:intergenic 45.0%
TTCCAAAGGAAGGACTAAGG+AGG + chr5_2:63045299-63045318 None:intergenic 45.0%
TGGTTCCAAAGGAAGGACTA+AGG + chr5_2:63045302-63045321 None:intergenic 45.0%
AAACCAAGTCTACTGGTCAC+TGG + chr5_2:63045322-63045341 None:intergenic 45.0%
TGCATGCAAACCAAGTCTAC+TGG + chr5_2:63045329-63045348 None:intergenic 45.0%
!! ACAGGTTGGTACAGAAGAAG+CGG - chr5_2:63045698-63045717 Msa0780880:intron 45.0%
! TTACATGTTTTCCCCAGGTG+TGG - chr5_2:63046449-63046468 Msa0780880:intron 45.0%
TCTGTGTGTATTTGCAGCGG+TGG - chr5_2:63041673-63041692 Msa0780880:three_prime_UTR 50.0%
CATGGCTATGGCTATGGCTA+TGG + chr5_2:63041785-63041804 None:intergenic 50.0%
CATAGCCATAGCCATAGCCA+TGG - chr5_2:63041783-63041802 Msa0780880:three_prime_UTR 50.0%
CAGAAGGGAAGAGTTGGAGA+AGG + chr5_2:63041828-63041847 None:intergenic 50.0%
GGGCATGACTAGAAATCACG+TGG - chr5_2:63042224-63042243 Msa0780880:intron 50.0%
AGATAAGACACATGCGGCTG+AGG + chr5_2:63042357-63042376 None:intergenic 50.0%
GTTGCGTGGTAAGACTAGAC+AGG - chr5_2:63042474-63042493 Msa0780880:intron 50.0%
TGACCCGACTTAGTGGGATA+AGG - chr5_2:63042754-63042773 Msa0780880:intron 50.0%
CGACTTAGTGGGATAAGGCT+TGG - chr5_2:63042759-63042778 Msa0780880:intron 50.0%
TGAGCTGCCATAAAACGCCA+TGG - chr5_2:63042918-63042937 Msa0780880:intron 50.0%
! TCATGTCGGTATTGGACACC+CGG + chr5_2:63043026-63043045 None:intergenic 50.0%
TGTGGGGGTCAATGATTGAC+AGG - chr5_2:63043296-63043315 Msa0780880:intron 50.0%
! ATTCACTTGCTGCTAGACCC+TGG - chr5_2:63043335-63043354 Msa0780880:intron 50.0%
ATCTGGATCTGGATCTGCAC+AGG - chr5_2:63043810-63043829 Msa0780880:intron 50.0%
ATCTGGATCTGCACAGGAAG+AGG - chr5_2:63043816-63043835 Msa0780880:intron 50.0%
TGCACAGGAAGAGGTAGTTG+TGG - chr5_2:63043825-63043844 Msa0780880:intron 50.0%
CGAACCAATCCAAACCGCAT+TGG - chr5_2:63044401-63044420 Msa0780880:intron 50.0%
!! GCATGCGGTTTGGTTTGGTT+CGG + chr5_2:63044467-63044486 None:intergenic 50.0%
AAGGAAGGACTAAGGAGGCA+AGG + chr5_2:63045294-63045313 None:intergenic 50.0%
TGCCTCCTTAGTCCTTCCTT+TGG - chr5_2:63045294-63045313 Msa0780880:intron 50.0%
!! TGGTCACTGGTTCCAAAGGA+AGG + chr5_2:63045309-63045328 None:intergenic 50.0%
!! CTACTGGTCACTGGTTCCAA+AGG + chr5_2:63045313-63045332 None:intergenic 50.0%
GAACCAGTGACCAGTAGACT+TGG - chr5_2:63045316-63045335 Msa0780880:intron 50.0%
! TGAGAGGGGTACATGTGTGT+TGG - chr5_2:63045554-63045573 Msa0780880:intron 50.0%
! GAGAGGGGTACATGTGTGTT+GGG - chr5_2:63045555-63045574 Msa0780880:intron 50.0%
GGTACATGTGTGTTGGGCTA+GGG - chr5_2:63045561-63045580 Msa0780880:intron 50.0%
! CTGTGATGGTGATGTTGCAG+AGG - chr5_2:63045592-63045611 Msa0780880:intron 50.0%
TGGTGTGGGAATCCAAGACT+AGG - chr5_2:63046275-63046294 Msa0780880:intron 50.0%
GGTGTGGGAATCCAAGACTA+GGG - chr5_2:63046276-63046295 Msa0780880:intron 50.0%
GTGTATTTGCAGCGGTGGTG+TGG - chr5_2:63041678-63041697 Msa0780880:three_prime_UTR 55.0%
! AGCAGCGCCATGGCGTTTTA+TGG + chr5_2:63042928-63042947 None:intergenic 55.0%
GCAGATCCAGATCCAGATCC+AGG + chr5_2:63043808-63043827 None:intergenic 55.0%
! GACTTTTGCACTGAACCGCG+CGG - chr5_2:63043984-63044003 Msa0780880:intron 55.0%
GGGTACATGTGTGTTGGGCT+AGG - chr5_2:63045560-63045579 Msa0780880:intron 55.0%
ATGCGGCTGACCCGACTTAG+TGG - chr5_2:63042747-63042766 Msa0780880:intron 60.0%
TGCGGCTGACCCGACTTAGT+GGG - chr5_2:63042748-63042767 Msa0780880:intron 60.0%
TGTGAAGGACAGCAGCGCCA+TGG + chr5_2:63042938-63042957 None:intergenic 60.0%
TTGCACTGAACCGCGCGGTT+CGG - chr5_2:63043989-63044008 Msa0780880:intron 60.0%
GCAAACCAATCCGAACCGCG+CGG + chr5_2:63044002-63044021 None:intergenic 60.0%
!! GCGCGGTTCGGATTGGTTTG+CGG - chr5_2:63044001-63044020 Msa0780880:intron 60.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG + chr5_2:63044529-63044548 None:intergenic 60.0%
!! CACTAGAGGTGTTCGCGGTG+CGG + chr5_2:63044539-63044558 None:intergenic 60.0%
! CTGAACCGCGCGGTTCGGAT+TGG - chr5_2:63043994-63044013 Msa0780880:intron 65.0%
! GAGGTGTTCGCGGTGCGGTT+TGG + chr5_2:63044534-63044553 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 63041663 63046474 63041663 ID=Msa0780880;Name=Msa0780880
chr5_2 mRNA 63041663 63046474 63041663 ID=Msa0780880-mRNA-1;Parent=Msa0780880;Name=Msa0780880-mRNA-1;_AED=0.20;_eAED=0.33;_QI=0|0.33|0.5|1|0.33|0.75|4|309|65
chr5_2 exon 63041663 63042025 63041663 ID=Msa0780880-mRNA-1:exon:18719;Parent=Msa0780880-mRNA-1
chr5_2 exon 63042376 63042435 63042376 ID=Msa0780880-mRNA-1:exon:18718;Parent=Msa0780880-mRNA-1
chr5_2 exon 63046369 63046447 63046369 ID=Msa0780880-mRNA-1:exon:18717;Parent=Msa0780880-mRNA-1
chr5_2 exon 63046470 63046474 63046470 ID=Msa0780880-mRNA-1:exon:18716;Parent=Msa0780880-mRNA-1
chr5_2 CDS 63046470 63046474 63046470 ID=Msa0780880-mRNA-1:cds;Parent=Msa0780880-mRNA-1
chr5_2 CDS 63046369 63046447 63046369 ID=Msa0780880-mRNA-1:cds;Parent=Msa0780880-mRNA-1
chr5_2 CDS 63042376 63042435 63042376 ID=Msa0780880-mRNA-1:cds;Parent=Msa0780880-mRNA-1
chr5_2 CDS 63041972 63042025 63041972 ID=Msa0780880-mRNA-1:cds;Parent=Msa0780880-mRNA-1
chr5_2 three_prime_UTR 63041663 63041971 63041663 ID=Msa0780880-mRNA-1:three_prime_utr;Parent=Msa0780880-mRNA-1
Gene Sequence

>Msa0780880

ATGGCCGGTGGTGTGGTTTATTCTGCAAAGGTTGGCGAATCAGTGAAGTCGAAGTCTTTCCCGTCAAGATTCACGTTCGCAAAGGTTGGTACAGAAGAAGCGGAAAGATTTTGCAAGGCGTTTCAACAAATTCATAAGAGACTAGTCAATGAAGAGTTAAGTTTAGATGTTGCTCGAAAATTGGTAAACTCATCCTAA

Protein sequence

>Msa0780880

MAGGVVYSAKVGESVKSKSFPSRFTFAKVGTEEAERFCKAFQQIHKRLVNEELSLDVARKLVNSS*