Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78578.t1 | KCW52694.1 | 100 | 103 | 0 | 0 | 1 | 103 | 4 | 106 | 7.50E-48 | 199.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78578.t1 | P62785 | 100.0 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 1.8e-50 | 199.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78578.t1 | M5VRN0 | 100.0 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 5.4e-48 | 199.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene78578 | 0.833514 | 5.10E-56 | -1.69E-46 |
MS.gene049350 | MS.gene78578 | 0.826752 | 2.28E-54 | -1.69E-46 |
MS.gene049807 | MS.gene78578 | 0.824084 | 9.78E-54 | -1.69E-46 |
MS.gene049821 | MS.gene78578 | 0.892042 | 2.28E-74 | -1.69E-46 |
MS.gene049850 | MS.gene78578 | 0.823545 | 1.31E-53 | -1.69E-46 |
MS.gene050020 | MS.gene78578 | 0.817736 | 2.82E-52 | -1.69E-46 |
MS.gene050689 | MS.gene78578 | 0.81475 | 1.31E-51 | -1.69E-46 |
MS.gene050807 | MS.gene78578 | 0.824569 | 7.52E-54 | -1.69E-46 |
MS.gene050808 | MS.gene78578 | 0.800722 | 1.26E-48 | -1.69E-46 |
MS.gene050838 | MS.gene78578 | 0.817141 | 3.85E-52 | -1.69E-46 |
MS.gene050901 | MS.gene78578 | 0.943608 | 8.85E-103 | -1.69E-46 |
MS.gene051018 | MS.gene78578 | 0.801481 | 8.82E-49 | -1.69E-46 |
MS.gene051234 | MS.gene78578 | 0.80174 | 7.81E-49 | -1.69E-46 |
MS.gene051247 | MS.gene78578 | 0.851754 | 7.22E-61 | -1.69E-46 |
MS.gene051328 | MS.gene78578 | 0.817687 | 2.90E-52 | -1.69E-46 |
MS.gene05157 | MS.gene78578 | 0.827714 | 1.34E-54 | -1.69E-46 |
MS.gene051664 | MS.gene78578 | 0.822105 | 2.83E-53 | -1.69E-46 |
MS.gene051700 | MS.gene78578 | 0.819222 | 1.30E-52 | -1.69E-46 |
MS.gene051719 | MS.gene78578 | 0.849408 | 3.30E-60 | -1.69E-46 |
MS.gene051720 | MS.gene78578 | 0.856935 | 2.30E-62 | -1.69E-46 |
MS.gene051744 | MS.gene78578 | 0.820331 | 7.26E-53 | -1.69E-46 |
MS.gene051975 | MS.gene78578 | 0.801594 | 8.36E-49 | -1.69E-46 |
MS.gene052133 | MS.gene78578 | 0.840539 | 8.18E-58 | -1.69E-46 |
MS.gene052516 | MS.gene78578 | 0.835309 | 1.81E-56 | -1.69E-46 |
MS.gene052519 | MS.gene78578 | 0.812373 | 4.38E-51 | -1.69E-46 |
MS.gene052947 | MS.gene78578 | 0.825237 | 5.23E-54 | -1.69E-46 |
MS.gene053122 | MS.gene78578 | 0.806909 | 6.54E-50 | -1.69E-46 |
MS.gene053144 | MS.gene78578 | 0.820812 | 5.63E-53 | -1.69E-46 |
MS.gene053226 | MS.gene78578 | 0.836322 | 1.00E-56 | -1.69E-46 |
MS.gene053563 | MS.gene78578 | 0.823673 | 1.22E-53 | -1.69E-46 |
MS.gene053581 | MS.gene78578 | 0.875258 | 3.55E-68 | -1.69E-46 |
MS.gene05364 | MS.gene78578 | 0.815817 | 7.61E-52 | -1.69E-46 |
MS.gene054142 | MS.gene78578 | 0.805415 | 1.35E-49 | -1.69E-46 |
MS.gene05423 | MS.gene78578 | 0.812433 | 4.25E-51 | -1.69E-46 |
MS.gene054584 | MS.gene78578 | 0.803546 | 3.31E-49 | -1.69E-46 |
MS.gene054651 | MS.gene78578 | 0.809575 | 1.77E-50 | -1.69E-46 |
MS.gene055465 | MS.gene78578 | 0.843884 | 1.06E-58 | -1.69E-46 |
MS.gene055466 | MS.gene78578 | 0.859623 | 3.64E-63 | -1.69E-46 |
MS.gene055468 | MS.gene78578 | 0.841622 | 4.25E-58 | -1.69E-46 |
MS.gene055469 | MS.gene78578 | 0.810853 | 9.38E-51 | -1.69E-46 |
MS.gene055513 | MS.gene78578 | 0.829661 | 4.54E-55 | -1.69E-46 |
MS.gene055537 | MS.gene78578 | 0.826399 | 2.77E-54 | -1.69E-46 |
MS.gene055580 | MS.gene78578 | -0.833472 | 5.23E-56 | -1.69E-46 |
MS.gene055778 | MS.gene78578 | 0.80109 | 1.06E-48 | -1.69E-46 |
MS.gene055818 | MS.gene78578 | 0.825735 | 3.99E-54 | -1.69E-46 |
MS.gene056005 | MS.gene78578 | 0.828023 | 1.13E-54 | -1.69E-46 |
MS.gene056043 | MS.gene78578 | -0.811445 | 6.98E-51 | -1.69E-46 |
MS.gene05608 | MS.gene78578 | 0.835848 | 1.32E-56 | -1.69E-46 |
MS.gene056174 | MS.gene78578 | 0.808128 | 3.61E-50 | -1.69E-46 |
MS.gene056215 | MS.gene78578 | 0.857263 | 1.84E-62 | -1.69E-46 |
MS.gene056308 | MS.gene78578 | 0.851874 | 6.68E-61 | -1.69E-46 |
MS.gene056366 | MS.gene78578 | 0.804967 | 1.67E-49 | -1.69E-46 |
MS.gene056595 | MS.gene78578 | 0.820291 | 7.41E-53 | -1.69E-46 |
MS.gene056699 | MS.gene78578 | 0.802623 | 5.14E-49 | -1.69E-46 |
MS.gene057034 | MS.gene78578 | 0.807192 | 5.70E-50 | -1.69E-46 |
MS.gene057102 | MS.gene78578 | 0.808423 | 3.12E-50 | -1.69E-46 |
MS.gene057294 | MS.gene78578 | 0.822948 | 1.80E-53 | -1.69E-46 |
MS.gene057444 | MS.gene78578 | 0.819708 | 1.01E-52 | -1.69E-46 |
MS.gene057693 | MS.gene78578 | 0.801611 | 8.30E-49 | -1.69E-46 |
MS.gene057694 | MS.gene78578 | 0.833433 | 5.35E-56 | -1.69E-46 |
MS.gene057705 | MS.gene78578 | 0.836368 | 9.75E-57 | -1.69E-46 |
MS.gene058339 | MS.gene78578 | 0.804771 | 1.84E-49 | -1.69E-46 |
MS.gene05847 | MS.gene78578 | 0.816635 | 5.00E-52 | -1.69E-46 |
MS.gene058625 | MS.gene78578 | 0.813774 | 2.16E-51 | -1.69E-46 |
MS.gene058852 | MS.gene78578 | 0.806774 | 6.99E-50 | -1.69E-46 |
MS.gene05894 | MS.gene78578 | 0.825823 | 3.80E-54 | -1.69E-46 |
MS.gene059227 | MS.gene78578 | 0.812222 | 4.73E-51 | -1.69E-46 |
MS.gene059625 | MS.gene78578 | 0.808563 | 2.91E-50 | -1.69E-46 |
MS.gene060365 | MS.gene78578 | 0.833272 | 5.87E-56 | -1.69E-46 |
MS.gene060429 | MS.gene78578 | 0.848693 | 5.21E-60 | -1.69E-46 |
MS.gene060519 | MS.gene78578 | 0.831253 | 1.85E-55 | -1.69E-46 |
MS.gene060587 | MS.gene78578 | 0.832184 | 1.09E-55 | -1.69E-46 |
MS.gene060917 | MS.gene78578 | 0.819317 | 1.24E-52 | -1.69E-46 |
MS.gene061100 | MS.gene78578 | 0.830338 | 3.11E-55 | -1.69E-46 |
MS.gene061176 | MS.gene78578 | 0.817937 | 2.55E-52 | -1.69E-46 |
MS.gene061177 | MS.gene78578 | 0.817216 | 3.70E-52 | -1.69E-46 |
MS.gene061178 | MS.gene78578 | 0.817751 | 2.80E-52 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78578.t1 | MTR_7g029510 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_7g099610 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_5g063620 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_4g061827 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_4g061920 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g462400 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g054380 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g462730 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g462510 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g070920 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g061440 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_3g462410 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_2g096100 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_8g038460 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.85e-68 | 199 |
MS.gene78578.t1 | MTR_4g128150 | 100.000 | 102 | 0 | 0 | 1 | 102 | 1 | 102 | 1.67e-66 | 204 |
MS.gene78578.t1 | MTR_7g029520 | 84.000 | 50 | 8 | 0 | 27 | 76 | 1 | 50 | 2.15e-21 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78578.t1 | AT5G59970 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT5G59690 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT5G59970 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT3G46320 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT3G45930 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT3G53730 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT2G28740 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT1G07660 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT1G07820 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT1G07820 | 100.000 | 103 | 0 | 0 | 1 | 103 | 1 | 103 | 2.99e-68 | 199 |
MS.gene78578.t1 | AT1G07660 | 83.495 | 103 | 0 | 1 | 1 | 103 | 1 | 86 | 4.34e-51 | 155 |
Find 33 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGCAGGGAAGGACTTTATA+TGG | 0.314150 | 7.4:+3609918 | MS.gene78578:CDS |
GGAAGGACTTTATATGGTTT+CGG | 0.362238 | 7.4:+3609924 | MS.gene78578:CDS |
GGAAAAGGAGGAAAGGGATT+AGG | 0.403262 | 7.4:+3609654 | MS.gene78578:CDS |
AAAATGTCAGGCAGAGGAAA+AGG | 0.476544 | 7.4:+3609639 | None:intergenic |
GTGCTTCGTGACAACATTCA+AGG | 0.477240 | 7.4:+3609705 | MS.gene78578:CDS |
GGCAGAGGAAAAGGAGGAAA+GGG | 0.498699 | 7.4:+3609648 | MS.gene78578:CDS |
TCACTGCAAGCGAAAATGTC+AGG | 0.502586 | 7.4:+3609627 | None:intergenic |
CTGCGATTCGTCGTCTTGCA+AGG | 0.502831 | 7.4:+3609739 | MS.gene78578:CDS |
TGTTTATGCTCTGAAGAGGC+AGG | 0.507468 | 7.4:+3609902 | MS.gene78578:CDS |
AGGAGGAAAGGGATTAGGAA+AGG | 0.515958 | 7.4:+3609659 | MS.gene78578:CDS |
GGAGGAAAGGGATTAGGAAA+GGG | 0.527356 | 7.4:+3609660 | MS.gene78578:CDS |
GGAAAGGGATTAGGAAAGGG+AGG | 0.538569 | 7.4:+3609663 | MS.gene78578:CDS |
AAGACGACGAATCGCAGGCT+TGG | 0.548379 | 7.4:-3609733 | None:intergenic |
CTTGCAAGACGACGAATCGC+AGG | 0.552192 | 7.4:-3609738 | None:intergenic |
AGGCAGAGGAAAAGGAGGAA+AGG | 0.557567 | 7.4:+3609647 | MS.gene78578:CDS |
ATGCTCTGAAGAGGCAGGGA+AGG | 0.564763 | 7.4:+3609907 | MS.gene78578:CDS |
GAGGAAGACTGTTACCGCCA+TGG | 0.588179 | 7.4:+3609875 | MS.gene78578:CDS |
CAAGCGAAAATGTCAGGCAG+AGG | 0.590069 | 7.4:+3609633 | None:intergenic |
CATTCTCGAGGAAGATCTTG+AGG | 0.597682 | 7.4:-3609815 | None:intergenic |
AGGACTTTATATGGTTTCGG+TGG | 0.600172 | 7.4:+3609927 | MS.gene78578:CDS |
TTACATACACTGAACACGCT+AGG | 0.600176 | 7.4:+3609853 | MS.gene78578:CDS |
GTTTATGCTCTGAAGAGGCA+GGG | 0.605263 | 7.4:+3609903 | MS.gene78578:CDS |
ATTCGTCGTCTTGCAAGGCG+TGG | 0.611450 | 7.4:+3609744 | MS.gene78578:CDS |
GGCGGTGTTAAGAGAATCAG+TGG | 0.619776 | 7.4:+3609765 | MS.gene78578:CDS |
CAGAGCATAAACAACATCCA+TGG | 0.631933 | 7.4:-3609892 | None:intergenic |
CATACACTGAACACGCTAGG+AGG | 0.635713 | 7.4:+3609856 | MS.gene78578:CDS |
CGTCGTCTTGCAAGGCGTGG+CGG | 0.636706 | 7.4:+3609747 | MS.gene78578:CDS |
ATGTCAGGCAGAGGAAAAGG+AGG | 0.661131 | 7.4:+3609642 | MS.gene78578:CDS |
ATGTTGTTTATGCTCTGAAG+AGG | 0.672733 | 7.4:+3609898 | MS.gene78578:CDS |
TAGGAAAGGGAGGAGCAAAG+AGG | 0.691969 | 7.4:+3609673 | MS.gene78578:CDS |
CTCATATATGAAGAAACTCG+CGG | 0.708309 | 7.4:+3609789 | MS.gene78578:CDS |
CATCACGAATCACATTCTCG+AGG | 0.731876 | 7.4:-3609827 | None:intergenic |
AGCATAAACAACATCCATGG+CGG | 0.735882 | 7.4:-3609889 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CTCATATATGAAGAAACTCG+CGG | + | chr7.4:3609789-3609808 | MS.gene78578:CDS | 35.0% | |
GGAAGGACTTTATATGGTTT+CGG | + | chr7.4:3609924-3609943 | MS.gene78578:CDS | 35.0% | |
!! | ATGTTGTTTATGCTCTGAAG+AGG | + | chr7.4:3609898-3609917 | MS.gene78578:CDS | 35.0% |
AGCATAAACAACATCCATGG+CGG | - | chr7.4:3609892-3609911 | None:intergenic | 40.0% | |
AGGACTTTATATGGTTTCGG+TGG | + | chr7.4:3609927-3609946 | MS.gene78578:CDS | 40.0% | |
CAGAGCATAAACAACATCCA+TGG | - | chr7.4:3609895-3609914 | None:intergenic | 40.0% | |
TTACATACACTGAACACGCT+AGG | + | chr7.4:3609853-3609872 | MS.gene78578:CDS | 40.0% | |
AGGAGGAAAGGGATTAGGAA+AGG | + | chr7.4:3609659-3609678 | MS.gene78578:CDS | 45.0% | |
AGGCAGGGAAGGACTTTATA+TGG | + | chr7.4:3609918-3609937 | MS.gene78578:CDS | 45.0% | |
CATCACGAATCACATTCTCG+AGG | - | chr7.4:3609830-3609849 | None:intergenic | 45.0% | |
CATTCTCGAGGAAGATCTTG+AGG | - | chr7.4:3609818-3609837 | None:intergenic | 45.0% | |
GGAAAAGGAGGAAAGGGATT+AGG | + | chr7.4:3609654-3609673 | MS.gene78578:CDS | 45.0% | |
GGAGGAAAGGGATTAGGAAA+GGG | + | chr7.4:3609660-3609679 | MS.gene78578:CDS | 45.0% | |
GTGCTTCGTGACAACATTCA+AGG | + | chr7.4:3609705-3609724 | MS.gene78578:CDS | 45.0% | |
!! | GTTTATGCTCTGAAGAGGCA+GGG | + | chr7.4:3609903-3609922 | MS.gene78578:CDS | 45.0% |
!! | TGTTTATGCTCTGAAGAGGC+AGG | + | chr7.4:3609902-3609921 | MS.gene78578:CDS | 45.0% |
AGGCAGAGGAAAAGGAGGAA+AGG | + | chr7.4:3609647-3609666 | MS.gene78578:CDS | 50.0% | |
ATGTCAGGCAGAGGAAAAGG+AGG | + | chr7.4:3609642-3609661 | MS.gene78578:CDS | 50.0% | |
CATACACTGAACACGCTAGG+AGG | + | chr7.4:3609856-3609875 | MS.gene78578:CDS | 50.0% | |
GGAAAGGGATTAGGAAAGGG+AGG | + | chr7.4:3609663-3609682 | MS.gene78578:CDS | 50.0% | |
GGCAGAGGAAAAGGAGGAAA+GGG | + | chr7.4:3609648-3609667 | MS.gene78578:CDS | 50.0% | |
TAGGAAAGGGAGGAGCAAAG+AGG | + | chr7.4:3609673-3609692 | MS.gene78578:CDS | 50.0% | |
! | GGCGGTGTTAAGAGAATCAG+TGG | + | chr7.4:3609765-3609784 | MS.gene78578:CDS | 50.0% |
AAGACGACGAATCGCAGGCT+TGG | - | chr7.4:3609736-3609755 | None:intergenic | 55.0% | |
ATTCGTCGTCTTGCAAGGCG+TGG | + | chr7.4:3609744-3609763 | MS.gene78578:CDS | 55.0% | |
CTGCGATTCGTCGTCTTGCA+AGG | + | chr7.4:3609739-3609758 | MS.gene78578:CDS | 55.0% | |
CTTGCAAGACGACGAATCGC+AGG | - | chr7.4:3609741-3609760 | None:intergenic | 55.0% | |
GAGGAAGACTGTTACCGCCA+TGG | + | chr7.4:3609875-3609894 | MS.gene78578:CDS | 55.0% | |
!! | ATGCTCTGAAGAGGCAGGGA+AGG | + | chr7.4:3609907-3609926 | MS.gene78578:CDS | 55.0% |
CGTCGTCTTGCAAGGCGTGG+CGG | + | chr7.4:3609747-3609766 | MS.gene78578:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 3609642 | 3609953 | 3609642 | ID=MS.gene78578 |
chr7.4 | mRNA | 3609642 | 3609953 | 3609642 | ID=MS.gene78578.t1;Parent=MS.gene78578 |
chr7.4 | exon | 3609642 | 3609953 | 3609642 | ID=MS.gene78578.t1.exon1;Parent=MS.gene78578.t1 |
chr7.4 | CDS | 3609642 | 3609953 | 3609642 | ID=cds.MS.gene78578.t1;Parent=MS.gene78578.t1 |
Gene Sequence |
Protein sequence |