AlfalfaGEDB | MS.gene012391

M. sativa cultivar XinJiangDaYe / MS.gene012391

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012391.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012391.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012391.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012391	MS.gene072493	PPI
MS.gene012391	MS.gene04052	PPI
MS.gene012391	MS.gene84536	PPI
MS.gene012391	MS.gene035896	PPI
MS.gene012391	MS.gene061866	PPI
MS.gene012391	MS.gene64650	PPI
MS.gene012391	MS.gene79195	PPI
MS.gene012391	MS.gene048705	PPI
MS.gene012391	MS.gene061876	PPI
MS.gene012391	MS.gene061874	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012391.t1	MTR_7g029510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_7g099610	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_5g063620	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_4g061827	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_4g061920	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_3g462400	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_3g054380	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_3g462730	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_3g462510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene012391.t1	MTR_3g070920	100.000	103	1	103	1	103	2.85e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012391.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT5G59690	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT3G46320	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT3G45930	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT3G53730	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT2G28740	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT1G07660	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199
MS.gene012391.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199

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Find 31 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGCTCTCAAGAGGCAGGGA+AGG	0.583359	8.3:-3052385	MS.gene012391:CDS
ACGGCGAGCATGCTCTGTGT+AGG	0.562056	8.3:+3052436	None:intergenic
AGGAAGAGGCAAAGGAGGAA+AGG	0.518412	8.3:-3052645	MS.gene012391:CDS
AGGACTCTTTATGGATTTGG+CGG	0.509079	8.3:-3052365	MS.gene012391:CDS
AGGAGCAAAACGACACCGTA+AGG	0.575994	8.3:-3052609	MS.gene012391:CDS
AGGAGGAAAGGGTCTTGGAA+AGG	0.553664	8.3:-3052633	MS.gene012391:CDS
AGGCAGGGAAGGACTCTTTA+TGG	0.247348	8.3:-3052374	MS.gene012391:CDS
ATGTCAGGAAGAGGCAAAGG+AGG	0.581057	8.3:-3052650	MS.gene012391:CDS
ATGTCGTTTACGCTCTCAAG+AGG	0.636714	8.3:-3052394	MS.gene012391:CDS
ATTCGTCGTCTTGCAAGACG+TGG	0.646636	8.3:-3052548	MS.gene012391:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAATCTATGAAGAAACTCG+TGG	-	chr8.3:3052508-3052527	MS.gene012391:CDS	30.0%
AGGACTCTTTATGGATTTGG+CGG	-	chr8.3:3052646-3052665	MS.gene012391:CDS	40.0%
GGAAGGACTCTTTATGGATT+TGG	-	chr8.3:3052643-3052662	MS.gene012391:CDS	40.0%
TGTTATCGCGAAGAACCTTA+CGG	+	chr8.3:3052420-3052439	None:intergenic	40.0%
CCGTAAAACTGTTACTGCGA+TGG	-	chr8.3:3052594-3052613	MS.gene012391:CDS	45.0%
GTTCTTCGCGATAACATCCA+GGG	-	chr8.3:3052424-3052443	MS.gene012391:CDS	45.0%
AGGAAGAGGCAAAGGAGGAA+AGG	-	chr8.3:3052366-3052385	MS.gene012391:CDS	50.0%
AGGAGCAAAACGACACCGTA+AGG	-	chr8.3:3052402-3052421	MS.gene012391:CDS	50.0%
AGGAGGAAAGGGTCTTGGAA+AGG	-	chr8.3:3052378-3052397	MS.gene012391:CDS	50.0%
AGGCAGGGAAGGACTCTTTA+TGG	-	chr8.3:3052637-3052656	MS.gene012391:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	3052361	3052672	3052361	ID=MS.gene012391
chr8.3	mRNA	3052361	3052672	3052361	ID=MS.gene012391.t1;Parent=MS.gene012391
chr8.3	exon	3052361	3052672	3052361	ID=MS.gene012391.t1.exon1;Parent=MS.gene012391.t1
chr8.3	CDS	3052361	3052672	3052361	ID=cds.MS.gene012391.t1;Parent=MS.gene012391.t1

Gene Sequence	>MS.gene012391 ATGTCAGGAAGAGGCAAAGGAGGAAAGGGTCTTGGAAAGGGAGGAGCAAAACGACACCGTAAGGTTCTTCGCGATAACATCCAGGGAATCACGAAGCCTGCGATTCGTCGTCTTGCAAGACGTGGTGGTGTGAAGCGTATCAGTGGCTTAATCTATGAAGAAACTCGTGGTGTTCTCAAAATCTTTCTTGAGAATGTGATTCGTGATGCTGTCACCTACACAGAGCATGCTCGCCGTAAAACTGTTACTGCGATGGATGTCGTTTACGCTCTCAAGAGGCAGGGAAGGACTCTTTATGGATTTGGCGGTTAG
Protein sequence	>MS.gene012391.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG