AlfalfaGEDB | MS.gene04068

M. sativa cultivar XinJiangDaYe / MS.gene04068

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04068.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04068.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04068.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009027	MS.gene04068	PPI
MS.gene010220	MS.gene04068	PPI
MS.gene012391	MS.gene04068	PPI
MS.gene022932	MS.gene04068	PPI
MS.gene022946	MS.gene04068	PPI
MS.gene028629	MS.gene04068	PPI
MS.gene035718	MS.gene04068	PPI
MS.gene035719	MS.gene04068	PPI
MS.gene035721	MS.gene04068	PPI
MS.gene035787	MS.gene04068	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04068.t1	MTR_7g029510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_7g099610	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_5g063620	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_4g061827	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_4g061920	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_3g462400	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_3g054380	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_3g462730	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_3g462510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04068.t1	MTR_3g070920	100.000	103	1	103	1	103	2.85e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04068.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT5G59690	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT3G46320	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT3G45930	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT3G53730	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT2G28740	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT1G07660	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04068.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199

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Find 38 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAGGCCGTGGAAA+GGG	0.516096	3.1:-46701443	MS.gene04068:CDS
AGAACCCTCTATGGATTTGG+AGG	0.508817	3.1:-46701155	MS.gene04068:CDS
AGACAAGGAAGAACCCTCTA+TGG	0.396310	3.1:-46701164	MS.gene04068:CDS
AGAGCATGCTAGGAGGAAGA+CGG	0.676878	3.1:-46701219	MS.gene04068:CDS
AGGCCGTGGAAAGGGAGGTA+AGG	0.492819	3.1:-46701435	MS.gene04068:CDS
AGGGAGGTGCAAAGAGGCAT+AGG	0.498985	3.1:-46701403	MS.gene04068:CDS
AGGTGCAAAGAGGCATAGGA+AGG	0.586086	3.1:-46701399	MS.gene04068:CDS
AGGTGTCTTGAAGATCTTCT+TGG	0.405705	3.1:-46701273	MS.gene04068:CDS
ATGTCAGGCCGTGGAAAGGG+AGG	0.634999	3.1:-46701440	MS.gene04068:CDS
ATTCGTCGATTGGCAAGAAG+AGG	0.629429	3.1:-46701338	MS.gene04068:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATCTATGAAGAAACCAG+AGG	-	chr3.1:46701298-46701317	MS.gene04068:CDS	35.0%
AGGTGTCTTGAAGATCTTCT+TGG	-	chr3.1:46701318-46701337	MS.gene04068:CDS	40.0%
CAAAGCATAGACAACATCCA+TGG	+	chr3.1:46701404-46701423	None:intergenic	40.0%
TCAACCTCCAAATCCATAGA+GGG	+	chr3.1:46701443-46701462	None:intergenic	40.0%
TGATACCCTGGATGTTATCA+CGG	+	chr3.1:46701222-46701241	None:intergenic	40.0%
AGAACCCTCTATGGATTTGG+AGG	-	chr3.1:46701436-46701455	MS.gene04068:CDS	45.0%
AGACAAGGAAGAACCCTCTA+TGG	-	chr3.1:46701427-46701446	MS.gene04068:CDS	45.0%
CAAACCTGCTATTCGTCGAT+TGG	-	chr3.1:46701243-46701262	MS.gene04068:CDS	45.0%
CAATCGACGAATAGCAGGTT+TGG	+	chr3.1:46701245-46701264	None:intergenic	45.0%
GAAGATCTTCAAGACACCTC+TGG	+	chr3.1:46701317-46701336	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	46701151	46701462	46701151	ID=MS.gene04068
chr3.1	mRNA	46701151	46701462	46701151	ID=MS.gene04068.t1;Parent=MS.gene04068
chr3.1	exon	46701151	46701462	46701151	ID=MS.gene04068.t1.exon1;Parent=MS.gene04068.t1
chr3.1	CDS	46701151	46701462	46701151	ID=cds.MS.gene04068.t1;Parent=MS.gene04068.t1

Gene Sequence	>MS.gene04068 ATGTCAGGCCGTGGAAAGGGAGGTAAGGGACTCGGAAAGGGAGGTGCAAAGAGGCATAGGAAGGTTCTCCGTGATAACATCCAGGGTATCACCAAACCTGCTATTCGTCGATTGGCAAGAAGAGGTGGTGTCAAGAGAATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTCTTGAAGATCTTCTTGGAAAACGTCATTCGTGATGCTGTCACATACACAGAGCATGCTAGGAGGAAGACGGTGACAGCCATGGATGTTGTCTATGCTTTGAAGAGACAAGGAAGAACCCTCTATGGATTTGGAGGTTGA
Protein sequence	>MS.gene04068.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG