AlfalfaGEDB | MS.gene89488

M. sativa cultivar XinJiangDaYe / MS.gene89488

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89488.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89488.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89488.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene89488	0.81171	6.11E-51	-1.69E-46
MS.gene049159	MS.gene89488	0.818952	1.50E-52	-1.69E-46
MS.gene049341	MS.gene89488	0.804508	2.09E-49	-1.69E-46
MS.gene049350	MS.gene89488	0.802864	4.58E-49	-1.69E-46
MS.gene049368	MS.gene89488	0.819243	1.29E-52	-1.69E-46
MS.gene049821	MS.gene89488	0.880751	4.24E-70	-1.69E-46
MS.gene050020	MS.gene89488	0.819417	1.17E-52	-1.69E-46
MS.gene050253	MS.gene89488	0.802348	5.86E-49	-1.69E-46
MS.gene050689	MS.gene89488	0.806883	6.63E-50	-1.69E-46
MS.gene050807	MS.gene89488	0.859602	3.69E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004121	MS.gene89488	PPI
MS.gene004124	MS.gene89488	PPI
MS.gene008276	MS.gene89488	PPI
MS.gene009027	MS.gene89488	PPI
MS.gene010219	MS.gene89488	PPI
MS.gene010220	MS.gene89488	PPI
MS.gene012390	MS.gene89488	PPI
MS.gene012391	MS.gene89488	PPI
MS.gene016624	MS.gene89488	PPI
MS.gene018578	MS.gene89488	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89488.t1	MTR_7g029510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_7g099610	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_5g063620	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_4g061827	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_4g061920	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_3g462400	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_3g054380	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_3g462730	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_3g462510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene89488.t1	MTR_3g070920	100.000	103	1	103	1	103	2.85e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89488.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT5G59690	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT3G46320	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT3G45930	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT3G53730	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT2G28740	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT1G07660	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199
MS.gene89488.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199

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Find 27 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAATGTCAGGAAGAGGCAA+AGG	0.598135	5.4:-49488831	MS.gene89488:CDS
AGCGTCATCGCAAAGTTCTG+AGG	0.579604	5.4:-49488779	MS.gene89488:CDS
AGGAAGAGGCAAAGGAGGAA+AGG	0.518412	5.4:-49488823	MS.gene89488:CDS
AGGAGGAAAGGGTCTGGGAA+AGG	0.504074	5.4:-49488811	MS.gene89488:CDS
AGGCAAAGGAGGAAAGGGTC+TGG	0.443290	5.4:-49488817	MS.gene89488:CDS
AGGCAAGGAAGAACCCTTTA+TGG	0.295802	5.4:-49488552	MS.gene89488:CDS
ATCTTGCAATCAACAATGTC+AGG	0.473641	5.4:-49488843	None:intergenic
ATGTCAGGAAGAGGCAAAGG+AGG	0.604597	5.4:-49488828	MS.gene89488:CDS
ATGTTGTTTATGCACTCAAG+AGG	0.622074	5.4:-49488572	MS.gene89488:CDS
ATTCGTCGTCTCGCAAGGCG+TGG	0.608390	5.4:-49488726	MS.gene89488:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACCCCCAAAACCATAAA+GGG	+	chr5.4:49488831-49488850	None:intergenic	40.0%
AGGCAAGGAAGAACCCTTTA+TGG	-	chr5.4:49488815-49488834	MS.gene89488:CDS	45.0%
CTGATCTATGAAGAGACTCG+CGG	-	chr5.4:49488686-49488705	MS.gene89488:CDS	45.0%
GTTTATGCACTCAAGAGGCA+AGG	-	chr5.4:49488800-49488819	MS.gene89488:CDS	45.0%
TGAACATGCTCGTCGCAAAA+CGG	-	chr5.4:49488760-49488779	MS.gene89488:CDS	45.0%
AGCGTCATCGCAAAGTTCTG+AGG	-	chr5.4:49488588-49488607	MS.gene89488:CDS	50.0%
AGGAAGAGGCAAAGGAGGAA+AGG	-	chr5.4:49488544-49488563	MS.gene89488:CDS	50.0%
ATGTCAGGAAGAGGCAAAGG+AGG	-	chr5.4:49488539-49488558	MS.gene89488:CDS	50.0%
GGAAGAGGCAAAGGAGGAAA+GGG	-	chr5.4:49488545-49488564	MS.gene89488:CDS	50.0%
TCGCAAAACGGTGACTGCTA+TGG	-	chr5.4:49488772-49488791	MS.gene89488:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	49488539	49488850	49488539	ID=MS.gene89488
chr5.4	mRNA	49488539	49488850	49488539	ID=MS.gene89488.t1;Parent=MS.gene89488
chr5.4	exon	49488539	49488850	49488539	ID=MS.gene89488.t1.exon1;Parent=MS.gene89488.t1
chr5.4	CDS	49488539	49488850	49488539	ID=cds.MS.gene89488.t1;Parent=MS.gene89488.t1

Gene Sequence	>MS.gene89488 ATGTCAGGAAGAGGCAAAGGAGGAAAGGGTCTGGGAAAGGGTGGTGCAAAGCGTCATCGCAAAGTTCTGAGGGATAACATTCAAGGCATCACCAAACCTGCGATTCGTCGTCTCGCAAGGCGTGGTGGTGTGAAGCGTATCAGTGGTCTGATCTATGAAGAGACTCGCGGTGTTCTCAAGATATTTCTTGAGAATGTTATTCGCGATGCTGTAACTTACACTGAACATGCTCGTCGCAAAACGGTGACTGCTATGGATGTTGTTTATGCACTCAAGAGGCAAGGAAGAACCCTTTATGGTTTTGGGGGTTAG
Protein sequence	>MS.gene89488.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG